Results

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Go to: Gene Set Collection: KEGG
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Go to: Gene Set Collection: pathwayCommons.cell-map
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Go to: Gene Set Collection: miranda.targets
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Go to: Gene Set Collection: miRNAtargetIntersection
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: hprdBatch.UP
Go to: Gene Set Collection: hprdBatch.DIFFERENT
Go to: Gene Set Collection: hprdManual.UP

AFA results for: Buphenyl.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 03040 View Gene Set 5.472e-15 128 1.171e-12 1 Spliceosome www.genome.jp/d...
KEGG 04110 View Gene Set 9.943e-09 128 1.064e-06 2 Cell cycle www.genome.jp/d...
KEGG 03050 View Gene Set 2.438e-07 48 1.739e-05 3 Proteasome www.genome.jp/d...
KEGG 00240 View Gene Set 7.796e-06 99 0.0004171 4 Pyrimidine metabolism www.genome.jp/d...
KEGG 04120 View Gene Set 1.597e-05 139 0.0006837 5 Ubiquitin mediated proteolysis www.genome.jp/d...
KEGG 03018 View Gene Set 0.0001017 59 0.002722 6 RNA degradation www.genome.jp/d...
KEGG 03030 View Gene Set 9.902e-05 36 0.002722 6 DNA replication www.genome.jp/d...
KEGG 03430 View Gene Set 9.041e-05 23 0.002722 6 Mismatch repair www.genome.jp/d...
KEGG 03420 View Gene Set 0.0002612 44 0.00621 9 Nucleotide excision repair www.genome.jp/d...
KEGG 03020 View Gene Set 0.001644 29 0.03518 10 RNA polymerase www.genome.jp/d...
KEGG 00190 View Gene Set 0.001857 134 0.03614 11 Oxidative phosphorylation www.genome.jp/d...
KEGG 00970 View Gene Set 0.002327 41 0.04151 12 Aminoacyl-tRNA biosynthesis www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0043227 View Gene Set 5.031e-51 8383 3.766e-47 1 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 5.637e-51 8376 3.766e-47 1 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0044424 View Gene Set 2.273e-49 10976 1.012e-45 3 intracellular part amigo.geneontol...
GO GO:0005622 View Gene Set 6.127e-49 11329 2.046e-45 4 intracellular amigo.geneontol...
GO GO:0043229 View Gene Set 2.405e-46 9346 6.426e-43 5 intracellular organelle amigo.geneontol...
GO GO:0044428 View Gene Set 5.659e-46 1938 1.26e-42 6 nuclear part amigo.geneontol...
GO GO:0043226 View Gene Set 6.807e-46 9360 1.299e-42 7 organelle amigo.geneontol...
GO GO:0005634 View Gene Set 1.782e-43 5198 2.975e-40 8 nucleus amigo.geneontol...
GO GO:0070013 View Gene Set 3.344e-41 1845 4.965e-38 9 intracellular organelle lumen amigo.geneontol...
GO GO:0044446 View Gene Set 1.398e-40 5019 1.867e-37 10 intracellular organelle part amigo.geneontol...
GO GO:0031974 View Gene Set 1.657e-40 1917 2.012e-37 11 membrane-enclosed lumen amigo.geneontol...
GO GO:0044260 View Gene Set 1.428e-39 5699 1.59e-36 12 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0044422 View Gene Set 5.343e-39 5089 5.491e-36 13 organelle part amigo.geneontol...
GO GO:0043233 View Gene Set 6.71e-39 1881 6.404e-36 14 organelle lumen amigo.geneontol...
GO GO:0031981 View Gene Set 7.368e-39 1518 6.563e-36 15 nuclear lumen amigo.geneontol...
GO GO:0006396 View Gene Set 2.812e-35 578 2.348e-32 16 RNA processing amigo.geneontol...
GO GO:0043170 View Gene Set 1.496e-29 6274 1.176e-26 17 macromolecule metabolic process amigo.geneontol...
GO GO:0003723 View Gene Set 2.399e-29 732 1.781e-26 18 RNA binding amigo.geneontol...
GO GO:0090304 View Gene Set 7.022e-29 3724 4.938e-26 19 nucleic acid metabolic process amigo.geneontol...
GO GO:0044237 View Gene Set 6.905e-28 7431 4.613e-25 20 cellular metabolic process amigo.geneontol...
GO GO:0003676 View Gene Set 8.262e-27 2979 5.256e-24 21 nucleic acid binding amigo.geneontol...
GO GO:0005654 View Gene Set 1.456e-25 939 8.844e-23 22 nucleoplasm amigo.geneontol...
GO GO:0006139 View Gene Set 7.527e-24 4294 4.308e-21 23 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0010467 View Gene Set 7.739e-24 3806 4.308e-21 23 gene expression amigo.geneontol...
GO GO:0007049 View Gene Set 1.449e-23 1006 7.743e-21 25 cell cycle amigo.geneontol...
GO GO:0030529 View Gene Set 3.601e-21 504 1.85e-18 26 ribonucleoprotein complex amigo.geneontol...
GO GO:0008380 View Gene Set 3.187e-20 300 1.577e-17 27 RNA splicing amigo.geneontol...
GO GO:0034641 View Gene Set 3.875e-20 4584 1.849e-17 28 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0022613 View Gene Set 6.605e-20 194 3.043e-17 29 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0005739 View Gene Set 1.161e-19 1274 5.171e-17 30 mitochondrion amigo.geneontol...
GO GO:0022402 View Gene Set 2.363e-19 676 1.019e-16 31 cell cycle process amigo.geneontol...
GO GO:0006807 View Gene Set 3.114e-19 4698 1.3e-16 32 nitrogen compound metabolic process amigo.geneontol...
GO GO:0006397 View Gene Set 6.521e-19 317 2.64e-16 33 mRNA processing amigo.geneontol...
GO GO:0032991 View Gene Set 8.364e-19 3237 3.287e-16 34 macromolecular complex amigo.geneontol...
GO GO:0016071 View Gene Set 9.109e-19 381 3.435e-16 35 mRNA metabolic process amigo.geneontol...
GO GO:0044238 View Gene Set 9.256e-19 7629 3.435e-16 35 primary metabolic process amigo.geneontol...
GO GO:0000278 View Gene Set 3.777e-18 489 1.328e-15 37 mitotic cell cycle amigo.geneontol...
GO GO:0008152 View Gene Set 3.677e-18 8439 1.328e-15 37 metabolic process amigo.geneontol...
GO GO:0005730 View Gene Set 9.227e-18 734 3.161e-15 39 nucleolus amigo.geneontol...
GO GO:0006259 View Gene Set 4.67e-17 592 1.56e-14 40 DNA metabolic process amigo.geneontol...
GO GO:0022403 View Gene Set 1.693e-16 522 5.518e-14 41 cell cycle phase amigo.geneontol...
GO GO:0044265 View Gene Set 3.745e-16 479 1.191e-13 42 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0034645 View Gene Set 5.172e-16 3529 1.607e-13 43 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0044451 View Gene Set 8.384e-16 600 2.546e-13 44 nucleoplasm part amigo.geneontol...
GO GO:0043228 View Gene Set 1.171e-15 2690 3.4e-13 45 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 1.171e-15 2690 3.4e-13 45 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0006412 View Gene Set 1.995e-15 412 5.671e-13 47 translation amigo.geneontol...
GO GO:0005694 View Gene Set 6.616e-15 507 1.841e-12 48 chromosome amigo.geneontol...
GO GO:0000279 View Gene Set 1.079e-14 406 2.941e-12 49 M phase amigo.geneontol...
GO GO:0009059 View Gene Set 1.334e-14 3597 3.565e-12 50 macromolecule biosynthetic process amigo.geneontol...
GO GO:0034660 View Gene Set 1.441e-14 236 3.776e-12 51 ncRNA metabolic process amigo.geneontol...
GO GO:0006511 View Gene Set 1.698e-14 296 4.363e-12 52 ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0034470 View Gene Set 2.135e-14 193 5.381e-12 53 ncRNA processing amigo.geneontol...
GO GO:0019941 View Gene Set 4.683e-14 302 1.138e-11 54 modification-dependent protein catabolic process amigo.geneontol...
GO GO:0043632 View Gene Set 4.683e-14 302 1.138e-11 54 modification-dependent macromolecule catabolic process amigo.geneontol...
GO GO:0006281 View Gene Set 5.446e-14 309 1.281e-11 56 DNA repair amigo.geneontol...
GO GO:0005737 View Gene Set 5.464e-14 7676 1.281e-11 56 cytoplasm amigo.geneontol...
GO GO:0016070 View Gene Set 7.923e-14 2596 1.794e-11 58 RNA metabolic process amigo.geneontol...
GO GO:0042254 View Gene Set 7.922e-14 130 1.794e-11 58 ribosome biogenesis amigo.geneontol...
GO GO:0006974 View Gene Set 1.062e-13 412 2.364e-11 60 response to DNA damage stimulus amigo.geneontol...
GO GO:0044429 View Gene Set 1.112e-13 619 2.435e-11 61 mitochondrial part amigo.geneontol...
GO GO:0051301 View Gene Set 1.645e-13 358 3.544e-11 62 cell division amigo.geneontol...
GO GO:0000775 View Gene Set 1.978e-13 146 4.195e-11 63 chromosome centromeric region amigo.geneontol...
GO GO:0070647 View Gene Set 9.429e-13 356 1.968e-10 64 protein modification by small protein conjugation or removal amigo.geneontol...
GO GO:0048285 View Gene Set 1.79e-12 286 3.678e-10 65 organelle fission amigo.geneontol...
GO GO:0016604 View Gene Set 2.158e-12 198 4.368e-10 66 nuclear body amigo.geneontol...
GO GO:0051603 View Gene Set 2.333e-12 346 4.652e-10 67 proteolysis involved in cellular protein catabolic process amigo.geneontol...
GO GO:0000776 View Gene Set 2.726e-12 92 5.357e-10 68 kinetochore amigo.geneontol...
GO GO:0000087 View Gene Set 2.895e-12 286 5.528e-10 69 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0044257 View Gene Set 2.897e-12 349 5.528e-10 69 cellular protein catabolic process amigo.geneontol...
GO GO:0044427 View Gene Set 3.448e-12 420 6.489e-10 71 chromosomal part amigo.geneontol...
GO GO:0031967 View Gene Set 5.146e-12 672 9.549e-10 72 organelle envelope amigo.geneontol...
GO GO:0006261 View Gene Set 6.378e-12 74 1.167e-09 73 DNA-dependent DNA replication amigo.geneontol...
GO GO:0000779 View Gene Set 7.001e-12 79 1.264e-09 74 condensed chromosome centromeric region amigo.geneontol...
GO GO:0000280 View Gene Set 1.114e-11 276 1.933e-09 75 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 1.114e-11 276 1.933e-09 75 mitosis amigo.geneontol...
GO GO:0016874 View Gene Set 1.114e-11 436 1.933e-09 75 ligase activity amigo.geneontol...
GO GO:0044249 View Gene Set 1.191e-11 4326 2.04e-09 78 cellular biosynthetic process amigo.geneontol...
GO GO:0000777 View Gene Set 1.23e-11 74 2.081e-09 79 condensed chromosome kinetochore amigo.geneontol...
GO GO:0032446 View Gene Set 1.281e-11 310 2.139e-09 80 protein modification by small protein conjugation amigo.geneontol...
GO GO:0009057 View Gene Set 1.405e-11 570 2.318e-09 81 macromolecule catabolic process amigo.geneontol...
GO GO:0044267 View Gene Set 2.053e-11 2465 3.345e-09 82 cellular protein metabolic process amigo.geneontol...
GO GO:0000793 View Gene Set 2.857e-11 136 4.599e-09 83 condensed chromosome amigo.geneontol...
GO GO:0016567 View Gene Set 5.158e-11 286 8.203e-09 84 protein ubiquitination amigo.geneontol...
GO GO:0000502 View Gene Set 5.784e-11 63 9.091e-09 85 proteasome complex amigo.geneontol...
GO GO:0006260 View Gene Set 7.897e-11 239 1.227e-08 86 DNA replication amigo.geneontol...
GO GO:0005681 View Gene Set 1.028e-10 135 1.579e-08 87 spliceosomal complex amigo.geneontol...
GO GO:0009058 View Gene Set 1.226e-10 4436 1.861e-08 88 biosynthetic process amigo.geneontol...
GO GO:0043161 View Gene Set 1.24e-10 162 1.862e-08 89 proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0000375 View Gene Set 1.34e-10 106 1.989e-08 90 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0010498 View Gene Set 1.764e-10 166 2.57e-08 91 proteasomal protein catabolic process amigo.geneontol...
GO GO:0031975 View Gene Set 1.77e-10 685 2.57e-08 91 envelope amigo.geneontol...
GO GO:0051436 View Gene Set 1.911e-10 62 2.745e-08 93 negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0000075 View Gene Set 2.373e-10 109 3.373e-08 94 cell cycle checkpoint amigo.geneontol...
GO GO:0030163 View Gene Set 3.203e-10 398 4.505e-08 95 protein catabolic process amigo.geneontol...
GO GO:0031396 View Gene Set 4.482e-10 121 6.238e-08 96 regulation of protein ubiquitination amigo.geneontol...
GO GO:0031145 View Gene Set 4.639e-10 64 6.39e-08 97 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0031397 View Gene Set 4.754e-10 78 6.481e-08 98 negative regulation of protein ubiquitination amigo.geneontol...
GO GO:0000377 View Gene Set 5.049e-10 97 6.745e-08 99 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 5.049e-10 97 6.745e-08 99 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0050657 View Gene Set 5.715e-10 102 7.413e-08 101 nucleic acid transport amigo.geneontol...
GO GO:0050658 View Gene Set 5.715e-10 102 7.413e-08 101 RNA transport amigo.geneontol...
GO GO:0051236 View Gene Set 5.715e-10 102 7.413e-08 101 establishment of RNA localization amigo.geneontol...
GO GO:0006996 View Gene Set 7.732e-10 1501 9.933e-08 104 organelle organization amigo.geneontol...
GO GO:0051439 View Gene Set 1.029e-09 68 1.309e-07 105 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0051351 View Gene Set 1.282e-09 74 1.615e-07 106 positive regulation of ligase activity amigo.geneontol...
GO GO:0051352 View Gene Set 1.505e-09 66 1.862e-07 107 negative regulation of ligase activity amigo.geneontol...
GO GO:0051444 View Gene Set 1.505e-09 66 1.862e-07 107 negative regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0006403 View Gene Set 1.773e-09 104 2.173e-07 109 RNA localization amigo.geneontol...
GO GO:0051340 View Gene Set 1.993e-09 85 2.42e-07 110 regulation of ligase activity amigo.geneontol...
GO GO:0022618 View Gene Set 2.117e-09 76 2.548e-07 111 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0016879 View Gene Set 2.314e-09 273 2.761e-07 112 ligase activity forming carbon-nitrogen bonds amigo.geneontol...
GO GO:0051443 View Gene Set 2.372e-09 71 2.804e-07 113 positive regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0005819 View Gene Set 2.691e-09 167 3.154e-07 114 spindle amigo.geneontol...
GO GO:0031398 View Gene Set 3.336e-09 95 3.876e-07 115 positive regulation of protein ubiquitination amigo.geneontol...
GO GO:0044444 View Gene Set 3.488e-09 5184 4.017e-07 116 cytoplasmic part amigo.geneontol...
GO GO:0051438 View Gene Set 3.722e-09 82 4.25e-07 117 regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0006364 View Gene Set 4.107e-09 97 4.65e-07 118 rRNA processing amigo.geneontol...
GO GO:0016072 View Gene Set 5.575e-09 101 6.259e-07 119 rRNA metabolic process amigo.geneontol...
GO GO:0051028 View Gene Set 6.273e-09 90 6.984e-07 120 mRNA transport amigo.geneontol...
GO GO:0051437 View Gene Set 6.948e-09 64 7.671e-07 121 positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0006399 View Gene Set 1.76e-08 118 1.927e-06 122 tRNA metabolic process amigo.geneontol...
GO GO:0005740 View Gene Set 2.274e-08 444 2.47e-06 123 mitochondrial envelope amigo.geneontol...
GO GO:0043234 View Gene Set 2.444e-08 2680 2.633e-06 124 protein complex amigo.geneontol...
GO GO:0033554 View Gene Set 2.749e-08 698 2.938e-06 125 cellular response to stress amigo.geneontol...
GO GO:0019866 View Gene Set 2.849e-08 334 3.02e-06 126 organelle inner membrane amigo.geneontol...
GO GO:0006457 View Gene Set 3.396e-08 172 3.573e-06 127 protein folding amigo.geneontol...
GO GO:0016607 View Gene Set 4.884e-08 116 5.098e-06 128 nuclear speck amigo.geneontol...
GO GO:0031966 View Gene Set 5.02e-08 420 5.199e-06 129 mitochondrial membrane amigo.geneontol...
GO GO:0000226 View Gene Set 9.39e-08 178 9.65e-06 130 microtubule cytoskeleton organization amigo.geneontol...
GO GO:0005759 View Gene Set 1.573e-07 223 1.58e-05 131 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 1.573e-07 223 1.58e-05 131 mitochondrial lumen amigo.geneontol...
GO GO:0016881 View Gene Set 1.56e-07 245 1.58e-05 131 acid-amino acid ligase activity amigo.geneontol...
GO GO:0015931 View Gene Set 1.589e-07 118 1.584e-05 134 nucleobase nucleoside nucleotide and nucleic acid transport amigo.geneontol...
GO GO:0003824 View Gene Set 2.101e-07 5198 2.079e-05 135 catalytic activity amigo.geneontol...
GO GO:0015030 View Gene Set 3.555e-07 43 3.492e-05 136 Cajal body amigo.geneontol...
GO GO:0005743 View Gene Set 4.416e-07 305 4.306e-05 137 mitochondrial inner membrane amigo.geneontol...
GO GO:0007093 View Gene Set 4.856e-07 52 4.701e-05 138 mitotic cell cycle checkpoint amigo.geneontol...
GO GO:0006367 View Gene Set 5.609e-07 75 5.391e-05 139 transcription initiation from RNA polymerase II promoter amigo.geneontol...
GO GO:0005643 View Gene Set 5.752e-07 71 5.481e-05 140 nuclear pore amigo.geneontol...
GO GO:0016591 View Gene Set 5.785e-07 77 5.481e-05 140 DNA-directed RNA polymerase II holoenzyme amigo.geneontol...
GO GO:0019787 View Gene Set 6.421e-07 210 6.041e-05 142 small conjugating protein ligase activity amigo.geneontol...
GO GO:0000166 View Gene Set 6.47e-07 2257 6.045e-05 143 nucleotide binding amigo.geneontol...
GO GO:0019538 View Gene Set 8.665e-07 2935 8.039e-05 144 protein metabolic process amigo.geneontol...
GO GO:0060255 View Gene Set 9.655e-07 3411 8.896e-05 145 regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0051082 View Gene Set 9.898e-07 113 9.057e-05 146 unfolded protein binding amigo.geneontol...
GO GO:0016818 View Gene Set 1.008e-06 765 9.166e-05 147 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides amigo.geneontol...
GO GO:0004386 View Gene Set 1.023e-06 144 9.231e-05 148 helicase activity amigo.geneontol...
GO GO:0051726 View Gene Set 1.074e-06 451 9.569e-05 149 regulation of cell cycle amigo.geneontol...
GO GO:0005840 View Gene Set 1.068e-06 198 9.569e-05 149 ribosome amigo.geneontol...
GO GO:0016462 View Gene Set 1.172e-06 762 0.0001037 151 pyrophosphatase activity amigo.geneontol...
GO GO:0017111 View Gene Set 1.466e-06 733 0.0001289 152 nucleoside-triphosphatase activity amigo.geneontol...
GO GO:0016817 View Gene Set 1.726e-06 769 0.0001507 153 hydrolase activity acting on acid anhydrides amigo.geneontol...
GO GO:0006352 View Gene Set 1.756e-06 91 0.0001523 154 transcription initiation amigo.geneontol...
GO GO:0044085 View Gene Set 2.259e-06 1167 0.0001947 155 cellular component biogenesis amigo.geneontol...
GO GO:0006417 View Gene Set 2.77e-06 151 0.0002372 156 regulation of translation amigo.geneontol...
GO GO:0007059 View Gene Set 3.202e-06 94 0.0002725 157 chromosome segregation amigo.geneontol...
GO GO:0031570 View Gene Set 3.666e-06 63 0.00031 158 DNA integrity checkpoint amigo.geneontol...
GO GO:0008033 View Gene Set 4.408e-06 78 0.0003703 159 tRNA processing amigo.geneontol...
GO GO:0007017 View Gene Set 5.508e-06 281 0.00046 160 microtubule-based process amigo.geneontol...
GO GO:0044248 View Gene Set 7.11e-06 1005 0.0005863 161 cellular catabolic process amigo.geneontol...
GO GO:0046930 View Gene Set 7.081e-06 85 0.0005863 161 pore complex amigo.geneontol...
GO GO:0051276 View Gene Set 8.008e-06 548 0.0006564 163 chromosome organization amigo.geneontol...
GO GO:0015630 View Gene Set 8.402e-06 587 0.0006845 164 microtubule cytoskeleton amigo.geneontol...
GO GO:0046907 View Gene Set 8.898e-06 753 0.0007205 165 intracellular transport amigo.geneontol...
GO GO:0031577 View Gene Set 9.044e-06 17 0.0007279 166 spindle checkpoint amigo.geneontol...
GO GO:0000077 View Gene Set 9.407e-06 59 0.0007525 167 DNA damage checkpoint amigo.geneontol...
GO GO:0005815 View Gene Set 1.062e-05 277 0.0008448 168 microtubule organizing center amigo.geneontol...
GO GO:0003735 View Gene Set 1.095e-05 158 0.0008607 169 structural constituent of ribosome amigo.geneontol...
GO GO:0004221 View Gene Set 1.094e-05 79 0.0008607 169 ubiquitin thiolesterase activity amigo.geneontol...
GO GO:0007051 View Gene Set 1.152e-05 57 0.000895 171 spindle organization amigo.geneontol...
GO GO:0071174 View Gene Set 1.147e-05 13 0.000895 171 mitotic cell cycle spindle checkpoint amigo.geneontol...
GO GO:0005488 View Gene Set 1.562e-05 12334 0.001207 173 binding amigo.geneontol...
GO GO:0000922 View Gene Set 1.587e-05 63 0.001212 174 spindle pole amigo.geneontol...
GO GO:0004842 View Gene Set 1.586e-05 191 0.001212 174 ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0003743 View Gene Set 1.784e-05 52 0.001355 176 translation initiation factor activity amigo.geneontol...
GO GO:0031080 View Gene Set 1.866e-05 10 0.001408 177 Nup107-160 complex amigo.geneontol...
GO GO:0010608 View Gene Set 1.919e-05 247 0.00144 178 posttranscriptional regulation of gene expression amigo.geneontol...
GO GO:0006368 View Gene Set 1.93e-05 49 0.00144 179 RNA elongation from RNA polymerase II promoter amigo.geneontol...
GO GO:0070925 View Gene Set 1.971e-05 57 0.001463 180 organelle assembly amigo.geneontol...
GO GO:0006354 View Gene Set 2.139e-05 53 0.001579 181 RNA elongation amigo.geneontol...
GO GO:0044455 View Gene Set 2.335e-05 133 0.001714 182 mitochondrial membrane part amigo.geneontol...
GO GO:0010564 View Gene Set 2.362e-05 161 0.001724 183 regulation of cell cycle process amigo.geneontol...
GO GO:0065003 View Gene Set 2.479e-05 763 0.0018 184 macromolecular complex assembly amigo.geneontol...
GO GO:0007094 View Gene Set 2.67e-05 12 0.001918 185 mitotic cell cycle spindle assembly checkpoint amigo.geneontol...
GO GO:0045841 View Gene Set 2.67e-05 13 0.001918 185 negative regulation of mitotic metaphase/anaphase transition amigo.geneontol...
GO GO:0051325 View Gene Set 2.851e-05 147 0.002037 187 interphase amigo.geneontol...
GO GO:0006413 View Gene Set 2.903e-05 62 0.002063 188 translational initiation amigo.geneontol...
GO GO:0051188 View Gene Set 2.96e-05 112 0.002092 189 cofactor biosynthetic process amigo.geneontol...
GO GO:0043933 View Gene Set 3.026e-05 836 0.002128 190 macromolecular complex subunit organization amigo.geneontol...
GO GO:0005839 View Gene Set 3.046e-05 20 0.00213 191 proteasome core complex amigo.geneontol...
GO GO:0071173 View Gene Set 3.119e-05 14 0.00217 192 spindle assembly checkpoint amigo.geneontol...
GO GO:0005487 View Gene Set 3.179e-05 8 0.002201 193 nucleocytoplasmic transporter activity amigo.geneontol...
GO GO:0005876 View Gene Set 3.67e-05 35 0.002527 194 spindle microtubule amigo.geneontol...
GO GO:0006405 View Gene Set 3.717e-05 44 0.002541 195 RNA export from nucleus amigo.geneontol...
GO GO:0016780 View Gene Set 3.728e-05 17 0.002541 195 phosphotransferase activity for other substituted phosphate groups amigo.geneontol...
GO GO:0000245 View Gene Set 3.972e-05 34 0.002693 197 spliceosome assembly amigo.geneontol...
GO GO:0005635 View Gene Set 4.061e-05 234 0.00274 198 nuclear envelope amigo.geneontol...
GO GO:0003899 View Gene Set 4.303e-05 42 0.002874 199 DNA-directed RNA polymerase activity amigo.geneontol...
GO GO:0034062 View Gene Set 4.303e-05 42 0.002874 199 RNA polymerase activity amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr1p22 View Gene Set 1.065e-05 84 0.001735 1 Genes in cytogenetic band chr1p22 www.broad.mit.e...
Broad chr2p21 View Gene Set 1.062e-05 41 0.001735 1 Genes in cytogenetic band chr2p21 www.broad.mit.e...
Broad chr2p24 View Gene Set 4.336e-05 52 0.004711 3 Genes in cytogenetic band chr2p24 www.broad.mit.e...
Broad chr13q12 View Gene Set 0.0001203 104 0.009806 4 Genes in cytogenetic band chr13q12 www.broad.mit.e...
Broad chr14q22 View Gene Set 0.0002268 55 0.01478 5 Genes in cytogenetic band chr14q22 www.broad.mit.e...
Broad chr1p31 View Gene Set 0.0008767 106 0.04215 6 Genes in cytogenetic band chr1p31 www.broad.mit.e...
Broad chr3q22 View Gene Set 0.001093 47 0.04215 6 Genes in cytogenetic band chr3q22 www.broad.mit.e...
Broad chr12q21 View Gene Set 0.001293 55 0.04215 6 Genes in cytogenetic band chr12q21 www.broad.mit.e...
Broad chr3q25 View Gene Set 0.001107 61 0.04215 6 Genes in cytogenetic band chr3q25 www.broad.mit.e...
Broad chr18p11 View Gene Set 0.001241 107 0.04215 6 Genes in cytogenetic band chr18p11 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 2.298e-96 825 5.496e-93 1 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 6.271e-81 1253 7.5e-78 2 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 7.296e-79 406 5.817e-76 3 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 1.379e-75 537 8.245e-73 4 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 1.546e-68 744 7.395e-66 5 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 3.441e-63 1582 1.372e-60 6 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 2.353e-61 1353 8.042e-59 7 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 1.676e-60 418 5.01e-58 8 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 7.043e-56 1180 1.872e-53 9 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN View Gene Set 1.446e-52 431 3.458e-50 10 Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 1.094e-50 589 2.379e-48 11 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP View Gene Set 4.732e-50 452 9.433e-48 12 Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 1.126e-46 415 2.072e-44 13 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 2.669e-45 666 4.56e-43 14 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 2.097e-44 435 3.343e-42 15 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 1.639e-42 577 2.45e-40 16 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 1.12e-41 681 1.576e-39 17 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 2.564e-36 757 3.408e-34 18 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN View Gene Set 3.015e-36 256 3.796e-34 19 Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad CHEN_HOXA5_TARGETS_9HR_UP View Gene Set 8.122e-36 210 9.713e-34 20 Differentially expressed genes 9 hr after tinduction of HoxA5 [Gene ID=3205] expression in a breast cancer cell line. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 7.579e-34 475 8.633e-32 21 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 1.641e-32 915 1.785e-30 22 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 4.409e-31 783 4.585e-29 23 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 6.83e-31 630 6.808e-29 24 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 1.618e-30 859 1.548e-28 25 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 5.096e-30 410 4.688e-28 26 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 9.105e-30 485 8.067e-28 27 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_6HR_DN View Gene Set 1.042e-29 160 8.904e-28 28 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 6h. www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215 View Gene Set 3.691e-29 809 3.045e-27 29 Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 4.072e-29 154 3.247e-27 30 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 9.001e-29 370 6.945e-27 31 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 2.148e-26 331 1.606e-24 32 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 2.723e-26 276 1.974e-24 33 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 3.694e-26 920 2.599e-24 34 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 2.214e-25 1209 1.513e-23 35 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_DN View Gene Set 3.817e-25 329 2.536e-23 36 Genes down-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 5.217e-25 806 3.373e-23 37 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad GENTILE_UV_HIGH_DOSE_DN View Gene Set 6.094e-25 240 3.836e-23 38 Selected genes down-regulated in WS1 (fibroblast) in response to irradiation with high dose UV-C. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 2.417e-24 184 1.482e-22 39 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 5.946e-23 739 3.555e-21 40 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 9.257e-23 314 5.401e-21 41 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 1.776e-22 212 1.011e-20 42 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 3.164e-22 180 1.76e-20 43 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN View Gene Set 7.715e-22 121 4.194e-20 44 Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 2.163e-21 768 1.15e-19 45 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 2.892e-21 351 1.504e-19 46 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN View Gene Set 3.977e-21 140 2.024e-19 47 Genes down-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_UP View Gene Set 1.16e-20 328 5.779e-19 48 Genes up-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 1.647e-20 164 8.039e-19 49 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 1.9e-20 294 9.087e-19 50 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 4.033e-20 283 1.892e-18 51 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 7.516e-20 657 3.457e-18 52 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP View Gene Set 2.975e-19 242 1.343e-17 53 Genes up-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 3.361e-19 138 1.489e-17 54 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 5.533e-19 243 2.406e-17 55 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 7.194e-19 152 3.073e-17 56 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP View Gene Set 2.45e-18 263 1.01e-16 57 Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 2.438e-18 303 1.01e-16 57 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 2.586e-18 571 1.048e-16 59 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 3.31e-18 290 1.32e-16 60 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad BENPORATH_PROLIFERATION View Gene Set 1.531e-17 140 6.003e-16 61 Set 'Proliferation Cluster': genes defined in human breast tumor expression data. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 1.961e-17 832 7.567e-16 62 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 2.037e-17 1375 7.735e-16 63 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 2.429e-17 1045 9.078e-16 64 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 4.285e-17 279 1.577e-15 65 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 4.704e-17 203 1.705e-15 66 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP View Gene Set 6.244e-17 375 2.229e-15 67 Genes up-regulated in nasopharyngeal carcinoma (NPC) positive for LMP1 [Gene ID=9260] a latent gene of Epstein-Barr virus (EBV). www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G6 View Gene Set 7.791e-17 122 2.74e-15 68 Cluster G6: genes increasingly down-regulated in NHEK cells (normal keratinocyte) after UV-B irradiation. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_DN View Gene Set 1.026e-16 200 3.556e-15 69 Genes down-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP View Gene Set 1.156e-16 192 3.951e-15 70 Genes enriched in embryonic neural and hematopoietic stem cells. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 1.956e-16 367 6.589e-15 71 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 3.01e-16 269 9.999e-15 72 Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 3.552e-16 143 1.164e-14 73 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 6.281e-16 532 2.03e-14 74 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 6.819e-16 599 2.175e-14 75 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_SCC_DN View Gene Set 6.977e-16 96 2.196e-14 76 Genes down-regulated in SCC12B2 cells (squamous cell carcinoma) by UV-B irradiation. www.broad.mit.e...
Broad STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN View Gene Set 1.533e-15 437 4.762e-14 77 Genes down-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 2.735e-15 241 8.388e-14 78 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 3.254e-15 639 9.851e-14 79 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_2HR_DN View Gene Set 5.244e-15 85 1.568e-13 80 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 2h. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP View Gene Set 6.139e-15 129 1.813e-13 81 Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 6.25e-15 332 1.823e-13 82 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 8.36e-15 138 2.409e-13 83 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad PYEON_CANCER_HEAD_AND_NECK_VS_CERVICAL_UP View Gene Set 1.001e-14 175 2.851e-13 84 Up-regulated genes in head and neck cancer compared to cervical carcinoma samples. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 3.107e-14 289 8.743e-13 85 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 7.725e-14 265 2.149e-12 86 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 2.215e-13 408 6.091e-12 87 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 3.588e-13 86 9.754e-12 88 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 5.843e-13 944 1.57e-11 89 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER View Gene Set 1.043e-12 91 2.772e-11 90 The lung adenocarcinoma TSP (tumor sequencing project) genes showing strong correlation between DNA copy number variation and gene expression. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 1.35e-12 92 3.55e-11 91 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 2.657e-12 158 6.909e-11 92 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 3.162e-12 508 8.133e-11 93 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 3.707e-12 205 9.432e-11 94 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad SEIDEN_ONCOGENESIS_BY_MET View Gene Set 5.53e-12 83 1.392e-10 95 Genes changed in xenograft tumors formed by DLD-1 or DKO-4 cells (colon cancer) overexpressing MET [Gene ID=4233]. www.broad.mit.e...
Broad GENTILE_RESPONSE_CLUSTER_D3 View Gene Set 7.936e-12 44 1.977e-10 96 Cluster d3: genes progressively down-regulated in WS1 cells (fibroblast) through 12 h irradiation with high dose UV-C. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP View Gene Set 1.004e-11 53 2.477e-10 97 The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele. www.broad.mit.e...
Broad WANG_CLIM2_TARGETS_DN View Gene Set 1.146e-11 166 2.798e-10 98 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express a dominant negative form of CLIM2 [Gene ID=8861] by a Tet Off system. www.broad.mit.e...
Broad GALE_APL_WITH_FLT3_MUTATED_UP View Gene Set 1.381e-11 52 3.337e-10 99 Genes up-regulated in acute promyelocytic leukemia (APL) patients with mutated FLT3 [Gene ID=2322]. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 1.404e-11 758 3.358e-10 100 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN View Gene Set 3.386e-11 111 8.018e-10 101 Genes down-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 5.031e-11 946 1.18e-09 102 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 5.142e-11 213 1.194e-09 103 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 5.822e-11 869 1.339e-09 104 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 6.975e-11 420 1.589e-09 105 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad TOOKER_GEMCITABINE_RESISTANCE_DN View Gene Set 1.079e-10 122 2.412e-09 106 Down-regulated genes in Calu3 cells (non-small cell lung cancer NSCLC) resistant to gemcitabine [PubChem=3461] compared to the parental line sensitive to the drug. www.broad.mit.e...
Broad TOOKER_RESPONSE_TO_BEXAROTENE_UP View Gene Set 1.079e-10 122 2.412e-09 106 Up-regulated genes in Calu3 cells (non-small lung cancer cells NSCLC) resitant to gemcitabine [PubChem=3461] in response to bexarotene [PubChem=82146]. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 3.087e-10 433 6.838e-09 108 Mitochondrial genes www.broad.mit.e...
Broad WANG_LMO4_TARGETS_DN View Gene Set 3.519e-10 327 7.722e-09 109 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN View Gene Set 4.825e-10 123 1.049e-08 110 Genes highly expressed in hepatocellular carcinoma with poor survival. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_UP View Gene Set 4.958e-10 200 1.069e-08 111 Genes up-regulated in hepatoblastoma samples compared to normal liver tissue. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_UP View Gene Set 5.064e-10 240 1.082e-08 112 Selected genes up-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP View Gene Set 5.208e-10 144 1.102e-08 113 Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones. www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN View Gene Set 5.474e-10 742 1.129e-08 114 Genes with copy number losses in primary neuroblastoma tumors. www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_DN View Gene Set 5.402e-10 211 1.129e-08 114 Genes down-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 5.455e-10 140 1.129e-08 114 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 8.133e-10 504 1.663e-08 117 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad VANHARANTA_UTERINE_FIBROID_WITH_7Q_DELETION_UP View Gene Set 1.006e-09 62 2.04e-08 118 Genes up-regulated in uterine fibroids with deletions in the 7q region vs those without the deletion. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_TTD_DN View Gene Set 1.488e-09 76 2.991e-08 119 Genes exclusively down-regulated in fibroblasts expressing the TTD mutant form of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad VERNELL_RETINOBLASTOMA_PATHWAY_UP View Gene Set 1.658e-09 39 3.305e-08 120 Cluster 1: genes up-regulated by RB1 [Gene ID=5925] CDNK2A [Gene ID=1029] and one of the E2Fs (E2F1 E2F2 or E2F3 [Gene ID=1869 1870 1871]). www.broad.mit.e...
Broad SMITH_TERT_TARGETS_UP View Gene Set 1.873e-09 128 3.703e-08 121 Genes consistently up-regulated in HMEC cells (primary mammary epithelium) upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad WILCOX_PRESPONSE_TO_ROGESTERONE_UP View Gene Set 2.506e-09 143 4.913e-08 122 Genes up-regulated in primary cultures of ovarian surface epithlium cells exposed to progesterone [PubChem=5994] for 5 days. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN View Gene Set 2.573e-09 104 5.003e-08 123 Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years). www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2 View Gene Set 2.696e-09 33 5.201e-08 124 Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples. www.broad.mit.e...
Broad LIU_VMYB_TARGETS_UP View Gene Set 3.235e-09 121 6.191e-08 125 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of v-MYB oncogenic varian of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_UP View Gene Set 3.278e-09 413 6.223e-08 126 Genes up-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_BLUE_UP View Gene Set 4.214e-09 118 7.937e-08 127 Genes from the blue module which are up-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphorylcholine (oxPAPC). www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP View Gene Set 5.02e-09 57 9.381e-08 128 DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not. www.broad.mit.e...
Broad GAZDA_DIAMOND_BLACKFAN_ANEMIA_PROGENITOR_DN View Gene Set 5.952e-09 61 1.104e-07 129 Genes down-regulated in common hematopoietic progenitor cells isolated from bone marrow of patients with Diamond-Blackfan anemia (DBA) and mutated RPS19 [Gene ID=6223]. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 6.03e-09 80 1.11e-07 130 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad REN_BOUND_BY_E2F View Gene Set 8.542e-09 47 1.56e-07 131 Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_16HR_UP View Gene Set 9.747e-09 216 1.766e-07 132 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 16 h time point that were not up-regulated at the previous time point 14 h. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_APOCRINE_VS_BASAL View Gene Set 1.027e-08 321 1.846e-07 133 Genes which best discriminate between two groups of breast cancer according the status of ESR1 and AR [Gene ID=2099 367]: apocrine (ESR1- AR+) vs basal (ESR1- AR-). www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN View Gene Set 1.548e-08 42 2.763e-07 134 Genes down-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI [Gene ID=23495]. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_14HR_UP View Gene Set 1.581e-08 150 2.801e-07 135 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 14 h time point that were not up-regulated at the previous time point 12 h. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN View Gene Set 1.75e-08 131 3.078e-07 136 Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 2.642e-08 62 4.613e-07 137 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad RICKMAN_METASTASIS_UP View Gene Set 3.141e-08 316 5.444e-07 138 Genes up-regulated in metastatic vs non-metastatic HNSCC (head and neck squamous cell carcinoma) samples. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 3.352e-08 178 5.769e-07 139 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 3.761e-08 532 6.425e-07 140 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 5.016e-08 704 8.509e-07 141 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 5.441e-08 368 9.166e-07 142 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad OSMAN_BLADDER_CANCER_UP View Gene Set 7.561e-08 387 1.265e-06 143 Genes up-regulated in blood samples from bladder cancer patients. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 8.853e-08 201 1.471e-06 144 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION View Gene Set 9.498e-08 154 1.556e-06 145 Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population. www.broad.mit.e...
Broad DE_YY1_TARGETS_DN View Gene Set 9.453e-08 90 1.556e-06 145 Genes down-regulated in SaOS-2 cells (osteosarcoma) upon knockdown of YY1 [Gene ID=7528] by RNAi. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_XPCS_DN View Gene Set 1.353e-07 75 2.201e-06 147 Genes exclusively down-regulated in fibroblasts expressing the XP/CS mutant form of ERCC3 [Gene ID=2071] after high dose UVC irradiation. www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN View Gene Set 1.426e-07 66 2.304e-06 148 Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN View Gene Set 2.011e-07 61 3.228e-06 149 Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 2.131e-07 155 3.398e-06 150 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 2.405e-07 436 3.809e-06 151 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_18HR_UP View Gene Set 2.937e-07 175 4.623e-06 152 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 18 h time point that were not up-regulated at the previous time point 16 h. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 3.325e-07 208 5.198e-06 153 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 3.735e-07 165 5.802e-06 154 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP View Gene Set 4.423e-07 135 6.826e-06 155 Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13 View Gene Set 4.605e-07 158 7.061e-06 156 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 13. www.broad.mit.e...
Broad WONG_PROTEASOME_GENE_MODULE View Gene Set 4.69e-07 46 7.145e-06 157 Genes that comprise the proteasome gene module www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES View Gene Set 5.004e-07 128 7.528e-06 158 Genes involved in DNA replication compiled manually by the authors. www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP View Gene Set 4.974e-07 80 7.528e-06 158 Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 5.831e-07 68 8.717e-06 160 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 6.062e-07 509 9.006e-06 161 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_DN View Gene Set 7.639e-07 100 1.128e-05 162 Genes down-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 7.792e-07 437 1.143e-05 163 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 View Gene Set 8.287e-07 681 1.209e-05 164 The 'group 3 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 9.257e-07 427 1.342e-05 165 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C0 View Gene Set 9.6e-07 106 1.383e-05 166 Cluster 0: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad NAKAMURA_CANCER_MICROENVIRONMENT_DN View Gene Set 1.157e-06 45 1.647e-05 167 Genes down-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 1.151e-06 46 1.647e-05 167 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad OUELLET_CULTURED_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 1.296e-06 66 1.834e-05 169 Genes up-regulated in pirmary cultures of epithelial ovarian cancer (EOC): invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...
Broad BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_UP View Gene Set 1.619e-06 116 2.267e-05 170 Up-regulated genes in MDA-MB-435 cells (breast cancer) undergoing G2/M arrest after treatment with 2-methoxyestradiol (2ME2)[PubChem=1573]. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C1 View Gene Set 1.621e-06 68 2.267e-05 170 Cluster 1: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad NAGASHIMA_NRG1_SIGNALING_UP View Gene Set 1.651e-06 171 2.296e-05 172 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [Gene ID=3084]. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_DN View Gene Set 1.871e-06 161 2.572e-05 173 Genes down-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad FAELT_B_CLL_WITH_VH3_21_DN View Gene Set 1.868e-06 47 2.572e-05 173 Genes changed in samples from B-CLL (B-cell chronic lymphocytic leukemia) using the immunoglobulin heavy chain VH3-21 gene. www.broad.mit.e...
Broad BILD_CTNNB1_ONCOGENIC_SIGNATURE View Gene Set 2.093e-06 72 2.86e-05 175 Genes selected in supervised analyses to discriminate cells expressing activated beta-catenin (CTNNB1) [Gene ID=1499] oncogene from control cells expressing GFP. www.broad.mit.e...
Broad LAIHO_COLORECTAL_CANCER_SERRATED_UP View Gene Set 2.416e-06 108 3.283e-05 176 Genes up-regulated in serrated vs conventional colorectal carcinoma (CRC) samples. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 2.515e-06 53 3.398e-05 177 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad NOUZOVA_TRETINOIN_AND_H4_ACETYLATION View Gene Set 3.02e-06 124 4.058e-05 178 Genes whose CpG islands showed greatly increased histone H4 acetylation in NB4 cells (acute promyelocytic leukemia APL) upon treatment with tretinoin [PubChem=5538]. www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN View Gene Set 3.431e-06 148 4.585e-05 179 Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi. www.broad.mit.e...
Broad GENTILE_UV_RESPONSE_CLUSTER_D4 View Gene Set 3.76e-06 49 4.996e-05 180 Cluster d4: genes progressively down-regulated in WS1 cells (fibroblast) through 12 h after irradiation with high dose UV-C. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_WITH_LOH_IN_CHR9Q View Gene Set 4.165e-06 106 5.505e-05 181 Genes down-regulated in urothelial cell carcinoma (UCC) tumors with LOH on 9q as compared to the tumors showing retention. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN View Gene Set 4.371e-06 60 5.745e-05 182 Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701]. www.broad.mit.e...
Broad SLEBOS_HEAD_AND_NECK_CANCER_WITH_HPV_UP View Gene Set 4.729e-06 72 6.181e-05 183 Genes up-regulated in head and neck squamous cell carcinoma (HNSCC) samples positive for HPV compared to the HPV-negative tumors. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_DN View Gene Set 5.834e-06 230 7.584e-05 184 Genes down-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN View Gene Set 5.986e-06 76 7.74e-05 185 Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C5 View Gene Set 6.232e-06 46 8.015e-05 186 Cluster 5: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 6.372e-06 139 8.151e-05 187 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_UP View Gene Set 6.495e-06 64 8.264e-05 188 Genes up-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 6.555e-06 469 8.296e-05 189 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN View Gene Set 6.635e-06 49 8.353e-05 190 Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_BASAL_VS_LULMINAL View Gene Set 7.455e-06 317 9.337e-05 191 Genes which best discriminated between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: basal (ESR1- AR-) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad TANG_SENESCENCE_TP53_TARGETS_DN View Gene Set 7.704e-06 40 9.597e-05 192 Genes down-regulated in WI-38 cells (senescent primary fibroblasts) after inactivation of TP53 [Gene ID=7157] by GSE56 polypeptide. www.broad.mit.e...
Broad OKUMURA_INFLAMMATORY_RESPONSE_LPS View Gene Set 8.003e-06 179 9.918e-05 193 Genes up-regulated in mast cells (MC) after stimulation with a bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad YU_MYC_TARGETS_UP View Gene Set 9.298e-06 37 0.0001146 194 Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609]. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK View Gene Set 9.913e-06 100 0.0001216 195 Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_6HR_DN View Gene Set 1.055e-05 159 0.0001288 196 Genes down-regulated in primary fibroblast cell culture point after infection with HCMV (AD169 strain) at 6 h time point that were not down-regulated at the previous time point 4 h. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_INCIPIENT_DN View Gene Set 1.088e-05 164 0.0001321 197 Genes down-regulated in patients at the incipient stage of Alzheimer's disease. www.broad.mit.e...
Broad AMUNDSON_RESPONSE_TO_ARSENITE View Gene Set 1.231e-05 180 0.0001487 198 Genes discriminating responses to sodium arsenite [PubChem ID=26435] from other stresses. www.broad.mit.e...
Broad DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN View Gene Set 1.452e-05 303 0.0001746 199 Genes down-regulated in T-PLL cells (T-cell prolymphocytic leukemia) bearing the inv(14)/t(14:14) chromosomal aberration. www.broad.mit.e...
Broad BARRIER_CANCER_RELAPSE_TUMOR_SAMPLE_UP View Gene Set 1.518e-05 16 0.0001815 200 Up-regulated genes in tumor samples from colon cancer patients who developed recurrence of the disease. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_SPLICEOSOME View Gene Set 4.385e-14 118 8.157e-12 1 Spliceosome www.broad.mit.e...
Broad KEGG_CELL_CYCLE View Gene Set 9.943e-09 128 9.247e-07 2 Cell cycle www.broad.mit.e...
Broad KEGG_PROTEASOME View Gene Set 2.438e-07 48 1.512e-05 3 Proteasome www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 1.216e-05 98 0.0005655 4 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 1.712e-05 138 0.000637 5 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION View Gene Set 0.0001017 59 0.002366 6 RNA degradation www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 9.902e-05 36 0.002366 6 DNA replication www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR View Gene Set 9.041e-05 23 0.002366 6 Mismatch repair www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 0.0002612 44 0.005397 9 Nucleotide excision repair www.broad.mit.e...
Broad KEGG_RNA_POLYMERASE View Gene Set 0.001644 29 0.03058 10 RNA polymerase www.broad.mit.e...
Broad KEGG_OXIDATIVE_PHOSPHORYLATION View Gene Set 0.001857 135 0.03141 11 Oxidative phosphorylation www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS View Gene Set 0.002327 41 0.03607 12 Aminoacyl-tRNA biosynthesis www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION View Gene Set 0.003165 28 0.04529 13 Homologous recombination www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 7.569e-22 306 3.255e-19 1 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 1.825e-18 157 3.925e-16 2 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 3.051e-15 110 4.373e-13 3 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 1.083e-13 103 1.164e-11 4 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 4.455e-13 89 3.832e-11 5 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 4.953e-12 102 3.55e-10 6 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 1.195e-11 415 7.341e-10 7 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A View Gene Set 2.226e-10 63 1.196e-08 8 Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 3.873e-10 92 1.85e-08 9 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 4.541e-10 76 1.953e-08 10 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE View Gene Set 6.476e-10 71 2.532e-08 11 Genes involved in Regulation of APC/C activators between G1/S and early anaphase www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 1.068e-09 63 3.828e-08 12 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX View Gene Set 2.089e-09 52 6.632e-08 13 Genes involved in CDT1 association with the CDC6:ORC:origin complex www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 2.313e-09 61 6.632e-08 13 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 2.313e-09 95 6.632e-08 13 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 4.652e-09 183 1.25e-07 16 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC View Gene Set 5.185e-09 57 1.311e-07 17 Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 2.394e-08 50 5.72e-07 18 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ View Gene Set 3.033e-08 58 6.864e-07 19 Genes involved in Cyclin E associated events during G1/S transition www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 4.068e-08 90 8.747e-07 20 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 2.413e-07 128 4.941e-06 21 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 3.423e-07 102 6.4e-06 22 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 3.408e-07 43 6.4e-06 22 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 3.578e-07 42 6.41e-06 24 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 4.827e-07 188 8.303e-06 25 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE View Gene Set 6.917e-07 43 1.102e-05 26 Genes involved in p53-Independent DNA Damage Response www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 6.77e-07 32 1.102e-05 26 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 7.246e-07 103 1.113e-05 28 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 View Gene Set 9.537e-07 48 1.414e-05 29 Genes involved in SCF-beta-TrCP mediated degradation of Emi1 www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 1.259e-06 29 1.804e-05 30 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G View Gene Set 1.529e-06 47 2.121e-05 31 Genes involved in Vif-mediated degradation of APOBEC3G www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21 View Gene Set 1.603e-06 52 2.153e-05 32 Genes involved in SCF(Skp2)-mediated degradation of p2721 www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 2.224e-06 37 2.898e-05 33 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 2.981e-06 30 3.77e-05 34 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE View Gene Set 3.445e-06 137 4.232e-05 35 Genes involved in Influenza Life Cycle www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53 View Gene Set 4.297e-06 46 5.133e-05 36 Genes involved in Stabilization of p53 www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 5.43e-06 142 5.987e-05 37 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_INITIATION View Gene Set 5.409e-06 39 5.987e-05 37 Genes involved in HIV-1 Transcription Initiation www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE View Gene Set 5.422e-06 47 5.987e-05 37 Genes involved in Regulation of ornithine decarboxylase (ODC) www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 6.565e-06 31 7.058e-05 40 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 9.054e-06 120 9.496e-05 41 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 1.553e-05 31 0.000159 42 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX View Gene Set 2.341e-05 18 0.0002341 43 Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION View Gene Set 2.405e-05 83 0.000235 44 Genes involved in RNA Polymerase II Transcription www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN View Gene Set 2.961e-05 29 0.0002829 45 Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT View Gene Set 3.144e-05 58 0.0002931 46 Genes involved in Signaling by Wnt www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME View Gene Set 3.237e-05 59 0.0002931 46 Genes involved in Transcription of the HIV genome www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 3.272e-05 29 0.0002931 46 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 3.861e-05 33 0.0003256 49 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS View Gene Set 3.841e-05 215 0.0003256 49 Genes involved in Metabolism of proteins www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION View Gene Set 3.732e-05 120 0.0003256 49 Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 6.503e-05 30 0.0005378 52 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 7.014e-05 77 0.0005691 53 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B View Gene Set 0.0001401 18 0.001116 54 Genes involved in APC/C:Cdc20 mediated degradation of Cyclin B www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 0.0001487 31 0.001163 55 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 0.0001751 124 0.001344 56 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER View Gene Set 0.0001922 33 0.001425 57 Genes involved in Global Genomic NER (GG-NER) www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS View Gene Set 0.0001917 20 0.001425 57 Genes involved in Lagging Strand Synthesis www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 0.0002363 120 0.001723 59 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX View Gene Set 0.0002818 32 0.00202 60 Genes involved in Formation of the Early Elongation Complex www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 0.0003112 28 0.002159 61 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_GLUCOSE_TRANSPORT View Gene Set 0.00031 38 0.002159 61 Genes involved in Glucose transport www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION View Gene Set 0.0003202 40 0.002186 63 Genes involved in tRNA Aminoacylation www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY View Gene Set 0.00043 38 0.002719 64 Genes involved in mRNA Splicing - Minor Pathway www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 0.0004185 49 0.002719 64 Genes involved in Nucleotide Excision Repair www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE View Gene Set 0.0004222 20 0.002719 64 Genes involved in RNA Polymerase I Promoter Escape www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_INITIATION View Gene Set 0.0004295 24 0.002719 64 Genes involved in RNA PolymeraseTranscription Initiation www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_TERMINATION View Gene Set 0.0004115 21 0.002719 64 Genes involved in RNA PolymeraseTranscription Termination www.broad.mit.e...
Broad REACTOME_E2F_ENABLED_INHIBITION_OF_PRE_REPLICATION_COMPLEX_FORMATION View Gene Set 0.0004516 10 0.002774 69 Genes involved in E2F-enabled inhibition of pre-replication complex formation www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC View Gene Set 0.0004516 17 0.002774 69 Genes involved in Phosphorylation of the APC/C www.broad.mit.e...
Broad REACTOME_GENERIC_TRANSCRIPTION_PATHWAY View Gene Set 0.0005093 35 0.003085 71 Genes involved in Generic Transcription Pathway www.broad.mit.e...
Broad REACTOME_ELECTRON_TRANSPORT_CHAIN View Gene Set 0.0005848 75 0.003493 72 Genes involved in Electron Transport Chain www.broad.mit.e...
Broad REACTOME_APOPTOSIS View Gene Set 0.0006741 129 0.003971 73 Genes involved in Apoptosis www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE View Gene Set 0.0007951 82 0.00462 74 Genes involved in RNA PolymerasePromoter Clearance www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_5_TO_3_EXORIBONUCLEASE View Gene Set 0.0008864 13 0.005082 75 Genes involved in mRNA Decay by 5' to 3' Exoribonuclease www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER View Gene Set 0.0009212 44 0.005212 76 Genes involved in Transcription-coupled NER (TC-NER) www.broad.mit.e...
Broad REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION View Gene Set 0.0009858 100 0.005505 77 Genes involved in Influenza Viral RNA Transcription and Replication www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 0.001032 97 0.005689 78 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_MRNA_PROCESSING View Gene Set 0.001131 32 0.006153 79 Genes involved in mRNA Processing www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_LICENSING_FACTORS_WITH_THE_PREREPLICATIVE_COMPLEX View Gene Set 0.001263 12 0.006788 80 Genes involved in Association of licensing factors with the pre-replicative complex www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_TRIC_CCT_WITH_TARGET_PROTEINS_DURING_BIOSYNTHESIS View Gene Set 0.001391 29 0.007385 81 Genes involved in Association of TriC/CCT with target proteins during biosynthesis www.broad.mit.e...
Broad REACTOME_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE View Gene Set 0.001458 26 0.007648 82 Genes involved in RNA Pol II CTD phosphorylation and interaction with CE www.broad.mit.e...
Broad REACTOME_CDC6_ASSOCIATION_WITH_THE_ORC:ORIGIN_COMPLEX View Gene Set 0.001568 11 0.008121 83 Genes involved in CDC6 association with the ORC:origin complex www.broad.mit.e...
Broad REACTOME_CONVERSION_FROM_APC_CDC20_TO_APC_CDH1_IN_LATE_ANAPHASE View Gene Set 0.001627 17 0.008327 84 Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase www.broad.mit.e...
Broad REACTOME_POLYMERASE_SWITCHING View Gene Set 0.001661 14 0.008401 85 Genes involved in Polymerase switching www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT View Gene Set 0.001959 106 0.009796 86 Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_ELONGATION View Gene Set 0.002154 41 0.01065 87 Genes involved in HIV-1 Transcription Elongation www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM View Gene Set 0.002788 22 0.01362 88 Genes involved in Pyrimidine metabolism www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS View Gene Set 0.002928 95 0.01415 89 Genes involved in Formation of a pool of free 40S subunits www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 0.003425 45 0.01636 90 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_GG_NER View Gene Set 0.003609 20 0.01705 91 Genes involved in Dual incision reaction in GG-NER www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS View Gene Set 0.003835 18 0.01793 92 Genes involved in MicroRNA biogenesis www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION View Gene Set 0.004143 34 0.01915 93 Genes involved in RNA PolymeraseChain Elongation www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 0.004444 84 0.02012 94 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_INSULIN_SYNTHESIS_AND_SECRETION View Gene Set 0.004429 129 0.02012 94 Genes involved in Insulin Synthesis and Secretion www.broad.mit.e...
Broad REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION View Gene Set 0.00489 23 0.02168 96 Genes involved in Cytosolic tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE View Gene Set 0.004855 15 0.02168 96 Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 0.005836 11 0.02561 98 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION View Gene Set 0.006234 20 0.02708 99 Genes involved in Mitochondrial tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_VITAMINS_AND_COFACTORS View Gene Set 0.006856 42 0.02948 100 Genes involved in Metabolism of vitamins and cofactors www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX View Gene Set 0.007252 49 0.03088 101 Genes involved in Formation of the ternary complex and subsequently the 43S complex www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S View Gene Set 0.00768 22 0.03206 102 Genes involved in E2F transcriptional targets at G1/S www.broad.mit.e...
Broad REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES View Gene Set 0.007645 62 0.03206 102 Genes involved in Loss of Nlp from mitotic centrosomes www.broad.mit.e...
Broad REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT View Gene Set 0.008212 23 0.03395 104 Genes involved in Abortive elongation of HIV-1 transcript in the absence of Tat www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR View Gene Set 0.008733 15 0.03576 105 Genes involved in Homologous Recombination Repair www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS View Gene Set 0.009363 11 0.03798 106 Genes involved in Purine ribonucleoside monophosphate biosynthesis www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 0.01005 71 0.04037 107 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_VIRAL_MRNA_TRANSLATION View Gene Set 0.01084 84 0.04315 108 Genes involved in Viral mRNA Translation www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_TERMINATION View Gene Set 0.01122 17 0.04427 109 Genes involved in RNA Polymerase III Transcription Termination www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION View Gene Set 0.01237 72 0.04835 110 Genes involved in Centrosome maturation www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad TACTTGA MIR-26A MIR-26B View Gene Set 2.256e-09 258 3.239e-07 1 Targets of MicroRNA TACTTGA MIR-26A MIR-26B www.broad.mit.e... MIR-26A... MIR-26B...
Broad ATGTTAA MIR-302C View Gene Set 2.931e-09 206 3.239e-07 1 Targets of MicroRNA ATGTTAA MIR-302C www.broad.mit.e... MIR-302C...
Broad AGCACTT MIR-93 MIR-302A MIR-302B MIR-302C MIR-302D MIR-372 MIR-373 MIR-520E MIR-520A MIR-526B MIR-520B MIR-520C MIR-520D View Gene Set 1.452e-07 281 8.301e-06 3 Targets of MicroRNA AGCACTT MIR-93 MIR-302A MIR-302B MIR-302C MIR-302D MIR-372 MIR-373 MIR-520E MIR-520A MIR-526B MIR-520B MIR-520C MIR-520D www.broad.mit.e... MIR-93... MIR-302A... MIR-302B... MIR-302C... MIR-302D... MIR-372... MIR-373... MIR-520E... MIR-520A... MIR-526B... MIR-520B... MIR-520C... MIR-520D...
Broad ATTCTTT MIR-186 View Gene Set 1.503e-07 232 8.301e-06 3 Targets of MicroRNA ATTCTTT MIR-186 www.broad.mit.e... MIR-186...
Broad TAATGTG MIR-323 View Gene Set 2.966e-07 135 1.311e-05 5 Targets of MicroRNA TAATGTG MIR-323 www.broad.mit.e... MIR-323...
Broad GCACTTT MIR-17-5P MIR-20A MIR-106A MIR-106B MIR-20B MIR-519D View Gene Set 6.188e-07 506 2.279e-05 6 Targets of MicroRNA GCACTTT MIR-17-5P MIR-20A MIR-106A MIR-106B MIR-20B MIR-519D www.broad.mit.e... MIR-17-5P... MIR-20A... MIR-106A... MIR-106B... MIR-20B... MIR-519D...
Broad TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D View Gene Set 1.111e-06 418 3.069e-05 7 Targets of MicroRNA TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D www.broad.mit.e... MIR-181A... MIR-181B... MIR-181C... MIR-181D...
Broad GTATTAT MIR-369-3P View Gene Set 1.064e-06 174 3.069e-05 7 Targets of MicroRNA GTATTAT MIR-369-3P www.broad.mit.e... MIR-369-3P...
Broad ACTTTAT MIR-142-5P View Gene Set 1.533e-06 250 3.764e-05 9 Targets of MicroRNA ACTTTAT MIR-142-5P www.broad.mit.e... MIR-142-5P...
Broad CATGTAA MIR-496 View Gene Set 3.101e-06 150 6.854e-05 10 Targets of MicroRNA CATGTAA MIR-496 www.broad.mit.e... MIR-496...
Broad TTTGCAG MIR-518A-2 View Gene Set 4.7e-06 174 8.655e-05 11 Targets of MicroRNA TTTGCAG MIR-518A-2 www.broad.mit.e... MIR-518A-2...
Broad ATGTACA MIR-493 View Gene Set 4.539e-06 261 8.655e-05 11 Targets of MicroRNA ATGTACA MIR-493 www.broad.mit.e... MIR-493...
Broad TGTTTAC MIR-30A-5P MIR-30C MIR-30D MIR-30B MIR-30E-5P View Gene Set 6.797e-06 492 0.0001155 13 Targets of MicroRNA TGTTTAC MIR-30A-5P MIR-30C MIR-30D MIR-30B MIR-30E-5P www.broad.mit.e... MIR-30A-5P... MIR-30C... MIR-30D... MIR-30B... MIR-30E-5P...
Broad AATGTGA MIR-23A MIR-23B View Gene Set 7.485e-06 356 0.0001182 14 Targets of MicroRNA AATGTGA MIR-23A MIR-23B www.broad.mit.e... MIR-23A... MIR-23B...
Broad TTGCACT MIR-130A MIR-301 MIR-130B View Gene Set 1.299e-05 335 0.0001595 15 Targets of MicroRNA TTGCACT MIR-130A MIR-301 MIR-130B www.broad.mit.e... MIR-130A... MIR-301... MIR-130B...
Broad TCTATGA MIR-376A MIR-376B View Gene Set 1.272e-05 71 0.0001595 15 Targets of MicroRNA TCTATGA MIR-376A MIR-376B www.broad.mit.e... MIR-376A... MIR-376B...
Broad CTTTGTA MIR-524 View Gene Set 1.185e-05 375 0.0001595 15 Targets of MicroRNA CTTTGTA MIR-524 www.broad.mit.e... MIR-524...
Broad TTTGTAG MIR-520D View Gene Set 1.116e-05 279 0.0001595 15 Targets of MicroRNA TTTGTAG MIR-520D www.broad.mit.e... MIR-520D...
Broad ACTGAAA MIR-30A-3P MIR-30E-3P View Gene Set 2.881e-05 165 0.0003351 19 Targets of MicroRNA ACTGAAA MIR-30A-3P MIR-30E-3P www.broad.mit.e... MIR-30A-3P... MIR-30E-3P...
Broad TGCACTG MIR-148A MIR-152 MIR-148B View Gene Set 3.945e-05 252 0.0004359 20 Targets of MicroRNA TGCACTG MIR-148A MIR-152 MIR-148B www.broad.mit.e... MIR-148A... MIR-152... MIR-148B...
Broad ACCATTT MIR-522 View Gene Set 4.761e-05 137 0.000501 21 Targets of MicroRNA ACCATTT MIR-522 www.broad.mit.e... MIR-522...
Broad ATACTGT MIR-144 View Gene Set 5.143e-05 173 0.0005167 22 Targets of MicroRNA ATACTGT MIR-144 www.broad.mit.e... MIR-144...
Broad GTGCAAT MIR-25 MIR-32 MIR-92 MIR-363 MIR-367 View Gene Set 5.432e-05 260 0.0005219 23 Targets of MicroRNA GTGCAAT MIR-25 MIR-32 MIR-92 MIR-363 MIR-367 www.broad.mit.e... MIR-25... MIR-32... MIR-92... MIR-363... MIR-367...
Broad CAGTATT MIR-200B MIR-200C MIR-429 View Gene Set 0.0001682 386 0.001549 24 Targets of MicroRNA CAGTATT MIR-200B MIR-200C MIR-429 www.broad.mit.e... MIR-200B... MIR-200C... MIR-429...
Broad TGTGTGA MIR-377 View Gene Set 0.0002101 162 0.001857 25 Targets of MicroRNA TGTGTGA MIR-377 www.broad.mit.e... MIR-377...
Broad ATCATGA MIR-433 View Gene Set 0.0002232 94 0.001897 26 Targets of MicroRNA ATCATGA MIR-433 www.broad.mit.e... MIR-433...
Broad ATATGCA MIR-448 View Gene Set 0.0002528 184 0.002069 27 Targets of MicroRNA ATATGCA MIR-448 www.broad.mit.e... MIR-448...
Broad TGCTTTG MIR-330 View Gene Set 0.0002627 278 0.002074 28 Targets of MicroRNA TGCTTTG MIR-330 www.broad.mit.e... MIR-330...
Broad TGCACTT MIR-519C MIR-519B MIR-519A View Gene Set 0.0003129 377 0.002384 29 Targets of MicroRNA TGCACTT MIR-519C MIR-519B MIR-519A www.broad.mit.e... MIR-519C... MIR-519B... MIR-519A...
Broad TGAGATT MIR-216 View Gene Set 0.0003305 90 0.002435 30 Targets of MicroRNA TGAGATT MIR-216 www.broad.mit.e... MIR-216...
Broad TAGCTTT MIR-9 View Gene Set 0.0003912 198 0.002789 31 Targets of MicroRNA TAGCTTT MIR-9 www.broad.mit.e... MIR-9...
Broad TGCCTTA MIR-124A View Gene Set 0.0005035 471 0.003477 32 Targets of MicroRNA TGCCTTA MIR-124A www.broad.mit.e... MIR-124A...
Broad CTTGTAT MIR-381 View Gene Set 0.0006257 167 0.004147 33 Targets of MicroRNA CTTGTAT MIR-381 www.broad.mit.e... MIR-381...
Broad ACACTAC MIR-142-3P View Gene Set 0.000638 110 0.004147 33 Targets of MicroRNA ACACTAC MIR-142-3P www.broad.mit.e... MIR-142-3P...
Broad TTTTGAG MIR-373 View Gene Set 0.0007631 189 0.004818 35 Targets of MicroRNA TTTTGAG MIR-373 www.broad.mit.e... MIR-373...
Broad GTTAAAG MIR-302B View Gene Set 0.0007936 58 0.004872 36 Targets of MicroRNA GTTAAAG MIR-302B www.broad.mit.e... MIR-302B...
Broad TCTGATA MIR-361 View Gene Set 0.0008813 74 0.005264 37 Targets of MicroRNA TCTGATA MIR-361 www.broad.mit.e... MIR-361...
Broad CATTTCA MIR-203 View Gene Set 0.001239 235 0.007131 38 Targets of MicroRNA CATTTCA MIR-203 www.broad.mit.e... MIR-203...
Broad AGCATTA MIR-155 View Gene Set 0.001258 118 0.007131 38 Targets of MicroRNA AGCATTA MIR-155 www.broad.mit.e... MIR-155...
Broad TTTGCAC MIR-19A MIR-19B View Gene Set 0.001389 440 0.007677 40 Targets of MicroRNA TTTGCAC MIR-19A MIR-19B www.broad.mit.e... MIR-19A... MIR-19B...
Broad TTGCCAA MIR-182 View Gene Set 0.001532 274 0.00826 41 Targets of MicroRNA TTGCCAA MIR-182 www.broad.mit.e... MIR-182...
Broad TATTATA MIR-374 View Gene Set 0.001851 237 0.009737 42 Targets of MicroRNA TATTATA MIR-374 www.broad.mit.e... MIR-374...
Broad AACTGAC MIR-223 View Gene Set 0.00193 84 0.009921 43 Targets of MicroRNA AACTGAC MIR-223 www.broad.mit.e... MIR-223...
Broad TCTGATC MIR-383 View Gene Set 0.002639 37 0.0132 44 Targets of MicroRNA TCTGATC MIR-383 www.broad.mit.e... MIR-383...
Broad CTTTGCA MIR-527 View Gene Set 0.002688 198 0.0132 44 Targets of MicroRNA CTTTGCA MIR-527 www.broad.mit.e... MIR-527...
Broad GCACCTT MIR-18A MIR-18B View Gene Set 0.003013 90 0.01448 46 Targets of MicroRNA GCACCTT MIR-18A MIR-18B www.broad.mit.e... MIR-18A... MIR-18B...
Broad ACTGTGA MIR-27A MIR-27B View Gene Set 0.003197 385 0.01485 47 Targets of MicroRNA ACTGTGA MIR-27A MIR-27B www.broad.mit.e... MIR-27A... MIR-27B...
Broad GTGACTT MIR-224 View Gene Set 0.003226 135 0.01485 47 Targets of MicroRNA GTGACTT MIR-224 www.broad.mit.e... MIR-224...
Broad ACATTCC MIR-1 MIR-206 View Gene Set 0.004407 248 0.01948 49 Targets of MicroRNA ACATTCC MIR-1 MIR-206 www.broad.mit.e... MIR-1... MIR-206...
Broad ATAGGAA MIR-202 View Gene Set 0.004335 86 0.01948 49 Targets of MicroRNA ATAGGAA MIR-202 www.broad.mit.e... MIR-202...
Broad CAGCTTT MIR-320 View Gene Set 0.004536 220 0.01966 51 Targets of MicroRNA CAGCTTT MIR-320 www.broad.mit.e... MIR-320...
Broad TGTATGA MIR-485-3P View Gene Set 0.004741 116 0.02015 52 Targets of MicroRNA TGTATGA MIR-485-3P www.broad.mit.e... MIR-485-3P...
Broad AAAGGAT MIR-501 View Gene Set 0.005426 107 0.02193 53 Targets of MicroRNA AAAGGAT MIR-501 www.broad.mit.e... MIR-501...
Broad GGGCATT MIR-365 View Gene Set 0.005557 102 0.02193 53 Targets of MicroRNA GGGCATT MIR-365 www.broad.mit.e... MIR-365...
Broad GCAAAAA MIR-129 View Gene Set 0.005477 152 0.02193 53 Targets of MicroRNA GCAAAAA MIR-129 www.broad.mit.e... MIR-129...
Broad GTAAACC MIR-299-5P View Gene Set 0.00551 44 0.02193 53 Targets of MicroRNA GTAAACC MIR-299-5P www.broad.mit.e... MIR-299-5P...
Broad CAGTGTT MIR-141 MIR-200A View Gene Set 0.005889 262 0.02244 57 Targets of MicroRNA CAGTGTT MIR-141 MIR-200A www.broad.mit.e... MIR-141... MIR-200A...
Broad ATGTTTC MIR-494 View Gene Set 0.005795 136 0.02244 57 Targets of MicroRNA ATGTTTC MIR-494 www.broad.mit.e... MIR-494...
Broad GTGCCAT MIR-183 View Gene Set 0.006105 152 0.02287 59 Targets of MicroRNA GTGCCAT MIR-183 www.broad.mit.e... MIR-183...
Broad ATACCTC MIR-202 View Gene Set 0.006602 150 0.02392 60 Targets of MicroRNA ATACCTC MIR-202 www.broad.mit.e... MIR-202...
Broad ACTGTAG MIR-139 View Gene Set 0.006509 111 0.02392 60 Targets of MicroRNA ACTGTAG MIR-139 www.broad.mit.e... MIR-139...
Broad ATGCAGT MIR-217 View Gene Set 0.007121 93 0.02498 62 Targets of MicroRNA ATGCAGT MIR-217 www.broad.mit.e... MIR-217...
Broad AAGCACT MIR-520F View Gene Set 0.007018 198 0.02498 62 Targets of MicroRNA AAGCACT MIR-520F www.broad.mit.e... MIR-520F...
Broad TATCTGG MIR-488 View Gene Set 0.007847 49 0.0271 64 Targets of MicroRNA TATCTGG MIR-488 www.broad.mit.e... MIR-488...
Broad ACATATC MIR-190 View Gene Set 0.009222 50 0.03135 65 Targets of MicroRNA ACATATC MIR-190 www.broad.mit.e... MIR-190...
Broad CAAGGAT MIR-362 View Gene Set 0.01056 53 0.03534 66 Targets of MicroRNA CAAGGAT MIR-362 www.broad.mit.e... MIR-362...
Broad TTGGAGA MIR-515-5P MIR-519E View Gene Set 0.0108 120 0.03561 67 Targets of MicroRNA TTGGAGA MIR-515-5P MIR-519E www.broad.mit.e... MIR-515-5P... MIR-519E...
Broad ATTACAT MIR-380-3P View Gene Set 0.01251 87 0.04067 68 Targets of MicroRNA ATTACAT MIR-380-3P www.broad.mit.e... MIR-380-3P...
Broad TCCAGAT MIR-516-5P View Gene Set 0.0141 93 0.04517 69 Targets of MicroRNA TCCAGAT MIR-516-5P www.broad.mit.e... MIR-516-5P...
Broad AGTCAGC MIR-345 View Gene Set 0.0149 52 0.04704 70 Targets of MicroRNA AGTCAGC MIR-345 www.broad.mit.e... MIR-345...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SCGGAAGY_V$ELK1_02 View Gene Set 1.736e-10 784 1.068e-07 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 1.655e-09 580 5.089e-07 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad TMTCGCGANR_UNKNOWN View Gene Set 1.598e-05 100 0.003276 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TMTCGCGANR. Motif does not match any known transcription factor www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN View Gene Set 5.754e-05 130 0.008846 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad ACTAYRNNNCCCR_UNKNOWN View Gene Set 0.0001797 293 0.0221 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACTAYRNNNCCCR. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.0002679 289 0.02746 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GNF2_SMC4L1 View Gene Set 9.525e-15 75 4.067e-12 1 Neighborhood of SMC4L1 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 2.409e-14 78 5.144e-12 2 Neighborhood of RAN www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 5.656e-14 256 8.051e-12 3 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_PPP2R5E View Gene Set 2.116e-13 76 1.807e-11 4 Neighborhood of PPP2R5E www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 1.943e-13 82 1.807e-11 4 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_RAB11A View Gene Set 2.734e-13 53 1.946e-11 6 Neighborhood of RAB11A www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 1.51e-12 52 9.208e-11 7 Neighborhood of KPNB1 www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 3.574e-12 143 1.696e-10 8 Neighborhood of RAB10 www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 3.237e-12 54 1.696e-10 8 Neighborhood of RBBP6 www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 1.462e-11 137 5.9e-10 10 Neighborhood of RFC4 www.broad.mit.e...
Broad GCM_HBP1 View Gene Set 1.52e-11 54 5.9e-10 10 Neighborhood of HBP1 www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 1.878e-11 73 6.684e-10 12 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 2.829e-11 157 9.293e-10 13 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 4.042e-11 155 1.207e-09 14 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 4.241e-11 62 1.207e-09 14 Neighborhood of PCNA www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 5.762e-11 49 1.538e-09 16 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 1.307e-10 256 2.621e-09 17 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 1.35e-10 247 2.621e-09 17 Neighborhood of SOD1 www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 1.148e-10 98 2.621e-09 17 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 1.328e-10 45 2.621e-09 17 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 1.249e-10 57 2.621e-09 17 Neighborhood of NPM1 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 1.283e-10 33 2.621e-09 17 Neighborhood of PPP6C www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 1.983e-10 93 3.528e-09 23 Neighborhood of PTPN11 www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 1.963e-10 61 3.528e-09 23 Neighborhood of XRCC5 www.broad.mit.e...
Broad GCM_ZNF198 View Gene Set 6.705e-10 98 1.145e-08 25 Neighborhood of ZNF198 www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 8.446e-10 45 1.387e-08 26 Neighborhood of CKS2 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 9.885e-10 316 1.507e-08 27 Neighborhood of RAD23A www.broad.mit.e...
Broad GCM_UBE2N View Gene Set 9.607e-10 125 1.507e-08 27 Neighborhood of UBE2N www.broad.mit.e...
Broad GNF2_DENR View Gene Set 1.258e-09 39 1.852e-08 29 Neighborhood of DENR www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 1.435e-09 56 2.042e-08 30 Neighborhood of CDC2 www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 2.03e-09 150 2.75e-08 31 Neighborhood of PPP1CC www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 2.061e-09 57 2.75e-08 31 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 2.739e-09 45 3.544e-08 33 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 2.859e-09 43 3.591e-08 34 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 3.335e-09 72 4.068e-08 35 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 3.509e-09 69 4.162e-08 36 Neighborhood of SP3 www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 5.347e-09 159 6.171e-08 37 Neighborhood of RAD23B www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 6.748e-09 62 7.582e-08 38 Neighborhood of CCNA2 www.broad.mit.e...
Broad GCM_ERBB2IP View Gene Set 7.782e-09 57 8.52e-08 39 Neighborhood of ERBB2IP www.broad.mit.e...
Broad MORF_DEK View Gene Set 1.016e-08 229 1.085e-07 40 Neighborhood of DEK www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 1.209e-08 100 1.259e-07 41 Neighborhood of PSMC2 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 1.379e-08 53 1.402e-07 42 Neighborhood of CCNB2 www.broad.mit.e...
Broad MORF_REV3L View Gene Set 1.503e-08 52 1.493e-07 43 Neighborhood of REV3L www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 1.591e-08 138 1.544e-07 44 Neighborhood of MYST2 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 1.942e-08 55 1.802e-07 45 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 1.922e-08 85 1.802e-07 45 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 2.104e-08 52 1.911e-07 47 Neighborhood of MSH2 www.broad.mit.e...
Broad GNF2_FBL View Gene Set 2.356e-08 119 2.096e-07 48 Neighborhood of FBL www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 2.94e-08 76 2.562e-07 49 Neighborhood of EIF4E www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 4.986e-08 51 4.258e-07 50 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 5.187e-08 76 4.342e-07 51 Neighborhood of MBD4 www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 6.385e-08 50 5.243e-07 52 Neighborhood of MCM4 www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 8.239e-08 88 6.638e-07 53 Neighborhood of PPP6C www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 9.284e-08 56 7.341e-07 54 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_TTK View Gene Set 9.56e-08 34 7.422e-07 55 Neighborhood of TTK www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 1.069e-07 276 8.148e-07 56 Neighborhood of GNB1 www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 1.524e-07 52 1.142e-06 57 Neighborhood of CDC20 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 2.691e-07 65 1.981e-06 58 Neighborhood of CCNF www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 3.754e-07 79 2.717e-06 59 Neighborhood of UBE2N www.broad.mit.e...
Broad GCM_DFFA View Gene Set 4.331e-07 100 3.082e-06 60 Neighborhood of DFFA www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 6.381e-07 35 4.467e-06 61 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 8.075e-07 210 5.562e-06 62 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_UNG View Gene Set 8.269e-07 65 5.605e-06 63 Neighborhood of UNG www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 9.049e-07 220 6.038e-06 64 Neighborhood of EIF3S2 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 9.472e-07 46 6.223e-06 65 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 9.911e-07 173 6.412e-06 66 Neighborhood of PRKDC www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 1.012e-06 38 6.447e-06 67 Neighborhood of RFC3 www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 1.239e-06 32 7.78e-06 68 Neighborhood of ELAC2 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 1.414e-06 26 8.75e-06 69 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 1.668e-06 110 1.018e-05 70 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 1.798e-06 90 1.082e-05 71 Neighborhood of RRM1 www.broad.mit.e...
Broad GCM_MAX View Gene Set 3.517e-06 28 2.069e-05 72 Neighborhood of MAX www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 3.537e-06 30 2.069e-05 72 Neighborhood of MSH6 www.broad.mit.e...
Broad GCM_PTK2 View Gene Set 3.85e-06 126 2.221e-05 74 Neighborhood of PTK2 www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 3.954e-06 79 2.232e-05 75 Neighborhood of PRDX3 www.broad.mit.e...
Broad GCM_BAG5 View Gene Set 3.972e-06 26 2.232e-05 75 Neighborhood of BAG5 www.broad.mit.e...
Broad GNF2_EIF3S6 View Gene Set 4.365e-06 109 2.421e-05 77 Neighborhood of EIF3S6 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 6.288e-06 36 3.442e-05 78 Neighborhood of RRM2 www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 8.803e-06 178 4.758e-05 79 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 9.424e-06 48 4.908e-05 80 Neighborhood of BAG5 www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 9.208e-06 36 4.908e-05 80 Neighborhood of MLH1 www.broad.mit.e...
Broad GNF2_NS View Gene Set 9.409e-06 35 4.908e-05 80 Neighborhood of NS www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 1.115e-05 47 5.676e-05 83 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 1.117e-05 29 5.676e-05 83 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_EI24 View Gene Set 1.655e-05 136 8.315e-05 85 Neighborhood of EI24 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 1.679e-05 162 8.337e-05 86 Neighborhood of PSMC1 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 1.973e-05 196 9.683e-05 87 Neighborhood of RAC1 www.broad.mit.e...
Broad GNF2_TDG View Gene Set 2.021e-05 23 9.804e-05 88 Neighborhood of TDG www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 2.147e-05 37 0.000103 89 Neighborhood of CENPE www.broad.mit.e...
Broad MORF_PCNA View Gene Set 2.813e-05 71 0.0001335 90 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 2.954e-05 175 0.0001386 91 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 3.127e-05 30 0.0001451 92 Neighborhood of SMC2L1 www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 3.329e-05 58 0.0001529 93 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 4.072e-05 26 0.000185 94 Neighborhood of MKI67 www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 4.695e-05 105 0.000211 95 Neighborhood of DNMT1 www.broad.mit.e...
Broad GCM_DLG1 View Gene Set 4.795e-05 63 0.0002133 96 Neighborhood of DLG1 www.broad.mit.e...
Broad MORF_RAB5A View Gene Set 6.778e-05 83 0.0002984 97 Neighborhood of RAB5A www.broad.mit.e...
Broad GCM_DEAF1 View Gene Set 8.265e-05 23 0.0003601 98 Neighborhood of DEAF1 www.broad.mit.e...
Broad MORF_AATF View Gene Set 8.506e-05 179 0.0003632 99 Neighborhood of AATF www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 8.456e-05 28 0.0003632 99 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 8.613e-05 54 0.0003641 101 Neighborhood of DEAF1 www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 8.846e-05 25 0.0003703 102 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 0.0001088 94 0.000451 103 Neighborhood of RAD54L www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 0.0001162 20 0.0004773 104 Neighborhood of RPA1 www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 0.0001286 175 0.000523 105 Neighborhood of SKP1A www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 0.0001348 61 0.0005378 106 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 0.0001338 256 0.0005378 106 Neighborhood of CSNK2B www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 0.0001392 108 0.0005503 108 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 0.0001414 120 0.0005538 109 Neighborhood of CDC10 www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 0.0001615 36 0.0006271 110 Neighborhood of CKS1B www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 0.0001768 41 0.0006801 111 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 0.0001848 67 0.0006981 112 Neighborhood of CDC16 www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 0.0001847 62 0.0006981 112 Neighborhood of CUL1 www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 0.0002127 133 0.0007968 114 Neighborhood of PRKAR1A www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.0002148 131 0.0007976 115 Neighborhood of TPR www.broad.mit.e...
Broad GNF2_DDX5 View Gene Set 0.0002459 54 0.0009051 116 Neighborhood of DDX5 www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 0.0002818 76 0.001028 117 Neighborhood of PSME1 www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 0.0002872 108 0.00103 118 Neighborhood of EIF3S6 www.broad.mit.e...
Broad GNF2_ST13 View Gene Set 0.000287 56 0.00103 118 Neighborhood of ST13 www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 0.000291 119 0.001036 120 Neighborhood of AP3D1 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 0.0003618 145 0.001277 121 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_GMPS View Gene Set 0.0003835 48 0.001342 122 Neighborhood of GMPS www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 0.0003981 102 0.001382 123 Neighborhood of APEX1 www.broad.mit.e...
Broad GCM_CHUK View Gene Set 0.0004574 61 0.001575 124 Neighborhood of CHUK www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 0.0004971 33 0.001698 125 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_RAN View Gene Set 0.0005229 242 0.001772 126 Neighborhood of RAN www.broad.mit.e...
Broad GCM_SUFU View Gene Set 0.0005366 62 0.001804 127 Neighborhood of SUFU www.broad.mit.e...
Broad MORF_FBL View Gene Set 0.0005424 121 0.001809 128 Neighborhood of FBL www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 0.0005581 94 0.001847 129 Neighborhood of RAF1 www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 0.0005774 179 0.001897 130 Neighborhood of RAB1A www.broad.mit.e...
Broad MORF_RAP1A View Gene Set 0.0006155 122 0.002006 131 Neighborhood of RAP1A www.broad.mit.e...
Broad GCM_NCAM1 View Gene Set 0.0006274 111 0.002014 132 Neighborhood of NCAM1 www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 0.0006243 22 0.002014 132 Neighborhood of BUB3 www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 0.0007744 29 0.002468 134 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 0.0007848 49 0.002482 135 Neighborhood of BUB1 www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.0008247 24 0.002589 136 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_XPC View Gene Set 0.0008836 55 0.002754 137 Neighborhood of XPC www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 0.0008966 28 0.002774 138 Neighborhood of H2AFX www.broad.mit.e...
Broad GNF2_MBD4 View Gene Set 0.0009961 21 0.00306 139 Neighborhood of MBD4 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 0.001014 76 0.003092 140 Neighborhood of CCNI www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 0.001289 222 0.003905 141 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_SS18 View Gene Set 0.001354 55 0.004071 142 Neighborhood of SS18 www.broad.mit.e...
Broad MORF_ATRX View Gene Set 0.001604 185 0.004791 143 Neighborhood of ATRX www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 0.001622 47 0.004809 144 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_ATOX1 View Gene Set 0.001725 72 0.00508 145 Neighborhood of ATOX1 www.broad.mit.e...
Broad GCM_RAP2A View Gene Set 0.001906 30 0.005574 146 Neighborhood of RAP2A www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 0.003197 174 0.009224 147 Neighborhood of ANP32B www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 0.003178 113 0.009224 147 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 0.003293 202 0.009438 149 Neighborhood of PRKAG1 www.broad.mit.e...
Broad GCM_MLL View Gene Set 0.003688 130 0.0105 150 Neighborhood of MLL www.broad.mit.e...
Broad GCM_FANCL View Gene Set 0.003857 19 0.01091 151 Neighborhood of FANCL www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 0.003986 68 0.0112 152 Neighborhood of BMPR2 www.broad.mit.e...
Broad GCM_GSPT1 View Gene Set 0.004054 129 0.01131 153 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 0.004443 149 0.01232 154 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 0.004746 98 0.01308 155 Neighborhood of PAPSS1 www.broad.mit.e...
Broad GCM_CSNK1D View Gene Set 0.005232 24 0.01432 156 Neighborhood of CSNK1D www.broad.mit.e...
Broad GCM_TPR View Gene Set 0.005473 29 0.01489 157 Neighborhood of TPR www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.005528 99 0.01494 158 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 0.006332 220 0.01701 159 Neighborhood of DDB1 www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 0.006994 208 0.01866 160 Neighborhood of UBE2I www.broad.mit.e...
Broad GCM_RAN View Gene Set 0.007115 160 0.01887 161 Neighborhood of RAN www.broad.mit.e...
Broad GCM_CBFB View Gene Set 0.007347 59 0.01937 162 Neighborhood of CBFB www.broad.mit.e...
Broad GCM_NF2 View Gene Set 0.008703 235 0.0228 163 Neighborhood of NF2 www.broad.mit.e...
Broad GCM_MAP1B View Gene Set 0.009037 55 0.02353 164 Neighborhood of MAP1B www.broad.mit.e...
Broad MORF_PPP5C View Gene Set 0.009543 81 0.0247 165 Neighborhood of PPP5C www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.01058 44 0.0272 166 Neighborhood of UBE2A www.broad.mit.e...
Broad GNF2_BNIP2 View Gene Set 0.01084 31 0.02772 167 Neighborhood of BNIP2 www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 0.01103 123 0.02803 168 Neighborhood of MAP2K2 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 0.01154 58 0.02917 169 Neighborhood of ESPL1 www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 0.01698 144 0.04264 170 Neighborhood of MAP4K4 www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 0.0171 93 0.04269 171 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 0.0189 95 0.04692 172 Neighborhood of MTA1 www.broad.mit.e...
Broad MORF_ERH View Gene Set 0.0196 103 0.0481 173 Neighborhood of ERH www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 0.0195 145 0.0481 173 Neighborhood of PPP1CA www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_8 View Gene Set 4.104e-24 403 1.863e-21 1 Genes in module_8 www.broad.mit.e...
Broad module_98 View Gene Set 5.105e-17 375 1.159e-14 2 Genes in module_98 www.broad.mit.e...
Broad module_252 View Gene Set 4.837e-14 224 7.32e-12 3 Genes in module_252 www.broad.mit.e...
Broad module_3 View Gene Set 9.42e-14 374 1.069e-11 4 Genes in module_3 www.broad.mit.e...
Broad module_54 View Gene Set 1.435e-13 242 1.303e-11 5 Genes in module_54 www.broad.mit.e...
Broad module_198 View Gene Set 4.18e-13 288 3.163e-11 6 Genes in module_198 www.broad.mit.e...
Broad module_17 View Gene Set 9.246e-09 351 5.997e-07 7 Genes in module_17 www.broad.mit.e...
Broad module_36 View Gene Set 2.216e-08 146 1.257e-06 8 Genes in module_36 www.broad.mit.e...
Broad module_32 View Gene Set 1.129e-07 227 5.694e-06 9 Genes in module_32 www.broad.mit.e...
Broad module_183 View Gene Set 1.908e-07 52 8.663e-06 10 Genes in module_183 www.broad.mit.e...
Broad module_83 View Gene Set 9.525e-07 296 3.931e-05 11 Genes in module_83 www.broad.mit.e...
Broad module_105 View Gene Set 1.098e-06 192 4.155e-05 12 Genes in module_105 www.broad.mit.e...
Broad module_91 View Gene Set 2.034e-06 37 7.103e-05 13 Genes in module_91 www.broad.mit.e...
Broad module_124 View Gene Set 2.497e-06 92 8.097e-05 14 Genes in module_124 www.broad.mit.e...
Broad module_332 View Gene Set 2.918e-06 35 8.831e-05 15 Genes in module_332 www.broad.mit.e...
Broad module_28 View Gene Set 6.629e-06 32 0.0001881 16 Genes in module_28 www.broad.mit.e...
Broad module_72 View Gene Set 7.293e-06 293 0.0001921 17 Genes in module_72 www.broad.mit.e...
Broad module_278 View Gene Set 7.616e-06 34 0.0001921 17 Genes in module_278 www.broad.mit.e...
Broad module_315 View Gene Set 8.059e-06 15 0.0001926 19 Genes in module_315 www.broad.mit.e...
Broad module_114 View Gene Set 1.111e-05 314 0.0002403 20 Genes in module_114 www.broad.mit.e...
Broad module_197 View Gene Set 1.102e-05 170 0.0002403 20 Genes in module_197 www.broad.mit.e...
Broad module_52 View Gene Set 1.421e-05 415 0.0002933 22 Genes in module_52 www.broad.mit.e...
Broad module_151 View Gene Set 1.826e-05 297 0.0003605 23 Genes in module_151 www.broad.mit.e...
Broad module_244 View Gene Set 2.103e-05 182 0.0003978 24 Genes in module_244 www.broad.mit.e...
Broad module_403 View Gene Set 4.896e-05 44 0.0008891 25 Genes in module_403 www.broad.mit.e...
Broad module_158 View Gene Set 8.275e-05 41 0.001445 26 Genes in module_158 www.broad.mit.e...
Broad module_323 View Gene Set 0.0001129 54 0.001899 27 Genes in module_323 www.broad.mit.e...
Broad module_50 View Gene Set 0.0001712 13 0.002726 28 Genes in module_50 www.broad.mit.e...
Broad module_125 View Gene Set 0.0001741 42 0.002726 28 Genes in module_125 www.broad.mit.e...
Broad module_277 View Gene Set 0.000227 48 0.003436 30 Genes in module_277 www.broad.mit.e...
Broad module_352 View Gene Set 0.0003941 17 0.005771 31 Genes in module_352 www.broad.mit.e...
Broad module_273 View Gene Set 0.0005344 50 0.007582 32 Genes in module_273 www.broad.mit.e...
Broad module_451 View Gene Set 0.0006293 29 0.008657 33 Genes in module_451 www.broad.mit.e...
Broad module_18 View Gene Set 0.0007475 434 0.009981 34 Genes in module_18 www.broad.mit.e...
Broad module_388 View Gene Set 0.0009872 17 0.01281 35 Genes in module_388 www.broad.mit.e...
Broad module_57 View Gene Set 0.001453 54 0.01822 36 Genes in module_57 www.broad.mit.e...
Broad module_237 View Gene Set 0.001525 50 0.01822 36 Genes in module_237 www.broad.mit.e...
Broad module_337 View Gene Set 0.001512 59 0.01822 36 Genes in module_337 www.broad.mit.e...
Broad module_421 View Gene Set 0.001668 23 0.01942 39 Genes in module_421 www.broad.mit.e...
Broad module_62 View Gene Set 0.001804 88 0.02047 40 Genes in module_62 www.broad.mit.e...
Broad module_82 View Gene Set 0.002474 24 0.02674 41 Genes in module_82 www.broad.mit.e...
Broad module_189 View Gene Set 0.002448 23 0.02674 41 Genes in module_189 www.broad.mit.e...
Broad module_22 View Gene Set 0.00255 45 0.02693 43 Genes in module_22 www.broad.mit.e...
Broad module_538 View Gene Set 0.002702 8 0.02788 44 Genes in module_538 www.broad.mit.e...
Broad module_219 View Gene Set 0.002967 26 0.02994 45 Genes in module_219 www.broad.mit.e...
Broad module_450 View Gene Set 0.004161 9 0.04106 46 Genes in module_450 www.broad.mit.e...
Broad module_25 View Gene Set 0.00466 13 0.04281 47 Genes in module_25 www.broad.mit.e...
Broad module_42 View Gene Set 0.004519 25 0.04281 47 Genes in module_42 www.broad.mit.e...
Broad module_140 View Gene Set 0.00458 8 0.04281 47 Genes in module_140 www.broad.mit.e...
Broad module_206 View Gene Set 0.004714 139 0.04281 47 Genes in module_206 www.broad.mit.e...
Broad module_239 View Gene Set 0.005396 112 0.04711 51 Genes in module_239 www.broad.mit.e...
Broad module_447 View Gene Set 0.005352 35 0.04711 51 Genes in module_447 www.broad.mit.e...
Broad module_491 View Gene Set 0.005618 74 0.04812 53 Genes in module_491 www.broad.mit.e...
Broad module_303 View Gene Set 0.005884 27 0.04857 54 Genes in module_303 www.broad.mit.e...
Broad module_376 View Gene Set 0.005852 7 0.04857 54 Genes in module_376 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 6.285e-17 1197 5.185e-14 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 1.713e-12 1623 7.067e-10 2 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 4.402e-12 147 1.21e-09 3 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 9.558e-12 801 1.971e-09 4 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 1.877e-09 253 3.098e-07 5 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 3.266e-08 304 4.491e-06 6 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 8.529e-08 187 1.005e-05 7 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 1.892e-07 74 1.951e-05 8 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 5.245e-07 197 4.758e-05 9 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 5.767e-07 73 4.758e-05 9 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY View Gene Set 2.491e-06 59 0.0001868 11 Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 3.81e-06 167 0.000262 12 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 4.711e-06 159 0.0002989 13 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 5.707e-06 123 0.0003363 14 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 8.65e-06 148 0.0004757 15 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad TRANSCRIPTION_INITIATION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 1.542e-05 29 0.0007953 16 Genes annotated by the GO term GO:0006367. Processes involved in starting transcription from the RNA polymerase II promoter. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 1.865e-05 101 0.0009049 17 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 2.307e-05 625 0.001057 18 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 2.56e-05 623 0.001112 19 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad M_PHASE View Gene Set 2.738e-05 111 0.001129 20 Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division. www.broad.mit.e...
Broad TRANSCRIPTION_INITIATION View Gene Set 3.866e-05 35 0.001519 21 Genes annotated by the GO term GO:0006352. Processes involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template resulting in the subsequent synthesis of RNA from that promoter. www.broad.mit.e...
Broad CELLULAR_PROTEIN_CATABOLIC_PROCESS View Gene Set 4.067e-05 58 0.001525 22 Genes annotated by the GO term GO:0044257. The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. www.broad.mit.e...
Broad PROTEIN_DNA_COMPLEX_ASSEMBLY View Gene Set 4.257e-05 48 0.001527 23 Genes annotated by the GO term GO:0065004. The aggregation arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 6.803e-05 767 0.002198 24 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397 View Gene Set 6.929e-05 59 0.002198 24 Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS View Gene Set 6.418e-05 70 0.002198 24 Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 8.235e-05 449 0.002516 27 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad COENZYME_BIOSYNTHETIC_PROCESS View Gene Set 9.181e-05 10 0.002705 28 Genes annotated by the GO term GO:0009108. The chemical reactions and pathways resulting in the formation of coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed. www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075 View Gene Set 0.0001094 47 0.003009 29 Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 0.0001086 779 0.003009 29 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad PROTEIN_FOLDING View Gene Set 0.0001171 56 0.003116 31 Genes annotated by the GO term GO:0006457. The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION View Gene Set 0.0001223 55 0.003153 32 Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.0001289 457 0.003222 33 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.0001356 452 0.003291 34 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad BIOPOLYMER_CATABOLIC_PROCESS View Gene Set 0.0001511 115 0.003561 35 Genes annotated by the GO term GO:0043285. The chemical reactions and pathways resulting in the breakdown of biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.0002269 285 0.005026 36 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad REGULATION_OF_CELL_CYCLE View Gene Set 0.0002231 176 0.005026 36 Genes annotated by the GO term GO:0051726. Any process that modulates the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 0.0002315 83 0.005026 36 Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 0.0002954 738 0.006248 39 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad INTRACELLULAR_TRANSPORT View Gene Set 0.0003731 271 0.007239 40 Genes annotated by the GO term GO:0046907. The directed movement of substances within a cell. www.broad.mit.e...
Broad CELLULAR_BIOSYNTHETIC_PROCESS View Gene Set 0.0003773 311 0.007239 40 Genes annotated by the GO term GO:0044249. The chemical reactions and pathways resulting in the formation of substances carried out by individual cells. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 0.0003546 660 0.007239 40 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad MITOSIS View Gene Set 0.0003716 81 0.007239 40 Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0003987 601 0.007475 44 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad PROTEIN_CATABOLIC_PROCESS View Gene Set 0.0004558 68 0.008357 45 Genes annotated by the GO term GO:0030163. The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native active configuration with or without the hydrolysis of peptide bonds. www.broad.mit.e...
Broad MACROMOLECULE_CATABOLIC_PROCESS View Gene Set 0.0005356 135 0.009607 46 Genes annotated by the GO term GO:0009057. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_CATABOLIC_PROCESS View Gene Set 0.0007819 103 0.01373 47 Genes annotated by the GO term GO:0044265. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 0.00104 271 0.01751 48 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS View Gene Set 0.001034 27 0.01751 48 Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions. www.broad.mit.e...
Broad TRANSLATIONAL_INITIATION View Gene Set 0.001126 39 0.01825 50 Genes annotated by the GO term GO:0006413. The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome mRNA and an initiation complex that contains the first aminoacyl-tRNA. www.broad.mit.e...
Broad COFACTOR_BIOSYNTHETIC_PROCESS View Gene Set 0.001128 21 0.01825 50 Genes annotated by the GO term GO:0051188. The chemical reactions and pathways resulting in the formation of a cofactor a substance that is required for the activity of an enzyme or other protein. www.broad.mit.e...
Broad NUCLEOTIDE_METABOLIC_PROCESS View Gene Set 0.001254 40 0.0199 52 Genes annotated by the GO term GO:0009117. The chemical reactions and pathways involving a nucleotide a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono- di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). www.broad.mit.e...
Broad SPLICEOSOME_ASSEMBLY View Gene Set 0.001398 13 0.02176 53 Genes annotated by the GO term GO:0000245. The aggregation arrangement and bonding together of the spliceosome a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. www.broad.mit.e...
Broad TRANSLATION View Gene Set 0.001571 177 0.02401 54 Genes annotated by the GO term GO:0006412. The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. www.broad.mit.e...
Broad ANDROGEN_RECEPTOR_SIGNALING_PATHWAY View Gene Set 0.001756 12 0.02586 55 Genes annotated by the GO term GO:0030521. Any series of molecular signals generated as a consequence of an androgen binding to its receptor. www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.001748 10 0.02586 55 Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad ESTABLISHMENT_OF_CELLULAR_LOCALIZATION View Gene Set 0.00179 342 0.02591 57 Genes annotated by the GO term GO:0051649. The directed movement of a substance or cellular entity such as a protein complex or organelle to a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad BIOSYNTHETIC_PROCESS View Gene Set 0.002054 459 0.02922 58 Genes annotated by the GO term GO:0009058. The energy-requiring part of metabolism in which simpler substances are transformed into more complex ones as in growth and other biosynthetic processes. www.broad.mit.e...
Broad MEIOTIC_CELL_CYCLE View Gene Set 0.002126 34 0.02954 59 Genes annotated by the GO term GO:0051321. Progression through the phases of the meiotic cell cycle in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 0.002149 555 0.02954 59 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS View Gene Set 0.002233 1085 0.0302 61 Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification. www.broad.mit.e...
Broad CELLULAR_LOCALIZATION View Gene Set 0.00275 360 0.0366 62 Genes annotated by the GO term GO:0051641. The processes by which a substance or cellular entity such as a protein complex or organelle is transported to and/or maintained in a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad RRNA_PROCESSING View Gene Set 0.002901 11 0.0374 63 Genes annotated by the GO term GO:0006364. Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.002878 9 0.0374 63 Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle. www.broad.mit.e...
Broad TRNA_METABOLIC_PROCESS View Gene Set 0.003023 18 0.03837 65 Genes annotated by the GO term GO:0006399. The chemical reactions and pathways involving tRNA transfer RNA a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases the function of which has not been completely established. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.003096 629 0.0387 66 Genes annotated by the GO term GO:0048523. Any process that stops prevents or reduces the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS View Gene Set 0.003213 53 0.03957 67 Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_PROGRAMMED_CELL_DEATH View Gene Set 0.003306 148 0.04011 68 Genes annotated by the GO term GO:0043069. Any process that stops prevents or reduces the frequency rate or extent of programmed cell death cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 0.003466 288 0.04144 69 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad RESPONSE_TO_HORMONE_STIMULUS View Gene Set 0.003571 33 0.04149 70 Genes annotated by the GO term GO:0009725. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a hormone stimulus. www.broad.mit.e...
Broad G1_S_TRANSITION_OF_MITOTIC_CELL_CYCLE View Gene Set 0.003528 27 0.04149 70 Genes annotated by the GO term GO:0000082. Progression from G1 phase to S phase of the mitotic cell cycle. www.broad.mit.e...
Broad CHROMATIN_ASSEMBLY View Gene Set 0.003704 16 0.04244 72 Genes annotated by the GO term GO:0031497. The assembly of DNA histone proteins and other associated proteins into chromatin structure beginning with the formation of the basic unit the nucleosome followed by organization of the nucleosomes into higher order structures ultimately giving rise to a complex organization of specific domains within the nucleus. www.broad.mit.e...
Broad RNA_EXPORT_FROM_NUCLEUS View Gene Set 0.003994 20 0.04513 73 Genes annotated by the GO term GO:0006405. The directed movement of RNA from the nucleus to the cytoplasm. www.broad.mit.e...
Broad PROTEIN_MODIFICATION_BY_SMALL_PROTEIN_CONJUGATION View Gene Set 0.004124 43 0.04597 74 Genes annotated by the GO term GO:0032446. A process by which one or more moieties of a small protein such as ubiquitin or a ubiquitin-like protein are covalently attached to a target protein. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_APOPTOSIS View Gene Set 0.004342 147 0.04759 75 Genes annotated by the GO term GO:0043066. Any process that stops prevents or reduces the frequency rate or extent of cell death by apoptosis. www.broad.mit.e...
Broad PROGRAMMED_CELL_DEATH View Gene Set 0.004384 424 0.04759 75 Genes annotated by the GO term GO:0012501. Cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 2.409e-26 1353 5.612e-24 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 2.672e-22 1144 3.113e-20 2 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad ORGANELLE_PART View Gene Set 5.187e-22 1149 4.028e-20 3 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 2.143e-21 543 1.248e-19 4 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 1.786e-15 434 6.935e-14 5 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 1.786e-15 434 6.935e-14 5 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 1.699e-13 365 5.656e-12 7 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 1.748e-11 266 5.091e-10 8 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 2.297e-10 914 5.946e-09 9 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 1.264e-09 202 2.945e-08 10 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 2.243e-09 335 4.75e-08 11 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 3.109e-09 122 6.036e-08 12 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 3.432e-09 2054 6.152e-08 13 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 1.036e-08 129 1.725e-07 14 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASEII_HOLOENZYME View Gene Set 4.353e-08 65 6.761e-07 15 Genes annotated by the GO term GO:0016591. Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA D E F and H which are required for promoter recognition and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA. www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION View Gene Set 1.109e-07 31 1.615e-06 16 Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 3.309e-07 95 4.535e-06 17 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 5.434e-07 1350 7.035e-06 18 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 9.51e-07 44 1.166e-05 19 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad SPINDLE View Gene Set 1.915e-06 37 2.231e-05 20 Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 2.338e-06 799 2.594e-05 21 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad ENVELOPE View Gene Set 6.565e-06 165 6.651e-05 22 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 6.565e-06 165 6.651e-05 22 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 9.826e-06 290 9.539e-05 24 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad UBIQUITIN_LIGASE_COMPLEX View Gene Set 1.135e-05 26 0.0001058 25 Genes annotated by the GO term GO:0000151. A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex. www.broad.mit.e...
Broad KINETOCHORE View Gene Set 1.349e-05 25 0.0001209 26 Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 4.132e-05 116 0.0003566 27 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad NUCLEAR_PORE View Gene Set 5.177e-05 29 0.0004308 28 Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined. www.broad.mit.e...
Broad SPINDLE_MICROTUBULE View Gene Set 5.502e-05 15 0.0004421 29 Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 7.407e-05 71 0.0005753 30 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART View Gene Set 0.0001011 40 0.0007599 31 Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 0.0001057 48 0.0007697 32 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 0.0001288 613 0.0008827 33 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 0.0001288 613 0.0008827 33 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad PROTEASOME_COMPLEX View Gene Set 0.0001715 23 0.001142 35 Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 0.000188 140 0.001217 36 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_COMPLEX View Gene Set 0.0001986 84 0.001251 37 Genes annotated by the GO term GO:0005667. Any complex distinct from RNA polymerase including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences and regulating transcription. www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.0002872 20 0.001761 38 Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs. www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER View Gene Set 0.0003401 64 0.002032 39 Genes annotated by the GO term GO:0005815. A region in a eukaryotic cell such as a centrosome or basal body from which microtubules grow. www.broad.mit.e...
Broad PORE_COMPLEX View Gene Set 0.0003516 34 0.002048 40 Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids. www.broad.mit.e...
Broad NUCLEAR_UBIQUITIN_LIGASE_COMPLEX View Gene Set 0.0004065 11 0.002255 41 Genes annotated by the GO term GO:0000152. A ubiquitin ligase complex found in the nucleus. www.broad.mit.e...
Broad CENTROSOME View Gene Set 0.0004013 55 0.002255 41 Genes annotated by the GO term GO:0005813. A structure comprised of a core structure (in most organisms a pair of centrioles) and peripheral material from which a microtubule-based structure such as a spindle apparatus is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells though in animal cells it changes continually during the cell-division cycle. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 0.0004691 213 0.002542 43 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.0006491 16 0.003288 44 Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX View Gene Set 0.0006491 16 0.003288 44 Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.0006491 16 0.003288 44 Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad PERINUCLEAR_REGION_OF_CYTOPLASM View Gene Set 0.0006843 55 0.003392 47 Genes annotated by the GO term GO:0048471. Cytoplasm situated near or occurring around the nucleus. www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE View Gene Set 0.001065 74 0.00517 48 Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 0.001559 146 0.007411 49 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad MEDIATOR_COMPLEX View Gene Set 0.001788 18 0.008333 50 Genes annotated by the GO term GO:0000119. A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription. www.broad.mit.e...
Broad NUCLEOLAR_PART View Gene Set 0.002256 16 0.01031 51 Genes annotated by the GO term GO:0044452. Any constituent part of a nucleolus a small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. www.broad.mit.e...
Broad MITOCHONDRIAL_MATRIX View Gene Set 0.002397 46 0.01054 52 Genes annotated by the GO term GO:0005759. The gel-like material with considerable fine structure that lies in the matrix space or lumen of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and in some organisms the enzymes concerned with fatty-acid oxidation. www.broad.mit.e...
Broad MITOCHONDRIAL_LUMEN View Gene Set 0.002397 46 0.01054 52 Genes annotated by the GO term GO:0031980. The volume enclosed by the mitochondrial inner membrane. www.broad.mit.e...
Broad REPLICATION_FORK View Gene Set 0.002881 18 0.01243 54 Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER_PART View Gene Set 0.003598 19 0.01524 55 Genes annotated by the GO term GO:0044450. Any constituent part of a microtubule organizing center a region in a eukaryotic cell such as a centrosome or basal body from which microtubules grow. www.broad.mit.e...
Broad MITOCHONDRIAL_INNER_MEMBRANE View Gene Set 0.00529 66 0.02201 56 Genes annotated by the GO term GO:0005743. The inner i.e. lumen-facing lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. www.broad.mit.e...
Broad MICROBODY View Gene Set 0.005911 46 0.02375 57 Genes annotated by the GO term GO:0042579. Cytoplasmic organelles spherical or oval in shape that are bounded by a single membrane and contain oxidative enzymes especially those utilizing hydrogen peroxide (H2O2). www.broad.mit.e...
Broad PEROXISOME View Gene Set 0.005911 46 0.02375 57 Genes annotated by the GO term GO:0005777. A small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2). www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 0.006857 32 0.02663 59 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE_PART View Gene Set 0.006809 52 0.02663 59 Genes annotated by the GO term GO:0044455. Any constituent part of the mitochondrial membrane either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE View Gene Set 0.007604 85 0.02858 61 Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 0.007573 95 0.02858 61 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad CHROMATIN View Gene Set 0.008364 35 0.03093 63 Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome. www.broad.mit.e...
Broad NUCLEAR_BODY View Gene Set 0.009165 31 0.03337 64 Genes annotated by the GO term GO:0016604. Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. www.broad.mit.e...
Broad SPINDLE_POLE View Gene Set 0.01083 17 0.03883 65 Genes annotated by the GO term GO:0000922. Either of the ends of a spindle where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules spindle microtubules and astral microtubules. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 0.01421 53 0.04935 66 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad PEROXISOMAL_PART View Gene Set 0.0144 13 0.04935 66 Genes annotated by the GO term GO:0044439. Any constituent part of a peroxisome a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2). www.broad.mit.e...
Broad MICROBODY_PART View Gene Set 0.0144 13 0.04935 66 Genes annotated by the GO term GO:0044438. Any constituent part of a microbody a cytoplasmic organelle spherical or oval in shape that is bounded by a single membrane and contains oxidative enzymes especially those utilizing hydrogen peroxide (H2O2). www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASEII_CORE_COMPLEX View Gene Set 0.01471 11 0.04969 69 Genes annotated by the GO term GO:0005665. RNA polymerase II one of three nuclear DNA-directed RNA polymerases found in all eukaryotes is a multisubunit complex; typically it produces mRNAs snoRNAs and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more) some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis it requires additional factors to select the appropriate template. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_BINDING View Gene Set 4.24e-08 236 1.679e-05 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad LIGASE_ACTIVITY View Gene Set 1.378e-06 97 0.0002728 2 Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS View Gene Set 0.0001592 68 0.02101 3 Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING View Gene Set 0.0002781 300 0.02753 4 Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription. www.broad.mit.e...
Broad GENERAL_RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_ACTIVITY View Gene Set 0.0004202 32 0.03328 5 Genes annotated by the GO term GO:0016251. Any function that supports basal (unregulated) transcription of genes by core RNA polymerase II. Five general transcription factors are necessary and sufficient for such basal transcription in yeast: TFIIB TFIID TFIIE TFIIF TFIIH and TATA-binding protein (TBF). www.broad.mit.e...
Broad CHAPERONE_BINDING View Gene Set 0.0007025 12 0.03974 6 Genes annotated by the GO term GO:0051087. Interacting selectively with a chaperone protein a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. www.broad.mit.e...
Broad UNFOLDED_PROTEIN_BINDING View Gene Set 0.0006521 41 0.03974 6 Genes annotated by the GO term GO:0051082. Interacting selectively with an unfolded protein. www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING View Gene Set 0.001062 32 0.04672 8 Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA. www.broad.mit.e...
Broad SMALL_CONJUGATING_PROTEIN_LIGASE_ACTIVITY View Gene Set 0.0009532 51 0.04672 8 Genes annotated by the GO term GO:0019787. Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein and a substrate lysine residue. www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY View Gene Set 0.001225 222 0.0485 10 Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 3.128e-18 421 7.841e-15 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 10810093 View Gene Set 1.977e-16 151 2.478e-13 2 Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 1.829e-12 773 1.146e-09 3 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 1.781e-12 391 1.146e-09 3 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 11042152 View Gene Set 3.074e-12 315 1.524e-09 5 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 3.648e-12 208 1.524e-09 5 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 4.335e-12 210 1.553e-09 7 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 2.594e-11 504 8.128e-09 8 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 11285280 View Gene Set 3.369e-10 62 9.383e-08 9 Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 8.817e-10 106 2.21e-07 10 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 15029244 View Gene Set 5.185e-09 57 1.182e-06 11 Mammalian Cdh1/Fzr mediates its own degradation. www.ncbi.nlm.ni...
PMID 9121429 View Gene Set 7.538e-08 39 1.575e-05 12 The human immunodeficiency virus transactivator Tat interacts with the RNA polymerase II holoenzyme. www.ncbi.nlm.ni...
PMID 15057823 View Gene Set 1.51e-07 166 2.912e-05 13 The DNA sequence and analysis of human chromosome 13. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 2.637e-07 34 4.723e-05 14 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 12791267 View Gene Set 8.057e-07 50 0.0001191 15 Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase. www.ncbi.nlm.ni...
PMID 14564014 View Gene Set 7.66e-07 47 0.0001191 15 Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 8.075e-07 242 0.0001191 15 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 10893419 View Gene Set 1.013e-06 41 0.0001209 18 Degradation of HIV-1 integrase by the N-end rule pathway. www.ncbi.nlm.ni...
PMID 12419264 View Gene Set 1.013e-06 41 0.0001209 18 The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing. www.ncbi.nlm.ni...
PMID 14550573 View Gene Set 1.013e-06 41 0.0001209 18 Human immunodeficiency virus-1 Tat protein interacts with distinct proteasomal alpha and beta subunits. www.ncbi.nlm.ni...
PMID 9079628 View Gene Set 1.013e-06 41 0.0001209 18 HIV-1 tat inhibits the 20 S proteasome and its 11 S regulator-mediated activation. www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 1.094e-06 212 0.0001246 22 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 10931946 View Gene Set 1.248e-06 118 0.000136 23 Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. www.ncbi.nlm.ni...
PMID 20522537 View Gene Set 1.745e-06 73 0.0001823 24 Variation within DNA repair pathway genes and risk of multiple sclerosis. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 2.25e-06 748 0.0002169 25 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 2.224e-06 37 0.0002169 25 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 2.778e-06 182 0.0002363 27 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 12719574 View Gene Set 3.393e-06 42 0.0002363 27 Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions. www.ncbi.nlm.ni...
PMID 12750511 View Gene Set 3.393e-06 42 0.0002363 27 Hypermutation of HIV-1 DNA in the absence of the Vif protein. www.ncbi.nlm.ni...
PMID 12830140 View Gene Set 3.393e-06 42 0.0002363 27 DNA deamination: not just a trigger for antibody diversification but also a mechanism for defense against retroviruses. www.ncbi.nlm.ni...
PMID 12840737 View Gene Set 3.393e-06 42 0.0002363 27 Good to CU. www.ncbi.nlm.ni...
PMID 12914693 View Gene Set 3.393e-06 42 0.0002363 27 Death by deamination: a novel host restriction system for HIV-1. www.ncbi.nlm.ni...
PMID 12920286 View Gene Set 3.393e-06 42 0.0002363 27 Virology. Weapons of mutational destruction. www.ncbi.nlm.ni...
PMID 14614829 View Gene Set 3.393e-06 42 0.0002363 27 The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G. www.ncbi.nlm.ni...
PMID 9811770 View Gene Set 3.393e-06 42 0.0002363 27 An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein. www.ncbi.nlm.ni...
PMID 9846577 View Gene Set 3.393e-06 42 0.0002363 27 Evidence for a newly discovered cellular anti-HIV-1 phenotype. www.ncbi.nlm.ni...
PMID 12167863 View Gene Set 5.451e-06 43 0.0002733 37 Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. www.ncbi.nlm.ni...
PMID 12808465 View Gene Set 5.451e-06 43 0.0002733 37 The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. www.ncbi.nlm.ni...
PMID 12808466 View Gene Set 5.451e-06 43 0.0002733 37 Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. www.ncbi.nlm.ni...
PMID 12809610 View Gene Set 5.451e-06 43 0.0002733 37 DNA deamination mediates innate immunity to retroviral infection. www.ncbi.nlm.ni...
PMID 12859895 View Gene Set 4.614e-06 47 0.0002733 37 Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. www.ncbi.nlm.ni...
PMID 12970355 View Gene Set 5.451e-06 43 0.0002733 37 The enzymatic activity of CEM15/Apobec-3G is essential for the regulation of the infectivity of HIV-1 virion but not a sole determinant of its antiviral activity. www.ncbi.nlm.ni...
PMID 14527406 View Gene Set 5.451e-06 43 0.0002733 37 HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. www.ncbi.nlm.ni...
PMID 14528300 View Gene Set 5.451e-06 43 0.0002733 37 The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. www.ncbi.nlm.ni...
PMID 14528301 View Gene Set 5.451e-06 43 0.0002733 37 HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation. www.ncbi.nlm.ni...
PMID 14557625 View Gene Set 5.451e-06 43 0.0002733 37 The human immunodeficiency virus type 1 Vif protein reduces intracellular expression and inhibits packaging of APOBEC3G (CEM15) a cellular inhibitor of virus infectivity. www.ncbi.nlm.ni...
PMID 1939271 View Gene Set 5.409e-06 39 0.0002733 37 Abortive initiation is increased only for the weakest members of a set of down mutants of the adenovirus 2 major late promoter. www.ncbi.nlm.ni...
PMID 2449431 View Gene Set 5.409e-06 39 0.0002733 37 ATP activates transcription initiation from promoters by RNA polymerase II in a reversible step prior to RNA synthesis. www.ncbi.nlm.ni...
PMID 8946909 View Gene Set 5.409e-06 39 0.0002733 37 The general transcription factors of RNA polymerase II. www.ncbi.nlm.ni...
PMID 9405375 View Gene Set 5.409e-06 39 0.0002733 37 Three transitions in the RNA polymerase II transcription complex during initiation. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 7.67e-06 23 0.000377 51 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 8811196 View Gene Set 8.386e-06 37 0.0004043 52 Structure and functions of the 20S and 26S proteasomes. www.ncbi.nlm.ni...
PMID 11742988 View Gene Set 1.005e-05 20 0.0004577 53 APC/C-mediated destruction of the centrosomal kinase Nek2A occurs in early mitosis and depends upon a cyclin A-type D-box. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 1.022e-05 74 0.0004577 53 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 15175163 View Gene Set 9.849e-06 47 0.0004577 53 A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. www.ncbi.nlm.ni...
PMID 18950845 View Gene Set 1.004e-05 88 0.0004577 53 Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. www.ncbi.nlm.ni...
PMID 20056645 View Gene Set 1.31e-05 32 0.000576 57 Association of mitotic regulation pathway polymorphisms with pancreatic cancer risk and outcome. www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 1.373e-05 522 0.0005935 58 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 12614612 View Gene Set 1.576e-05 19 0.0006697 59 Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. www.ncbi.nlm.ni...
PMID 9159119 View Gene Set 1.684e-05 12 0.0007036 60 BRCA1 is a component of the RNA polymerase II holoenzyme. www.ncbi.nlm.ni...
PMID 11113176 View Gene Set 2.003e-05 11 0.000823 61 Studies of nematode TFIIE function reveal a link between Ser-5 phosphorylation of RNA polymerase II and the transition from transcription initiation to elongation. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 2.059e-05 58 0.0008276 62 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 9054383 View Gene Set 2.08e-05 38 0.0008276 62 Association of Tat with purified HIV-1 and HIV-2 transcription preinitiation complexes. www.ncbi.nlm.ni...
PMID 11535616 View Gene Set 2.341e-05 18 0.0009028 64 Checkpoint inhibition of the APC/C in HeLa cells is mediated by a complex of BUBR1 BUB3 CDC20 and MAD2. www.ncbi.nlm.ni...
PMID 14593737 View Gene Set 2.341e-05 18 0.0009028 64 The mitotic checkpoint: a signaling pathway that allows a single unattached kinetochore to inhibit mitotic exit. www.ncbi.nlm.ni...
PMID 10601273 View Gene Set 2.716e-05 21 0.001032 66 Nuclear import of hepatic glucokinase depends upon glucokinase regulatory protein whereas export is due to a nuclear export signal sequence in glucokinase. www.ncbi.nlm.ni...
PMID 11076961 View Gene Set 2.981e-05 14 0.001116 67 Characterization of vertebrate cohesin complexes and their regulation in prophase. www.ncbi.nlm.ni...
PMID 12228227 View Gene Set 3.784e-05 30 0.001375 68 Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1. www.ncbi.nlm.ni...
PMID 18997788 View Gene Set 3.742e-05 10 0.001375 68 The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction. www.ncbi.nlm.ni...
PMID 8849451 View Gene Set 4.088e-05 46 0.001464 70 Tat-SF1: cofactor for stimulation of transcriptional elongation by HIV-1 Tat. www.ncbi.nlm.ni...
PMID 15146057 View Gene Set 4.557e-05 10 0.001609 71 The entire Nup107-160 complex including three new members is targeted as one entity to kinetochores in mitosis. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 4.837e-05 102 0.001684 72 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 12584197 View Gene Set 5.015e-05 22 0.001722 73 Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5 Srb6 Med11 and Rox3. www.ncbi.nlm.ni...
PMID 12391170 View Gene Set 6.016e-05 18 0.002038 74 Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. www.ncbi.nlm.ni...
PMID 19536092 View Gene Set 6.589e-05 55 0.002202 75 Explorative study to identify novel candidate genes related to oxaliplatin efficacy and toxicity using a DNA repair array. www.ncbi.nlm.ni...
PMID 11095689 View Gene Set 7.427e-05 17 0.00245 76 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. www.ncbi.nlm.ni...
PMID 15226314 View Gene Set 7.866e-05 20 0.002561 77 Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. www.ncbi.nlm.ni...
PMID 12838346 View Gene Set 7.969e-05 68 0.002561 78 Human and mouse proteases: a comparative genomic approach. www.ncbi.nlm.ni...
PMID 12393749 View Gene Set 9.414e-05 23 0.002987 79 Multiple interactions between RNA polymerase I TIF-IA and TAF(I) subunits regulate preinitiation complex assembly at the ribosomal gene promoter. www.ncbi.nlm.ni...
PMID 17148452 View Gene Set 9.891e-05 87 0.0031 80 Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2. www.ncbi.nlm.ni...
PMID 11125146 View Gene Set 0.0001035 10 0.003202 81 Inhibition of eukaryotic DNA replication by geminin binding to Cdt1. www.ncbi.nlm.ni...
PMID 11714285 View Gene Set 0.0001271 11 0.003389 82 The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function. www.ncbi.nlm.ni...
PMID 12070128 View Gene Set 0.0001168 17 0.003389 82 Human securin proteolysis is controlled by the spindle checkpoint and reveals when the APC/C switches from activation by Cdc20 to Cdh1. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 0.0001141 108 0.003389 82 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 14743216 View Gene Set 0.0001171 132 0.003389 82 A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. www.ncbi.nlm.ni...
PMID 15252450 View Gene Set 0.0001118 49 0.003389 82 Lineage-specific gene duplication and loss in human and great ape evolution. www.ncbi.nlm.ni...
PMID 16055448 View Gene Set 0.0001271 11 0.003389 82 The C-terminal appended domain of human cytosolic leucyl-tRNA synthetase is indispensable in its interaction with arginyl-tRNA synthetase in the multi-tRNA synthetase complex. www.ncbi.nlm.ni...
PMID 17363900 View Gene Set 0.000126 14 0.003389 82 The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. www.ncbi.nlm.ni...
PMID 8052601 View Gene Set 0.0001271 11 0.003389 82 Human cytoplasmic isoleucyl-tRNA synthetase: selective divergence of the anticodon-binding domain and acquisition of a new structural unit. www.ncbi.nlm.ni...
PMID 8078941 View Gene Set 0.0001271 11 0.003389 82 Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer. www.ncbi.nlm.ni...
PMID 8188258 View Gene Set 0.0001271 11 0.003389 82 The human EPRS locus (formerly the QARS locus): a gene encoding a class I and a class II aminoacyl-tRNA synthetase. www.ncbi.nlm.ni...
PMID 8449960 View Gene Set 0.0001271 11 0.003389 82 Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix. www.ncbi.nlm.ni...
PMID 8934526 View Gene Set 0.0001202 25 0.003389 82 Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain. www.ncbi.nlm.ni...
PMID 9278442 View Gene Set 0.0001271 11 0.003389 82 Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant. www.ncbi.nlm.ni...
PMID 10964507 View Gene Set 0.0001318 15 0.003478 95 Heat-shock protein 70 can replace viral protein R of HIV-1 during nuclear import of the viral preintegration complex. www.ncbi.nlm.ni...
PMID 10318877 View Gene Set 0.0001654 10 0.004318 96 Characterization of the DOC1/APC10 subunit of the yeast and the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 18063578 View Gene Set 0.0001676 31 0.004331 97 The layered structure of human mitochondrial DNA nucleoids. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 0.0001725 22 0.004414 98 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 19596235 View Gene Set 0.0001788 85 0.004528 99 Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. www.ncbi.nlm.ni...
PMID 9305922 View Gene Set 0.0002121 12 0.005317 100 Interaction of elongation factors TFIIS and elongin A with a human RNA polymerase II holoenzyme capable of promoter-specific initiation and responsive to transcriptional activators. www.ncbi.nlm.ni...
PMID 8590280 View Gene Set 0.0002329 41 0.005782 101 Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 11205743 View Gene Set 0.0002365 15 0.005814 102 Polo-like kinase interacts with proteasomes and regulates their activity. www.ncbi.nlm.ni...
PMID 15232106 View Gene Set 0.0002491 30 0.006062 103 Self-assembling protein microarrays. www.ncbi.nlm.ni...
PMID 10436018 View Gene Set 0.0002589 15 0.006157 104 The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells. www.ncbi.nlm.ni...
PMID 15815621 View Gene Set 0.0002588 437 0.006157 104 Generation and annotation of the DNA sequences of human chromosomes 2 and 4. www.ncbi.nlm.ni...
PMID 9822671 View Gene Set 0.0002603 10 0.006157 104 Replication factor C disengages from proliferating cell nuclear antigen (PCNA) upon sliding clamp formation and PCNA itself tethers DNA polymerase delta to DNA. www.ncbi.nlm.ni...
PMID 7811265 View Gene Set 0.0002708 16 0.006345 107 Human proteasome subunits from 2-dimensional gels identified by partial sequencing. www.ncbi.nlm.ni...
PMID 11877377 View Gene Set 0.0002778 11 0.00645 108 SMC1 is a downstream effector in the ATM/NBS1 branch of the human S-phase checkpoint. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 0.0002881 22 0.006626 109 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...
PMID 20226869 View Gene Set 0.0003092 25 0.007047 110 Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations. www.ncbi.nlm.ni...
PMID 17577209 View Gene Set 0.0003548 28 0.008014 111 The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing. www.ncbi.nlm.ni...
PMID 10793135 View Gene Set 0.0003794 18 0.008416 112 Mitotic regulation of the APC activator proteins CDC20 and CDH1. www.ncbi.nlm.ni...
PMID 9765201 View Gene Set 0.0003787 33 0.008416 112 The HIV-1 Tat cellular coactivator Tat-SF1 is a general transcription elongation factor. www.ncbi.nlm.ni...
PMID 12956947 View Gene Set 0.0003862 15 0.00842 114 TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1. www.ncbi.nlm.ni...
PMID 19690177 View Gene Set 0.0003861 31 0.00842 114 Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk. www.ncbi.nlm.ni...
PMID 9315662 View Gene Set 0.0003921 18 0.008474 116 CA150 a nuclear protein associated with the RNA polymerase II holoenzyme is involved in Tat-activated human immunodeficiency virus type 1 transcription. www.ncbi.nlm.ni...
PMID 12045100 View Gene Set 0.0004045 18 0.008667 117 DNA replication in eukaryotic cells. www.ncbi.nlm.ni...
PMID 12646563 View Gene Set 0.0004222 20 0.008957 118 Rrn3 becomes inactivated in the process of ribosomal DNA transcription. www.ncbi.nlm.ni...
PMID 14638676 View Gene Set 0.0004252 28 0.008957 118 A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2. www.ncbi.nlm.ni...
PMID 15130578 View Gene Set 0.0004378 22 0.009147 120 Why do cells need an assembly machine for RNA-protein complexes? www.ncbi.nlm.ni...
PMID 16364912 View Gene Set 0.0004472 12 0.009265 121 Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C. www.ncbi.nlm.ni...
PMID 11867769 View Gene Set 0.0005535 22 0.01137 122 The TRAP/Mediator coactivator complex interacts directly with estrogen receptors alpha and beta through the TRAP220 subunit and directly enhances estrogen receptor function in vitro. www.ncbi.nlm.ni...
PMID 10783165 View Gene Set 0.0005746 12 0.01162 123 BASC a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures. www.ncbi.nlm.ni...
PMID 12379213 View Gene Set 0.000573 18 0.01162 123 Transcription factor TFIIH components enhance the GR coactivator activity but not the cell cycle-arresting activity of the human immunodeficiency virus type-1 protein Vpr. www.ncbi.nlm.ni...
PMID 19064571 View Gene Set 0.0005823 75 0.01168 125 Polymorphisms in mitochondrial genes and prostate cancer risk. www.ncbi.nlm.ni...
PMID 9878398 View Gene Set 0.0006057 13 0.01205 126 Macromolecular assemblage of aminoacyl-tRNA synthetases: identification of protein-protein interactions and characterization of a core protein. www.ncbi.nlm.ni...
PMID 10500174 View Gene Set 0.0006106 10 0.01205 127 Expression of the CDH1-associated form of the anaphase-promoting complex in postmitotic neurons. www.ncbi.nlm.ni...
PMID 9878551 View Gene Set 0.0006317 34 0.01237 128 cDNA of eight nuclear encoded subunits of NADH:ubiquinone oxidoreductase: human complex I cDNA characterization completed. www.ncbi.nlm.ni...
PMID 12189208 View Gene Set 0.0006499 12 0.01263 129 Identification of a transcriptionally active peroxisome proliferator-activated receptor alpha -interacting cofactor complex in rat liver and characterization of PRIC285 as a coactivator. www.ncbi.nlm.ni...
PMID 14654843 View Gene Set 0.0006596 26 0.01272 130 Proteomic characterization of the human centrosome by protein correlation profiling. www.ncbi.nlm.ni...
PMID 19237606 View Gene Set 0.0006764 84 0.01294 131 Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 0.0006919 693 0.01314 132 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 17478428 View Gene Set 0.0007133 10 0.01345 133 A proteomic analysis of ataxia telangiectasia-mutated (ATM)/ATM-Rad3-related (ATR) substrates identifies the ubiquitin-proteasome system as a regulator for DNA damage checkpoints. www.ncbi.nlm.ni...
PMID 16051665 View Gene Set 0.0007242 15 0.01355 134 Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes. www.ncbi.nlm.ni...
PMID 19660095 View Gene Set 0.0007774 11 0.01444 135 A synopsis of eukaryotic Nalpha-terminal acetyltransferases: nomenclature subunits and substrates. www.ncbi.nlm.ni...
PMID 8274451 View Gene Set 0.0007983 16 0.01472 136 Identification of 21 novel human protein kinases including 3 members of a family related to the cell cycle regulator nimA of Aspergillus nidulans. www.ncbi.nlm.ni...
PMID 19064565 View Gene Set 0.0008299 13 0.01519 137 Common single-nucleotide polymorphisms in DNA double-strand break repair genes and breast cancer risk. www.ncbi.nlm.ni...
PMID 7821789 View Gene Set 0.0008971 59 0.0163 138 Construction of a human full-length cDNA bank. www.ncbi.nlm.ni...
PMID 15009096 View Gene Set 0.0009204 39 0.01648 139 Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase. www.ncbi.nlm.ni...
PMID 16501559 View Gene Set 0.0009201 12 0.01648 139 Analysis of the human protein interactome and comparison with yeast worm and fly interaction datasets. www.ncbi.nlm.ni...
PMID 15220921 View Gene Set 0.0009475 10 0.01673 141 A new tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A. www.ncbi.nlm.ni...
PMID 18485873 View Gene Set 0.0009437 13 0.01673 141 Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 17525332 View Gene Set 0.001068 22 0.01864 143 ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. www.ncbi.nlm.ni...
PMID 20193073 View Gene Set 0.001071 52 0.01864 143 Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. www.ncbi.nlm.ni...
PMID 15146077 View Gene Set 0.00114 32 0.01971 145 The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. www.ncbi.nlm.ni...
PMID 15456888 View Gene Set 0.001149 24 0.01974 146 The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo. www.ncbi.nlm.ni...
PMID 9653160 View Gene Set 0.001193 36 0.02035 147 Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 0.001275 68 0.0216 148 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 0.001346 24 0.02265 149 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 19138993 View Gene Set 0.001407 25 0.02351 150 Genetic variations in microRNA-related genes are novel susceptibility loci for esophageal cancer risk. www.ncbi.nlm.ni...
PMID 10851237 View Gene Set 0.001474 11 0.02385 151 Specific sequences of the Sm and Sm-like (Lsm) proteins mediate their interaction with the spinal muscular atrophy disease gene product (SMN). www.ncbi.nlm.ni...
PMID 9184228 View Gene Set 0.001474 21 0.02385 151 Purification of a Tat-associated kinase reveals a TFIIH complex that modulates HIV-1 transcription. www.ncbi.nlm.ni...
PMID 9334327 View Gene Set 0.001474 21 0.02385 151 The HIV transactivator TAT binds to the CDK-activating kinase and activates the phosphorylation of the carboxy-terminal domain of RNA polymerase II. www.ncbi.nlm.ni...
PMID 9512541 View Gene Set 0.001458 26 0.02385 151 Isolation and characterization of a human cDNA for mRNA 5'-capping enzyme. www.ncbi.nlm.ni...
PMID 9790902 View Gene Set 0.001458 26 0.02385 151 Cloning and characterization of three human cDNAs encoding mRNA (guanine-7-)-methyltransferase an mRNA cap methylase. www.ncbi.nlm.ni...
PMID 12515382 View Gene Set 0.001643 10 0.02617 156 The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci. www.ncbi.nlm.ni...
PMID 9582279 View Gene Set 0.001649 23 0.02617 156 Cloning and functional characterization of PTRF a novel protein which induces dissociation of paused ternary transcription complexes. www.ncbi.nlm.ni...
PMID 9874563 View Gene Set 0.001649 16 0.02617 156 The HIV-1 virion-associated protein vpr is a coactivator of the human glucocorticoid receptor. www.ncbi.nlm.ni...
PMID 15989967 View Gene Set 0.001693 34 0.02655 159 MED1/TRAP220 exists predominantly in a TRAP/ Mediator subpopulation enriched in RNA polymerase II and is required for ER-mediated transcription. www.ncbi.nlm.ni...
PMID 18270339 View Gene Set 0.001695 57 0.02655 159 Comprehensive analysis of DNA repair gene variants and risk of meningioma. www.ncbi.nlm.ni...
PMID 14733938 View Gene Set 0.001731 13 0.02696 161 Protein-protein interactions among human 20S proteasome subunits and proteassemblin. www.ncbi.nlm.ni...
PMID 11279123 View Gene Set 0.00186 31 0.02879 162 The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 12611891 View Gene Set 0.001881 40 0.02893 163 The subunit composition of the human NADH dehydrogenase obtained by rapid one-step immunopurification. www.ncbi.nlm.ni...
PMID 9039502 View Gene Set 0.00201 84 0.03073 164 Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. www.ncbi.nlm.ni...
PMID 11279069 View Gene Set 0.002131 15 0.03238 165 Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. www.ncbi.nlm.ni...
PMID 16085932 View Gene Set 0.002206 18 0.03331 166 A novel evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity. www.ncbi.nlm.ni...
PMID 11329013 View Gene Set 0.002301 143 0.03454 167 Creation of genome-wide protein expression libraries using random activation of gene expression. www.ncbi.nlm.ni...
PMID 10066804 View Gene Set 0.002547 24 0.03733 168 Tat-associated kinase (P-TEFb): a component of transcription preinitiation and elongation complexes. www.ncbi.nlm.ni...
PMID 10548110 View Gene Set 0.002536 16 0.03733 168 Accumulation of cyclin B1 requires E2F and cyclin-A-dependent rearrangement of the anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 11340163 View Gene Set 0.002536 16 0.03733 168 A conserved cyclin-binding domain determines functional interplay between anaphase-promoting complex-Cdh1 and cyclin A-Cdk2 during cell cycle progression. www.ncbi.nlm.ni...
PMID 14574404 View Gene Set 0.002525 615 0.03733 168 The DNA sequence and analysis of human chromosome 6. www.ncbi.nlm.ni...
PMID 9852112 View Gene Set 0.002593 20 0.0378 172 Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes. www.ncbi.nlm.ni...
PMID 19468067 View Gene Set 0.002622 10 0.038 173 Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly. www.ncbi.nlm.ni...
PMID 12805554 View Gene Set 0.002759 23 0.03975 174 Comprehensive identification of human bZIP interactions with coiled-coil arrays. www.ncbi.nlm.ni...
PMID 12607005 View Gene Set 0.002923 11 0.04187 175 MDC1 is a mediator of the mammalian DNA damage checkpoint. www.ncbi.nlm.ni...
PMID 10922056 View Gene Set 0.002973 12 0.04211 176 The RING-H2 finger protein APC11 and the E2 enzyme UBC4 are sufficient to ubiquitinate substrates of the anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 17494052 View Gene Set 0.002967 10 0.04211 176 Polymorphism discovery in 62 DNA repair genes and haplotype associations with risks for lung and head and neck cancers. www.ncbi.nlm.ni...
PMID 10583946 View Gene Set 0.003081 28 0.04315 178 Quality control by DNA repair. www.ncbi.nlm.ni...
PMID 9763677 View Gene Set 0.00308 15 0.04315 178 Intron based radiation hybrid mapping of 15 complex I genes of the human electron transport chain. www.ncbi.nlm.ni...
PMID 8764062 View Gene Set 0.003376 18 0.04703 180 Interaction of human immunodeficiency virus type 1 Tat with a unique site of TFIID inhibits negative cofactor Dr1 and stabilizes the TFIID-TFIIA complex. www.ncbi.nlm.ni...
PMID 10725331 View Gene Set 0.003435 14 0.04736 181 Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli. www.ncbi.nlm.ni...
PMID 17466952 View Gene Set 0.003439 11 0.04736 181 Role of IKK and ERK pathways in intrinsic inflammation of cystic fibrosis airways. www.ncbi.nlm.ni...
PMID 15334068 View Gene Set 0.003485 19 0.04775 183 Suppression subtractive hybridization and expression profiling identifies a unique set of genes overexpressed in non-small-cell lung cancer. www.ncbi.nlm.ni...
PMID 10214908 View Gene Set 0.003609 20 0.04891 184 DNA damage recognition during nucleotide excision repair in mammalian cells. www.ncbi.nlm.ni...
PMID 11714716 View Gene Set 0.003605 13 0.04891 184 Gemin5 a novel WD repeat protein component of the SMN complex that binds Sm proteins. www.ncbi.nlm.ni...
PMID 16622420 View Gene Set 0.003666 14 0.04941 186 The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres. www.ncbi.nlm.ni...
PMID 10531003 View Gene Set 0.003688 15 0.04945 187 Newly assembled snRNPs associate with coiled bodies before speckles suggesting a nuclear snRNP maturation pathway. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr13_45-50Mb View Gene Set 9.769e-05 25 0.02721 1 Genomic tile: chr13 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr1_90-95Mb View Gene Set 8.772e-05 24 0.02721 1 Genomic tile: chr1 ; 90000001-95000001 Mb genome.ucsc.edu...
Null chr1_92.5-97.5Mb View Gene Set 6.619e-05 20 0.02721 1 Genomic tile: chr1 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr2_42.5-47.5Mb View Gene Set 7.063e-05 29 0.02721 1 Genomic tile: chr2 ; 42500001-47500001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 5.61e-08 229 4.124e-05 1 RRM expasy.org/pros...
Null PS50103 View Gene Set 2.551e-06 60 0.000823 2 ZF_C3H1 expasy.org/pros...
Null PS51194 View Gene Set 3.359e-06 113 0.000823 2 HELICASE_CTER expasy.org/pros...
Null PS51192 View Gene Set 7.037e-06 112 0.001293 4 HELICASE_ATP_BIND_1 expasy.org/pros...
Null PS50235 View Gene Set 1.791e-05 83 0.002632 5 UCH_2_3 expasy.org/pros...
Null PS50076 View Gene Set 2.25e-05 51 0.002756 6 DNAJ_2 expasy.org/pros...
Null PS50237 View Gene Set 7.178e-05 29 0.007537 7 HECT expasy.org/pros...
Null PS00973 View Gene Set 8.485e-05 75 0.007796 8 UCH_2_2 expasy.org/pros...
Null PS00972 View Gene Set 0.0001404 72 0.01147 9 UCH_2_1 expasy.org/pros...
Null PS00388 View Gene Set 0.0004392 8 0.02625 10 PROTEASOME_A_1 expasy.org/pros...
Null PS00633 View Gene Set 0.0005285 26 0.02625 10 BROMODOMAIN_1 expasy.org/pros...
Null PS00674 View Gene Set 0.000407 29 0.02625 10 AAA expasy.org/pros...
Null PS50128 View Gene Set 0.0004171 6 0.02625 10 SURP expasy.org/pros...
Null PS50174 View Gene Set 0.0005356 25 0.02625 10 G_PATCH expasy.org/pros...
Null PS50896 View Gene Set 0.0005159 28 0.02625 10 LISH expasy.org/pros...
Null PS50294 View Gene Set 0.0007252 245 0.03331 16 WD_REPEATS_REGION expasy.org/pros...
Null PS50006 View Gene Set 0.0007756 22 0.03353 17 FHA_DOMAIN expasy.org/pros...
Null PS50072 View Gene Set 0.0009649 35 0.03732 18 CSA_PPIASE_2 expasy.org/pros...
Null PS50137 View Gene Set 0.0009282 20 0.03732 18 DS_RBD expasy.org/pros...
Null PS00678 View Gene Set 0.001182 168 0.04345 20 WD_REPEATS_1 expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:3.4.25.1 View Gene Set 0.0001001 20 0.01581 1 Proteasome endopeptidase complex expasy.org/enzy...
Null EC:1.6.5.3 View Gene Set 0.000571 43 0.02949 2 NADH dehydrogenase (ubiquinone) expasy.org/enzy...
Null EC:1.6.99.3 View Gene Set 0.000571 35 0.02949 2 NADH dehydrogenase expasy.org/enzy...
Null EC:6.3.2.19 View Gene Set 0.0007466 79 0.02949 2 Ubiquitin--protein ligase expasy.org/enzy...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 2.397e-09 236 5.507e-06 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.RPAP2 View Gene Set 1.278e-06 43 0.001468 2 Protein-protein-interaction for RPAP2 www.ncbi.nlm.ni...
Null ppi.MED19 View Gene Set 2.928e-06 45 0.002242 3 Protein-protein-interaction for MED19 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 5.024e-06 147 0.002885 4 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.MED29 View Gene Set 3.484e-05 37 0.016 5 Protein-protein-interaction for MED29 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 4.553e-05 11 0.01743 6 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.PSMD14 View Gene Set 9.551e-05 16 0.01926 7 Protein-protein-interaction for PSMD14 www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 0.000109 38 0.01926 7 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 7.644e-05 33 0.01926 7 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.KIAA1377 View Gene Set 9.389e-05 57 0.01926 7 Protein-protein-interaction for KIAA1377 www.ncbi.nlm.ni...
Null ppi.MED28 View Gene Set 6.06e-05 37 0.01926 7 Protein-protein-interaction for MED28 www.ncbi.nlm.ni...
Null ppi.EPC1 View Gene Set 0.0001039 7 0.01926 7 Protein-protein-interaction for EPC1 www.ncbi.nlm.ni...
Null ppi.MED10 View Gene Set 7.705e-05 44 0.01926 7 Protein-protein-interaction for MED10 www.ncbi.nlm.ni...
Null ppi.MED30 View Gene Set 0.0001209 26 0.01983 14 Protein-protein-interaction for MED30 www.ncbi.nlm.ni...
Null ppi.NUP43 View Gene Set 0.0001502 6 0.01995 15 Protein-protein-interaction for NUP43 www.ncbi.nlm.ni...
Null ppi.BRCC3 View Gene Set 0.0001545 22 0.01995 15 Protein-protein-interaction for BRCC3 www.ncbi.nlm.ni...
Null ppi.PAAF1 View Gene Set 0.0001436 20 0.01995 15 Protein-protein-interaction for PAAF1 www.ncbi.nlm.ni...
Null ppi.SEH1L View Gene Set 0.0001563 6 0.01995 15 Protein-protein-interaction for SEH1L www.ncbi.nlm.ni...
Null ppi.PSMD13 View Gene Set 0.0001785 20 0.02157 19 Protein-protein-interaction for PSMD13 www.ncbi.nlm.ni...
Null ppi.PSMD6 View Gene Set 0.000196 21 0.02251 20 Protein-protein-interaction for PSMD6 www.ncbi.nlm.ni...
Null ppi.GTF2H4 View Gene Set 0.0002694 8 0.0269 21 Protein-protein-interaction for GTF2H4 www.ncbi.nlm.ni...
Null ppi.RNMTL1 View Gene Set 0.0002471 8 0.0269 21 Protein-protein-interaction for RNMTL1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 0.0002603 168 0.0269 21 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.UBQLN2 View Gene Set 0.0003017 7 0.02887 24 Protein-protein-interaction for UBQLN2 www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 0.0003151 9 0.02896 25 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.MED9 View Gene Set 0.0003924 31 0.03467 26 Protein-protein-interaction for MED9 www.ncbi.nlm.ni...
Null ppi.CDC16 View Gene Set 0.0004239 10 0.03606 27 Protein-protein-interaction for CDC16 www.ncbi.nlm.ni...
Null ppi.C8orf41 View Gene Set 0.0005316 10 0.04361 28 Protein-protein-interaction for C8orf41 www.ncbi.nlm.ni...
Null ppi.LSM1 View Gene Set 0.0006182 13 0.04775 29 Protein-protein-interaction for LSM1 www.ncbi.nlm.ni...
Null ppi.KCNIP3 View Gene Set 0.0006312 7 0.04775 29 Protein-protein-interaction for KCNIP3 www.ncbi.nlm.ni...
Null ppi.ARID4B View Gene Set 0.0006653 8 0.04775 29 Protein-protein-interaction for ARID4B www.ncbi.nlm.ni...
Null ppi.ANAPC1 View Gene Set 0.0006469 15 0.04775 29 Protein-protein-interaction for ANAPC1 www.ncbi.nlm.ni...
Null ppi.CHTF18 View Gene Set 0.0007252 13 0.04899 33 Protein-protein-interaction for CHTF18 www.ncbi.nlm.ni...
Null ppi.TNFAIP3 View Gene Set 0.0007233 13 0.04899 33 Protein-protein-interaction for TNFAIP3 www.ncbi.nlm.ni...
Null ppi.TIMM13 View Gene Set 0.0007513 6 0.04931 35 Protein-protein-interaction for TIMM13 www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.ORC3L View Gene Set 8.716e-06 13 0.02069 1 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.NDC80 View Gene Set 2.881e-05 10 0.0342 2 Protein-protein-interaction for NDC80 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 4.775e-10 251 1.716e-06 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.RPAP2 View Gene Set 1.278e-06 43 0.002297 2 Protein-protein-interaction for RPAP2 www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 2.701e-06 44 0.002427 3 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.MED19 View Gene Set 2.198e-06 47 0.002427 3 Protein-protein-interaction for MED19 www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 4.862e-06 16 0.003009 5 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 5.024e-06 147 0.003009 5 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.MED29 View Gene Set 1.584e-05 38 0.008133 7 Protein-protein-interaction for MED29 www.ncbi.nlm.ni...
Null ppi.NDC80 View Gene Set 2.881e-05 10 0.01188 8 Protein-protein-interaction for NDC80 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 3.305e-05 15 0.01188 8 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.NAA38 View Gene Set 2.976e-05 28 0.01188 8 Protein-protein-interaction for NAA38 www.ncbi.nlm.ni...
Null ppi.PSMD14 View Gene Set 9.551e-05 16 0.02448 11 Protein-protein-interaction for PSMD14 www.ncbi.nlm.ni...
Null ppi.GTF2H4 View Gene Set 0.0001228 9 0.02448 11 Protein-protein-interaction for GTF2H4 www.ncbi.nlm.ni...
Null ppi.NUP43 View Gene Set 0.0001502 6 0.02448 11 Protein-protein-interaction for NUP43 www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 0.0001297 34 0.02448 11 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.LSM7 View Gene Set 0.0001239 17 0.02448 11 Protein-protein-interaction for LSM7 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 0.0001253 220 0.02448 11 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.BRCC3 View Gene Set 0.0001545 22 0.02448 11 Protein-protein-interaction for BRCC3 www.ncbi.nlm.ni...
Null ppi.PAAF1 View Gene Set 0.0001436 20 0.02448 11 Protein-protein-interaction for PAAF1 www.ncbi.nlm.ni...
Null ppi.MED28 View Gene Set 8.66e-05 40 0.02448 11 Protein-protein-interaction for MED28 www.ncbi.nlm.ni...
Null ppi.SEH1L View Gene Set 0.0001563 6 0.02448 11 Protein-protein-interaction for SEH1L www.ncbi.nlm.ni...
Null ppi.MED10 View Gene Set 7.676e-05 46 0.02448 11 Protein-protein-interaction for MED10 www.ncbi.nlm.ni...
Null ppi.MED30 View Gene Set 0.0001209 26 0.02448 11 Protein-protein-interaction for MED30 www.ncbi.nlm.ni...
Null ppi.PSMD6 View Gene Set 0.0001567 23 0.02448 11 Protein-protein-interaction for PSMD6 www.ncbi.nlm.ni...
Null ppi.KPNA6 View Gene Set 0.0001684 12 0.02462 24 Protein-protein-interaction for KPNA6 www.ncbi.nlm.ni...
Null ppi.KCNIP3 View Gene Set 0.0001782 8 0.02462 24 Protein-protein-interaction for KCNIP3 www.ncbi.nlm.ni...
Null ppi.PSMD13 View Gene Set 0.0001785 20 0.02462 24 Protein-protein-interaction for PSMD13 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 0.0001849 42 0.02462 24 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.PPIH View Gene Set 0.0002089 6 0.02682 28 Protein-protein-interaction for PPIH www.ncbi.nlm.ni...
Null ppi.RNMTL1 View Gene Set 0.0002471 8 0.03062 29 Protein-protein-interaction for RNMTL1 www.ncbi.nlm.ni...
Null ppi.CDC16 View Gene Set 0.0002565 14 0.03073 30 Protein-protein-interaction for CDC16 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 0.0003989 12 0.04625 31 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.NUF2 View Gene Set 0.0004385 7 0.04925 32 Protein-protein-interaction for NUF2 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TNF alpha/NF-kB View Gene Set 2.853e-05 170 0.0002853 1 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Polo-like kinase signaling events in the cell cycle View Gene Set 7.052e-06 109 0.001312 1 NCI_NATURE - Polo-like kinase signaling events in the cell cycle gene set www.pathwaycomm...
Null PLK1 signaling events View Gene Set 2.433e-05 104 0.002263 2 NCI_NATURE - PLK1 signaling events gene set www.pathwaycomm...
Null E2F transcription factor network View Gene Set 0.0002922 73 0.01812 3 NCI_NATURE - E2F transcription factor network gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.0004102 29 0.01907 4 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...
Null Aurora B signaling View Gene Set 0.001015 41 0.03776 5 NCI_NATURE - Aurora B signaling gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Cell Cycle Mitotic View Gene Set 2.311e-23 312 2.582e-20 1 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null DNA Replication View Gene Set 6.704e-23 200 3.744e-20 2 REACTOME - DNA Replication gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 3.259e-19 180 1.213e-16 3 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null Gene Expression View Gene Set 1.188e-18 381 3.318e-16 4 REACTOME - Gene Expression gene set www.pathwaycomm...
Null Cell Cycle Checkpoints View Gene Set 2.337e-14 124 5.22e-12 5 REACTOME - Cell Cycle Checkpoints gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 2.182e-13 174 4.063e-11 6 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null S Phase View Gene Set 4.019e-13 113 6.414e-11 7 REACTOME - S Phase gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 5.167e-12 102 7.214e-10 8 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null M Phase View Gene Set 7.217e-12 90 8.957e-10 9 REACTOME - M Phase gene set www.pathwaycomm...
Null Mitotic Prometaphase View Gene Set 3.589e-11 86 3.644e-09 10 REACTOME - Mitotic Prometaphase gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 3.427e-11 104 3.644e-09 10 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 6.863e-11 185 6.388e-09 12 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 2.203e-10 113 1.893e-08 13 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 2.961e-10 86 2.362e-08 14 REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Regulation of mitotic cell cycle View Gene Set 3.538e-10 95 2.47e-08 15 REACTOME - Regulation of mitotic cell cycle gene set www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins View Gene Set 3.538e-10 95 2.47e-08 15 REACTOME - APC/C-mediated degradation of cell cycle proteins gene set www.pathwaycomm...
Null HIV Infection View Gene Set 1.508e-09 194 9.906e-08 17 REACTOME - HIV Infection gene set www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase View Gene Set 2.039e-09 88 1.265e-07 18 REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set www.pathwaycomm...
Null Removal of licensing factors from origins View Gene Set 2.215e-09 78 1.302e-07 19 REACTOME - Removal of licensing factors from origins gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 2.357e-09 158 1.316e-07 20 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null DNA Replication Pre-Initiation View Gene Set 3.178e-09 90 1.614e-07 21 REACTOME - DNA Replication Pre-Initiation gene set www.pathwaycomm...
Null M/G1 Transition View Gene Set 3.178e-09 90 1.614e-07 21 REACTOME - M/G1 Transition gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 3.693e-09 77 1.793e-07 23 REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Regulation of DNA replication View Gene Set 4.496e-09 81 2.093e-07 24 REACTOME - Regulation of DNA replication gene set www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 View Gene Set 6.141e-09 77 2.744e-07 25 REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A View Gene Set 8.481e-09 75 3.643e-07 26 REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set www.pathwaycomm...
Null Switching of origins to a post-replicative state View Gene Set 1.128e-08 76 4.5e-07 27 REACTOME - Switching of origins to a post-replicative state gene set www.pathwaycomm...
Null Orc1 removal from chromatin View Gene Set 1.128e-08 76 4.5e-07 27 REACTOME - Orc1 removal from chromatin gene set www.pathwaycomm...
Null Assembly of the pre-replicative complex View Gene Set 2.11e-08 75 8.129e-07 29 REACTOME - Assembly of the pre-replicative complex gene set www.pathwaycomm...
Null snRNP Assembly View Gene Set 2.394e-08 50 8.627e-07 30 REACTOME - snRNP Assembly gene set www.pathwaycomm...
Null Metabolism of non-coding RNA View Gene Set 2.394e-08 50 8.627e-07 30 REACTOME - Metabolism of non-coding RNA gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Securin View Gene Set 2.687e-08 72 9.38e-07 32 REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex View Gene Set 2.842e-08 66 9.621e-07 33 REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 3.674e-08 138 1.207e-06 34 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null Transcription View Gene Set 5.351e-08 178 1.708e-06 35 REACTOME - Transcription gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 6.572e-08 51 2.039e-06 36 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null Late Phase of HIV Life Cycle View Gene Set 8.027e-08 92 2.423e-06 37 REACTOME - Late Phase of HIV Life Cycle gene set www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C View Gene Set 1.253e-07 67 3.682e-06 38 REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 1.297e-07 55 3.713e-06 39 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA View Gene Set 2.616e-07 33 7.305e-06 40 REACTOME - Transport of the SLBP Dependant Mature mRNA gene set www.pathwaycomm...
Null RNA Polymerase II Transcription View Gene Set 3.275e-07 101 8.711e-06 41 REACTOME - RNA Polymerase II Transcription gene set www.pathwaycomm...
Null Cyclin E associated events during G1/S transition View Gene Set 3.213e-07 64 8.711e-06 41 REACTOME - Cyclin E associated events during G1/S transition gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 3.408e-07 43 8.854e-06 43 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry View Gene Set 3.619e-07 62 9.188e-06 44 REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 3.948e-07 103 9.799e-06 45 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null Metabolism of mRNA View Gene Set 4.268e-07 125 1.036e-05 46 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 6.77e-07 32 1.609e-05 47 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null DNA Repair View Gene Set 7.437e-07 108 1.731e-05 48 REACTOME - DNA Repair gene set www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A View Gene Set 7.783e-07 61 1.774e-05 49 REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus View Gene Set 1.259e-06 29 2.812e-05 50 REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts View Gene Set 1.652e-06 36 3.617e-05 51 REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 1.983e-06 69 4.26e-05 52 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 2.224e-06 37 4.687e-05 53 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint View Gene Set 2.758e-06 62 5.501e-05 54 REACTOME - p53-Independent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Independent DNA Damage Response View Gene Set 2.758e-06 62 5.501e-05 54 REACTOME - p53-Independent DNA Damage Response gene set www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0) View Gene Set 2.69e-06 63 5.501e-05 54 REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set www.pathwaycomm...
Null Influenza Life Cycle View Gene Set 3.445e-06 138 6.751e-05 57 REACTOME - Influenza Life Cycle gene set www.pathwaycomm...
Null Regulation of activated PAK-2p34 by proteasome mediated degradation View Gene Set 3.53e-06 57 6.798e-05 58 REACTOME - Regulation of activated PAK-2p34 by proteasome mediated degradation gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1 View Gene Set 3.853e-06 59 7.174e-05 59 REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D View Gene Set 3.853e-06 59 7.174e-05 59 REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 4.08e-06 35 7.471e-05 61 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null HIV-1 Transcription Initiation View Gene Set 5.409e-06 40 8.885e-05 62 REACTOME - HIV-1 Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase II HIV-1 Promoter Escape View Gene Set 5.409e-06 40 8.885e-05 62 REACTOME - RNA Polymerase II HIV-1 Promoter Escape gene set www.pathwaycomm...
Null RNA Polymerase II Promoter Escape View Gene Set 5.409e-06 40 8.885e-05 62 REACTOME - RNA Polymerase II Promoter Escape gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Initiation And Promoter Clearance View Gene Set 5.409e-06 40 8.885e-05 62 REACTOME - RNA Polymerase II Transcription Initiation And Promoter Clearance gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Initiation View Gene Set 5.409e-06 40 8.885e-05 62 REACTOME - RNA Polymerase II Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Pre-Initiation And Promoter Opening View Gene Set 5.409e-06 40 8.885e-05 62 REACTOME - RNA Polymerase II Transcription Pre-Initiation And Promoter Opening gene set www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1 View Gene Set 5.204e-06 60 8.885e-05 62 REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 6.565e-06 31 0.0001063 69 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null Degradation of beta-catenin by the destruction complex View Gene Set 7.001e-06 56 0.0001101 70 REACTOME - Degradation of beta-catenin by the destruction complex gene set www.pathwaycomm...
Null Signaling by Wnt View Gene Set 7.001e-06 56 0.0001101 70 REACTOME - Signaling by Wnt gene set www.pathwaycomm...
Null Host Interactions of HIV factors View Gene Set 7.991e-06 132 0.000124 72 REACTOME - Host Interactions of HIV factors gene set www.pathwaycomm...
Null Vif-mediated degradation of APOBEC3G View Gene Set 8.159e-06 61 0.0001248 73 REACTOME - Vif-mediated degradation of APOBEC3G gene set www.pathwaycomm...
Null Autodegradation of the E3 ubiquitin ligase COP1 View Gene Set 9.641e-06 60 0.0001417 74 REACTOME - Autodegradation of the E3 ubiquitin ligase COP1 gene set www.pathwaycomm...
Null Influenza Infection View Gene Set 9.538e-06 143 0.0001417 74 REACTOME - Influenza Infection gene set www.pathwaycomm...
Null CDK-mediated phosphorylation and removal of Cdc6 View Gene Set 9.581e-06 58 0.0001417 74 REACTOME - CDK-mediated phosphorylation and removal of Cdc6 gene set www.pathwaycomm...
Null G1/S DNA Damage Checkpoints View Gene Set 1.129e-05 68 0.0001638 77 REACTOME - G1/S DNA Damage Checkpoints gene set www.pathwaycomm...
Null Interactions of Vpr with host cellular proteins View Gene Set 1.162e-05 34 0.0001664 78 REACTOME - Interactions of Vpr with host cellular proteins gene set www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements View Gene Set 1.286e-05 95 0.0001818 79 REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus View Gene Set 1.313e-05 31 0.0001833 80 REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set www.pathwaycomm...
Null Vpu mediated degradation of CD4 View Gene Set 1.462e-05 57 0.0002016 81 REACTOME - Vpu mediated degradation of CD4 gene set www.pathwaycomm...
Null Regulation of ornithine decarboxylase (ODC) View Gene Set 1.504e-05 62 0.0002049 82 REACTOME - Regulation of ornithine decarboxylase (ODC) gene set www.pathwaycomm...
Null SCF(Skp2)-mediated degradation of p27/p21 View Gene Set 1.528e-05 52 0.0002057 83 REACTOME - SCF(Skp2)-mediated degradation of p27/p21 gene set www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs View Gene Set 1.553e-05 31 0.0002066 84 REACTOME - Vpr-mediated nuclear import of PICs gene set www.pathwaycomm...
Null Nuclear import of Rev protein View Gene Set 1.576e-05 30 0.0002072 85 REACTOME - Nuclear import of Rev protein gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 1.699e-05 29 0.0002206 86 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Dependent G1/S DNA damage checkpoint View Gene Set 2.104e-05 64 0.000267 87 REACTOME - p53-Dependent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Dependent G1 DNA Damage Response View Gene Set 2.104e-05 64 0.000267 87 REACTOME - p53-Dependent G1 DNA Damage Response gene set www.pathwaycomm...
Null Phosphorylation of the APC/C View Gene Set 2.152e-05 26 0.00027 89 REACTOME - Phosphorylation of the APC/C gene set www.pathwaycomm...
Null Stabilization of p53 View Gene Set 2.182e-05 61 0.0002708 90 REACTOME - Stabilization of p53 gene set www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components View Gene Set 2.341e-05 18 0.0002842 91 REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex View Gene Set 2.341e-05 18 0.0002842 91 REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set www.pathwaycomm...
Null E2F mediated regulation of DNA replication View Gene Set 2.496e-05 28 0.0002997 93 REACTOME - E2F mediated regulation of DNA replication gene set www.pathwaycomm...
Null Regulation of Apoptosis View Gene Set 2.876e-05 66 0.0003382 94 REACTOME - Regulation of Apoptosis gene set www.pathwaycomm...
Null RNA Polymerase II Pre-transcription Events View Gene Set 2.876e-05 58 0.0003382 94 REACTOME - RNA Polymerase II Pre-transcription Events gene set www.pathwaycomm...
Null Regulation of Glucokinase by Glucokinase Regulatory Protein View Gene Set 2.961e-05 29 0.0003445 96 REACTOME - Regulation of Glucokinase by Glucokinase Regulatory Protein gene set www.pathwaycomm...
Null Transcription of the HIV genome View Gene Set 3.036e-05 60 0.0003496 97 REACTOME - Transcription of the HIV genome gene set www.pathwaycomm...
Null Mitotic Spindle Checkpoint View Gene Set 3.248e-05 19 0.0003692 98 REACTOME - Mitotic Spindle Checkpoint gene set www.pathwaycomm...
Null NEP/NS2 Interacts with the Cellular Export Machinery View Gene Set 3.272e-05 29 0.0003692 98 REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set www.pathwaycomm...
Null Metabolism of proteins View Gene Set 6.341e-05 263 0.0007083 100 REACTOME - Metabolism of proteins gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 6.503e-05 30 0.0007192 101 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null APC-Cdc20 mediated degradation of Nek2A View Gene Set 7.527e-05 23 0.0008243 102 REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set www.pathwaycomm...
Null mRNA Splicing - Minor Pathway View Gene Set 8.607e-05 42 0.0009334 103 REACTOME - mRNA Splicing - Minor Pathway gene set www.pathwaycomm...
Null tRNA Aminoacylation View Gene Set 0.0001059 42 0.001138 104 REACTOME - tRNA Aminoacylation gene set www.pathwaycomm...
Null Generic Transcription Pathway View Gene Set 0.0001429 35 0.00152 105 REACTOME - Generic Transcription Pathway gene set www.pathwaycomm...
Null Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. View Gene Set 0.0001806 91 0.001903 106 REACTOME - Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. gene set www.pathwaycomm... ATP synthesis b... and heat produc...
Null Interactions of Rev with host cellular proteins View Gene Set 0.0001833 33 0.001914 107 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 0.0001903 93 0.001951 108 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null Global Genomic NER (GG-NER) View Gene Set 0.0001922 35 0.001951 108 REACTOME - Global Genomic NER (GG-NER) gene set www.pathwaycomm...
Null Lagging Strand Synthesis View Gene Set 0.0001917 20 0.001951 108 REACTOME - Lagging Strand Synthesis gene set www.pathwaycomm...
Null mRNA Splicing - Major Pathway View Gene Set 0.0001967 107 0.001961 111 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 0.0001967 107 0.001961 111 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase View Gene Set 0.0002003 16 0.00198 113 REACTOME - Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase gene set www.pathwaycomm...
Null Translation View Gene Set 0.0002363 120 0.002316 114 REACTOME - Translation gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 0.0003014 49 0.002927 115 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 0.0003112 28 0.002997 116 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null Glucose transport View Gene Set 0.0003373 38 0.003221 117 REACTOME - Glucose transport gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 0.0003635 32 0.003441 118 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null Formation of the HIV-1 Early Elongation Complex View Gene Set 0.0003714 32 0.003458 119 REACTOME - Formation of the HIV-1 Early Elongation Complex gene set www.pathwaycomm...
Null Formation of the Early Elongation Complex View Gene Set 0.0003714 32 0.003458 119 REACTOME - Formation of the Early Elongation Complex gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Termination View Gene Set 0.0004115 22 0.003768 121 REACTOME - RNA Polymerase I Transcription Termination gene set www.pathwaycomm...
Null Assembly of the ORC complex at the origin of replication View Gene Set 0.0004097 6 0.003768 121 REACTOME - Assembly of the ORC complex at the origin of replication gene set www.pathwaycomm...
Null Nucleotide Excision Repair View Gene Set 0.0004185 51 0.003801 123 REACTOME - Nucleotide Excision Repair gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Escape View Gene Set 0.0004222 21 0.003804 124 REACTOME - RNA Polymerase I Promoter Escape gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Initiation View Gene Set 0.0004295 25 0.003838 125 REACTOME - RNA Polymerase I Transcription Initiation gene set www.pathwaycomm...
Null E2F-enabled inhibition of pre-replication complex formation View Gene Set 0.0004516 10 0.004004 126 REACTOME - E2F-enabled inhibition of pre-replication complex formation gene set www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis View Gene Set 0.0005675 22 0.004961 127 REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set www.pathwaycomm...
Null Cap-dependent Translation Initiation View Gene Set 0.0005729 113 0.004961 127 REACTOME - Cap-dependent Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Initiation View Gene Set 0.0005729 113 0.004961 127 REACTOME - Eukaryotic Translation Initiation gene set www.pathwaycomm...
Null Respiratory electron transport View Gene Set 0.0005848 76 0.005025 130 REACTOME - Respiratory electron transport gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Cyclin B View Gene Set 0.0006471 22 0.005517 131 REACTOME - APC/C:Cdc20 mediated degradation of Cyclin B gene set www.pathwaycomm...
Null mRNA Capping View Gene Set 0.0006932 29 0.005866 132 REACTOME - mRNA Capping gene set www.pathwaycomm...
Null Post-Elongation Processing of the Transcript View Gene Set 0.0008536 43 0.007011 133 REACTOME - Post-Elongation Processing of the Transcript gene set www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region View Gene Set 0.0008536 43 0.007011 133 REACTOME - Cleavage of Growing Transcript in the Termination Region gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Termination View Gene Set 0.0008536 43 0.007011 133 REACTOME - RNA Polymerase II Transcription Termination gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 0.0008359 96 0.007011 133 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null mRNA Decay by 5' to 3' Exoribonuclease View Gene Set 0.0008864 13 0.007227 137 REACTOME - mRNA Decay by 5' to 3' Exoribonuclease gene set www.pathwaycomm...
Null MicroRNA (miRNA) Biogenesis View Gene Set 0.0009005 22 0.007236 138 REACTOME - MicroRNA (miRNA) Biogenesis gene set www.pathwaycomm...
Null Regulatory RNA pathways View Gene Set 0.0009005 22 0.007236 138 REACTOME - Regulatory RNA pathways gene set www.pathwaycomm...
Null Transcription-coupled NER (TC-NER) View Gene Set 0.0009212 45 0.007297 140 REACTOME - Transcription-coupled NER (TC-NER) gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 0.0009202 98 0.007297 140 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null Influenza Viral RNA Transcription and Replication View Gene Set 0.0009858 101 0.007754 142 REACTOME - Influenza Viral RNA Transcription and Replication gene set www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere View Gene Set 0.001315 35 0.0102 143 REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set www.pathwaycomm...
Null Nucleosome assembly View Gene Set 0.001315 35 0.0102 143 REACTOME - Nucleosome assembly gene set www.pathwaycomm...
Null SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs View Gene Set 0.001466 11 0.01114 145 REACTOME - SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs gene set www.pathwaycomm...
Null RNA Pol II CTD phosphorylation and interaction with CE View Gene Set 0.001458 27 0.01114 145 REACTOME - RNA Pol II CTD phosphorylation and interaction with CE gene set www.pathwaycomm...
Null RNA Pol II CTD phosphorylation and interaction with CE - 11 View Gene Set 0.001458 27 0.01114 145 REACTOME - RNA Pol II CTD phosphorylation and interaction with CE - 11 gene set www.pathwaycomm...
Null Negative regulators of RIG-I/MDA5 signaling View Gene Set 0.00152 28 0.01147 148 REACTOME - Negative regulators of RIG-I/MDA5 signaling gene set www.pathwaycomm...
Null CDC6 association with the ORC:origin complex View Gene Set 0.001568 11 0.01175 149 REACTOME - CDC6 association with the ORC:origin complex gene set www.pathwaycomm...
Null Polymerase switching on the C-strand of the telomere View Gene Set 0.001661 14 0.0122 150 REACTOME - Polymerase switching on the C-strand of the telomere gene set www.pathwaycomm...
Null Polymerase switching View Gene Set 0.001661 14 0.0122 150 REACTOME - Polymerase switching gene set www.pathwaycomm...
Null Leading Strand Synthesis View Gene Set 0.001661 14 0.0122 150 REACTOME - Leading Strand Synthesis gene set www.pathwaycomm...
Null Endosomal Sorting Complex Required For Transport (ESCRT) View Gene Set 0.00186 28 0.01358 153 REACTOME - Endosomal Sorting Complex Required For Transport (ESCRT) gene set www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit View Gene Set 0.001959 106 0.01421 154 REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex in the absence of HIV-1 Tat View Gene Set 0.002033 42 0.01447 155 REACTOME - Formation of HIV-1 elongation complex in the absence of HIV-1 Tat gene set www.pathwaycomm...
Null Formation of RNA Pol II elongation complex View Gene Set 0.002033 42 0.01447 155 REACTOME - Formation of RNA Pol II elongation complex gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Elongation View Gene Set 0.002033 42 0.01447 155 REACTOME - RNA Polymerase II Transcription Elongation gene set www.pathwaycomm...
Null Hexose transport View Gene Set 0.002225 40 0.01573 158 REACTOME - Hexose transport gene set www.pathwaycomm...
Null Formation of tubulin folding intermediates by CCT/TriC View Gene Set 0.00235 8 0.01641 159 REACTOME - Formation of tubulin folding intermediates by CCT/TriC gene set www.pathwaycomm...
Null Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide LLO) and transfer to a nascent protein View Gene Set 0.002343 30 0.01641 159 REACTOME - Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide LLO) and transfer to a nascent protein gene set www.pathwaycomm... LLO) and transf...
Null Apoptosis View Gene Set 0.002487 148 0.01726 161 REACTOME - Apoptosis gene set www.pathwaycomm...
Null Prefoldin mediated transfer of substrate to CCT/TriC View Gene Set 0.002679 14 0.01847 162 REACTOME - Prefoldin mediated transfer of substrate to CCT/TriC gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex containing HIV-1 Tat View Gene Set 0.00276 41 0.01869 163 REACTOME - Formation of HIV-1 elongation complex containing HIV-1 Tat gene set www.pathwaycomm...
Null Tat-mediated elongation of the HIV-1 transcript View Gene Set 0.00276 41 0.01869 163 REACTOME - Tat-mediated elongation of the HIV-1 transcript gene set www.pathwaycomm...
Null HIV-1 Transcription Elongation View Gene Set 0.00276 41 0.01869 163 REACTOME - HIV-1 Transcription Elongation gene set www.pathwaycomm...
Null Formation of a pool of free 40S subunits View Gene Set 0.002928 95 0.0197 166 REACTOME - Formation of a pool of free 40S subunits gene set www.pathwaycomm...
Null Cytosolic tRNA aminoacylation View Gene Set 0.003023 24 0.02022 167 REACTOME - Cytosolic tRNA aminoacylation gene set www.pathwaycomm...
Null Mitochondrial tRNA aminoacylation View Gene Set 0.003102 21 0.02062 168 REACTOME - Mitochondrial tRNA aminoacylation gene set www.pathwaycomm...
Null Purine ribonucleoside monophosphate biosynthesis View Gene Set 0.003172 7 0.02096 169 REACTOME - Purine ribonucleoside monophosphate biosynthesis gene set www.pathwaycomm...
Null Deadenylation-dependent mRNA decay View Gene Set 0.003425 46 0.02251 170 REACTOME - Deadenylation-dependent mRNA decay gene set www.pathwaycomm...
Null Formation of incision complex in GG-NER View Gene Set 0.003609 22 0.02344 171 REACTOME - Formation of incision complex in GG-NER gene set www.pathwaycomm...
Null Dual incision reaction in GG-NER View Gene Set 0.003609 22 0.02344 171 REACTOME - Dual incision reaction in GG-NER gene set www.pathwaycomm...
Null RNA Polymerase I Transcription View Gene Set 0.003943 57 0.02546 173 REACTOME - RNA Polymerase I Transcription gene set www.pathwaycomm...
Null SLBP independent Processing of Histone Pre-mRNAs View Gene Set 0.004204 10 0.02683 174 REACTOME - SLBP independent Processing of Histone Pre-mRNAs gene set www.pathwaycomm...
Null Transport of nucleotide sugars View Gene Set 0.004188 8 0.02683 174 REACTOME - Transport of nucleotide sugars gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Clearance View Gene Set 0.004269 55 0.02709 176 REACTOME - RNA Polymerase I Promoter Clearance gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER View Gene Set 0.004423 16 0.02776 177 REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER View Gene Set 0.004423 16 0.02776 177 REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set www.pathwaycomm...
Null 3' -UTR-mediated translational regulation View Gene Set 0.004539 105 0.02817 179 REACTOME - 3' -UTR-mediated translational regulation gene set www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression View Gene Set 0.004539 105 0.02817 179 REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set www.pathwaycomm...
Null Phosphorylation of Emi1 View Gene Set 0.004783 12 0.02951 181 REACTOME - Phosphorylation of Emi1 gene set www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER View Gene Set 0.004855 15 0.02964 182 REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase View Gene Set 0.004855 15 0.02964 182 REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set www.pathwaycomm...
Null Association of licensing factors with the pre-replicative complex View Gene Set 0.005185 15 0.03148 184 REACTOME - Association of licensing factors with the pre-replicative complex gene set www.pathwaycomm...
Null Pyrimidine metabolism View Gene Set 0.005288 23 0.03193 185 REACTOME - Pyrimidine metabolism gene set www.pathwaycomm...
Null PERK regulated gene expression View Gene Set 0.005729 11 0.03441 186 REACTOME - PERK regulated gene expression gene set www.pathwaycomm...
Null Unwinding of DNA View Gene Set 0.005836 11 0.03486 187 REACTOME - Unwinding of DNA gene set www.pathwaycomm...
Null Pyrimidine biosynthesis View Gene Set 0.006058 6 0.036 188 REACTOME - Pyrimidine biosynthesis gene set www.pathwaycomm...
Null RNA Polymerase I Chain Elongation View Gene Set 0.006292 49 0.03718 189 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null Transcriptional Regulation of White Adipocyte Differentiation View Gene Set 0.006424 69 0.03777 190 REACTOME - Transcriptional Regulation of White Adipocyte Differentiation gene set www.pathwaycomm...
Null Meiotic Recombination View Gene Set 0.006643 42 0.03885 191 REACTOME - Meiotic Recombination gene set www.pathwaycomm...
Null Insulin Synthesis and Processing View Gene Set 0.006911 132 0.04021 192 REACTOME - Insulin Synthesis and Processing gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 0.007071 73 0.04071 193 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 0.00706 72 0.04071 193 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...
Null Formation of the ternary complex and subsequently the 43S complex View Gene Set 0.007252 49 0.04154 195 REACTOME - Formation of the ternary complex and subsequently the 43S complex gene set www.pathwaycomm... and subsequentl... the 43S complex...
Null Association of TriC/CCT with target proteins during biosynthesis View Gene Set 0.0085 9 0.04844 196 REACTOME - Association of TriC/CCT with target proteins during biosynthesis gene set www.pathwaycomm...
Null Synthesis Secretion and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) View Gene Set 0.008563 107 0.04856 197 REACTOME - Synthesis Secretion and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) gene set www.pathwaycomm... Secretion... and Inactivatio...
Null Metabolism of vitamins and cofactors View Gene Set 0.008717 53 0.04918 198 REACTOME - Metabolism of vitamins and cofactors gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-590-3p View Gene Set 2.899e-73 3575 1.963e-70 1 microRNA targets for hsa-miR-590-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548n View Gene Set 2.918e-60 3830 9.877e-58 2 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 5.558e-51 2925 1.254e-48 3 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 9.261e-48 3130 1.567e-45 4 microRNA targets for hsa-miR-548c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 9.733e-47 3175 1.318e-44 5 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548l View Gene Set 3.726e-44 2599 4.204e-42 6 microRNA targets for hsa-miR-548l from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 2.795e-43 2983 2.365e-41 7 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 2.594e-43 3270 2.365e-41 7 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548f View Gene Set 4.183e-43 2082 3.147e-41 9 microRNA targets for hsa-miR-548f from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 1.593e-42 2420 1.078e-40 10 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 3.468e-42 2909 2.134e-40 11 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 2.657e-40 2711 1.499e-38 12 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 1.643e-39 2860 8.554e-38 13 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-548e View Gene Set 1.902e-39 2325 9.196e-38 14 microRNA targets for hsa-miR-548e from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 3.047e-39 2539 1.375e-37 15 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 4.855e-39 2652 2.054e-37 16 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 5.254e-39 2900 2.092e-37 17 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 1.227e-35 2438 4.615e-34 18 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 6.525e-34 2681 2.325e-32 19 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-450b-5p View Gene Set 7.92e-34 2243 2.681e-32 20 microRNA targets for hsa-miR-450b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548o View Gene Set 8.933e-34 2216 2.88e-32 21 microRNA targets for hsa-miR-548o from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 5.144e-33 1511 1.583e-31 22 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 2.995e-32 2322 8.817e-31 23 microRNA targets for hsa-miR-607 from miranda.targets www.mirbase.org...
Null hsa-miR-548g View Gene Set 5.643e-32 2114 1.592e-30 24 microRNA targets for hsa-miR-548g from miranda.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 2.092e-31 2421 5.664e-30 25 microRNA targets for hsa-miR-586 from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 5.949e-31 1874 1.549e-29 26 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 6.982e-31 2504 1.751e-29 27 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-1323 View Gene Set 1.054e-30 2071 2.549e-29 28 microRNA targets for hsa-miR-1323 from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 2.226e-30 2745 5.198e-29 29 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 5.587e-30 1933 1.261e-28 30 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 7.485e-30 1414 1.635e-28 31 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 1.775e-29 3124 3.756e-28 32 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 1.853e-29 1858 3.801e-28 33 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 2.626e-29 2312 5.215e-28 34 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548m View Gene Set 2.696e-29 2295 5.215e-28 34 microRNA targets for hsa-miR-548m from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 7.345e-29 2065 1.381e-27 36 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 4.04e-28 2574 7.393e-27 37 microRNA targets for hsa-miR-524-5p from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 2.161e-27 1774 3.85e-26 38 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 8.877e-27 1802 1.541e-25 39 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 1.965e-26 2090 3.326e-25 40 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-548p View Gene Set 4.539e-26 2743 7.495e-25 41 microRNA targets for hsa-miR-548p from miranda.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 1.145e-25 1971 1.846e-24 42 microRNA targets for hsa-miR-582-5p from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 1.673e-24 2384 2.634e-23 43 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 5.618e-24 2324 8.643e-23 44 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-1244 View Gene Set 7.482e-24 2675 1.126e-22 45 microRNA targets for hsa-miR-1244 from miranda.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 1.041e-23 1019 1.532e-22 46 microRNA targets for hsa-miR-1297 from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 1.796e-23 2114 2.587e-22 47 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-1283 View Gene Set 6.164e-23 1960 8.693e-22 48 microRNA targets for hsa-miR-1283 from miranda.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 1.035e-22 1919 1.43e-21 49 microRNA targets for hsa-miR-452 from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 2.029e-22 1921 2.747e-21 50 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 3.038e-22 1767 4.033e-21 51 microRNA targets for hsa-miR-144 from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 9.088e-22 1707 1.183e-20 52 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 9.698e-22 1136 1.239e-20 53 microRNA targets for hsa-miR-491-3p from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 1.381e-21 1789 1.732e-20 54 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 1.897e-21 2061 2.335e-20 55 microRNA targets for hsa-miR-520d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 1.977e-21 1452 2.39e-20 56 microRNA targets for hsa-miR-633 from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 2.896e-21 1859 3.44e-20 57 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 8.899e-21 1794 1.039e-19 58 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 1.07e-20 2091 1.227e-19 59 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 1.148e-20 2210 1.295e-19 60 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 1.188e-20 2025 1.319e-19 61 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 2.585e-20 1449 2.823e-19 62 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 2.909e-20 1454 3.126e-19 63 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1259 View Gene Set 3.204e-20 1309 3.39e-19 64 microRNA targets for hsa-miR-1259 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 1.989e-19 2173 2.04e-18 65 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 1.989e-19 2173 2.04e-18 65 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 2.904e-19 2212 2.935e-18 67 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 3.251e-19 1886 3.236e-18 68 microRNA targets for hsa-miR-494 from miranda.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 4.023e-19 2056 3.947e-18 69 microRNA targets for hsa-miR-302d from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 6.019e-19 2295 5.821e-18 70 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 7.631e-19 2207 7.276e-18 71 microRNA targets for hsa-miR-580 from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 1.113e-18 1949 1.047e-17 72 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 1.381e-18 1792 1.281e-17 73 microRNA targets for hsa-miR-30e from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 1.483e-18 2246 1.357e-17 74 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 2.006e-18 1877 1.811e-17 75 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 2.147e-18 2122 1.912e-17 76 microRNA targets for hsa-miR-20b from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 2.841e-18 1844 2.498e-17 77 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 3.827e-18 1660 3.321e-17 78 microRNA targets for hsa-miR-448 from miranda.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 1.976e-17 2046 1.693e-16 79 microRNA targets for hsa-miR-302c from miranda.targets www.mirbase.org...
Null hsa-miR-1252 View Gene Set 2.415e-17 3125 2.044e-16 80 microRNA targets for hsa-miR-1252 from miranda.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 3.277e-17 1236 2.739e-16 81 microRNA targets for hsa-miR-361-5p from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 3.479e-17 1687 2.872e-16 82 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 5.028e-17 2011 4.101e-16 83 microRNA targets for hsa-miR-519c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 5.323e-17 1644 4.29e-16 84 microRNA targets for hsa-miR-300 from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 8.153e-17 2111 6.494e-16 85 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 1.22e-16 1180 9.602e-16 86 microRNA targets for hsa-miR-34b from miranda.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 1.356e-16 1946 1.055e-15 87 microRNA targets for hsa-miR-181a from miranda.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 2.336e-16 1500 1.797e-15 88 microRNA targets for hsa-miR-30d from miranda.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 2.466e-16 1792 1.875e-15 89 microRNA targets for hsa-miR-30c from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 2.632e-16 2072 1.98e-15 90 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 3.18e-16 1344 2.366e-15 91 microRNA targets for hsa-miR-223 from miranda.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 3.291e-16 1494 2.421e-15 92 microRNA targets for hsa-miR-576-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 3.54e-16 1611 2.577e-15 93 microRNA targets for hsa-miR-30a from miranda.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 7.85e-16 1840 5.654e-15 94 microRNA targets for hsa-miR-579 from miranda.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 9.294e-16 1773 6.623e-15 95 microRNA targets for hsa-miR-190 from miranda.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 9.872e-16 2061 6.962e-15 96 microRNA targets for hsa-miR-373 from miranda.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 1.135e-15 1842 7.924e-15 97 microRNA targets for hsa-miR-520c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 1.259e-15 1644 8.697e-15 98 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 1.615e-15 1695 1.105e-14 99 microRNA targets for hsa-miR-30b from miranda.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 2.76e-15 1638 1.868e-14 100 microRNA targets for hsa-miR-381 from miranda.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 3.065e-15 2077 2.055e-14 101 microRNA targets for hsa-miR-93 from miranda.targets www.mirbase.org...
Null hsa-miR-643 View Gene Set 3.339e-15 989 2.216e-14 102 microRNA targets for hsa-miR-643 from miranda.targets www.mirbase.org...
Null hsa-miR-543 View Gene Set 4.751e-15 1457 3.123e-14 103 microRNA targets for hsa-miR-543 from miranda.targets www.mirbase.org...
Null hsa-miR-1305 View Gene Set 5.064e-15 1619 3.296e-14 104 microRNA targets for hsa-miR-1305 from miranda.targets www.mirbase.org...
Null hsa-miR-1284 View Gene Set 6.257e-15 1108 4.035e-14 105 microRNA targets for hsa-miR-1284 from miranda.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 7.898e-15 1700 5.044e-14 106 microRNA targets for hsa-miR-520b from miranda.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 8.307e-15 1773 5.256e-14 107 microRNA targets for hsa-miR-141 from miranda.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 9.783e-15 1044 6.132e-14 108 microRNA targets for hsa-miR-496 from miranda.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 9.956e-15 1832 6.159e-14 109 microRNA targets for hsa-miR-372 from miranda.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 1.001e-14 1101 6.159e-14 109 microRNA targets for hsa-miR-410 from miranda.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 1.041e-14 1040 6.347e-14 111 microRNA targets for hsa-miR-606 from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 1.237e-14 1682 7.48e-14 112 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 1.273e-14 1793 7.625e-14 113 microRNA targets for hsa-miR-495 from miranda.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 1.296e-14 2054 7.695e-14 114 microRNA targets for hsa-miR-302a from miranda.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 1.701e-14 1837 1.002e-13 115 microRNA targets for hsa-miR-519a from miranda.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 1.782e-14 2308 1.036e-13 116 microRNA targets for hsa-miR-539 from miranda.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 1.79e-14 1379 1.036e-13 116 microRNA targets for hsa-miR-888 from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 2.088e-14 2118 1.198e-13 118 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 2.789e-14 1217 1.587e-13 119 microRNA targets for hsa-miR-582-3p from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 3.934e-14 2189 2.219e-13 120 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 4.025e-14 1331 2.252e-13 121 microRNA targets for hsa-miR-155 from miranda.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 5.354e-14 1272 2.971e-13 122 microRNA targets for hsa-miR-101 from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 1.421e-13 1804 7.822e-13 123 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-1278 View Gene Set 1.724e-13 1219 9.414e-13 124 microRNA targets for hsa-miR-1278 from miranda.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 2.649e-13 1199 1.435e-12 125 microRNA targets for hsa-miR-376a from miranda.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 5.998e-13 1728 3.223e-12 126 microRNA targets for hsa-miR-520e from miranda.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 8.182e-13 1416 4.361e-12 127 microRNA targets for hsa-miR-216b from miranda.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 8.516e-13 2140 4.504e-12 128 microRNA targets for hsa-miR-520g from miranda.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 9.494e-13 1316 4.982e-12 129 microRNA targets for hsa-miR-217 from miranda.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 1.607e-12 1429 8.369e-12 130 microRNA targets for hsa-miR-376c from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 1.908e-12 1858 9.859e-12 131 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-302e View Gene Set 1.973e-12 1203 1.012e-11 132 microRNA targets for hsa-miR-302e from miranda.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 2.017e-12 1309 1.027e-11 133 microRNA targets for hsa-miR-499-5p from miranda.targets www.mirbase.org...
Null hsa-miR-651 View Gene Set 2.264e-12 1234 1.144e-11 134 microRNA targets for hsa-miR-651 from miranda.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 2.325e-12 2017 1.166e-11 135 microRNA targets for hsa-miR-19b from miranda.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 2.915e-12 1357 1.451e-11 136 microRNA targets for hsa-miR-376b from miranda.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 3.266e-12 937 1.614e-11 137 microRNA targets for hsa-miR-323-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 3.756e-12 1772 1.843e-11 138 microRNA targets for hsa-miR-1 from miranda.targets www.mirbase.org...
Null hsa-miR-573 View Gene Set 4.994e-12 2023 2.432e-11 139 microRNA targets for hsa-miR-573 from miranda.targets www.mirbase.org...
Null hsa-miR-505 View Gene Set 5.045e-12 1120 2.44e-11 140 microRNA targets for hsa-miR-505 from miranda.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 5.164e-12 932 2.479e-11 141 microRNA targets for hsa-miR-628-3p from miranda.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 6.026e-12 1641 2.873e-11 142 microRNA targets for hsa-miR-382 from miranda.targets www.mirbase.org...
Null hsa-miR-1272 View Gene Set 6.424e-12 1955 3.041e-11 143 microRNA targets for hsa-miR-1272 from miranda.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 7.312e-12 1631 3.437e-11 144 microRNA targets for hsa-miR-335 from miranda.targets www.mirbase.org...
Null hsa-miR-653 View Gene Set 8.664e-12 1411 4.045e-11 145 microRNA targets for hsa-miR-653 from miranda.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 8.801e-12 1053 4.081e-11 146 microRNA targets for hsa-miR-21 from miranda.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 1.007e-11 1590 4.637e-11 147 microRNA targets for hsa-miR-520a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 1.032e-11 1646 4.721e-11 148 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-618 View Gene Set 1.04e-11 1083 4.727e-11 149 microRNA targets for hsa-miR-618 from miranda.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 1.069e-11 1713 4.825e-11 150 microRNA targets for hsa-miR-377 from miranda.targets www.mirbase.org...
Null hsa-miR-556-5p View Gene Set 1.142e-11 1236 5.12e-11 151 microRNA targets for hsa-miR-556-5p from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 1.358e-11 1861 6.046e-11 152 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 1.848e-11 2008 8.177e-11 153 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 2.934e-11 1013 1.29e-10 154 microRNA targets for hsa-miR-569 from miranda.targets www.mirbase.org...
Null hsa-miR-137 View Gene Set 3.154e-11 1442 1.378e-10 155 microRNA targets for hsa-miR-137 from miranda.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 3.55e-11 1144 1.54e-10 156 microRNA targets for hsa-miR-194 from miranda.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 4.255e-11 1901 1.835e-10 157 microRNA targets for hsa-miR-520d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-500 View Gene Set 4.577e-11 1378 1.961e-10 158 microRNA targets for hsa-miR-500 from miranda.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 4.688e-11 1524 1.996e-10 159 microRNA targets for hsa-miR-587 from miranda.targets www.mirbase.org...
Null hsa-miR-32 View Gene Set 6.235e-11 1319 2.638e-10 160 microRNA targets for hsa-miR-32 from miranda.targets www.mirbase.org...
Null hsa-miR-1206 View Gene Set 6.666e-11 1455 2.803e-10 161 microRNA targets for hsa-miR-1206 from miranda.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 7.074e-11 1629 2.956e-10 162 microRNA targets for hsa-miR-421 from miranda.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 8.227e-11 1930 3.404e-10 163 microRNA targets for hsa-miR-182 from miranda.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 8.246e-11 1786 3.404e-10 163 microRNA targets for hsa-miR-519b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-876-5p View Gene Set 1.042e-10 1699 4.273e-10 165 microRNA targets for hsa-miR-876-5p from miranda.targets www.mirbase.org...
Null hsa-miR-513b View Gene Set 1.331e-10 1603 5.428e-10 166 microRNA targets for hsa-miR-513b from miranda.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 1.489e-10 1619 6.037e-10 167 microRNA targets for hsa-miR-200a from miranda.targets www.mirbase.org...
Null hsa-miR-624 View Gene Set 2.727e-10 1486 1.099e-09 168 microRNA targets for hsa-miR-624 from miranda.targets www.mirbase.org...
Null hsa-miR-363 View Gene Set 3.015e-10 1039 1.208e-09 169 microRNA targets for hsa-miR-363 from miranda.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 6.358e-10 1169 2.532e-09 170 microRNA targets for hsa-miR-142-3p from miranda.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 7.224e-10 873 2.86e-09 171 microRNA targets for hsa-miR-889 from miranda.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 8.172e-10 1229 3.217e-09 172 microRNA targets for hsa-miR-485-3p from miranda.targets www.mirbase.org...
Null hsa-miR-508-3p View Gene Set 9.519e-10 1088 3.725e-09 173 microRNA targets for hsa-miR-508-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1826 View Gene Set 9.6e-10 1313 3.735e-09 174 microRNA targets for hsa-miR-1826 from miranda.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 1.286e-09 1282 4.976e-09 175 microRNA targets for hsa-miR-409-3p from miranda.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 1.476e-09 1232 5.646e-09 176 microRNA targets for hsa-miR-199a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-199b-3p View Gene Set 1.476e-09 1232 5.646e-09 176 microRNA targets for hsa-miR-199b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 1.71e-09 1821 6.502e-09 178 microRNA targets for hsa-miR-515-5p from miranda.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 2.248e-09 1206 8.504e-09 179 microRNA targets for hsa-miR-590-5p from miranda.targets www.mirbase.org...
Null hsa-miR-367 View Gene Set 2.512e-09 1270 9.447e-09 180 microRNA targets for hsa-miR-367 from miranda.targets www.mirbase.org...
Null hsa-miR-129-5p View Gene Set 2.794e-09 1724 1.045e-08 181 microRNA targets for hsa-miR-129-5p from miranda.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 3.088e-09 943 1.149e-08 182 microRNA targets for hsa-miR-935 from miranda.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 3.169e-09 1131 1.172e-08 183 microRNA targets for hsa-miR-219-2-3p from miranda.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 3.264e-09 1451 1.201e-08 184 microRNA targets for hsa-miR-152 from miranda.targets www.mirbase.org...
Null hsa-miR-556-3p View Gene Set 3.553e-09 822 1.3e-08 185 microRNA targets for hsa-miR-556-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1243 View Gene Set 3.929e-09 1196 1.43e-08 186 microRNA targets for hsa-miR-1243 from miranda.targets www.mirbase.org...
Null hsa-miR-1183 View Gene Set 4.461e-09 2417 1.615e-08 187 microRNA targets for hsa-miR-1183 from miranda.targets www.mirbase.org...
Null hsa-miR-337-3p View Gene Set 5.609e-09 876 2.02e-08 188 microRNA targets for hsa-miR-337-3p from miranda.targets www.mirbase.org...
Null hsa-miR-331-5p View Gene Set 6.397e-09 815 2.291e-08 189 microRNA targets for hsa-miR-331-5p from miranda.targets www.mirbase.org...
Null hsa-miR-151-3p View Gene Set 6.432e-09 785 2.292e-08 190 microRNA targets for hsa-miR-151-3p from miranda.targets www.mirbase.org...
Null hsa-miR-33a View Gene Set 8.394e-09 1258 2.975e-08 191 microRNA targets for hsa-miR-33a from miranda.targets www.mirbase.org...
Null hsa-miR-136 View Gene Set 8.972e-09 2134 3.164e-08 192 microRNA targets for hsa-miR-136 from miranda.targets www.mirbase.org...
Null hsa-miR-196a View Gene Set 1.015e-08 1412 3.56e-08 193 microRNA targets for hsa-miR-196a from miranda.targets www.mirbase.org...
Null hsa-miR-1261 View Gene Set 1.09e-08 979 3.804e-08 194 microRNA targets for hsa-miR-1261 from miranda.targets www.mirbase.org...
Null hsa-miR-875-3p View Gene Set 1.118e-08 2002 3.882e-08 195 microRNA targets for hsa-miR-875-3p from miranda.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 1.165e-08 1491 4.023e-08 196 microRNA targets for hsa-miR-148b from miranda.targets www.mirbase.org...
Null hsa-miR-520f View Gene Set 1.267e-08 1654 4.353e-08 197 microRNA targets for hsa-miR-520f from miranda.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 1.538e-08 1605 5.257e-08 198 microRNA targets for hsa-miR-206 from miranda.targets www.mirbase.org...
Null hsa-miR-190b View Gene Set 1.58e-08 1281 5.375e-08 199 microRNA targets for hsa-miR-190b from miranda.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 2.072e-08 865 7.012e-08 200 microRNA targets for hsa-miR-487a from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548c-3p View Gene Set 2.27e-19 863 1.614e-16 1 microRNA targets for hsa-miR-548c-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 3.141e-18 763 1.117e-15 2 microRNA targets for hsa-miR-548a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 6.057e-18 818 1.435e-15 3 microRNA targets for hsa-miR-548b-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7f-1* View Gene Set 1.903e-17 751 2.994e-15 4 microRNA targets for hsa-let-7f-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 2.106e-17 795 2.994e-15 4 microRNA targets for hsa-miR-548d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 1.741e-16 649 2.063e-14 6 microRNA targets for hsa-miR-568 from mirbase.targets www.mirbase.org...
Null hsa-let-7a* View Gene Set 2.989e-16 772 3.036e-14 7 microRNA targets for hsa-let-7a* from mirbase.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 8.241e-16 796 7.324e-14 8 microRNA targets for hsa-miR-144 from mirbase.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 2.764e-15 814 2.183e-13 9 microRNA targets for hsa-miR-338-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 9.398e-15 651 6.682e-13 10 microRNA targets for hsa-miR-561 from mirbase.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 1.757e-14 742 1.135e-12 11 microRNA targets for hsa-miR-590-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 2.059e-14 899 1.22e-12 12 microRNA targets for hsa-miR-548a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 5.597e-14 854 3.061e-12 13 microRNA targets for hsa-miR-200b from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 1.445e-13 801 7.339e-12 14 microRNA targets for hsa-miR-548c-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 1.774e-13 871 8.41e-12 15 microRNA targets for hsa-miR-200c from mirbase.targets www.mirbase.org...
Null hsa-let-7b* View Gene Set 4.536e-13 772 2.016e-11 16 microRNA targets for hsa-let-7b* from mirbase.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 1.675e-12 574 7.005e-11 17 microRNA targets for hsa-miR-374b from mirbase.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 2.48e-11 548 9.797e-10 18 microRNA targets for hsa-miR-374a from mirbase.targets www.mirbase.org...
Null hsa-miR-302c* View Gene Set 7.82e-11 615 2.78e-09 19 microRNA targets for hsa-miR-302c* from mirbase.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 7.678e-11 750 2.78e-09 19 microRNA targets for hsa-miR-369-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 9.925e-11 696 3.36e-09 21 microRNA targets for hsa-miR-26b from mirbase.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 1.387e-10 779 4.483e-09 22 microRNA targets for hsa-miR-376b from mirbase.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 2.065e-10 661 6.385e-09 23 microRNA targets for hsa-miR-142-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 5.799e-10 570 1.718e-08 24 microRNA targets for hsa-miR-9* from mirbase.targets www.mirbase.org...
Null hsa-miR-302d* View Gene Set 6.676e-10 693 1.899e-08 25 microRNA targets for hsa-miR-302d* from mirbase.targets www.mirbase.org...
Null hsa-let-7d* View Gene Set 7.302e-10 781 1.997e-08 26 microRNA targets for hsa-let-7d* from mirbase.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 7.891e-10 793 2.078e-08 27 microRNA targets for hsa-miR-429 from mirbase.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 8.335e-10 596 2.116e-08 28 microRNA targets for hsa-miR-606 from mirbase.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 1.158e-09 463 2.744e-08 29 microRNA targets for hsa-miR-559 from mirbase.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 1.144e-09 514 2.744e-08 29 microRNA targets for hsa-miR-656 from mirbase.targets www.mirbase.org...
Null hsa-miR-7-1* View Gene Set 1.894e-09 524 4.343e-08 31 microRNA targets for hsa-miR-7-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 2.232e-09 718 4.86e-08 32 microRNA targets for hsa-miR-26a from mirbase.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 2.324e-09 729 4.86e-08 32 microRNA targets for hsa-miR-452 from mirbase.targets www.mirbase.org...
Null hsa-miR-7-2* View Gene Set 2.289e-09 531 4.86e-08 32 microRNA targets for hsa-miR-7-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 3.792e-09 568 7.702e-08 35 microRNA targets for hsa-miR-633 from mirbase.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 3.965e-09 807 7.831e-08 36 microRNA targets for hsa-miR-130a from mirbase.targets www.mirbase.org...
Null hsa-miR-411* View Gene Set 4.602e-09 541 8.844e-08 37 microRNA targets for hsa-miR-411* from mirbase.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 5.793e-09 654 1.084e-07 38 microRNA targets for hsa-miR-655 from mirbase.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 8.412e-09 761 1.534e-07 39 microRNA targets for hsa-miR-499-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 9.424e-09 978 1.675e-07 40 microRNA targets for hsa-miR-548d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 1.056e-08 581 1.831e-07 41 microRNA targets for hsa-miR-380 from mirbase.targets www.mirbase.org...
Null hsa-miR-379* View Gene Set 1.12e-08 511 1.897e-07 42 microRNA targets for hsa-miR-379* from mirbase.targets www.mirbase.org...
Null hsa-let-7f-2* View Gene Set 1.325e-08 820 2.191e-07 43 microRNA targets for hsa-let-7f-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 1.764e-08 567 2.85e-07 44 microRNA targets for hsa-miR-944 from mirbase.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 1.823e-08 581 2.88e-07 45 microRNA targets for hsa-miR-340 from mirbase.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 2.066e-08 818 3.193e-07 46 microRNA targets for hsa-miR-101 from mirbase.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 2.394e-08 769 3.611e-07 47 microRNA targets for hsa-miR-454 from mirbase.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 2.438e-08 704 3.611e-07 47 microRNA targets for hsa-miR-513-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 2.595e-08 746 3.765e-07 49 microRNA targets for hsa-miR-376a from mirbase.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 2.878e-08 770 4.093e-07 50 microRNA targets for hsa-miR-768-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-126* View Gene Set 3.438e-08 549 4.792e-07 51 microRNA targets for hsa-miR-126* from mirbase.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 3.552e-08 796 4.857e-07 52 microRNA targets for hsa-miR-495 from mirbase.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 3.748e-08 763 5.027e-07 53 microRNA targets for hsa-miR-301b from mirbase.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 5.112e-08 668 6.608e-07 54 microRNA targets for hsa-miR-190 from mirbase.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 5.03e-08 665 6.608e-07 54 microRNA targets for hsa-miR-522 from mirbase.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 7.842e-08 799 9.951e-07 56 microRNA targets for hsa-miR-30c from mirbase.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 7.978e-08 643 9.951e-07 56 microRNA targets for hsa-miR-381 from mirbase.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 1.082e-07 727 1.326e-06 58 microRNA targets for hsa-miR-223 from mirbase.targets www.mirbase.org...
Null hsa-miR-101* View Gene Set 1.272e-07 605 1.533e-06 59 microRNA targets for hsa-miR-101* from mirbase.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 1.395e-07 683 1.654e-06 60 microRNA targets for hsa-miR-802 from mirbase.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 1.55e-07 807 1.806e-06 61 microRNA targets for hsa-miR-30b from mirbase.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 1.674e-07 650 1.92e-06 62 microRNA targets for hsa-miR-889 from mirbase.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 1.723e-07 908 1.944e-06 63 microRNA targets for hsa-miR-200a from mirbase.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 1.834e-07 798 2.037e-06 64 microRNA targets for hsa-miR-301a from mirbase.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 2.487e-07 672 2.72e-06 65 microRNA targets for hsa-miR-300 from mirbase.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 2.797e-07 665 3.013e-06 66 microRNA targets for hsa-miR-217 from mirbase.targets www.mirbase.org...
Null hsa-miR-219-5p View Gene Set 3.114e-07 816 3.183e-06 67 microRNA targets for hsa-miR-219-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-302a* View Gene Set 3.125e-07 644 3.183e-06 67 microRNA targets for hsa-miR-302a* from mirbase.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 3.091e-07 770 3.183e-06 67 microRNA targets for hsa-miR-30d from mirbase.targets www.mirbase.org...
Null hsa-miR-450a View Gene Set 3.134e-07 787 3.183e-06 67 microRNA targets for hsa-miR-450a from mirbase.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 3.206e-07 803 3.211e-06 71 microRNA targets for hsa-miR-19a from mirbase.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 3.442e-07 821 3.399e-06 72 microRNA targets for hsa-miR-582-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 3.509e-07 659 3.417e-06 73 microRNA targets for hsa-miR-1 from mirbase.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 3.64e-07 452 3.497e-06 74 microRNA targets for hsa-miR-577 from mirbase.targets www.mirbase.org...
Null hsa-miR-450b-5p View Gene Set 3.751e-07 732 3.556e-06 75 microRNA targets for hsa-miR-450b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 3.845e-07 628 3.597e-06 76 microRNA targets for hsa-miR-203 from mirbase.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 4.802e-07 812 4.322e-06 77 microRNA targets for hsa-miR-141 from mirbase.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 4.753e-07 689 4.322e-06 77 microRNA targets for hsa-miR-487a from mirbase.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 4.704e-07 640 4.322e-06 77 microRNA targets for hsa-miR-496 from mirbase.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 9.006e-07 530 8.004e-06 80 microRNA targets for hsa-miR-580 from mirbase.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 9.147e-07 660 8.029e-06 81 microRNA targets for hsa-miR-448 from mirbase.targets www.mirbase.org...
Null hsa-miR-493* View Gene Set 1.101e-06 522 9.508e-06 82 microRNA targets for hsa-miR-493* from mirbase.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 1.11e-06 625 9.508e-06 82 microRNA targets for hsa-miR-569 from mirbase.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 1.131e-06 713 9.573e-06 84 microRNA targets for hsa-miR-576-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-302b* View Gene Set 1.332e-06 683 1.114e-05 85 microRNA targets for hsa-miR-302b* from mirbase.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 1.39e-06 964 1.149e-05 86 microRNA targets for hsa-miR-519a from mirbase.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 1.708e-06 842 1.396e-05 87 microRNA targets for hsa-miR-181a from mirbase.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 2.059e-06 837 1.664e-05 88 microRNA targets for hsa-miR-590-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 2.096e-06 637 1.674e-05 89 microRNA targets for hsa-miR-494 from mirbase.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 2.5e-06 864 1.975e-05 90 microRNA targets for hsa-miR-181d from mirbase.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 2.888e-06 603 2.256e-05 91 microRNA targets for hsa-miR-570 from mirbase.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 2.973e-06 756 2.298e-05 92 microRNA targets for hsa-miR-142-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 3.782e-06 755 2.891e-05 93 microRNA targets for hsa-miR-891b from mirbase.targets www.mirbase.org...
Null hsa-miR-195* View Gene Set 3.846e-06 446 2.909e-05 94 microRNA targets for hsa-miR-195* from mirbase.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 3.945e-06 767 2.953e-05 95 microRNA targets for hsa-miR-30a from mirbase.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 4.456e-06 874 3.3e-05 96 microRNA targets for hsa-miR-181b from mirbase.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 4.985e-06 763 3.654e-05 97 microRNA targets for hsa-miR-376c from mirbase.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 6.086e-06 767 4.415e-05 98 microRNA targets for hsa-miR-491-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-562 View Gene Set 6.272e-06 697 4.505e-05 99 microRNA targets for hsa-miR-562 from mirbase.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 6.73e-06 773 4.785e-05 100 microRNA targets for hsa-miR-30e from mirbase.targets www.mirbase.org...
Null hsa-miR-32* View Gene Set 6.843e-06 384 4.817e-05 101 microRNA targets for hsa-miR-32* from mirbase.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 7.589e-06 614 5.29e-05 102 microRNA targets for hsa-miR-410 from mirbase.targets www.mirbase.org...
Null hsa-miR-190b View Gene Set 7.762e-06 666 5.358e-05 103 microRNA targets for hsa-miR-190b from mirbase.targets www.mirbase.org...
Null hsa-miR-374a* View Gene Set 8.159e-06 491 5.578e-05 104 microRNA targets for hsa-miR-374a* from mirbase.targets www.mirbase.org...
Null hsa-miR-451 View Gene Set 8.439e-06 766 5.715e-05 105 microRNA targets for hsa-miR-451 from mirbase.targets www.mirbase.org...
Null hsa-miR-549 View Gene Set 8.699e-06 718 5.835e-05 106 microRNA targets for hsa-miR-549 from mirbase.targets www.mirbase.org...
Null hsa-miR-10a* View Gene Set 9.582e-06 585 6.367e-05 107 microRNA targets for hsa-miR-10a* from mirbase.targets www.mirbase.org...
Null hsa-miR-651 View Gene Set 9.811e-06 676 6.459e-05 108 microRNA targets for hsa-miR-651 from mirbase.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 1.614e-05 740 0.0001053 109 microRNA targets for hsa-miR-155 from mirbase.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 1.646e-05 719 0.0001064 110 microRNA targets for hsa-miR-105 from mirbase.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 1.812e-05 745 0.0001161 111 microRNA targets for hsa-miR-216b from mirbase.targets www.mirbase.org...
Null hsa-miR-16-2* View Gene Set 2.026e-05 507 0.0001286 112 microRNA targets for hsa-miR-16-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 2.124e-05 855 0.0001337 113 microRNA targets for hsa-miR-181c from mirbase.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 2.257e-05 761 0.0001408 114 microRNA targets for hsa-miR-545 from mirbase.targets www.mirbase.org...
Null hsa-miR-32 View Gene Set 2.543e-05 653 0.0001572 115 microRNA targets for hsa-miR-32 from mirbase.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 2.626e-05 958 0.000161 116 microRNA targets for hsa-miR-519c-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 3.227e-05 809 0.0001961 117 microRNA targets for hsa-miR-130b from mirbase.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 3.662e-05 699 0.0002206 118 microRNA targets for hsa-miR-888 from mirbase.targets www.mirbase.org...
Null hsa-miR-616* View Gene Set 4.196e-05 533 0.0002507 119 microRNA targets for hsa-miR-616* from mirbase.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 4.496e-05 654 0.0002664 120 microRNA targets for hsa-miR-409-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 4.653e-05 589 0.0002734 121 microRNA targets for hsa-miR-186 from mirbase.targets www.mirbase.org...
Null hsa-miR-508-3p View Gene Set 4.806e-05 690 0.0002801 122 microRNA targets for hsa-miR-508-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-15b* View Gene Set 6.13e-05 587 0.0003544 123 microRNA targets for hsa-miR-15b* from mirbase.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 7.184e-05 618 0.0004119 124 microRNA targets for hsa-miR-567 from mirbase.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 7.358e-05 957 0.0004185 125 microRNA targets for hsa-miR-519b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 7.879e-05 807 0.0004446 126 microRNA targets for hsa-miR-23a from mirbase.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 8.25e-05 709 0.0004619 127 microRNA targets for hsa-miR-191 from mirbase.targets www.mirbase.org...
Null hsa-miR-200b* View Gene Set 8.499e-05 660 0.0004721 128 microRNA targets for hsa-miR-200b* from mirbase.targets www.mirbase.org...
Null hsa-miR-708* View Gene Set 8.688e-05 568 0.0004788 129 microRNA targets for hsa-miR-708* from mirbase.targets www.mirbase.org...
Null hsa-miR-553 View Gene Set 9.402e-05 672 0.0005142 130 microRNA targets for hsa-miR-553 from mirbase.targets www.mirbase.org...
Null hsa-miR-545* View Gene Set 0.0001001 518 0.0005435 131 microRNA targets for hsa-miR-545* from mirbase.targets www.mirbase.org...
Null hsa-miR-592 View Gene Set 0.0001009 658 0.0005435 131 microRNA targets for hsa-miR-592 from mirbase.targets www.mirbase.org...
Null hsa-miR-208 View Gene Set 0.0001068 664 0.0005712 133 microRNA targets for hsa-miR-208 from mirbase.targets www.mirbase.org...
Null hsa-miR-19a* View Gene Set 0.0001107 536 0.0005831 134 microRNA targets for hsa-miR-19a* from mirbase.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 0.0001107 729 0.0005831 134 microRNA targets for hsa-miR-335 from mirbase.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 0.0001386 759 0.0007246 136 microRNA targets for hsa-miR-582-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 0.0001405 721 0.0007292 137 microRNA targets for hsa-miR-586 from mirbase.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.0001507 789 0.0007763 138 microRNA targets for hsa-miR-19b from mirbase.targets www.mirbase.org...
Null hsa-miR-33a* View Gene Set 0.0001646 530 0.0008418 139 microRNA targets for hsa-miR-33a* from mirbase.targets www.mirbase.org...
Null hsa-miR-144* View Gene Set 0.0001791 446 0.0009096 140 microRNA targets for hsa-miR-144* from mirbase.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.0001951 739 0.0009839 141 microRNA targets for hsa-miR-587 from mirbase.targets www.mirbase.org...
Null hsa-miR-551b* View Gene Set 0.0002043 473 0.001023 142 microRNA targets for hsa-miR-551b* from mirbase.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 0.0002186 705 0.001087 143 microRNA targets for hsa-miR-628-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-106a* View Gene Set 0.0002327 554 0.001149 144 microRNA targets for hsa-miR-106a* from mirbase.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.0002379 772 0.001166 145 microRNA targets for hsa-miR-23b from mirbase.targets www.mirbase.org...
Null hsa-miR-154 View Gene Set 0.0002477 649 0.001202 146 microRNA targets for hsa-miR-154 from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-3p View Gene Set 0.0002486 970 0.001202 146 microRNA targets for hsa-miR-548b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.0002626 776 0.001261 148 microRNA targets for hsa-miR-34b from mirbase.targets www.mirbase.org...
Null hsa-miR-556-3p View Gene Set 0.0002668 806 0.001273 149 microRNA targets for hsa-miR-556-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 0.0003166 789 0.001501 150 microRNA targets for hsa-miR-199a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-507 View Gene Set 0.0003312 721 0.001559 151 microRNA targets for hsa-miR-507 from mirbase.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.000382 696 0.001787 152 microRNA targets for hsa-miR-219-2-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-154* View Gene Set 0.0003925 516 0.001812 153 microRNA targets for hsa-miR-154* from mirbase.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.0003917 629 0.001812 153 microRNA targets for hsa-miR-641 from mirbase.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.000414 779 0.001899 155 microRNA targets for hsa-miR-519d from mirbase.targets www.mirbase.org...
Null hsa-miR-95 View Gene Set 0.0004677 787 0.002131 156 microRNA targets for hsa-miR-95 from mirbase.targets www.mirbase.org...
Null hsa-miR-215 View Gene Set 0.0005482 724 0.002483 157 microRNA targets for hsa-miR-215 from mirbase.targets www.mirbase.org...
Null hsa-miR-16-1* View Gene Set 0.0005551 557 0.002498 158 microRNA targets for hsa-miR-16-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 0.0005634 756 0.002519 159 microRNA targets for hsa-miR-323-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-200a* View Gene Set 0.0006683 623 0.00297 160 microRNA targets for hsa-miR-200a* from mirbase.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.0006831 707 0.003017 161 microRNA targets for hsa-miR-871 from mirbase.targets www.mirbase.org...
Null hsa-miR-649 View Gene Set 0.0007264 712 0.003188 162 microRNA targets for hsa-miR-649 from mirbase.targets www.mirbase.org...
Null hsa-miR-30d* View Gene Set 0.0007436 717 0.003243 163 microRNA targets for hsa-miR-30d* from mirbase.targets www.mirbase.org...
Null hsa-miR-628-5p View Gene Set 0.0007581 829 0.003287 164 microRNA targets for hsa-miR-628-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-643 View Gene Set 0.0007675 639 0.003307 165 microRNA targets for hsa-miR-643 from mirbase.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 0.00079 620 0.003384 166 microRNA targets for hsa-miR-607 from mirbase.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.0008056 539 0.00343 167 microRNA targets for hsa-miR-539 from mirbase.targets www.mirbase.org...
Null hsa-miR-136* View Gene Set 0.000966 557 0.004088 168 microRNA targets for hsa-miR-136* from mirbase.targets www.mirbase.org...
Null hsa-miR-20a* View Gene Set 0.001088 613 0.004577 169 microRNA targets for hsa-miR-20a* from mirbase.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.001151 872 0.004786 170 microRNA targets for hsa-miR-106b from mirbase.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 0.001146 726 0.004786 170 microRNA targets for hsa-miR-224 from mirbase.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.001166 708 0.004819 172 microRNA targets for hsa-miR-524-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-137 View Gene Set 0.001214 775 0.00499 173 microRNA targets for hsa-miR-137 from mirbase.targets www.mirbase.org...
Null hsa-miR-543 View Gene Set 0.001246 760 0.00509 174 microRNA targets for hsa-miR-543 from mirbase.targets www.mirbase.org...
Null hsa-let-7c* View Gene Set 0.001384 755 0.005623 175 microRNA targets for hsa-let-7c* from mirbase.targets www.mirbase.org...
Null hsa-miR-653 View Gene Set 0.00148 580 0.005981 176 microRNA targets for hsa-miR-653 from mirbase.targets www.mirbase.org...
Null hsa-miR-183* View Gene Set 0.001498 495 0.006018 177 microRNA targets for hsa-miR-183* from mirbase.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.001745 677 0.006968 178 microRNA targets for hsa-miR-361-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-625* View Gene Set 0.001775 455 0.007049 179 microRNA targets for hsa-miR-625* from mirbase.targets www.mirbase.org...
Null hsa-let-7e* View Gene Set 0.001796 790 0.007057 180 microRNA targets for hsa-let-7e* from mirbase.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.001796 736 0.007057 180 microRNA targets for hsa-miR-377 from mirbase.targets www.mirbase.org...
Null hsa-miR-196a View Gene Set 0.001858 808 0.007221 182 microRNA targets for hsa-miR-196a from mirbase.targets www.mirbase.org...
Null hsa-miR-28-3p View Gene Set 0.001854 712 0.007221 182 microRNA targets for hsa-miR-28-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.001872 842 0.007235 184 microRNA targets for hsa-miR-520a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-374b* View Gene Set 0.002098 604 0.008062 185 microRNA targets for hsa-miR-374b* from mirbase.targets www.mirbase.org...
Null hsa-miR-130a* View Gene Set 0.002137 606 0.008169 186 microRNA targets for hsa-miR-130a* from mirbase.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.00219 745 0.008325 187 microRNA targets for hsa-miR-153 from mirbase.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.002273 832 0.008596 188 microRNA targets for hsa-miR-520d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-556-5p View Gene Set 0.002654 739 0.009986 189 microRNA targets for hsa-miR-556-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 0.002851 690 0.01067 190 microRNA targets for hsa-miR-146b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-433 View Gene Set 0.00335 731 0.01247 191 microRNA targets for hsa-miR-433 from mirbase.targets www.mirbase.org...
Null hsa-miR-411 View Gene Set 0.003747 696 0.01388 192 microRNA targets for hsa-miR-411 from mirbase.targets www.mirbase.org...
Null hsa-miR-487b View Gene Set 0.003811 670 0.01404 193 microRNA targets for hsa-miR-487b from mirbase.targets www.mirbase.org...
Null hsa-miR-208b View Gene Set 0.00504 678 0.01847 194 microRNA targets for hsa-miR-208b from mirbase.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 0.005115 795 0.01865 195 microRNA targets for hsa-miR-337-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-573 View Gene Set 0.005174 696 0.01877 196 microRNA targets for hsa-miR-573 from mirbase.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.005529 717 0.01994 197 microRNA targets for hsa-miR-146a from mirbase.targets www.mirbase.org...
Null hsa-miR-630 View Gene Set 0.005554 702 0.01994 197 microRNA targets for hsa-miR-630 from mirbase.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.006963 714 0.02488 199 microRNA targets for hsa-miR-382 from mirbase.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 0.00735 776 0.02613 200 microRNA targets for hsa-miR-520g from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-590-3p View Gene Set 4.149e-50 2046 2.294e-47 1 microRNA targets for hsa-miR-590-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 3.313e-35 1804 9.16e-33 2 microRNA targets for hsa-miR-548c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 6.27e-33 1119 1.156e-30 3 microRNA targets for hsa-miR-513-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 4.052e-30 1157 5.602e-28 4 microRNA targets for hsa-miR-548b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 1.217e-29 1137 1.346e-27 5 microRNA targets for hsa-miR-607 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 2.889e-28 1120 2.634e-26 6 microRNA targets for hsa-miR-548a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 3.334e-28 1151 2.634e-26 6 microRNA targets for hsa-miR-548c-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 6.043e-28 1362 4.177e-26 8 microRNA targets for hsa-miR-944 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 1.904e-27 1147 1.17e-25 9 microRNA targets for hsa-miR-548d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 2.048e-24 1020 1.133e-22 10 microRNA targets for hsa-miR-186 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 5.991e-24 900 3.012e-22 11 microRNA targets for hsa-miR-548a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 3.739e-23 1193 1.723e-21 12 microRNA targets for hsa-miR-561 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 2.697e-22 820 1.147e-20 13 microRNA targets for hsa-miR-655 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 1.319e-21 858 5.21e-20 14 microRNA targets for hsa-miR-23a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 2.989e-21 875 1.102e-19 15 microRNA targets for hsa-miR-23b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 3.216e-21 977 1.112e-19 16 microRNA targets for hsa-miR-559 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 2.692e-20 887 8.757e-19 17 microRNA targets for hsa-miR-181b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 3.943e-20 649 1.211e-18 18 microRNA targets for hsa-miR-144 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 6.184e-20 874 1.8e-18 19 microRNA targets for hsa-miR-340 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 2.918e-19 498 8.068e-18 20 microRNA targets for hsa-miR-26a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 5.742e-19 1107 1.512e-17 21 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 1.095e-18 882 2.751e-17 22 microRNA targets for hsa-miR-181d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 2.096e-18 754 5.04e-17 23 microRNA targets for hsa-miR-20a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 2.933e-18 402 6.758e-17 24 microRNA targets for hsa-miR-323-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 4.631e-18 736 1.024e-16 25 microRNA targets for hsa-miR-106b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 5.489e-18 493 1.168e-16 26 microRNA targets for hsa-miR-26b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 6.073e-18 686 1.244e-16 27 microRNA targets for hsa-miR-369-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-450b-5p View Gene Set 6.475e-18 691 1.279e-16 28 microRNA targets for hsa-miR-450b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 6.815e-18 879 1.3e-16 29 microRNA targets for hsa-miR-181a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 7.161e-18 909 1.32e-16 30 microRNA targets for hsa-miR-181c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 2.02e-17 781 3.508e-16 31 microRNA targets for hsa-miR-106a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 2.03e-17 731 3.508e-16 31 microRNA targets for hsa-miR-577 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 2.546e-17 727 4.267e-16 33 microRNA targets for hsa-miR-142-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 2.693e-17 948 4.38e-16 34 microRNA targets for hsa-miR-338-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 6.042e-17 902 9.546e-16 35 microRNA targets for hsa-miR-374b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-543 View Gene Set 1.697e-16 710 2.607e-15 36 microRNA targets for hsa-miR-543 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 4.969e-16 983 7.426e-15 37 microRNA targets for hsa-miR-570 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 6.785e-16 496 9.874e-15 38 microRNA targets for hsa-miR-380 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 9.741e-16 775 1.381e-14 39 microRNA targets for hsa-miR-93 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 1.354e-15 862 1.871e-14 40 microRNA targets for hsa-miR-524-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 1.827e-15 668 2.464e-14 41 microRNA targets for hsa-miR-200c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 2.468e-15 784 3.25e-14 42 microRNA targets for hsa-miR-17 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 4.214e-15 696 5.42e-14 43 microRNA targets for hsa-miR-494 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 6.223e-15 894 7.647e-14 44 microRNA targets for hsa-miR-374a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 6.13e-15 826 7.647e-14 44 microRNA targets for hsa-miR-520d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 7.473e-15 754 8.984e-14 46 microRNA targets for hsa-miR-203 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 1.185e-14 795 1.394e-13 47 microRNA targets for hsa-miR-20b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 1.451e-14 714 1.671e-13 48 microRNA targets for hsa-miR-519d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 1.848e-14 526 2.086e-13 49 microRNA targets for hsa-miR-582-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 4.035e-14 445 4.462e-13 50 microRNA targets for hsa-miR-130b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 4.606e-14 876 4.995e-13 51 microRNA targets for hsa-miR-656 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 5.066e-14 640 5.387e-13 52 microRNA targets for hsa-miR-429 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 5.895e-14 544 6.151e-13 53 microRNA targets for hsa-miR-381 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 7.893e-14 671 8.083e-13 54 microRNA targets for hsa-miR-200b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 2.24e-13 528 2.253e-12 55 microRNA targets for hsa-miR-300 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 4.828e-13 440 4.768e-12 56 microRNA targets for hsa-miR-130a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 6.987e-13 577 6.778e-12 57 microRNA targets for hsa-miR-452 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 9.85e-13 442 9.391e-12 58 microRNA targets for hsa-miR-301b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 1.445e-12 590 1.355e-11 59 microRNA targets for hsa-miR-587 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 1.712e-12 587 1.578e-11 60 microRNA targets for hsa-miR-586 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 1.753e-12 1246 1.589e-11 61 microRNA targets for hsa-miR-495 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 2.805e-12 433 2.502e-11 62 microRNA targets for hsa-miR-101 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 4.193e-12 589 3.681e-11 63 microRNA targets for hsa-miR-576-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 6.008e-12 442 5.192e-11 64 microRNA targets for hsa-miR-454 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 7.516e-12 333 6.394e-11 65 microRNA targets for hsa-miR-768-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-500 View Gene Set 8.366e-12 378 7.009e-11 66 microRNA targets for hsa-miR-500 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 1.044e-11 570 8.616e-11 67 microRNA targets for hsa-miR-871 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 1.227e-11 448 9.976e-11 68 microRNA targets for hsa-miR-301a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 1.634e-11 618 1.31e-10 69 microRNA targets for hsa-miR-522 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 3.312e-11 500 2.616e-10 70 microRNA targets for hsa-miR-448 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 3.482e-11 659 2.712e-10 71 microRNA targets for hsa-miR-641 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 4.541e-11 682 3.48e-10 72 microRNA targets for hsa-miR-330-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 4.593e-11 600 3.48e-10 72 microRNA targets for hsa-miR-545 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 4.773e-11 325 3.553e-10 74 microRNA targets for hsa-miR-148a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 4.819e-11 665 3.553e-10 74 microRNA targets for hsa-miR-30c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 4.983e-11 321 3.626e-10 76 microRNA targets for hsa-miR-361-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 5.565e-11 670 3.996e-10 77 microRNA targets for hsa-miR-30b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 6.663e-11 680 4.724e-10 78 microRNA targets for hsa-miR-30a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 1.122e-10 589 7.759e-10 79 microRNA targets for hsa-miR-200a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 1.11e-10 428 7.759e-10 79 microRNA targets for hsa-miR-802 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 2.676e-10 693 1.827e-09 81 microRNA targets for hsa-miR-30e from mirtarget2.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 3.12e-10 518 2.104e-09 82 microRNA targets for hsa-miR-27a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 3.446e-10 574 2.268e-09 83 microRNA targets for hsa-miR-141 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-222 View Gene Set 3.43e-10 243 2.268e-09 83 microRNA targets for hsa-miR-222 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-221 View Gene Set 4.389e-10 264 2.855e-09 85 microRNA targets for hsa-miR-221 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 4.858e-10 450 3.124e-09 86 microRNA targets for hsa-miR-888 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 5.264e-10 370 3.346e-09 87 microRNA targets for hsa-miR-224 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 6.909e-10 521 4.342e-09 88 microRNA targets for hsa-miR-568 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-32 View Gene Set 7.8e-10 373 4.847e-09 89 microRNA targets for hsa-miR-32 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 9.781e-10 427 6.01e-09 90 microRNA targets for hsa-miR-155 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 1.069e-09 694 6.499e-09 91 microRNA targets for hsa-miR-30d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 1.297e-09 524 7.796e-09 92 microRNA targets for hsa-miR-105 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 1.328e-09 493 7.894e-09 93 microRNA targets for hsa-miR-519c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-27b View Gene Set 1.872e-09 528 1.101e-08 94 microRNA targets for hsa-miR-27b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 2.724e-09 550 1.586e-08 95 microRNA targets for hsa-miR-320 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 2.756e-09 484 1.587e-08 96 microRNA targets for hsa-miR-519b-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 3.535e-09 329 2.015e-08 97 microRNA targets for hsa-miR-148b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 4.26e-09 337 2.404e-08 98 microRNA targets for hsa-miR-152 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 4.88e-09 443 2.726e-08 99 microRNA targets for hsa-miR-520e from mirtarget2.targets www.mirbase.org...
Null hsa-miR-140-5p View Gene Set 5.096e-09 248 2.818e-08 100 microRNA targets for hsa-miR-140-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 6.961e-09 350 3.811e-08 101 microRNA targets for hsa-miR-34b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-875-3p View Gene Set 8.22e-09 635 4.456e-08 102 microRNA targets for hsa-miR-875-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 8.381e-09 370 4.5e-08 103 microRNA targets for hsa-miR-302c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 9.185e-09 486 4.884e-08 104 microRNA targets for hsa-miR-519a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-367 View Gene Set 9.627e-09 388 5.07e-08 105 microRNA targets for hsa-miR-367 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 1.113e-08 563 5.807e-08 106 microRNA targets for hsa-miR-410 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 1.172e-08 539 6.059e-08 107 microRNA targets for hsa-miR-19a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520h View Gene Set 1.411e-08 428 7.225e-08 108 microRNA targets for hsa-miR-520h from mirtarget2.targets www.mirbase.org...
Null hsa-miR-25 View Gene Set 1.58e-08 398 8.017e-08 109 microRNA targets for hsa-miR-25 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-92b View Gene Set 1.61e-08 367 8.095e-08 110 microRNA targets for hsa-miR-92b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 1.638e-08 452 8.159e-08 111 microRNA targets for hsa-miR-520c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-549 View Gene Set 1.726e-08 200 8.522e-08 112 microRNA targets for hsa-miR-549 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-653 View Gene Set 1.987e-08 305 9.723e-08 113 microRNA targets for hsa-miR-653 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-365 View Gene Set 2.203e-08 156 1.068e-07 114 microRNA targets for hsa-miR-365 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 2.605e-08 429 1.253e-07 115 microRNA targets for hsa-miR-520g from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 3.489e-08 418 1.663e-07 116 microRNA targets for hsa-miR-302d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 3.747e-08 456 1.771e-07 117 microRNA targets for hsa-miR-520d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 4.438e-08 382 2.08e-07 118 microRNA targets for hsa-miR-302a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-892a View Gene Set 4.537e-08 352 2.108e-07 119 microRNA targets for hsa-miR-892a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 4.594e-08 355 2.117e-07 120 microRNA targets for hsa-miR-382 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 4.684e-08 536 2.141e-07 121 microRNA targets for hsa-miR-19b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 5.049e-08 282 2.289e-07 122 microRNA targets for hsa-miR-606 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 6.085e-08 303 2.736e-07 123 microRNA targets for hsa-miR-633 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-433 View Gene Set 7.046e-08 301 3.142e-07 124 microRNA targets for hsa-miR-433 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-363 View Gene Set 7.728e-08 365 3.419e-07 125 microRNA targets for hsa-miR-363 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 8.72e-08 404 3.827e-07 126 microRNA targets for hsa-miR-373 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-362-5p View Gene Set 9.156e-08 191 3.987e-07 127 microRNA targets for hsa-miR-362-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 9.934e-08 451 4.292e-07 128 microRNA targets for hsa-miR-520b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 1.103e-07 625 4.728e-07 129 microRNA targets for hsa-miR-579 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 1.133e-07 370 4.821e-07 130 microRNA targets for hsa-miR-889 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 1.251e-07 468 5.282e-07 131 microRNA targets for hsa-miR-520a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-501-5p View Gene Set 1.405e-07 462 5.884e-07 132 microRNA targets for hsa-miR-501-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 1.456e-07 365 6.049e-07 133 microRNA targets for hsa-miR-217 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-511 View Gene Set 1.466e-07 733 6.049e-07 133 microRNA targets for hsa-miR-511 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-509-5p View Gene Set 1.512e-07 365 6.195e-07 135 microRNA targets for hsa-miR-509-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-216a View Gene Set 1.591e-07 352 6.469e-07 136 microRNA targets for hsa-miR-216a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-92a View Gene Set 1.773e-07 359 7.155e-07 137 microRNA targets for hsa-miR-92a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 1.912e-07 342 7.661e-07 138 microRNA targets for hsa-miR-488 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 2.483e-07 372 9.877e-07 139 microRNA targets for hsa-miR-409-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 2.76e-07 314 1.084e-06 140 microRNA targets for hsa-miR-212 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 2.765e-07 406 1.084e-06 140 microRNA targets for hsa-miR-302b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 2.86e-07 283 1.114e-06 142 microRNA targets for hsa-miR-491-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 3.097e-07 449 1.198e-06 143 microRNA targets for hsa-miR-377 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 3.881e-07 455 1.48e-06 144 microRNA targets for hsa-miR-518a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-527 View Gene Set 3.881e-07 455 1.48e-06 144 microRNA targets for hsa-miR-527 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 4.214e-07 601 1.596e-06 146 microRNA targets for hsa-miR-539 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 5.528e-07 296 2.08e-06 147 microRNA targets for hsa-miR-132 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 6.703e-07 256 2.505e-06 148 microRNA targets for hsa-miR-219-2-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-135a View Gene Set 6.848e-07 301 2.527e-06 149 microRNA targets for hsa-miR-135a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-509-3-5p View Gene Set 6.854e-07 344 2.527e-06 149 microRNA targets for hsa-miR-509-3-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-371-5p View Gene Set 7.72e-07 354 2.827e-06 151 microRNA targets for hsa-miR-371-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 8.878e-07 327 3.23e-06 152 microRNA targets for hsa-miR-376c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-337-3p View Gene Set 9.015e-07 231 3.258e-06 153 microRNA targets for hsa-miR-337-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 1.026e-06 334 3.684e-06 154 microRNA targets for hsa-miR-421 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-885-5p View Gene Set 1.197e-06 167 4.269e-06 155 microRNA targets for hsa-miR-885-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 1.216e-06 435 4.309e-06 156 microRNA targets for hsa-miR-372 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-135b View Gene Set 1.275e-06 296 4.49e-06 157 microRNA targets for hsa-miR-135b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-190b View Gene Set 1.548e-06 189 5.418e-06 158 microRNA targets for hsa-miR-190b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-505 View Gene Set 1.572e-06 240 5.435e-06 159 microRNA targets for hsa-miR-505 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 1.568e-06 396 5.435e-06 159 microRNA targets for hsa-miR-515-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 1.78e-06 392 6.114e-06 161 microRNA targets for hsa-miR-216b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-192 View Gene Set 2.133e-06 121 7.281e-06 162 microRNA targets for hsa-miR-192 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-600 View Gene Set 2.703e-06 310 9.169e-06 163 microRNA targets for hsa-miR-600 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 3.066e-06 432 1.034e-05 164 microRNA targets for hsa-miR-124 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520f View Gene Set 3.316e-06 426 1.111e-05 165 microRNA targets for hsa-miR-520f from mirtarget2.targets www.mirbase.org...
Null hsa-miR-154 View Gene Set 3.456e-06 233 1.151e-05 166 microRNA targets for hsa-miR-154 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 3.824e-06 439 1.266e-05 167 microRNA targets for hsa-miR-506 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 4.158e-06 446 1.369e-05 168 microRNA targets for hsa-miR-603 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 5.196e-06 484 1.7e-05 169 microRNA targets for hsa-miR-544 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 5.913e-06 478 1.923e-05 170 microRNA targets for hsa-miR-182 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 6.514e-06 150 2.106e-05 171 microRNA targets for hsa-miR-142-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 8.159e-06 370 2.623e-05 172 microRNA targets for hsa-miR-485-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-129-5p View Gene Set 9.549e-06 925 3.052e-05 173 microRNA targets for hsa-miR-129-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 1.232e-05 225 3.915e-05 174 microRNA targets for hsa-miR-496 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 1.249e-05 261 3.948e-05 175 microRNA targets for hsa-miR-376a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 1.258e-05 260 3.954e-05 176 microRNA targets for hsa-miR-376b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 1.285e-05 286 4.015e-05 177 microRNA targets for hsa-miR-139-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-659 View Gene Set 1.315e-05 247 4.086e-05 178 microRNA targets for hsa-miR-659 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 1.361e-05 231 4.205e-05 179 microRNA targets for hsa-miR-582-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-215 View Gene Set 1.457e-05 117 4.475e-05 180 microRNA targets for hsa-miR-215 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 1.519e-05 172 4.642e-05 181 microRNA targets for hsa-miR-190 from mirtarget2.targets www.mirbase.org...