AFA results for: TSA1-e06.ls

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Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
KEGG 03040	View Gene Set	6.948e-10	128	1.487e-07	1	Spliceosome	www.genome.jp/d...
KEGG 04110	View Gene Set	1.735e-07	128	1.856e-05	2	Cell cycle	www.genome.jp/d...
KEGG 03018	View Gene Set	6.586e-06	59	0.0004698	3	RNA degradation	www.genome.jp/d...
KEGG 03030	View Gene Set	3.701e-05	36	0.00198	4	DNA replication	www.genome.jp/d...
KEGG 04120	View Gene Set	0.0003305	139	0.01415	5	Ubiquitin mediated proteolysis	www.genome.jp/d...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
GO GO:0090304	View Gene Set	4.36e-44	3724	5.824e-40	1	nucleic acid metabolic process	amigo.geneontol...
GO GO:0005634	View Gene Set	8.495e-43	5198	5.675e-39	2	nucleus	amigo.geneontol...
GO GO:0010467	View Gene Set	4.337e-39	3806	1.931e-35	3	gene expression	amigo.geneontol...
GO GO:0003676	View Gene Set	4.172e-37	2979	1.393e-33	4	nucleic acid binding	amigo.geneontol...
GO GO:0044260	View Gene Set	1.704e-34	5699	4.554e-31	5	cellular macromolecule metabolic process	amigo.geneontol...
GO GO:0044428	View Gene Set	4.735e-32	1938	1.054e-28	6	nuclear part	amigo.geneontol...
GO GO:0006139	View Gene Set	7.609e-31	4294	1.452e-27	7	nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0016070	View Gene Set	4.047e-30	2596	6.759e-27	8	RNA metabolic process	amigo.geneontol...
GO GO:0009059	View Gene Set	2.501e-28	3597	3.712e-25	9	macromolecule biosynthetic process	amigo.geneontol...
GO GO:0034645	View Gene Set	6.885e-28	3529	9.198e-25	10	cellular macromolecule biosynthetic process	amigo.geneontol...
GO GO:0043170	View Gene Set	2.276e-27	6274	2.764e-24	11	macromolecule metabolic process	amigo.geneontol...
GO GO:0031981	View Gene Set	6.982e-27	1518	7.175e-24	12	nuclear lumen	amigo.geneontol...
GO GO:0003723	View Gene Set	6.973e-27	732	7.175e-24	12	RNA binding	amigo.geneontol...
GO GO:0006396	View Gene Set	2.565e-25	578	2.448e-22	14	RNA processing	amigo.geneontol...
GO GO:0034641	View Gene Set	7.992e-25	4584	7.118e-22	15	cellular nitrogen compound metabolic process	amigo.geneontol...
GO GO:0006807	View Gene Set	1.621e-22	4698	1.353e-19	16	nitrogen compound metabolic process	amigo.geneontol...
GO GO:0006350	View Gene Set	8.7e-21	2744	6.837e-18	17	transcription	amigo.geneontol...
GO GO:0010556	View Gene Set	2.171e-20	2901	1.611e-17	18	regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0060255	View Gene Set	2.66e-20	3411	1.736e-17	19	regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0005654	View Gene Set	2.728e-20	939	1.736e-17	19	nucleoplasm	amigo.geneontol...
GO GO:0070013	View Gene Set	2.596e-20	1845	1.736e-17	19	intracellular organelle lumen	amigo.geneontol...
GO GO:0016071	View Gene Set	3.456e-20	381	2.099e-17	22	mRNA metabolic process	amigo.geneontol...
GO GO:0010468	View Gene Set	3.703e-20	2958	2.137e-17	23	regulation of gene expression	amigo.geneontol...
GO GO:0043233	View Gene Set	3.838e-20	1881	2.137e-17	23	organelle lumen	amigo.geneontol...
GO GO:0031974	View Gene Set	8.293e-20	1917	4.432e-17	25	membrane-enclosed lumen	amigo.geneontol...
GO GO:0008380	View Gene Set	9.122e-20	300	4.687e-17	26	RNA splicing	amigo.geneontol...
GO GO:0006397	View Gene Set	9.793e-20	317	4.846e-17	27	mRNA processing	amigo.geneontol...
GO GO:0045449	View Gene Set	1.22e-18	2647	5.819e-16	28	regulation of transcription	amigo.geneontol...
GO GO:0009889	View Gene Set	3.315e-17	3070	1.527e-14	29	regulation of biosynthetic process	amigo.geneontol...
GO GO:0031326	View Gene Set	3.558e-17	3048	1.585e-14	30	regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0000775	View Gene Set	2.389e-16	146	1.03e-13	31	chromosome centromeric region	amigo.geneontol...
GO GO:0043231	View Gene Set	5.142e-16	8376	2.147e-13	32	intracellular membrane-bounded organelle	amigo.geneontol...
GO GO:0043227	View Gene Set	5.889e-16	8383	2.384e-13	33	membrane-bounded organelle	amigo.geneontol...
GO GO:0030529	View Gene Set	7.199e-16	504	2.829e-13	34	ribonucleoprotein complex	amigo.geneontol...
GO GO:0044249	View Gene Set	1.04e-15	4326	3.971e-13	35	cellular biosynthetic process	amigo.geneontol...
GO GO:0019219	View Gene Set	1.812e-15	3040	6.725e-13	36	regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0005730	View Gene Set	3.642e-15	734	1.315e-12	37	nucleolus	amigo.geneontol...
GO GO:0080090	View Gene Set	4.435e-15	3585	1.559e-12	38	regulation of primary metabolic process	amigo.geneontol...
GO GO:0051171	View Gene Set	7.349e-15	3066	2.518e-12	39	regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0009058	View Gene Set	4.654e-14	4436	1.554e-11	40	biosynthetic process	amigo.geneontol...
GO GO:0005694	View Gene Set	9.145e-14	507	2.98e-11	41	chromosome	amigo.geneontol...
GO GO:0003677	View Gene Set	9.99e-14	2028	3.178e-11	42	DNA binding	amigo.geneontol...
GO GO:0044451	View Gene Set	2.745e-13	600	8.527e-11	43	nucleoplasm part	amigo.geneontol...
GO GO:0031323	View Gene Set	7.598e-12	3768	2.307e-09	44	regulation of cellular metabolic process	amigo.geneontol...
GO GO:0000278	View Gene Set	7.836e-12	489	2.326e-09	45	mitotic cell cycle	amigo.geneontol...
GO GO:0048285	View Gene Set	1.78e-11	286	5.17e-09	46	organelle fission	amigo.geneontol...
GO GO:0000280	View Gene Set	2.183e-11	276	6.075e-09	47	nuclear division	amigo.geneontol...
GO GO:0007067	View Gene Set	2.183e-11	276	6.075e-09	47	mitosis	amigo.geneontol...
GO GO:0032774	View Gene Set	3.061e-11	1953	8.345e-09	49	RNA biosynthetic process	amigo.geneontol...
GO GO:0000793	View Gene Set	3.322e-11	136	8.877e-09	50	condensed chromosome	amigo.geneontol...
GO GO:0006351	View Gene Set	4.409e-11	1949	1.155e-08	51	transcription DNA-dependent	amigo.geneontol...
GO GO:0044427	View Gene Set	5.093e-11	420	1.308e-08	52	chromosomal part	amigo.geneontol...
GO GO:0000087	View Gene Set	5.49e-11	286	1.384e-08	53	M phase of mitotic cell cycle	amigo.geneontol...
GO GO:0043229	View Gene Set	1.229e-10	9346	3.041e-08	54	intracellular organelle	amigo.geneontol...
GO GO:0019222	View Gene Set	1.326e-10	4060	3.22e-08	55	regulation of metabolic process	amigo.geneontol...
GO GO:0000279	View Gene Set	1.565e-10	406	3.735e-08	56	M phase	amigo.geneontol...
GO GO:0007059	View Gene Set	1.676e-10	94	3.928e-08	57	chromosome segregation	amigo.geneontol...
GO GO:0043226	View Gene Set	2.93e-10	9360	6.749e-08	58	organelle	amigo.geneontol...
GO GO:0051252	View Gene Set	3.858e-10	1869	8.735e-08	59	regulation of RNA metabolic process	amigo.geneontol...
GO GO:0000819	View Gene Set	1.168e-09	38	2.59e-07	60	sister chromatid segregation	amigo.geneontol...
GO GO:0044237	View Gene Set	1.183e-09	7431	2.59e-07	60	cellular metabolic process	amigo.geneontol...
GO GO:0000776	View Gene Set	1.508e-09	92	3.249e-07	62	kinetochore	amigo.geneontol...
GO GO:0000375	View Gene Set	1.655e-09	106	3.509e-07	63	RNA splicing via transesterification reactions	amigo.geneontol...
GO GO:0022403	View Gene Set	1.785e-09	522	3.726e-07	64	cell cycle phase	amigo.geneontol...
GO GO:0006355	View Gene Set	1.937e-09	1820	3.98e-07	65	regulation of transcription DNA-dependent	amigo.geneontol...
GO GO:0000070	View Gene Set	2.159e-09	37	4.37e-07	66	mitotic sister chromatid segregation	amigo.geneontol...
GO GO:0000779	View Gene Set	2.897e-09	79	5.777e-07	67	condensed chromosome centromeric region	amigo.geneontol...
GO GO:0032991	View Gene Set	4.774e-09	3237	9.38e-07	68	macromolecular complex	amigo.geneontol...
GO GO:0051301	View Gene Set	7.849e-09	358	1.52e-06	69	cell division	amigo.geneontol...
GO GO:0005681	View Gene Set	9.914e-09	135	1.892e-06	70	spliceosomal complex	amigo.geneontol...
GO GO:0022402	View Gene Set	1.044e-08	676	1.964e-06	71	cell cycle process	amigo.geneontol...
GO GO:0006259	View Gene Set	1.308e-08	592	2.428e-06	72	DNA metabolic process	amigo.geneontol...
GO GO:0000777	View Gene Set	1.656e-08	74	3.03e-06	73	condensed chromosome kinetochore	amigo.geneontol...
GO GO:0008270	View Gene Set	3.175e-08	2009	5.731e-06	74	zinc ion binding	amigo.geneontol...
GO GO:0016604	View Gene Set	3.424e-08	198	6.099e-06	75	nuclear body	amigo.geneontol...
GO GO:0044238	View Gene Set	3.728e-08	7629	6.554e-06	76	primary metabolic process	amigo.geneontol...
GO GO:0051276	View Gene Set	4.242e-08	548	7.36e-06	77	chromosome organization	amigo.geneontol...
GO GO:0016741	View Gene Set	5.346e-08	179	9.156e-06	78	transferase activity transferring one-carbon groups	amigo.geneontol...
GO GO:0008168	View Gene Set	1.103e-07	176	1.866e-05	79	methyltransferase activity	amigo.geneontol...
GO GO:0070647	View Gene Set	1.221e-07	356	2.039e-05	80	protein modification by small protein conjugation or removal	amigo.geneontol...
GO GO:0000377	View Gene Set	2.005e-07	97	3.267e-05	81	RNA splicing via transesterification reactions with bulged adenosine as nucleophile	amigo.geneontol...
GO GO:0000398	View Gene Set	2.005e-07	97	3.267e-05	81	nuclear mRNA splicing via spliceosome	amigo.geneontol...
GO GO:0006412	View Gene Set	3.579e-07	412	5.761e-05	83	translation	amigo.geneontol...
GO GO:0032446	View Gene Set	3.693e-07	310	5.874e-05	84	protein modification by small protein conjugation	amigo.geneontol...
GO GO:0010605	View Gene Set	4.761e-07	827	7.484e-05	85	negative regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0007049	View Gene Set	5.857e-07	1006	9.099e-05	86	cell cycle	amigo.geneontol...
GO GO:0016568	View Gene Set	1.11e-06	324	0.0001704	87	chromatin modification	amigo.geneontol...
GO GO:0030528	View Gene Set	1.42e-06	950	0.0002156	88	transcription regulator activity	amigo.geneontol...
GO GO:0007052	View Gene Set	1.469e-06	22	0.0002206	89	mitotic spindle organization	amigo.geneontol...
GO GO:0030530	View Gene Set	1.691e-06	17	0.0002509	90	heterogeneous nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0003690	View Gene Set	1.723e-06	99	0.0002529	91	double-stranded DNA binding	amigo.geneontol...
GO GO:0043228	View Gene Set	2.01e-06	2690	0.0002888	92	non-membrane-bounded organelle	amigo.geneontol...
GO GO:0043232	View Gene Set	2.01e-06	2690	0.0002888	92	intracellular non-membrane-bounded organelle	amigo.geneontol...
GO GO:0006974	View Gene Set	2.189e-06	412	0.0003111	94	response to DNA damage stimulus	amigo.geneontol...
GO GO:0034470	View Gene Set	2.408e-06	193	0.0003386	95	ncRNA processing	amigo.geneontol...
GO GO:0007051	View Gene Set	2.575e-06	57	0.0003583	96	spindle organization	amigo.geneontol...
GO GO:0022618	View Gene Set	3.152e-06	76	0.0004341	97	ribonucleoprotein complex assembly	amigo.geneontol...
GO GO:0051340	View Gene Set	3.528e-06	85	0.000481	98	regulation of ligase activity	amigo.geneontol...
GO GO:0010629	View Gene Set	3.701e-06	573	0.0004994	99	negative regulation of gene expression	amigo.geneontol...
GO GO:0022613	View Gene Set	4.106e-06	194	0.0005486	100	ribonucleoprotein complex biogenesis	amigo.geneontol...
GO GO:0006260	View Gene Set	4.305e-06	239	0.0005694	101	DNA replication	amigo.geneontol...
GO GO:0000123	View Gene Set	4.711e-06	50	0.000617	102	histone acetyltransferase complex	amigo.geneontol...
GO GO:0008152	View Gene Set	6.796e-06	8439	0.0008815	103	metabolic process	amigo.geneontol...
GO GO:0005876	View Gene Set	6.964e-06	35	0.0008946	104	spindle microtubule	amigo.geneontol...
GO GO:0000922	View Gene Set	7.217e-06	63	0.0009183	105	spindle pole	amigo.geneontol...
GO GO:0031577	View Gene Set	7.721e-06	17	0.0009732	106	spindle checkpoint	amigo.geneontol...
GO GO:0051439	View Gene Set	9.19e-06	68	0.001147	107	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0051351	View Gene Set	1.053e-05	74	0.001302	108	positive regulation of ligase activity	amigo.geneontol...
GO GO:0000228	View Gene Set	1.251e-05	177	0.001534	109	nuclear chromosome	amigo.geneontol...
GO GO:0009892	View Gene Set	1.413e-05	889	0.001716	110	negative regulation of metabolic process	amigo.geneontol...
GO GO:0043566	View Gene Set	1.453e-05	149	0.001749	111	structure-specific DNA binding	amigo.geneontol...
GO GO:0031324	View Gene Set	1.521e-05	809	0.001815	112	negative regulation of cellular metabolic process	amigo.geneontol...
GO GO:0016481	View Gene Set	1.536e-05	512	0.001816	113	negative regulation of transcription	amigo.geneontol...
GO GO:0007346	View Gene Set	1.605e-05	174	0.001881	114	regulation of mitotic cell cycle	amigo.geneontol...
GO GO:0046914	View Gene Set	1.716e-05	2285	0.001993	115	transition metal ion binding	amigo.geneontol...
GO GO:0031145	View Gene Set	1.808e-05	64	0.002082	116	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	amigo.geneontol...
GO GO:0030518	View Gene Set	1.896e-05	73	0.002165	117	steroid hormone receptor signaling pathway	amigo.geneontol...
GO GO:0003713	View Gene Set	1.915e-05	215	0.002169	118	transcription coactivator activity	amigo.geneontol...
GO GO:0045934	View Gene Set	1.938e-05	574	0.002176	119	negative regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0044424	View Gene Set	1.967e-05	10976	0.002189	120	intracellular part	amigo.geneontol...
GO GO:0016567	View Gene Set	2.099e-05	286	0.002318	121	protein ubiquitination	amigo.geneontol...
GO GO:0051436	View Gene Set	2.298e-05	62	0.002516	122	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0051438	View Gene Set	2.505e-05	82	0.002721	123	regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0010564	View Gene Set	2.576e-05	161	0.002776	124	regulation of cell cycle process	amigo.geneontol...
GO GO:0003712	View Gene Set	2.681e-05	364	0.002865	125	transcription cofactor activity	amigo.geneontol...
GO GO:0010558	View Gene Set	2.982e-05	611	0.003162	126	negative regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0051172	View Gene Set	3.105e-05	580	0.003241	127	negative regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0016563	View Gene Set	3.095e-05	430	0.003241	127	transcription activator activity	amigo.geneontol...
GO GO:0030522	View Gene Set	3.155e-05	95	0.003268	129	intracellular receptor mediated signaling pathway	amigo.geneontol...
GO GO:0005622	View Gene Set	3.29e-05	11329	0.003381	130	intracellular	amigo.geneontol...
GO GO:0005819	View Gene Set	3.568e-05	167	0.003639	131	spindle	amigo.geneontol...
GO GO:0051352	View Gene Set	4.097e-05	66	0.004085	132	negative regulation of ligase activity	amigo.geneontol...
GO GO:0051444	View Gene Set	4.097e-05	66	0.004085	132	negative regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0000940	View Gene Set	4.065e-05	12	0.004085	132	outer kinetochore of condensed chromosome	amigo.geneontol...
GO GO:0000245	View Gene Set	4.272e-05	34	0.004227	135	spliceosome assembly	amigo.geneontol...
GO GO:0051310	View Gene Set	4.332e-05	13	0.004255	136	metaphase plate congression	amigo.geneontol...
GO GO:0008033	View Gene Set	4.463e-05	78	0.004353	137	tRNA processing	amigo.geneontol...
GO GO:0006281	View Gene Set	4.793e-05	309	0.00464	138	DNA repair	amigo.geneontol...
GO GO:0016607	View Gene Set	4.962e-05	116	0.004769	139	nuclear speck	amigo.geneontol...
GO GO:0050000	View Gene Set	5.32e-05	17	0.00497	140	chromosome localization	amigo.geneontol...
GO GO:0051303	View Gene Set	5.32e-05	17	0.00497	140	establishment of chromosome localization	amigo.geneontol...
GO GO:0000313	View Gene Set	5.261e-05	49	0.00497	140	organellar ribosome	amigo.geneontol...
GO GO:0005761	View Gene Set	5.261e-05	49	0.00497	140	mitochondrial ribosome	amigo.geneontol...
GO GO:0008608	View Gene Set	6.547e-05	8	0.006032	144	attachment of spindle microtubules to kinetochore	amigo.geneontol...
GO GO:0051313	View Gene Set	6.547e-05	8	0.006032	144	attachment of spindle microtubules to chromosome	amigo.geneontol...
GO GO:0043981	View Gene Set	6.66e-05	6	0.006053	146	histone H4-K5 acetylation	amigo.geneontol...
GO GO:0043982	View Gene Set	6.66e-05	6	0.006053	146	histone H4-K8 acetylation	amigo.geneontol...
GO GO:0051427	View Gene Set	7.007e-05	90	0.006325	148	hormone receptor binding	amigo.geneontol...
GO GO:0008139	View Gene Set	7.291e-05	9	0.006538	149	nuclear localization sequence binding	amigo.geneontol...
GO GO:0051437	View Gene Set	7.434e-05	64	0.006621	150	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0051443	View Gene Set	7.559e-05	71	0.006688	151	positive regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0006511	View Gene Set	7.816e-05	296	0.00687	152	ubiquitin-dependent protein catabolic process	amigo.geneontol...
GO GO:0005667	View Gene Set	8.329e-05	201	0.007272	153	transcription factor complex	amigo.geneontol...
GO GO:0034660	View Gene Set	8.476e-05	236	0.007284	154	ncRNA metabolic process	amigo.geneontol...
GO GO:0000314	View Gene Set	8.506e-05	18	0.007284	154	organellar small ribosomal subunit	amigo.geneontol...
GO GO:0005763	View Gene Set	8.506e-05	18	0.007284	154	mitochondrial small ribosomal subunit	amigo.geneontol...
GO GO:0006325	View Gene Set	8.563e-05	425	0.007287	157	chromatin organization	amigo.geneontol...
GO GO:0071173	View Gene Set	9.207e-05	14	0.007785	158	spindle assembly checkpoint	amigo.geneontol...
GO GO:0071564	View Gene Set	0.0001035	11	0.008695	159	npBAF complex	amigo.geneontol...
GO GO:0044267	View Gene Set	0.0001129	2465	0.009429	160	cellular protein metabolic process	amigo.geneontol...
GO GO:0051253	View Gene Set	0.0001136	420	0.009429	160	negative regulation of RNA metabolic process	amigo.geneontol...
GO GO:0030521	View Gene Set	0.0001156	47	0.00953	162	androgen receptor signaling pathway	amigo.geneontol...
GO GO:0071174	View Gene Set	0.0001174	13	0.009622	163	mitotic cell cycle spindle checkpoint	amigo.geneontol...
GO GO:0006376	View Gene Set	0.000123	15	0.01002	164	mRNA splice site selection	amigo.geneontol...
GO GO:0006399	View Gene Set	0.0001303	118	0.01055	165	tRNA metabolic process	amigo.geneontol...
GO GO:0035257	View Gene Set	0.0001384	79	0.01114	166	nuclear hormone receptor binding	amigo.geneontol...
GO GO:0032268	View Gene Set	0.0001398	576	0.01118	167	regulation of cellular protein metabolic process	amigo.geneontol...
GO GO:0031327	View Gene Set	0.0001614	629	0.01283	168	negative regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0031398	View Gene Set	0.0001768	95	0.01398	169	positive regulation of protein ubiquitination	amigo.geneontol...
GO GO:0044446	View Gene Set	0.0001846	5019	0.01451	170	intracellular organelle part	amigo.geneontol...
GO GO:0008170	View Gene Set	0.0001892	58	0.01478	171	N-methyltransferase activity	amigo.geneontol...
GO GO:0006302	View Gene Set	0.0001935	65	0.01503	172	double-strand break repair	amigo.geneontol...
GO GO:0051246	View Gene Set	0.0001982	652	0.01531	173	regulation of protein metabolic process	amigo.geneontol...
GO GO:0043983	View Gene Set	0.0002239	7	0.01719	174	histone H4-K12 acetylation	amigo.geneontol...
GO GO:0009890	View Gene Set	0.0002375	642	0.01813	175	negative regulation of biosynthetic process	amigo.geneontol...
GO GO:0045892	View Gene Set	0.0002391	413	0.01815	176	negative regulation of transcription DNA-dependent	amigo.geneontol...
GO GO:0000122	View Gene Set	0.0002691	292	0.02031	177	negative regulation of transcription from RNA polymerase II promoter	amigo.geneontol...
GO GO:0008134	View Gene Set	0.0002788	525	0.02093	178	transcription factor binding	amigo.geneontol...
GO GO:0006310	View Gene Set	0.000284	130	0.02119	179	DNA recombination	amigo.geneontol...
GO GO:0007080	View Gene Set	0.0002941	11	0.02173	180	mitotic metaphase plate congression	amigo.geneontol...
GO GO:0008757	View Gene Set	0.0002944	91	0.02173	180	S-adenosylmethionine-dependent methyltransferase activity	amigo.geneontol...
GO GO:0006403	View Gene Set	0.0003032	104	0.02226	182	RNA localization	amigo.geneontol...
GO GO:0005840	View Gene Set	0.0003155	198	0.02304	183	ribosome	amigo.geneontol...
GO GO:0019941	View Gene Set	0.0003321	302	0.02398	184	modification-dependent protein catabolic process	amigo.geneontol...
GO GO:0043632	View Gene Set	0.0003321	302	0.02398	184	modification-dependent macromolecule catabolic process	amigo.geneontol...
GO GO:0000778	View Gene Set	0.0003583	4	0.02573	186	condensed nuclear chromosome kinetochore	amigo.geneontol...
GO GO:0035196	View Gene Set	0.0003714	13	0.02654	187	production of miRNAs involved in gene silencing by miRNA	amigo.geneontol...
GO GO:0042054	View Gene Set	0.0003784	44	0.02689	188	histone methyltransferase activity	amigo.geneontol...
GO GO:0044265	View Gene Set	0.0003835	479	0.02711	189	cellular macromolecule catabolic process	amigo.geneontol...
GO GO:0042809	View Gene Set	0.0003873	16	0.02723	190	vitamin D receptor binding	amigo.geneontol...
GO GO:0050657	View Gene Set	0.0004113	102	0.02847	191	nucleic acid transport	amigo.geneontol...
GO GO:0050658	View Gene Set	0.0004113	102	0.02847	191	RNA transport	amigo.geneontol...
GO GO:0051236	View Gene Set	0.0004113	102	0.02847	191	establishment of RNA localization	amigo.geneontol...
GO GO:0030163	View Gene Set	0.0004246	398	0.02924	194	protein catabolic process	amigo.geneontol...
GO GO:0007094	View Gene Set	0.0004378	12	0.02954	195	mitotic cell cycle spindle assembly checkpoint	amigo.geneontol...
GO GO:0045841	View Gene Set	0.0004378	13	0.02954	195	negative regulation of mitotic metaphase/anaphase transition	amigo.geneontol...
GO GO:0016514	View Gene Set	0.0004358	15	0.02954	195	SWI/SNF complex	amigo.geneontol...
GO GO:0008301	View Gene Set	0.0004329	12	0.02954	195	DNA bending activity	amigo.geneontol...
GO GO:0031050	View Gene Set	0.0004504	14	0.02979	199	dsRNA fragmentation	amigo.geneontol...
GO GO:0070918	View Gene Set	0.0004504	14	0.02979	199	production of small RNA involved in gene silencing by RNA	amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN	View Gene Set	8.892e-58	1253	2.127e-54	1	Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue.	www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK	View Gene Set	6.161e-41	744	7.369e-38	2	Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200].	www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	View Gene Set	2.008e-40	1180	1.601e-37	3	Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314].	www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK	View Gene Set	1.078e-39	1582	6.445e-37	4	Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues.	www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK	View Gene Set	1.176e-27	410	5.626e-25	5	Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues.	www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE	View Gene Set	2.167e-23	331	8.638e-21	6	The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module.	www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK	View Gene Set	2.554e-22	164	8.728e-20	7	Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues.	www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK	View Gene Set	4.008e-22	1375	1.082e-19	8	Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues.	www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN	View Gene Set	4.072e-22	243	1.082e-19	8	Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h.	www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP	View Gene Set	6.188e-21	577	1.48e-18	10	Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1).	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	View Gene Set	2.83e-20	184	6.154e-18	11	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering.	www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER	View Gene Set	3.451e-20	138	6.88e-18	12	The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome.	www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP	View Gene Set	1.378e-18	406	2.536e-16	13	Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples.	www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN	View Gene Set	2.162e-18	415	3.694e-16	14	Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector.	www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6	View Gene Set	3.582e-18	435	5.711e-16	15	Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome.	www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	View Gene Set	5.057e-18	436	7.56e-16	16	Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs.	www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP	View Gene Set	1.008e-17	143	1.419e-15	17	Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3.	www.broad.mit.e...
Broad BIDUS_METASTASIS_UP	View Gene Set	2.024e-17	203	2.689e-15	18	Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP	View Gene Set	2.549e-16	589	3.126e-14	19	Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP	View Gene Set	2.614e-16	452	3.126e-14	19	Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335].	www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN	View Gene Set	1.474e-15	201	1.679e-13	21	Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1.	www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP	View Gene Set	1.866e-15	370	2.029e-13	22	Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells.	www.broad.mit.e...
Broad MANALO_HYPOXIA_DN	View Gene Set	9.722e-15	276	1.011e-12	23	Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091].	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	View Gene Set	1.245e-14	681	1.241e-12	24	Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2	View Gene Set	2.088e-14	265	1.998e-12	25	Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN	View Gene Set	2.481e-14	80	2.283e-12	26	Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN	View Gene Set	8.615e-13	96	7.632e-11	27	Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444].	www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP	View Gene Set	9.483e-13	485	8.102e-11	28	Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector.	www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN	View Gene Set	9.896e-13	859	8.162e-11	29	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi.	www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN	View Gene Set	2.363e-12	62	1.884e-10	30	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP	View Gene Set	2.67e-12	269	2.06e-10	31	Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue.	www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK	View Gene Set	7.446e-12	92	5.566e-10	32	Genes constituting the BRCA-centered network (BCN).	www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN	View Gene Set	1.635e-11	158	1.185e-09	33	Genes down-regulated in Wilm's tumor samples compared to fetal kidney.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP	View Gene Set	1.777e-11	53	1.25e-09	34	The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele.	www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP	View Gene Set	2.134e-11	43	1.458e-09	35	Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes.	www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP	View Gene Set	2.615e-11	152	1.737e-09	36	Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years.	www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN	View Gene Set	3.498e-11	61	2.261e-09	37	Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562].	www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_DN	View Gene Set	4.661e-11	241	2.934e-09	38	Genes down-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562].	www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN	View Gene Set	1.296e-10	241	7.95e-09	39	Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties.	www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP	View Gene Set	2.037e-10	178	1.218e-08	40	Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi.	www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX	View Gene Set	2.569e-10	757	1.499e-08	41	Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613].	www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP	View Gene Set	3.553e-10	53	2.023e-08	42	Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive.	www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP	View Gene Set	3.887e-10	180	2.162e-08	43	Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients.	www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS	View Gene Set	4.247e-10	92	2.309e-08	44	Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues.	www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN	View Gene Set	5.059e-10	131	2.689e-08	45	Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi.	www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP	View Gene Set	9.78e-10	144	5.086e-08	46	Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones.	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN	View Gene Set	1.081e-09	51	5.423e-08	47	Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC).	www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN	View Gene Set	1.088e-09	138	5.423e-08	47	Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371].	www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP	View Gene Set	1.892e-09	93	9.235e-08	49	Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte.	www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN	View Gene Set	1.945e-09	332	9.304e-08	50	Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265].	www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES	View Gene Set	2.001e-09	630	9.387e-08	51	Genes showing cell-cycle stage-specific expression [PMID=12058064].	www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN	View Gene Set	1.772e-08	475	8.151e-07	52	Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation.	www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS	View Gene Set	1.83e-08	19	8.261e-07	53	RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1.	www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN	View Gene Set	1.991e-08	289	8.818e-07	54	Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi.	www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	View Gene Set	2.115e-08	825	9.034e-07	55	Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation.	www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP	View Gene Set	2.108e-08	80	9.034e-07	55	Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages.	www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN	View Gene Set	2.179e-08	256	9.144e-07	57	Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation.	www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_DN	View Gene Set	3.413e-08	250	1.407e-06	58	Genes down-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562].	www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN	View Gene Set	4.131e-08	121	1.675e-06	59	Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495].	www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN	View Gene Set	5.005e-08	431	1.97e-06	60	Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490].	www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN	View Gene Set	5.023e-08	86	1.97e-06	60	Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors.	www.broad.mit.e...
Broad REN_BOUND_BY_E2F	View Gene Set	5.583e-08	47	2.154e-06	62	Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay.	www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215	View Gene Set	9.465e-08	809	3.594e-06	63	Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h.	www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP	View Gene Set	9.999e-08	408	3.737e-06	64	Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples.	www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP	View Gene Set	1.114e-07	1353	4.099e-06	65	Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM	View Gene Set	1.707e-07	154	6.187e-06	66	Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum.	www.broad.mit.e...
Broad YU_MYC_TARGETS_UP	View Gene Set	2.454e-07	37	8.761e-06	67	Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609].	www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP	View Gene Set	2.994e-07	52	1.053e-05	68	Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage.	www.broad.mit.e...
Broad MUELLER_PLURINET	View Gene Set	3.087e-07	294	1.07e-05	69	Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells).	www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP	View Gene Set	3.277e-07	537	1.12e-05	70	Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h.	www.broad.mit.e...
Broad BENPORATH_PROLIFERATION	View Gene Set	3.889e-07	140	1.31e-05	71	Set 'Proliferation Cluster': genes defined in human breast tumor expression data.	www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP	View Gene Set	5.133e-07	279	1.705e-05	72	Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_KINOME_RED	View Gene Set	6.303e-07	15	2.038e-05	73	Genes in the red cluster of protein kinases distinguishing between luminal A and basal breast cancer subtypes.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL	View Gene Set	6.303e-07	15	2.038e-05	73	Protein kinases distinguishing between basal and luminal A subtypes of breast cancer.	www.broad.mit.e...
Broad LY_AGING_OLD_DN	View Gene Set	7.129e-07	47	2.274e-05	75	Genes up-regulated in fibroblasts from old individuals compared to those from young donors.	www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN	View Gene Set	7.575e-07	303	2.384e-05	76	Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes.	www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP	View Gene Set	8.523e-07	192	2.648e-05	77	Genes enriched in embryonic neural and hematopoietic stem cells.	www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN	View Gene Set	8.96e-07	351	2.748e-05	78	Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids.	www.broad.mit.e...
Broad MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP	View Gene Set	9.129e-07	92	2.764e-05	79	Genes correlated with the early tumor onset in the Emu-myc transgenic mouse lymphoma model.	www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN	View Gene Set	9.918e-07	418	2.965e-05	80	Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation.	www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP	View Gene Set	1.259e-06	290	3.719e-05	81	Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma.	www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP	View Gene Set	1.595e-06	135	4.653e-05	82	Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360].	www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN	View Gene Set	1.685e-06	52	4.856e-05	83	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION	View Gene Set	1.842e-06	71	5.246e-05	84	Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2	View Gene Set	2.024e-06	33	5.695e-05	85	Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples.	www.broad.mit.e...
Broad WANG_LMO4_TARGETS_DN	View Gene Set	2.491e-06	327	6.928e-05	86	Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system.	www.broad.mit.e...
Broad OSMAN_BLADDER_CANCER_UP	View Gene Set	3.651e-06	387	9.814e-05	87	Genes up-regulated in blood samples from bladder cancer patients.	www.broad.mit.e...
Broad RICKMAN_METASTASIS_UP	View Gene Set	3.62e-06	316	9.814e-05	87	Genes up-regulated in metastatic vs non-metastatic HNSCC (head and neck squamous cell carcinoma) samples.	www.broad.mit.e...
Broad GALE_APL_WITH_FLT3_MUTATED_UP	View Gene Set	3.575e-06	52	9.814e-05	87	Genes up-regulated in acute promyelocytic leukemia (APL) patients with mutated FLT3 [Gene ID=2322].	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION_CCNE1	View Gene Set	3.864e-06	38	0.0001027	90	Selected gradually up-regulated genes whose expression profile follows that of CCNE1 [Gene ID=898] in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN	View Gene Set	4.328e-06	42	0.0001138	91	Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037].	www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN	View Gene Set	6.924e-06	571	0.0001781	92	Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.	www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN	View Gene Set	6.982e-06	139	0.0001781	92	Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi.	www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G6	View Gene Set	6.998e-06	122	0.0001781	92	Cluster G6: genes increasingly down-regulated in NHEK cells (normal keratinocyte) after UV-B irradiation.	www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_DN	View Gene Set	1.001e-05	161	0.0002521	95	Genes down-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999].	www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE	View Gene Set	1.051e-05	36	0.0002618	96	Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation.	www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN	View Gene Set	1.229e-05	22	0.000303	97	Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161].	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN	View Gene Set	1.716e-05	155	0.000419	98	Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples.	www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN	View Gene Set	1.753e-05	212	0.0004236	99	Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199].	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP	View Gene Set	2.572e-05	36	0.0006091	100	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_DN	View Gene Set	2.572e-05	36	0.0006091	100	Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	View Gene Set	2.714e-05	44	0.0006365	102	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G123 defined by unsupervised clustering.	www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN	View Gene Set	3.742e-05	599	0.000869	103	Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress.	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP	View Gene Set	3.954e-05	314	0.0009095	104	Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN	View Gene Set	5.019e-05	49	0.001143	105	Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector.	www.broad.mit.e...
Broad CHANG_CYCLING_GENES	View Gene Set	5.439e-05	49	0.001227	106	Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature.	www.broad.mit.e...
Broad PYEON_CANCER_HEAD_AND_NECK_VS_CERVICAL_UP	View Gene Set	5.995e-05	175	0.00134	107	Up-regulated genes in head and neck cancer compared to cervical carcinoma samples.	www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN	View Gene Set	6.649e-05	42	0.001473	108	Genes down-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI [Gene ID=23495].	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN	View Gene Set	6.958e-05	46	0.001527	109	Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone.	www.broad.mit.e...
Broad SU_TESTIS	View Gene Set	7.142e-05	75	0.001553	110	Genes up-regulated specifically in human testis tissue.	www.broad.mit.e...
Broad GEORGES_CELL_CYCLE_MIR192_TARGETS	View Gene Set	0.0001027	59	0.002213	111	Experimentally validated direct targets of MIR192 [Gene ID=406967] microRNA; MIR192 caused cell cycle arrest in HCT116 cells (colon cancer).	www.broad.mit.e...
Broad MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP	View Gene Set	0.0001045	10	0.002232	112	Up-regulated genes predicting poor survival of patients with thyroid carcinoma.	www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP	View Gene Set	0.0001075	242	0.002275	113	Genes up-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis).	www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP	View Gene Set	0.0001249	87	0.00262	114	Top 100 probe sets contrubuting to the positive side of the 2nd principal component; associated with adipocytic differentiation.	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP	View Gene Set	0.0001442	135	0.003	115	Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability.	www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN	View Gene Set	0.0001475	43	0.003015	116	Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757].	www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER	View Gene Set	0.0001474	60	0.003015	116	Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad GENTILE_UV_RESPONSE_CLUSTER_D4	View Gene Set	0.0001514	49	0.003069	118	Cluster d4: genes progressively down-regulated in WS1 cells (fibroblast) through 12 h after irradiation with high dose UV-C.	www.broad.mit.e...
Broad SEIDEN_ONCOGENESIS_BY_MET	View Gene Set	0.0001528	83	0.003072	119	Genes changed in xenograft tumors formed by DLD-1 or DKO-4 cells (colon cancer) overexpressing MET [Gene ID=4233].	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP	View Gene Set	0.0001711	220	0.003411	120	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors.	www.broad.mit.e...
Broad KALMA_E2F1_TARGETS	View Gene Set	0.0001895	11	0.003745	121	DNA replication genes up-regulated in a Rat-1a cell line (fibroblast) by expression of E2F1 [Gene ID=1869].	www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN	View Gene Set	0.0001936	111	0.003795	122	Genes down-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors.	www.broad.mit.e...
Broad SEMBA_FHIT_TARGETS_DN	View Gene Set	0.00024	10	0.004667	123	Genes down-regulated in H1299 cells (non-small cell lung cancer NSCLC) expressing the Y144F mutant form of FHIT [Gene ID=2272].	www.broad.mit.e...
Broad TANG_SENESCENCE_TP53_TARGETS_DN	View Gene Set	0.0002917	40	0.005626	124	Genes down-regulated in WI-38 cells (senescent primary fibroblasts) after inactivation of TP53 [Gene ID=7157] by GSE56 polypeptide.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP	View Gene Set	0.0003112	52	0.005955	125	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G23 defined by unsupervised clustering.	www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP	View Gene Set	0.0003139	100	0.005958	126	Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959].	www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN	View Gene Set	0.0003792	15	0.007142	127	Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors.	www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION	View Gene Set	0.0003886	154	0.007262	128	Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population.	www.broad.mit.e...
Broad DE_YY1_TARGETS_DN	View Gene Set	0.0004127	90	0.007652	129	Genes down-regulated in SaOS-2 cells (osteosarcoma) upon knockdown of YY1 [Gene ID=7528] by RNAi.	www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_DN	View Gene Set	0.000416	200	0.007654	130	Genes down-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490].	www.broad.mit.e...
Broad WU_APOPTOSIS_BY_CDKN1A_VIA_TP53	View Gene Set	0.0004281	36	0.007816	131	Genes downstream of both CDKN1A and TP53 [Gene ID=1026 7157] in 2774qw1 cells (ovarian cancer).	www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_UP	View Gene Set	0.000433	74	0.007847	132	Genes up-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones.	www.broad.mit.e...
Broad WANG_CLIM2_TARGETS_DN	View Gene Set	0.0004368	166	0.007856	133	Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express a dominant negative form of CLIM2 [Gene ID=8861] by a Tet Off system.	www.broad.mit.e...
Broad CHANG_CORE_SERUM_RESPONSE_UP	View Gene Set	0.0004787	66	0.008546	134	Up-regulated genes in the canonical gene expression signature of the fibroblast core serum response (CSR) defined by the Stanford group.	www.broad.mit.e...
Broad MEINHOLD_OVARIAN_CANCER_LOW_GRADE_DN	View Gene Set	0.000538	18	0.009527	135	Genes down-regulated in low grade (LMP and G1) serous ovarian carcinomas vs the higher grade invasive tumors (G2 and G3).	www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_A_DN	View Gene Set	0.0005417	17	0.009527	135	Genes down-regulated in the luminal A subtype of breast cancer.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK	View Gene Set	0.0005541	100	0.009674	137	Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature.	www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE	View Gene Set	0.0005692	54	0.009866	138	Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER	View Gene Set	0.0005914	167	0.01018	139	Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES	View Gene Set	0.0006024	128	0.01029	140	Genes involved in DNA replication compiled manually by the authors.	www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN	View Gene Set	0.0006347	53	0.01069	141	Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019].	www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP	View Gene Set	0.0006321	127	0.01069	141	Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database.	www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN	View Gene Set	0.0007037	123	0.01177	143	Genes highly expressed in hepatocellular carcinoma with poor survival.	www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN	View Gene Set	0.0007838	66	0.01302	144	Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector.	www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP	View Gene Set	0.0008473	915	0.01398	145	Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples.	www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN	View Gene Set	0.0008676	104	0.01421	146	Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years).	www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	View Gene Set	0.0009015	639	0.01467	147	Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts.	www.broad.mit.e...
Broad DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER	View Gene Set	0.00098	91	0.01584	148	The lung adenocarcinoma TSP (tumor sequencing project) genes showing strong correlation between DNA copy number variation and gene expression.	www.broad.mit.e...
Broad CHOI_ATL_STAGE_PREDICTOR	View Gene Set	0.001012	33	0.01614	149	Genes used to predict the clinical stages of acute T-cell leukemia (ATL): chronic vs acute.	www.broad.mit.e...
Broad LIN_MELANOMA_COPY_NUMBER_UP	View Gene Set	0.001011	65	0.01614	149	Candidate genes in significant regions of chromosomal copy number gains in a panel of melanoma samples.	www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN	View Gene Set	0.001046	148	0.01647	151	Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi.	www.broad.mit.e...
Broad GLINSKY_CANCER_DEATH_UP	View Gene Set	0.001046	6	0.01647	151	Genes whose over-expression is associated with the risk of death in multiple cancer types	www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP	View Gene Set	0.001158	532	0.0181	153	Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors.	www.broad.mit.e...
Broad HONRADO_BREAST_CANCER_BRCA1_VS_BRCA2	View Gene Set	0.001221	10	0.01897	154	Genes distinguishing between breast cancer tumors bearing mutations in BRCA1 [Gene ID=672] and those with mutated BRCA2 [Gene ID=675].	www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL	View Gene Set	0.001289	109	0.01989	155	Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples.	www.broad.mit.e...
Broad SLEBOS_HEAD_AND_NECK_CANCER_WITH_HPV_UP	View Gene Set	0.001535	72	0.02353	156	Genes up-regulated in head and neck squamous cell carcinoma (HNSCC) samples positive for HPV compared to the HPV-negative tumors.	www.broad.mit.e...
Broad NOUZOVA_TRETINOIN_AND_H4_ACETYLATION	View Gene Set	0.001552	124	0.02365	157	Genes whose CpG islands showed greatly increased histone H4 acetylation in NB4 cells (acute promyelocytic leukemia APL) upon treatment with tretinoin [PubChem=5538].	www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_14HR_DN	View Gene Set	0.001569	289	0.02376	158	Genes down-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 14 h time point that were not down-regulated at the previous time point 12 h.	www.broad.mit.e...
Broad GENTILE_UV_HIGH_DOSE_DN	View Gene Set	0.001658	240	0.02494	159	Selected genes down-regulated in WS1 (fibroblast) in response to irradiation with high dose UV-C.	www.broad.mit.e...
Broad GAZDA_DIAMOND_BLACKFAN_ANEMIA_PROGENITOR_DN	View Gene Set	0.001676	61	0.02505	160	Genes down-regulated in common hematopoietic progenitor cells isolated from bone marrow of patients with Diamond-Blackfan anemia (DBA) and mutated RPS19 [Gene ID=6223].	www.broad.mit.e...
Broad HOFMANN_CELL_LYMPHOMA_UP	View Gene Set	0.001954	42	0.02886	161	Genes up-regulated in lymph nodes from patients with mantle cell lymphoma (MCL) compared to the non-malignant hyperplastic lymph nodes.	www.broad.mit.e...
Broad VERNELL_RETINOBLASTOMA_PATHWAY_UP	View Gene Set	0.001948	39	0.02886	161	Cluster 1: genes up-regulated by RB1 [Gene ID=5925] CDNK2A [Gene ID=1029] and one of the E2Fs (E2F1 E2F2 or E2F3 [Gene ID=1869 1870 1871]).	www.broad.mit.e...
Broad SARRIO_EPITHELIAL_MESENCHYMAL_TRANSITION_UP	View Gene Set	0.002161	16	0.03171	163	Genes up-regulated in MCF10A cells (breast cancer) grown at low (mesenchymal phenotype) compared to those grown at high (epithelial basal-like phenotype) confluency.	www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP	View Gene Set	0.002279	427	0.03324	164	Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi.	www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_UP	View Gene Set	0.002384	116	0.03456	165	Genes up-regulated in transformed NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845]) vs normal cells.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17	View Gene Set	0.002576	165	0.03711	166	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17.	www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1	View Gene Set	0.002705	491	0.03874	167	The 'group 1 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064].	www.broad.mit.e...
Broad IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR	View Gene Set	0.002733	100	0.03892	168	Genes in the expression cluster 'Early Progenitors Shared': up-regulated in hematopoietic progenitors from adult bone marrow and from fetal liver.	www.broad.mit.e...
Broad ZHAN_VARIABLE_EARLY_DIFFERENTIATION_GENES_DN	View Gene Set	0.003219	26	0.04556	169	The vEDG set: most variable early differentiation genes (EDG) with similar expression patterns in tonsil B lymphocytes (TBC) and multiple myeloma (MM) cells compared to the plasma cells from tonsil (TPC) and bone marrow (BPC).	www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP	View Gene Set	0.003552	806	0.04997	170	Genes up-regulated in liver tumor compared to the normal adjacent tissue.	www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad BIOCARTA_DNAFRAGMENT_PATHWAY	View Gene Set	0.000434	10	0.03139	1	Apoptotic DNA fragmentation and tissue homeostasis	www.broad.mit.e...
Broad BIOCARTA_RB_PATHWAY	View Gene Set	0.0004111	13	0.03139	1	RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage	www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY	View Gene Set	0.0003034	10	0.03139	1	Role of Ran in mitotic spindle regulation	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KEGG_CELL_CYCLE	View Gene Set	1.735e-07	128	3.226e-05	1	Cell cycle	www.broad.mit.e...
Broad KEGG_SPLICEOSOME	View Gene Set	4.49e-07	118	4.176e-05	2	Spliceosome	www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION	View Gene Set	6.586e-06	59	0.0004083	3	RNA degradation	www.broad.mit.e...
Broad KEGG_DNA_REPLICATION	View Gene Set	3.701e-05	36	0.001721	4	DNA replication	www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS	View Gene Set	0.0005304	138	0.01973	5	Ubiquitin mediated proteolysis	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad REACTOME_MITOTIC_M_M_G1_PHASES	View Gene Set	8.651e-13	157	3.72e-10	1	Genes involved in Mitotic M-M/G1 phases	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC	View Gene Set	6.994e-11	306	1.035e-08	2	Genes involved in Cell Cycle Mitotic	www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE	View Gene Set	7.221e-11	92	1.035e-08	2	Genes involved in Mitotic Prometaphase	www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	View Gene Set	4.815e-10	128	5.176e-08	4	Genes involved in Processing of Capped Intron-Containing Pre-mRNA	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING	View Gene Set	1.398e-09	97	1.202e-07	5	Genes involved in mRNA Splicing	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA	View Gene Set	1.531e-07	95	1.097e-05	6	Genes involved in Metabolism of RNA	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS	View Gene Set	2.148e-07	110	1.32e-05	7	Genes involved in Cell Cycle Checkpoints	www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS	View Gene Set	4.547e-07	124	2.444e-05	8	Genes involved in Elongation and Processing of Capped Transcripts	www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT	View Gene Set	7.993e-07	142	3.819e-05	9	Genes involved in Formation and Maturation of mRNA Transcript	www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION	View Gene Set	7.804e-06	415	0.0003356	10	Genes involved in Gene Expression	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE	View Gene Set	1.458e-05	71	0.0005699	11	Genes involved in Regulation of APC/C activators between G1/S and early anaphase	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA	View Gene Set	2.166e-05	45	0.0007762	12	Genes involved in Metabolism of mRNA	www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA	View Gene Set	3.902e-05	21	0.001291	13	Genes involved in Deadenylation of mRNA	www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION	View Gene Set	6.871e-05	76	0.00197	14	Genes involved in DNA Replication Pre-Initiation	www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION	View Gene Set	6.723e-05	102	0.00197	14	Genes involved in G1/S Transition	www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A	View Gene Set	8.262e-05	63	0.00222	16	Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A	www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX	View Gene Set	9.981e-05	18	0.002482	17	Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex	www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING	View Gene Set	0.0001039	25	0.002482	17	Genes involved in mRNA 3-end processing	www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS	View Gene Set	0.0001225	43	0.002772	19	Genes involved in G2/M Checkpoints	www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC	View Gene Set	0.0002127	17	0.004574	20	Genes involved in Phosphorylation of the APC/C	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT	View Gene Set	0.0003889	42	0.007963	21	Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript	www.broad.mit.e...
Broad REACTOME_S_PHASE	View Gene Set	0.0004353	103	0.008508	22	Genes involved in S Phase	www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA	View Gene Set	0.0004714	89	0.008814	23	Genes involved in Synthesis of DNA	www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC	View Gene Set	0.0007048	57	0.01243	24	Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C	www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY	View Gene Set	0.0007228	50	0.01243	24	Genes involved in snRNP Assembly	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX	View Gene Set	0.001155	30	0.01911	26	Genes involved in Activation of the pre-replicative complex	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS	View Gene Set	0.001363	37	0.02144	27	Genes involved in Activation of ATR in response to replication stress	www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION	View Gene Set	0.001396	61	0.02144	27	Genes involved in M/G1 Transition	www.broad.mit.e...
Broad REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B	View Gene Set	0.001717	18	0.02546	29	Genes involved in APC/C:Cdc20 mediated degradation of Cyclin B	www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION	View Gene Set	0.001953	31	0.02799	30	Genes involved in DNA strand elongation	www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR	View Gene Set	0.002232	21	0.03096	31	Genes involved in Double-Strand Break Repair	www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS	View Gene Set	0.003004	120	0.03914	32	Genes involved in Host Interactions of HIV factors	www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN	View Gene Set	0.002991	30	0.03914	32	Genes involved in Nuclear import of Rev protein	www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN	View Gene Set	0.003527	63	0.04461	34	Genes involved in Orc1 removal from chromatin	www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53	View Gene Set	0.003932	46	0.04831	35	Genes involved in Stabilization of p53	www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA	View Gene Set	0.004177	31	0.04855	36	Genes involved in Rev-mediated nuclear export of HIV-1 RNA	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS	View Gene Set	0.004174	29	0.04855	36	Genes involved in Transport of Ribonucleoproteins into the Host Nucleus	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad ATACTGT MIR-144	View Gene Set	3.582e-06	173	0.0007917	1	Targets of MicroRNA ATACTGT MIR-144	www.broad.mit.e... MIR-144...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad GCCATNTTG_V$YY1_Q6	View Gene Set	1.371e-14	289	8.429e-12	1	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad V$E2F1_Q6	View Gene Set	1.51e-08	167	4.644e-06	2	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$NFMUE1_Q6	View Gene Set	2.896e-08	175	5.938e-06	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q6	View Gene Set	5.894e-08	165	9.062e-06	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q4	View Gene Set	3.979e-07	166	4.895e-05	5	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad KCCGNSWTTT_UNKNOWN	View Gene Set	4.91e-07	76	5.033e-05	6	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KCCGNSWTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGCNKCCATNK_UNKNOWN	View Gene Set	8.75e-07	84	7.688e-05	7	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNKCCATNK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$YY1_02	View Gene Set	1.03e-06	168	7.92e-05	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNCGGCCATCTTGNCTSNW which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad TAANNYSGCG_UNKNOWN	View Gene Set	1.88e-06	60	0.0001285	9	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TAANNYSGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_02	View Gene Set	2.603e-06	169	0.0001601	10	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q6_01	View Gene Set	3.212e-06	177	0.0001796	11	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F1_Q4_01	View Gene Set	3.699e-06	167	0.0001896	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP1_01	View Gene Set	4.817e-06	169	0.0001975	13	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP2_01	View Gene Set	4.817e-06	169	0.0001975	13	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F4DP2_01	View Gene Set	4.817e-06	169	0.0001975	13	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$YY1_Q6	View Gene Set	5.17e-06	166	0.0001987	16	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad V$E2F_Q3_01	View Gene Set	1.57e-05	171	0.0005432	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01	View Gene Set	1.59e-05	122	0.0005432	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F_Q6_01	View Gene Set	3.819e-05	167	0.001236	19	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F4DP1_01	View Gene Set	4.041e-05	174	0.001243	20	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q4_01	View Gene Set	9.415e-05	171	0.002757	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6	View Gene Set	0.0001396	580	0.003901	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1	www.broad.mit.e...
Broad V$E2F1DP1RB_01	View Gene Set	0.0001473	168	0.00394	23	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F1_Q3	View Gene Set	0.0001712	176	0.004387	24	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad GCGSCMNTTT_UNKNOWN	View Gene Set	0.0002715	49	0.00668	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGSCMNTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q4	View Gene Set	0.0003474	178	0.008217	26	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN	View Gene Set	0.0003886	130	0.008852	27	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q3	View Gene Set	0.0005122	162	0.01125	28	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad AAGWWRNYGGC_UNKNOWN	View Gene Set	0.0005818	85	0.01234	29	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AAGWWRNYGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad KMCATNNWGGA_UNKNOWN	View Gene Set	0.000696	60	0.01427	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KMCATNNWGGA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad CRGAARNNNNCGA_UNKNOWN	View Gene Set	0.0007677	34	0.01475	31	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CRGAARNNNNCGA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GATGKMRGCG_UNKNOWN	View Gene Set	0.0007453	47	0.01475	31	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATGKMRGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad RRCCGTTA_UNKNOWN	View Gene Set	0.001011	53	0.01884	33	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RRCCGTTA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$YY1_01	View Gene Set	0.001185	190	0.02143	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNCCATNTWNNNWN which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad KTGGYRSGAA_UNKNOWN	View Gene Set	0.001327	53	0.02333	35	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KTGGYRSGAA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad ACAWNRNSRCGG_UNKNOWN	View Gene Set	0.001439	50	0.02458	36	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWNRNSRCGG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_03	View Gene Set	0.00186	171	0.03091	37	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad TGCGCANK_UNKNOWN	View Gene Set	0.002213	361	0.03581	38	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGCGCANK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$POU3F2_01	View Gene Set	0.002708	82	0.04271	39	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif ATGMATWWATTCAT which matches annotation for POU3F2: POU domain class 3 transcription factor 2	www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad GNF2_CCNA2	View Gene Set	3.047e-22	62	1.301e-19	1	Neighborhood of CCNA2	www.broad.mit.e...
Broad GNF2_SMC4L1	View Gene Set	4.281e-21	75	9.14e-19	2	Neighborhood of SMC4L1	www.broad.mit.e...
Broad GNF2_CCNB2	View Gene Set	2.276e-20	53	3.24e-18	3	Neighborhood of CCNB2	www.broad.mit.e...
Broad GNF2_RRM1	View Gene Set	6.561e-20	82	7.004e-18	4	Neighborhood of RRM1	www.broad.mit.e...
Broad GNF2_CDC20	View Gene Set	1.113e-19	52	9.503e-18	5	Neighborhood of CDC20	www.broad.mit.e...
Broad GNF2_PCNA	View Gene Set	4.671e-19	62	3.325e-17	6	Neighborhood of PCNA	www.broad.mit.e...
Broad GNF2_HMMR	View Gene Set	9.41e-19	43	5.74e-17	7	Neighborhood of HMMR	www.broad.mit.e...
Broad GNF2_CDC2	View Gene Set	5.402e-18	56	2.883e-16	8	Neighborhood of CDC2	www.broad.mit.e...
Broad GNF2_CENPF	View Gene Set	5.385e-17	56	2.555e-15	9	Neighborhood of CENPF	www.broad.mit.e...
Broad GNF2_DEK	View Gene Set	2.836e-16	45	1.148e-14	10	Neighborhood of DEK	www.broad.mit.e...
Broad GNF2_PA2G4	View Gene Set	2.958e-16	73	1.148e-14	10	Neighborhood of PA2G4	www.broad.mit.e...
Broad MORF_HDAC2	View Gene Set	1.885e-15	256	6.707e-14	12	Neighborhood of HDAC2	www.broad.mit.e...
Broad GNF2_RFC4	View Gene Set	3.094e-15	57	1.016e-13	13	Neighborhood of RFC4	www.broad.mit.e...
Broad GNF2_MCM4	View Gene Set	4.027e-15	50	1.228e-13	14	Neighborhood of MCM4	www.broad.mit.e...
Broad GNF2_RRM2	View Gene Set	5.914e-15	36	1.683e-13	15	Neighborhood of RRM2	www.broad.mit.e...
Broad GNF2_FEN1	View Gene Set	6.638e-15	49	1.771e-13	16	Neighborhood of FEN1	www.broad.mit.e...
Broad GNF2_TTK	View Gene Set	1.753e-14	34	4.404e-13	17	Neighborhood of TTK	www.broad.mit.e...
Broad GNF2_ESPL1	View Gene Set	2.416e-14	35	5.732e-13	18	Neighborhood of ESPL1	www.broad.mit.e...
Broad GNF2_CKS2	View Gene Set	2.572e-14	45	5.78e-13	19	Neighborhood of CKS2	www.broad.mit.e...
Broad GNF2_BUB1B	View Gene Set	4.024e-14	46	8.59e-13	20	Neighborhood of BUB1B	www.broad.mit.e...
Broad GNF2_MCM5	View Gene Set	5.223e-14	51	1.062e-12	21	Neighborhood of MCM5	www.broad.mit.e...
Broad GNF2_CENPE	View Gene Set	6.486e-13	37	1.259e-11	22	Neighborhood of CENPE	www.broad.mit.e...
Broad MORF_DEK	View Gene Set	7.564e-13	229	1.404e-11	23	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_BUB3	View Gene Set	8.054e-13	256	1.433e-11	24	Neighborhood of BUB3	www.broad.mit.e...
Broad GNF2_APEX1	View Gene Set	2.333e-12	72	3.984e-11	25	Neighborhood of APEX1	www.broad.mit.e...
Broad GNF2_RFC3	View Gene Set	5.617e-12	38	9.225e-11	26	Neighborhood of RFC3	www.broad.mit.e...
Broad MORF_ACP1	View Gene Set	6.59e-12	178	1.042e-10	27	Neighborhood of ACP1	www.broad.mit.e...
Broad GNF2_HAT1	View Gene Set	1.073e-11	45	1.599e-10	28	Neighborhood of HAT1	www.broad.mit.e...
Broad GNF2_MKI67	View Gene Set	1.086e-11	26	1.599e-10	28	Neighborhood of MKI67	www.broad.mit.e...
Broad MORF_PCNA	View Gene Set	1.504e-11	71	2.141e-10	30	Neighborhood of PCNA	www.broad.mit.e...
Broad MORF_PRKDC	View Gene Set	1.818e-11	173	2.504e-10	31	Neighborhood of PRKDC	www.broad.mit.e...
Broad MORF_BUB1	View Gene Set	2.346e-11	49	3.131e-10	32	Neighborhood of BUB1	www.broad.mit.e...
Broad GNF2_HDAC1	View Gene Set	3.615e-11	85	4.678e-10	33	Neighborhood of HDAC1	www.broad.mit.e...
Broad GNF2_SMC2L1	View Gene Set	4.082e-11	30	5.127e-10	34	Neighborhood of SMC2L1	www.broad.mit.e...
Broad MORF_RFC4	View Gene Set	5.391e-11	137	6.577e-10	35	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_BUB1B	View Gene Set	8.325e-11	61	9.875e-10	36	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_RAD21	View Gene Set	9.56e-11	157	1.103e-09	37	Neighborhood of RAD21	www.broad.mit.e...
Broad MORF_UBE2I	View Gene Set	2.185e-10	208	2.455e-09	38	Neighborhood of UBE2I	www.broad.mit.e...
Broad MORF_HAT1	View Gene Set	3.165e-10	155	3.466e-09	39	Neighborhood of HAT1	www.broad.mit.e...
Broad GNF2_ANP32B	View Gene Set	4.634e-10	29	4.947e-09	40	Neighborhood of ANP32B	www.broad.mit.e...
Broad GNF2_H2AFX	View Gene Set	7.208e-10	28	7.507e-09	41	Neighborhood of H2AFX	www.broad.mit.e...
Broad GNF2_CKS1B	View Gene Set	1.092e-09	36	1.111e-08	42	Neighborhood of CKS1B	www.broad.mit.e...
Broad MORF_RAD23A	View Gene Set	1.301e-09	316	1.292e-08	43	Neighborhood of RAD23A	www.broad.mit.e...
Broad GNF2_KPNB1	View Gene Set	2.063e-09	52	2.002e-08	44	Neighborhood of KPNB1	www.broad.mit.e...
Broad GNF2_RAN	View Gene Set	2.252e-09	78	2.137e-08	45	Neighborhood of RAN	www.broad.mit.e...
Broad MORF_FBL	View Gene Set	5.6e-09	121	5.198e-08	46	Neighborhood of FBL	www.broad.mit.e...
Broad GNF2_TDG	View Gene Set	1.219e-08	23	1.108e-07	47	Neighborhood of TDG	www.broad.mit.e...
Broad MORF_SOD1	View Gene Set	1.416e-08	247	1.26e-07	48	Neighborhood of SOD1	www.broad.mit.e...
Broad MORF_DNMT1	View Gene Set	1.825e-08	105	1.59e-07	49	Neighborhood of DNMT1	www.broad.mit.e...
Broad MORF_GNB1	View Gene Set	2.963e-08	276	2.531e-07	50	Neighborhood of GNB1	www.broad.mit.e...
Broad GNF2_BUB1	View Gene Set	3.466e-08	25	2.902e-07	51	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_ANP32B	View Gene Set	3.562e-08	174	2.925e-07	52	Neighborhood of ANP32B	www.broad.mit.e...
Broad GNF2_MSH2	View Gene Set	4.862e-08	26	3.917e-07	53	Neighborhood of MSH2	www.broad.mit.e...
Broad GNF2_DENR	View Gene Set	5.202e-08	39	4.113e-07	54	Neighborhood of DENR	www.broad.mit.e...
Broad MORF_ESPL1	View Gene Set	8.334e-08	58	6.47e-07	55	Neighborhood of ESPL1	www.broad.mit.e...
Broad MORF_XRCC5	View Gene Set	8.997e-08	210	6.86e-07	56	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_SP3	View Gene Set	1.241e-07	69	9.299e-07	57	Neighborhood of SP3	www.broad.mit.e...
Broad MORF_SKP1A	View Gene Set	1.894e-07	175	1.395e-06	58	Neighborhood of SKP1A	www.broad.mit.e...
Broad MORF_EIF3S2	View Gene Set	3.321e-07	220	2.404e-06	59	Neighborhood of EIF3S2	www.broad.mit.e...
Broad GNF2_BNIP2	View Gene Set	4.407e-07	31	3.137e-06	60	Neighborhood of BNIP2	www.broad.mit.e...
Broad GNF2_FBL	View Gene Set	5.643e-07	119	3.95e-06	61	Neighborhood of FBL	www.broad.mit.e...
Broad MORF_CDC16	View Gene Set	9.171e-07	67	6.216e-06	62	Neighborhood of CDC16	www.broad.mit.e...
Broad GCM_APEX1	View Gene Set	9.042e-07	102	6.216e-06	62	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_G22P1	View Gene Set	1.023e-06	145	6.824e-06	64	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_RAD54L	View Gene Set	1.205e-06	94	7.917e-06	65	Neighborhood of RAD54L	www.broad.mit.e...
Broad MORF_SNRP70	View Gene Set	1.224e-06	50	7.919e-06	66	Neighborhood of SNRP70	www.broad.mit.e...
Broad GNF2_XRCC5	View Gene Set	1.287e-06	61	8.205e-06	67	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_UNG	View Gene Set	1.359e-06	65	8.535e-06	68	Neighborhood of UNG	www.broad.mit.e...
Broad MORF_UBE2N	View Gene Set	1.43e-06	79	8.848e-06	69	Neighborhood of UBE2N	www.broad.mit.e...
Broad GNF2_RPA1	View Gene Set	1.483e-06	20	9.047e-06	70	Neighborhood of RPA1	www.broad.mit.e...
Broad MORF_AATF	View Gene Set	1.804e-06	179	1.085e-05	71	Neighborhood of AATF	www.broad.mit.e...
Broad MORF_CCNF	View Gene Set	1.912e-06	65	1.134e-05	72	Neighborhood of CCNF	www.broad.mit.e...
Broad MORF_FEN1	View Gene Set	2.019e-06	58	1.138e-05	73	Neighborhood of FEN1	www.broad.mit.e...
Broad MORF_SMC1L1	View Gene Set	2.005e-06	47	1.138e-05	73	Neighborhood of SMC1L1	www.broad.mit.e...
Broad MORF_CSNK2B	View Gene Set	2.01e-06	256	1.138e-05	73	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_PPP1CC	View Gene Set	2.026e-06	150	1.138e-05	73	Neighborhood of PPP1CC	www.broad.mit.e...
Broad GNF2_MLH1	View Gene Set	2.224e-06	36	1.233e-05	77	Neighborhood of MLH1	www.broad.mit.e...
Broad MORF_RRM1	View Gene Set	3.12e-06	90	1.708e-05	78	Neighborhood of RRM1	www.broad.mit.e...
Broad GNF2_ELAC2	View Gene Set	3.876e-06	32	2.095e-05	79	Neighborhood of ELAC2	www.broad.mit.e...
Broad GCM_MYST2	View Gene Set	4.223e-06	138	2.254e-05	80	Neighborhood of MYST2	www.broad.mit.e...
Broad MORF_PSMC1	View Gene Set	4.297e-06	162	2.265e-05	81	Neighborhood of PSMC1	www.broad.mit.e...
Broad MORF_RAD23B	View Gene Set	5.033e-06	159	2.621e-05	82	Neighborhood of RAD23B	www.broad.mit.e...
Broad MORF_DAP3	View Gene Set	6.012e-06	175	3.093e-05	83	Neighborhood of DAP3	www.broad.mit.e...
Broad MORF_PPP2CA	View Gene Set	6.394e-06	110	3.212e-05	84	Neighborhood of PPP2CA	www.broad.mit.e...
Broad GCM_MAX	View Gene Set	6.342e-06	28	3.212e-05	84	Neighborhood of MAX	www.broad.mit.e...
Broad MORF_PSMC2	View Gene Set	7.01e-06	100	3.481e-05	86	Neighborhood of PSMC2	www.broad.mit.e...
Broad MORF_MSH2	View Gene Set	8.84e-06	52	4.339e-05	87	Neighborhood of MSH2	www.broad.mit.e...
Broad GNF2_PPP6C	View Gene Set	8.959e-06	33	4.347e-05	88	Neighborhood of PPP6C	www.broad.mit.e...
Broad MORF_ERH	View Gene Set	1.037e-05	103	4.976e-05	89	Neighborhood of ERH	www.broad.mit.e...
Broad GCM_CBFB	View Gene Set	1.22e-05	59	5.786e-05	90	Neighborhood of CBFB	www.broad.mit.e...
Broad GNF2_RBBP6	View Gene Set	1.248e-05	54	5.857e-05	91	Neighborhood of RBBP6	www.broad.mit.e...
Broad MORF_PRKAG1	View Gene Set	1.955e-05	202	9.072e-05	92	Neighborhood of PRKAG1	www.broad.mit.e...
Broad MORF_CTBP1	View Gene Set	2.135e-05	149	9.801e-05	93	Neighborhood of CTBP1	www.broad.mit.e...
Broad MORF_CCNI	View Gene Set	2.296e-05	76	0.0001043	94	Neighborhood of CCNI	www.broad.mit.e...
Broad GCM_DDX5	View Gene Set	3.063e-05	52	0.0001377	95	Neighborhood of DDX5	www.broad.mit.e...
Broad MORF_EIF4A2	View Gene Set	3.184e-05	120	0.0001416	96	Neighborhood of EIF4A2	www.broad.mit.e...
Broad GNF2_DAP3	View Gene Set	3.223e-05	98	0.0001419	97	Neighborhood of DAP3	www.broad.mit.e...
Broad MORF_NPM1	View Gene Set	3.322e-05	152	0.0001447	98	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_RAF1	View Gene Set	3.383e-05	94	0.0001459	99	Neighborhood of RAF1	www.broad.mit.e...
Broad MORF_EI24	View Gene Set	4.466e-05	136	0.0001888	100	Neighborhood of EI24	www.broad.mit.e...
Broad GNF2_MSH6	View Gene Set	4.458e-05	30	0.0001888	100	Neighborhood of MSH6	www.broad.mit.e...
Broad MORF_MTA1	View Gene Set	4.937e-05	95	0.0002067	102	Neighborhood of MTA1	www.broad.mit.e...
Broad MORF_HDAC1	View Gene Set	5.601e-05	222	0.0002322	103	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_RAN	View Gene Set	5.838e-05	242	0.0002397	104	Neighborhood of RAN	www.broad.mit.e...
Broad GCM_ANP32B	View Gene Set	7.595e-05	32	0.0003088	105	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_EIF3S6	View Gene Set	0.0001002	108	0.0004036	106	Neighborhood of EIF3S6	www.broad.mit.e...
Broad MORF_GMPS	View Gene Set	0.0001021	48	0.0004076	107	Neighborhood of GMPS	www.broad.mit.e...
Broad MORF_BAG5	View Gene Set	0.0001331	48	0.0005215	108	Neighborhood of BAG5	www.broad.mit.e...
Broad MORF_CDC10	View Gene Set	0.000133	120	0.0005215	108	Neighborhood of CDC10	www.broad.mit.e...
Broad MORF_RPA1	View Gene Set	0.0001568	55	0.0006088	110	Neighborhood of RPA1	www.broad.mit.e...
Broad GCM_MLL	View Gene Set	0.000171	130	0.0006578	111	Neighborhood of MLL	www.broad.mit.e...
Broad MORF_RPA2	View Gene Set	0.0001875	170	0.0007148	112	Neighborhood of RPA2	www.broad.mit.e...
Broad MORF_DDB1	View Gene Set	0.0002028	220	0.0007665	113	Neighborhood of DDB1	www.broad.mit.e...
Broad GCM_UBE2N	View Gene Set	0.0002329	125	0.0008725	114	Neighborhood of UBE2N	www.broad.mit.e...
Broad MORF_TERF2IP	View Gene Set	0.0002736	99	0.001016	115	Neighborhood of TERF2IP	www.broad.mit.e...
Broad MORF_CUL1	View Gene Set	0.0002875	62	0.001058	116	Neighborhood of CUL1	www.broad.mit.e...
Broad MORF_CDK2	View Gene Set	0.0002915	63	0.001064	117	Neighborhood of CDK2	www.broad.mit.e...
Broad MORF_TERF1	View Gene Set	0.0003168	57	0.001147	118	Neighborhood of TERF1	www.broad.mit.e...
Broad MORF_RAC1	View Gene Set	0.0003509	196	0.001259	119	Neighborhood of RAC1	www.broad.mit.e...
Broad GCM_DFFA	View Gene Set	0.0003756	100	0.001337	120	Neighborhood of DFFA	www.broad.mit.e...
Broad GCM_DENR	View Gene Set	0.0004182	40	0.001476	121	Neighborhood of DENR	www.broad.mit.e...
Broad MORF_PPP1CA	View Gene Set	0.0004775	145	0.001671	122	Neighborhood of PPP1CA	www.broad.mit.e...
Broad MORF_SART1	View Gene Set	0.0005417	55	0.001881	123	Neighborhood of SART1	www.broad.mit.e...
Broad MORF_PTPN11	View Gene Set	0.000583	93	0.002008	124	Neighborhood of PTPN11	www.broad.mit.e...
Broad MORF_REV3L	View Gene Set	0.0006446	52	0.002184	125	Neighborhood of REV3L	www.broad.mit.e...
Broad MORF_SS18	View Gene Set	0.0006401	55	0.002184	125	Neighborhood of SS18	www.broad.mit.e...
Broad MORF_GSPT1	View Gene Set	0.0006852	41	0.002304	127	Neighborhood of GSPT1	www.broad.mit.e...
Broad GCM_PPP1CC	View Gene Set	0.0007203	47	0.002403	128	Neighborhood of PPP1CC	www.broad.mit.e...
Broad GNF2_NS	View Gene Set	0.0007766	35	0.002571	129	Neighborhood of NS	www.broad.mit.e...
Broad GCM_RAD21	View Gene Set	0.001008	30	0.003311	130	Neighborhood of RAD21	www.broad.mit.e...
Broad GCM_RBM8A	View Gene Set	0.001139	64	0.003714	131	Neighborhood of RBM8A	www.broad.mit.e...
Broad GNF2_G22P1	View Gene Set	0.00122	29	0.003945	132	Neighborhood of G22P1	www.broad.mit.e...
Broad GCM_RAB10	View Gene Set	0.001251	143	0.004017	133	Neighborhood of RAB10	www.broad.mit.e...
Broad GCM_HBP1	View Gene Set	0.001397	54	0.004451	134	Neighborhood of HBP1	www.broad.mit.e...
Broad GNF2_NPM1	View Gene Set	0.001416	57	0.004478	135	Neighborhood of NPM1	www.broad.mit.e...
Broad GCM_CSNK1A1	View Gene Set	0.001525	28	0.004789	136	Neighborhood of CSNK1A1	www.broad.mit.e...
Broad GCM_DPF2	View Gene Set	0.001589	32	0.004954	137	Neighborhood of DPF2	www.broad.mit.e...
Broad GCM_ACTG1	View Gene Set	0.001604	113	0.004964	138	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_MBD4	View Gene Set	0.001804	76	0.005536	139	Neighborhood of MBD4	www.broad.mit.e...
Broad MORF_PPP6C	View Gene Set	0.001815	88	0.005536	139	Neighborhood of PPP6C	www.broad.mit.e...
Broad GNF2_DDX5	View Gene Set	0.002067	54	0.006259	141	Neighborhood of DDX5	www.broad.mit.e...
Broad GCM_PPM1D	View Gene Set	0.002207	22	0.006589	142	Neighborhood of PPM1D	www.broad.mit.e...
Broad GNF2_CBFB	View Gene Set	0.002194	26	0.006589	142	Neighborhood of CBFB	www.broad.mit.e...
Broad GNF2_PAK2	View Gene Set	0.002632	27	0.007805	144	Neighborhood of PAK2	www.broad.mit.e...
Broad GCM_CHUK	View Gene Set	0.002992	61	0.00881	145	Neighborhood of CHUK	www.broad.mit.e...
Broad MORF_RFC1	View Gene Set	0.003789	98	0.01108	146	Neighborhood of RFC1	www.broad.mit.e...
Broad MORF_DEAF1	View Gene Set	0.003832	54	0.01113	147	Neighborhood of DEAF1	www.broad.mit.e...
Broad GCM_HDAC1	View Gene Set	0.003905	30	0.01127	148	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_PRDX3	View Gene Set	0.005074	79	0.01454	149	Neighborhood of PRDX3	www.broad.mit.e...
Broad MORF_ACTG1	View Gene Set	0.006127	134	0.01744	150	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_EIF4E	View Gene Set	0.006843	76	0.01935	151	Neighborhood of EIF4E	www.broad.mit.e...
Broad GCM_NF2	View Gene Set	0.007626	235	0.02142	152	Neighborhood of NF2	www.broad.mit.e...
Broad GNF2_SMC1L1	View Gene Set	0.007772	24	0.02169	153	Neighborhood of SMC1L1	www.broad.mit.e...
Broad GCM_SMARCC1	View Gene Set	0.007887	33	0.02187	154	Neighborhood of SMARCC1	www.broad.mit.e...
Broad MORF_BMPR2	View Gene Set	0.008259	47	0.02275	155	Neighborhood of BMPR2	www.broad.mit.e...
Broad GNF2_BUB3	View Gene Set	0.009351	22	0.02559	156	Neighborhood of BUB3	www.broad.mit.e...
Broad GCM_NUMA1	View Gene Set	0.009787	45	0.02662	157	Neighborhood of NUMA1	www.broad.mit.e...
Broad GNF2_TYK2	View Gene Set	0.01043	31	0.0282	158	Neighborhood of TYK2	www.broad.mit.e...
Broad MORF_BMI1	View Gene Set	0.01064	71	0.02858	159	Neighborhood of BMI1	www.broad.mit.e...
Broad MORF_PRKAR1A	View Gene Set	0.01101	133	0.02937	160	Neighborhood of PRKAR1A	www.broad.mit.e...
Broad GCM_BECN1	View Gene Set	0.01187	59	0.03149	161	Neighborhood of BECN1	www.broad.mit.e...
Broad MORF_RAB1A	View Gene Set	0.01218	179	0.03211	162	Neighborhood of RAB1A	www.broad.mit.e...
Broad MORF_PTEN	View Gene Set	0.01232	80	0.03226	163	Neighborhood of PTEN	www.broad.mit.e...
Broad MORF_PHB	View Gene Set	0.0129	112	0.03359	164	Neighborhood of PHB	www.broad.mit.e...
Broad GCM_GSTA4	View Gene Set	0.01299	57	0.03362	165	Neighborhood of GSTA4	www.broad.mit.e...
Broad GCM_ZNF198	View Gene Set	0.01329	98	0.0342	166	Neighborhood of ZNF198	www.broad.mit.e...
Broad MORF_PPP2R5E	View Gene Set	0.0138	76	0.03528	167	Neighborhood of PPP2R5E	www.broad.mit.e...
Broad MORF_BRCA1	View Gene Set	0.0147	242	0.03735	168	Neighborhood of BRCA1	www.broad.mit.e...
Broad GCM_NPM1	View Gene Set	0.01494	108	0.03775	169	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_ATRX	View Gene Set	0.01529	185	0.0381	170	Neighborhood of ATRX	www.broad.mit.e...
Broad MORF_AP3D1	View Gene Set	0.01517	119	0.0381	170	Neighborhood of AP3D1	www.broad.mit.e...
Broad GCM_PSME1	View Gene Set	0.01535	76	0.0381	170	Neighborhood of PSME1	www.broad.mit.e...
Broad GCM_GSPT1	View Gene Set	0.01622	129	0.04003	173	Neighborhood of GSPT1	www.broad.mit.e...
Broad MORF_RAP1A	View Gene Set	0.01851	122	0.04543	174	Neighborhood of RAP1A	www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad module_252	View Gene Set	4.653e-13	224	2.112e-10	1	Genes in module_252	www.broad.mit.e...
Broad module_98	View Gene Set	1.697e-12	375	2.836e-10	2	Genes in module_98	www.broad.mit.e...
Broad module_198	View Gene Set	1.874e-12	288	2.836e-10	2	Genes in module_198	www.broad.mit.e...
Broad module_54	View Gene Set	1.665e-10	242	1.889e-08	4	Genes in module_54	www.broad.mit.e...
Broad module_183	View Gene Set	1.256e-08	52	1.141e-06	5	Genes in module_183	www.broad.mit.e...
Broad module_8	View Gene Set	3.671e-06	403	0.0002778	6	Genes in module_8	www.broad.mit.e...
Broad module_403	View Gene Set	5.513e-06	44	0.0003576	7	Genes in module_403	www.broad.mit.e...
Broad module_17	View Gene Set	6.739e-06	351	0.0003824	8	Genes in module_17	www.broad.mit.e...
Broad module_57	View Gene Set	1.102e-05	54	0.0005559	9	Genes in module_57	www.broad.mit.e...
Broad module_158	View Gene Set	5.845e-05	41	0.002412	10	Genes in module_158	www.broad.mit.e...
Broad module_197	View Gene Set	5.721e-05	170	0.002412	10	Genes in module_197	www.broad.mit.e...
Broad module_352	View Gene Set	6.732e-05	17	0.002547	12	Genes in module_352	www.broad.mit.e...
Broad module_451	View Gene Set	9.624e-05	29	0.003361	13	Genes in module_451	www.broad.mit.e...
Broad module_125	View Gene Set	0.000113	42	0.003666	14	Genes in module_125	www.broad.mit.e...
Broad module_3	View Gene Set	0.000155	374	0.004691	15	Genes in module_3	www.broad.mit.e...
Broad module_337	View Gene Set	0.0002674	59	0.007586	16	Genes in module_337	www.broad.mit.e...
Broad module_315	View Gene Set	0.0004432	15	0.01184	17	Genes in module_315	www.broad.mit.e...
Broad module_18	View Gene Set	0.000495	434	0.01249	18	Genes in module_18	www.broad.mit.e...
Broad module_245	View Gene Set	0.0009168	26	0.02191	19	Genes in module_245	www.broad.mit.e...
Broad module_91	View Gene Set	0.00105	37	0.02384	20	Genes in module_91	www.broad.mit.e...
Broad module_278	View Gene Set	0.001289	34	0.02786	21	Genes in module_278	www.broad.mit.e...
Broad module_254	View Gene Set	0.001734	58	0.03422	22	Genes in module_254	www.broad.mit.e...
Broad module_320	View Gene Set	0.001663	19	0.03422	22	Genes in module_320	www.broad.mit.e...
Broad module_124	View Gene Set	0.001968	92	0.03723	24	Genes in module_124	www.broad.mit.e...
Broad module_457	View Gene Set	0.002071	9	0.0376	25	Genes in module_457	www.broad.mit.e...
Broad module_155	View Gene Set	0.002176	25	0.038	26	Genes in module_155	www.broad.mit.e...
Broad module_32	View Gene Set	0.002476	227	0.04163	27	Genes in module_32	www.broad.mit.e...
Broad module_28	View Gene Set	0.002627	32	0.04259	28	Genes in module_28	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	1.153e-12	1197	9.513e-10	1	Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE	View Gene Set	1.574e-11	148	4.328e-09	2	Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent.	www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE	View Gene Set	1.359e-11	83	4.328e-09	2	Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place.	www.broad.mit.e...
Broad MITOSIS	View Gene Set	7.076e-11	81	1.459e-08	4	Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother.	www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS	View Gene Set	1.038e-10	801	1.517e-08	5	Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad CELL_CYCLE_PROCESS	View Gene Set	1.103e-10	187	1.517e-08	5	Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad M_PHASE	View Gene Set	2.088e-10	111	2.461e-08	7	Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division.	www.broad.mit.e...
Broad CELL_CYCLE_PHASE	View Gene Set	1.213e-09	167	1.251e-07	8	Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad RNA_PROCESSING	View Gene Set	8.804e-08	147	8.07e-06	9	Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS	View Gene Set	1.99e-07	1623	1.642e-05	10	Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS	View Gene Set	2.483e-07	117	1.862e-05	11	Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.	www.broad.mit.e...
Broad RNA_SPLICING	View Gene Set	4.092e-07	73	2.813e-05	12	Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.	www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049	View Gene Set	1.527e-06	304	9.692e-05	13	Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.	www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION	View Gene Set	3.704e-06	660	0.0002183	14	Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.	www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	8.072e-06	601	0.000444	15	Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad TRANSCRIPTION	View Gene Set	1.307e-05	738	0.0006738	16	Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION	View Gene Set	1.677e-05	555	0.000814	17	Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS	View Gene Set	3.027e-05	625	0.001387	18	Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	3.199e-05	83	0.001389	19	Genes annotated by the GO term GO:0000122. Any process that stops prevents or reduces the frequency rate or extent of transcription from an RNA polymerase II promoter.	www.broad.mit.e...
Broad REGULATION_OF_MITOSIS	View Gene Set	3.688e-05	40	0.001521	20	Genes annotated by the GO term GO:0007088. Any process that modulates the frequency rate or extent of mitosis.	www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT	View Gene Set	4.281e-05	623	0.001655	21	Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION_DNA_DEPENDENT	View Gene Set	5.014e-05	127	0.001655	21	Genes annotated by the GO term GO:0045892. Any process that stops prevents or reduces the frequency rate or extent of DNA-dependent transcription.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION	View Gene Set	4.698e-05	185	0.001655	21	Genes annotated by the GO term GO:0016481. Any process that stops prevents or reduces the frequency rate or extent of transcription.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	5.014e-05	127	0.001655	21	Genes annotated by the GO term GO:0051253. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad SISTER_CHROMATID_SEGREGATION	View Gene Set	4.747e-05	17	0.001655	21	Genes annotated by the GO term GO:0000819. The process by which sister chromatids are organized and then physically separated and apportioned to two or more sets.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT	View Gene Set	5.839e-05	452	0.001853	26	Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription.	www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	6.555e-05	457	0.002003	27	Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad MITOTIC_SISTER_CHROMATID_SEGREGATION	View Gene Set	8.915e-05	16	0.002536	28	Genes annotated by the GO term GO:0000070. The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome composed of two sister chromatids aligns at the cell equator paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.	www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE	View Gene Set	8.77e-05	72	0.002536	28	Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin.	www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION	View Gene Set	9.569e-05	31	0.002631	30	Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets.	www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0001053	9	0.002802	31	Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	0.0001431	205	0.003689	32	Genes annotated by the GO term GO:0045934. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.0002937	285	0.007343	33	Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	0.0004184	767	0.01015	34	Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS	View Gene Set	0.0004646	253	0.01095	35	Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides.	www.broad.mit.e...
Broad VIRAL_INFECTIOUS_CYCLE	View Gene Set	0.0004898	32	0.01123	36	Genes annotated by the GO term GO:0019058. A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle decoding of genome information translation of viral mRNA by host ribosomes genome replication and assembly and release of viral particles containing the genome.	www.broad.mit.e...
Broad STEROID_HORMONE_RECEPTOR_SIGNALING_PATHWAY	View Gene Set	0.000556	20	0.01184	37	Genes annotated by the GO term GO:0030518. Any series of molecular signals generated as a consequence of a steroid hormone binding to its receptor.	www.broad.mit.e...
Broad INTRACELLULAR_RECEPTOR_MEDIATED_SIGNALING_PATHWAY	View Gene Set	0.000556	21	0.01184	37	Genes annotated by the GO term GO:0030522. Any series of molecular signals initiated by a ligand entering the target cell where it binds to an intracellular receptor.	www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS	View Gene Set	0.0005599	779	0.01184	37	Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism.	www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0007	10	0.01444	40	Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart.	www.broad.mit.e...
Broad ANDROGEN_RECEPTOR_SIGNALING_PATHWAY	View Gene Set	0.0007664	12	0.01542	41	Genes annotated by the GO term GO:0030521. Any series of molecular signals generated as a consequence of an androgen binding to its receptor.	www.broad.mit.e...
Broad CHROMATIN_REMODELING	View Gene Set	0.0007983	23	0.01568	42	Genes annotated by the GO term GO:0006338. Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.	www.broad.mit.e...
Broad REGULATION_OF_VIRAL_REPRODUCTION	View Gene Set	0.0008481	12	0.01627	43	Genes annotated by the GO term GO:0050792. Any process that modulates the rate or extent of the viral life cycle the set of processes by which a virus reproduces and spreads among hosts.	www.broad.mit.e...
Broad VIRAL_REPRODUCTIVE_PROCESS	View Gene Set	0.0009432	36	0.01768	44	Genes annotated by the GO term GO:0022415. A reproductive process involved in viral reproduction. Usually this is by infection of a host cell replication of the viral genome and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently under particular circumstances 'complete' its life cycle.	www.broad.mit.e...
Broad PROTEIN_DNA_COMPLEX_ASSEMBLY	View Gene Set	0.001004	48	0.0184	45	Genes annotated by the GO term GO:0065004. The aggregation arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.	www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.001042	449	0.01869	46	Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).	www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY	View Gene Set	0.001413	59	0.0248	47	Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.	www.broad.mit.e...
Broad VIRAL_GENOME_REPLICATION	View Gene Set	0.001511	21	0.02596	48	Genes annotated by the GO term GO:0019079. Any process involved directly in viral genome replication including viral nucleotide metabolism.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY	View Gene Set	0.002255	74	0.03798	49	Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together.	www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEUS	View Gene Set	2.278e-18	1353	5.308e-16	1	Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent.	www.broad.mit.e...
Broad NUCLEAR_PART	View Gene Set	4.174e-15	543	4.863e-13	2	Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	www.broad.mit.e...
Broad CHROMOSOMAL_PART	View Gene Set	2.109e-10	95	1.638e-08	3	Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad CHROMOSOME	View Gene Set	1.251e-09	122	7.29e-08	4	Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION	View Gene Set	4.05e-09	31	1.887e-07	5	Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	6.485e-09	129	2.518e-07	6	Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules.	www.broad.mit.e...
Broad KINETOCHORE	View Gene Set	4.164e-08	25	1.386e-06	7	Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules.	www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART	View Gene Set	7.697e-08	1144	2.242e-06	8	Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX	View Gene Set	1.399e-07	914	3.621e-06	9	Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together.	www.broad.mit.e...
Broad ORGANELLE_PART	View Gene Set	1.567e-07	1149	3.652e-06	10	Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad ORGANELLE_LUMEN	View Gene Set	9.982e-07	434	1.938e-05	11	Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen.	www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN	View Gene Set	9.982e-07	434	1.938e-05	11	Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes.	www.broad.mit.e...
Broad NUCLEAR_LUMEN	View Gene Set	1.178e-06	365	2.111e-05	13	Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane.	www.broad.mit.e...
Broad NUCLEOPLASM	View Gene Set	1.353e-05	266	0.0002252	14	Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad CHROMATIN	View Gene Set	9.633e-05	35	0.001496	15	Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome.	www.broad.mit.e...
Broad SPLICEOSOME	View Gene Set	0.000108	44	0.001573	16	Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron.	www.broad.mit.e...
Broad NUCLEAR_PORE	View Gene Set	0.0002077	29	0.002846	17	Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined.	www.broad.mit.e...
Broad SPINDLE_MICROTUBULE	View Gene Set	0.000298	15	0.003825	18	Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.	www.broad.mit.e...
Broad PROTEIN_COMPLEX	View Gene Set	0.0003119	799	0.003825	18	Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad SPINDLE	View Gene Set	0.0003878	37	0.004518	20	Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.	www.broad.mit.e...
Broad ORGANELLAR_SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.0004821	11	0.004884	21	Genes annotated by the GO term GO:0000314. The smaller of the two subunits of an organellar ribosome.	www.broad.mit.e...
Broad MITOCHONDRIAL_SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.0004821	11	0.004884	21	Genes annotated by the GO term GO:0005763. The smaller of the two subunits of a mitochondrial ribosome.	www.broad.mit.e...
Broad SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.0004821	11	0.004884	21	Genes annotated by the GO term GO:0015935. The smaller of the two subunits of a ribosome.	www.broad.mit.e...
Broad PORE_COMPLEX	View Gene Set	0.00064	34	0.006213	24	Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids.	www.broad.mit.e...
Broad NUCLEOLUS	View Gene Set	0.000818	116	0.007624	25	Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE	View Gene Set	0.001607	48	0.0144	26	Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME	View Gene Set	0.001756	53	0.01516	27	Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad ENVELOPE	View Gene Set	0.001977	165	0.01588	28	Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers.	www.broad.mit.e...
Broad ORGANELLE_ENVELOPE	View Gene Set	0.001977	165	0.01588	28	Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes.	www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME	View Gene Set	0.002126	22	0.01598	30	Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle.	www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME	View Gene Set	0.002126	22	0.01598	30	Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes.	www.broad.mit.e...
Broad NUCLEOPLASM_PART	View Gene Set	0.002797	202	0.02037	32	Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	0.003359	9	0.02372	33	Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA.	www.broad.mit.e...
Broad CONDENSED_CHROMOSOME	View Gene Set	0.003754	32	0.0254	34	Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART	View Gene Set	0.003816	40	0.0254	34	Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells.	www.broad.mit.e...
Broad NUCLEAR_ENVELOPE	View Gene Set	0.004619	71	0.02989	36	Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space).	www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	0.004978	20	0.03126	37	Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs.	www.broad.mit.e...
Broad MEDIATOR_COMPLEX	View Gene Set	0.005098	18	0.03126	37	Genes annotated by the GO term GO:0000119. A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription.	www.broad.mit.e...
Broad NUCLEAR_UBIQUITIN_LIGASE_COMPLEX	View Gene Set	0.005784	11	0.03456	39	Genes annotated by the GO term GO:0000152. A ubiquitin ligase complex found in the nucleus.	www.broad.mit.e...
Broad RIBOSOME	View Gene Set	0.006188	39	0.03605	40	Genes annotated by the GO term GO:0005840. An intracellular organelle about 200 A in diameter consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits one large and one small each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients expressed in Svedberg units (symbol: S). Hence the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes eukaryotes mitochondria and chloroplasts have characteristically distinct ribosomal proteins.	www.broad.mit.e...
Broad NUCLEAR_CHROMATIN	View Gene Set	0.008365	14	0.04754	41	Genes annotated by the GO term GO:0000790. The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus.	www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad RNA_BINDING	View Gene Set	5.238e-08	236	2.074e-05	1	Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof.	www.broad.mit.e...
Broad TRANSCRIPTION_ACTIVATOR_ACTIVITY	View Gene Set	1.727e-07	169	3.419e-05	2	Genes annotated by the GO term GO:0016563. Any transcription regulator activity required for initiation or upregulation of transcription.	www.broad.mit.e...
Broad DNA_BINDING	View Gene Set	7.759e-07	587	0.0001024	3	Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid).	www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY	View Gene Set	1.495e-06	222	0.000148	4	Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself.	www.broad.mit.e...
Broad TRANSCRIPTION_COACTIVATOR_ACTIVITY	View Gene Set	2.076e-06	121	0.0001645	5	Genes annotated by the GO term GO:0003713. The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself.	www.broad.mit.e...
Broad HORMONE_RECEPTOR_BINDING	View Gene Set	2.336e-05	29	0.001542	6	Genes annotated by the GO term GO:0051427. Interacting selectively with a receptor for hormones.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING	View Gene Set	3.276e-05	300	0.001853	7	Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription.	www.broad.mit.e...
Broad NUCLEAR_HORMONE_RECEPTOR_BINDING	View Gene Set	5.16e-05	28	0.002554	8	Genes annotated by the GO term GO:0035257. Interacting selectively with a nuclear hormone receptor a ligand-dependent receptor found in the nucleus of the cell.	www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING	View Gene Set	9.794e-05	55	0.00431	9	Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding.	www.broad.mit.e...
Broad STEROID_HORMONE_RECEPTOR_BINDING	View Gene Set	0.0001322	10	0.005233	10	Genes annotated by the GO term GO:0035258. Interacting selectively with a steroid hormone receptor.	www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING	View Gene Set	0.0002351	34	0.008463	11	Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA.	www.broad.mit.e...
Broad SIGNAL_SEQUENCE_BINDING	View Gene Set	0.0002823	15	0.009316	12	Genes annotated by the GO term GO:0005048. Interacting selectively with a signal sequence a specific peptide sequence found on protein precursors or mature proteins that dictates where the mature protein is localized.	www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING	View Gene Set	0.0004357	32	0.01327	13	Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA.	www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING	View Gene Set	0.0006658	39	0.01883	14	Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome.	www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM	View Gene Set	0.001292	14	0.03411	15	Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced.	www.broad.mit.e...
Broad THYROID_HORMONE_RECEPTOR_BINDING	View Gene Set	0.001446	17	0.03578	16	Genes annotated by the GO term GO:0046966. Interacting selectively with a thyroid hormone receptor.	www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY	View Gene Set	0.001545	41	0.036	17	Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome.	www.broad.mit.e...
Broad CHROMATIN_BINDING	View Gene Set	0.002169	32	0.04771	18	Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
PMID 17643375	View Gene Set	3.806e-14	391	9.542e-11	1	Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.	www.ncbi.nlm.ni...
PMID 12226669	View Gene Set	3.334e-12	108	4.179e-09	2	Comprehensive proteomic analysis of the human spliceosome.	www.ncbi.nlm.ni...
PMID 14559993	View Gene Set	1.485e-09	51	7.448e-07	3	Regulation of alternative splicing by SRrp86 and its interacting proteins.	www.ncbi.nlm.ni...
PMID 15302935	View Gene Set	1.291e-09	773	7.448e-07	3	Large-scale characterization of HeLa cell nuclear phosphoproteins.	www.ncbi.nlm.ni...
PMID 15635413	View Gene Set	1.128e-09	421	7.448e-07	3	Nucleolar proteome dynamics.	www.ncbi.nlm.ni...
PMID 11042152	View Gene Set	1.166e-08	315	4.873e-06	6	Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells.	www.ncbi.nlm.ni...
PMID 11991638	View Gene Set	3.671e-08	74	1.315e-05	7	Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.	www.ncbi.nlm.ni...
PMID 12706105	View Gene Set	4.647e-08	182	1.456e-05	8	Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome.	www.ncbi.nlm.ni...
PMID 10810093	View Gene Set	7.546e-07	151	0.0002102	9	Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics.	www.ncbi.nlm.ni...
PMID 20516191	View Gene Set	1.862e-06	12	0.0004668	10	A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins).	www.ncbi.nlm.ni...
PMID 11078522	View Gene Set	2.246e-06	12	0.0005119	11	The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes.	www.ncbi.nlm.ni...
PMID 12837248	View Gene Set	2.498e-06	22	0.0005219	12	The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome.	www.ncbi.nlm.ni...
PMID 11279123	View Gene Set	5.697e-06	31	0.001032	13	The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present.	www.ncbi.nlm.ni...
PMID 11734557	View Gene Set	5.917e-06	12	0.001032	13	SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones.	www.ncbi.nlm.ni...
PMID 9731529	View Gene Set	6.174e-06	24	0.001032	13	Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.	www.ncbi.nlm.ni...
PMID 11790298	View Gene Set	7.545e-06	208	0.001154	16	Directed proteomic analysis of the human nucleolus.	www.ncbi.nlm.ni...
PMID 20508983	View Gene Set	7.828e-06	102	0.001154	16	Centrosome-related genes genetic variation and risk of breast cancer.	www.ncbi.nlm.ni...
PMID 11076961	View Gene Set	1.019e-05	14	0.001419	18	Characterization of vertebrate cohesin complexes and their regulation in prophase.	www.ncbi.nlm.ni...
PMID 16964243	View Gene Set	1.176e-05	504	0.001552	19	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	www.ncbi.nlm.ni...
PMID 11543634	View Gene Set	1.352e-05	58	0.001695	20	The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders.	www.ncbi.nlm.ni...
PMID 11285280	View Gene Set	2.731e-05	62	0.00326	21	Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint.	www.ncbi.nlm.ni...
PMID 17148452	View Gene Set	4.027e-05	87	0.004589	22	Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2.	www.ncbi.nlm.ni...
PMID 10078207	View Gene Set	4.294e-05	10	0.004681	23	Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits.	www.ncbi.nlm.ni...
PMID 12234937	View Gene Set	4.568e-05	34	0.004712	24	Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein.	www.ncbi.nlm.ni...
PMID 18997788	View Gene Set	4.699e-05	10	0.004712	24	The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction.	www.ncbi.nlm.ni...
PMID 15504738	View Gene Set	5.29e-05	19	0.005101	26	Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling.	www.ncbi.nlm.ni...
PMID 11535616	View Gene Set	9.981e-05	18	0.008885	27	Checkpoint inhibition of the APC/C in HeLa cells is mediated by a complex of BUBR1 BUB3 CDC20 and MAD2.	www.ncbi.nlm.ni...
PMID 14593737	View Gene Set	9.981e-05	18	0.008885	27	The mitotic checkpoint: a signaling pathway that allows a single unattached kinetochore to inhibit mitotic exit.	www.ncbi.nlm.ni...
PMID 16565220	View Gene Set	0.0001028	210	0.008885	27	Phosphoproteome analysis of the human mitotic spindle.	www.ncbi.nlm.ni...
PMID 16387653	View Gene Set	0.0001081	42	0.009035	30	ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.	www.ncbi.nlm.ni...
PMID 12429849	View Gene Set	0.0001151	106	0.009196	31	Functional proteomic analysis of human nucleolus.	www.ncbi.nlm.ni...
PMID 9891079	View Gene Set	0.0001174	15	0.009196	31	Cyclin E associates with BAF155 and BRG1 components of the mammalian SWI-SNF complex and alters the ability of BRG1 to induce growth arrest.	www.ncbi.nlm.ni...
PMID 14578343	View Gene Set	0.0001244	19	0.009453	33	Phosphopeptide binding specificities of BRCA1 COOH-terminal (BRCT) domains.	www.ncbi.nlm.ni...
PMID 10069390	View Gene Set	0.0001741	10	0.01283	34	Identification of caspases that cleave presenilin-1 and presenilin-2. Five presenilin-1 (PS1) mutations do not alter the sensitivity of PS1 to caspases.	www.ncbi.nlm.ni...
PMID 8895581	View Gene Set	0.000191	12	0.01368	35	Purification and biochemical heterogeneity of the mammalian SWI-SNF complex.	www.ncbi.nlm.ni...
PMID 20085707	View Gene Set	0.0001998	42	0.01391	36	Aire's partners in the molecular control of immunological tolerance.	www.ncbi.nlm.ni...
PMID 9710619	View Gene Set	0.000228	16	0.01545	37	A human RNA polymerase II complex containing factors that modify chromatin structure.	www.ncbi.nlm.ni...
PMID 10793135	View Gene Set	0.0002346	18	0.01548	38	Mitotic regulation of the APC activator proteins CDC20 and CDH1.	www.ncbi.nlm.ni...
PMID 18826954	View Gene Set	0.0002696	10	0.01733	39	SCCRO (DCUN1D1) is an essential component of the E3 complex for neddylation.	www.ncbi.nlm.ni...
PMID 11742988	View Gene Set	0.0002793	20	0.0175	40	APC/C-mediated destruction of the centrosomal kinase Nek2A occurs in early mitosis and depends upon a cyclin A-type D-box.	www.ncbi.nlm.ni...
PMID 12388589	View Gene Set	0.0003206	17	0.01914	41	A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons.	www.ncbi.nlm.ni...
PMID 18485873	View Gene Set	0.0003187	13	0.01914	41	Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.	www.ncbi.nlm.ni...
PMID 15009096	View Gene Set	0.0003582	39	0.02088	43	Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase.	www.ncbi.nlm.ni...
PMID 10983978	View Gene Set	0.0003805	10	0.02121	44	Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1.	www.ncbi.nlm.ni...
PMID 11500380	View Gene Set	0.0003872	10	0.02121	44	A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.	www.ncbi.nlm.ni...
PMID 18377426	View Gene Set	0.0003892	20	0.02121	44	Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex.	www.ncbi.nlm.ni...
PMID 18162579	View Gene Set	0.0005269	22	0.02811	47	Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1.	www.ncbi.nlm.ni...
PMID 11018012	View Gene Set	0.0005532	11	0.0283	48	Functional selectivity of recombinant mammalian SWI/SNF subunits.	www.ncbi.nlm.ni...
PMID 15502821	View Gene Set	0.0005431	12	0.0283	48	A conserved Mis12 centromere complex is linked to heterochromatic HP1 and outer kinetochore protein Zwint-1.	www.ncbi.nlm.ni...
PMID 15146077	View Gene Set	0.000642	32	0.03219	50	The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome.	www.ncbi.nlm.ni...
PMID 19596235	View Gene Set	0.0006781	85	0.03295	51	Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair.	www.ncbi.nlm.ni...
PMID 9472028	View Gene Set	0.0006834	12	0.03295	51	SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.	www.ncbi.nlm.ni...
PMID 15029244	View Gene Set	0.0007048	57	0.03334	53	Mammalian Cdh1/Fzr mediates its own degradation.	www.ncbi.nlm.ni...
PMID 11551941	View Gene Set	0.000735	26	0.03412	54	The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present.	www.ncbi.nlm.ni...
PMID 19584272	View Gene Set	0.0007743	11	0.03456	55	Modification of ovarian cancer risk by BRCA1/2-interacting genes in a multicenter cohort of BRCA1/2 mutation carriers.	www.ncbi.nlm.ni...
PMID 19690177	View Gene Set	0.0007621	31	0.03456	55	Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk.	www.ncbi.nlm.ni...
PMID 19710015	View Gene Set	0.0007858	48	0.03456	55	The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor.	www.ncbi.nlm.ni...
PMID 15142377	View Gene Set	0.0008869	19	0.03834	58	Partner molecules of accessory protein Vpr of the human immunodeficiency virus type 1.	www.ncbi.nlm.ni...
PMID 15931389	View Gene Set	0.0009963	12	0.04233	59	Microarray analysis identifies a death-from-cancer signature predicting therapy failure in patients with multiple types of cancer.	www.ncbi.nlm.ni...
PMID 16364912	View Gene Set	0.001046	12	0.0437	60	Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C.	www.ncbi.nlm.ni...
PMID 17363900	View Gene Set	0.001189	14	0.04885	61	The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions.	www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null PS50102	View Gene Set	8.895e-19	229	6.538e-16	1	RRM	expasy.org/pros...
Null PS50157	View Gene Set	3.278e-16	811	1.205e-13	2	ZINC_FINGER_C2H2_2	expasy.org/pros...
Null PS00028	View Gene Set	9.584e-16	830	2.348e-13	3	ZINC_FINGER_C2H2_1	expasy.org/pros...
Null PS50805	View Gene Set	4.59e-09	415	8.434e-07	4	KRAB	expasy.org/pros...
Null PS50014	View Gene Set	8.553e-07	41	0.0001257	5	BROMODOMAIN_2	expasy.org/pros...
Null PS00633	View Gene Set	6.843e-06	26	0.0008383	6	BROMODOMAIN_1	expasy.org/pros...
Null PS50280	View Gene Set	8.969e-05	47	0.009418	7	SET	expasy.org/pros...
Null PS50804	View Gene Set	0.0002928	63	0.0269	8	SCAN_BOX	expasy.org/pros...
Null PS50051	View Gene Set	0.0003545	8	0.02895	9	MCM_2	expasy.org/pros...
Null PS50868	View Gene Set	0.0003944	16	0.02899	10	POST_SET	expasy.org/pros...
Null PS50867	View Gene Set	0.0005301	7	0.03542	11	PRE_SET	expasy.org/pros...
Null PS50166	View Gene Set	0.0006268	13	0.03839	12	IMPORTIN_B_NT	expasy.org/pros...
Null PS51075	View Gene Set	0.0009153	8	0.04805	13	MH1	expasy.org/pros...
Null PS51076	View Gene Set	0.0009153	8	0.04805	13	MH2	expasy.org/pros...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null EC:2.1.1.43	View Gene Set	2.655e-06	19	0.0004195	1	Histone-lysine N-methyltransferase	expasy.org/enzy...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.1460853	View Gene Set	0.0002076	6	0.0139	1	Protein-protein-interaction for 1460853	www.ncbi.nlm.ni...
Null ppi.SMAD2	View Gene Set	0.0002206	6	0.0139	1	Protein-protein-interaction for SMAD2	www.ncbi.nlm.ni...
Null ppi.CFLAR	View Gene Set	0.000115	6	0.0139	1	Protein-protein-interaction for CFLAR	www.ncbi.nlm.ni...
Null ppi.SMAD3	View Gene Set	0.0009469	10	0.03792	4	Protein-protein-interaction for SMAD3	www.ncbi.nlm.ni...
Null ppi.RB1	View Gene Set	0.001003	44	0.03792	4	Protein-protein-interaction for RB1	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	5.239e-10	236	6.017e-07	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	3.432e-10	147	6.017e-07	1	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	1.928e-07	46	0.0001476	3	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	5.523e-07	64	0.0003171	4	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	1.883e-06	28	0.0008649	5	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	2.866e-06	101	0.001097	6	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.ING5	View Gene Set	5.333e-06	20	0.00175	7	Protein-protein-interaction for ING5	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	6.249e-06	53	0.001794	8	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.CASP8	View Gene Set	4.376e-05	17	0.01117	9	Protein-protein-interaction for CASP8	www.ncbi.nlm.ni...
Null ppi.CDC16	View Gene Set	5.801e-05	10	0.01226	10	Protein-protein-interaction for CDC16	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	5.872e-05	11	0.01226	10	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	7.533e-05	19	0.01442	12	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.ZEB1	View Gene Set	0.0001274	6	0.02251	13	Protein-protein-interaction for ZEB1	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	0.0001778	35	0.02405	14	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.HSPA8	View Gene Set	0.0001745	21	0.02405	14	Protein-protein-interaction for HSPA8	www.ncbi.nlm.ni...
Null ppi.KPNA2	View Gene Set	0.000178	14	0.02405	14	Protein-protein-interaction for KPNA2	www.ncbi.nlm.ni...
Null ppi.DCUN1D1	View Gene Set	0.0001692	8	0.02405	14	Protein-protein-interaction for DCUN1D1	www.ncbi.nlm.ni...
Null ppi.KLF1	View Gene Set	0.0002181	13	0.02783	18	Protein-protein-interaction for KLF1	www.ncbi.nlm.ni...
Null ppi.EIF3F	View Gene Set	0.0002372	22	0.02868	19	Protein-protein-interaction for EIF3F	www.ncbi.nlm.ni...
Null ppi.CTCF	View Gene Set	0.0002738	6	0.03107	20	Protein-protein-interaction for CTCF	www.ncbi.nlm.ni...
Null ppi.TAF6	View Gene Set	0.0002954	19	0.03107	20	Protein-protein-interaction for TAF6	www.ncbi.nlm.ni...
Null ppi.TAT	View Gene Set	0.0003076	11	0.03107	20	Protein-protein-interaction for TAT	www.ncbi.nlm.ni...
Null ppi.PAAF1	View Gene Set	0.0003111	20	0.03107	20	Protein-protein-interaction for PAAF1	www.ncbi.nlm.ni...
Null ppi.CARM1	View Gene Set	0.0003818	32	0.03269	24	Protein-protein-interaction for CARM1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.0003886	12	0.03269	24	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.MIS12	View Gene Set	0.0003683	9	0.03269	24	Protein-protein-interaction for MIS12	www.ncbi.nlm.ni...
Null ppi.CDC7	View Gene Set	0.0003928	7	0.03269	24	Protein-protein-interaction for CDC7	www.ncbi.nlm.ni...
Null ppi.NUP153	View Gene Set	0.0003984	11	0.03269	24	Protein-protein-interaction for NUP153	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0004174	17	0.03306	29	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.PRPF19	View Gene Set	0.0004669	9	0.03351	30	Protein-protein-interaction for PRPF19	www.ncbi.nlm.ni...
Null ppi.UCHL5	View Gene Set	0.0004664	33	0.03351	30	Protein-protein-interaction for UCHL5	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.0004413	13	0.03351	30	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.SMAD6	View Gene Set	0.0004852	6	0.03377	33	Protein-protein-interaction for SMAD6	www.ncbi.nlm.ni...
Null ppi.ATXN7	View Gene Set	0.0005025	10	0.03395	34	Protein-protein-interaction for ATXN7	www.ncbi.nlm.ni...
Null ppi.SF3B3	View Gene Set	0.0005868	16	0.03744	35	Protein-protein-interaction for SF3B3	www.ncbi.nlm.ni...
Null ppi.CASP10	View Gene Set	0.0005829	14	0.03744	35	Protein-protein-interaction for CASP10	www.ncbi.nlm.ni...
Null ppi.PPP4R2	View Gene Set	0.0007106	7	0.04396	37	Protein-protein-interaction for PPP4R2	www.ncbi.nlm.ni...
Null ppi.PIAS4	View Gene Set	0.0007272	22	0.04396	37	Protein-protein-interaction for PIAS4	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	0.000784	42	0.04618	39	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.SFRS12	View Gene Set	5.594e-09	49	1.328e-05	1	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.SF3B1	View Gene Set	1.952e-05	9	0.01777	2	Protein-protein-interaction for SF3B1	www.ncbi.nlm.ni...
Null ppi.TAF1	View Gene Set	3.743e-05	16	0.01777	2	Protein-protein-interaction for TAF1	www.ncbi.nlm.ni...
Null ppi.CDC16	View Gene Set	3.151e-05	10	0.01777	2	Protein-protein-interaction for CDC16	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	2.428e-05	11	0.01777	2	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.RAN	View Gene Set	6.624e-05	14	0.02247	6	Protein-protein-interaction for RAN	www.ncbi.nlm.ni...
Null ppi.NUP153	View Gene Set	6.381e-05	11	0.02247	6	Protein-protein-interaction for NUP153	www.ncbi.nlm.ni...
Null ppi.NUP50	View Gene Set	0.0001071	6	0.03179	8	Protein-protein-interaction for NUP50	www.ncbi.nlm.ni...
Null ppi.ZEB1	View Gene Set	0.000133	6	0.03508	9	Protein-protein-interaction for ZEB1	www.ncbi.nlm.ni...
Null ppi.TDG	View Gene Set	0.0002029	12	0.04816	10	Protein-protein-interaction for TDG	www.ncbi.nlm.ni...
Null ppi.ZNF8	View Gene Set	0.0002289	6	0.04941	11	Protein-protein-interaction for ZNF8	www.ncbi.nlm.ni...
Null ppi.NDC80	View Gene Set	0.0003136	10	0.04963	12	Protein-protein-interaction for NDC80	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	0.0002706	13	0.04963	12	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.RNF7	View Gene Set	0.0003083	7	0.04963	12	Protein-protein-interaction for RNF7	www.ncbi.nlm.ni...
Null ppi.ZEB2	View Gene Set	0.0002959	8	0.04963	12	Protein-protein-interaction for ZEB2	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.MEPCE	View Gene Set	3.432e-10	147	1.234e-06	1	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.155871	View Gene Set	9.459e-10	251	1.7e-06	2	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.SFRS12	View Gene Set	2.846e-09	50	3.41e-06	3	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	5.795e-07	66	0.0004659	4	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	6.482e-07	48	0.0004659	4	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	2.866e-06	101	0.001717	6	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	7.193e-06	31	0.003183	7	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.CDC16	View Gene Set	6.336e-06	14	0.003183	7	Protein-protein-interaction for CDC16	www.ncbi.nlm.ni...
Null ppi.NUP153	View Gene Set	7.972e-06	16	0.003183	7	Protein-protein-interaction for NUP153	www.ncbi.nlm.ni...
Null ppi.RAN	View Gene Set	2.751e-05	15	0.009082	10	Protein-protein-interaction for RAN	www.ncbi.nlm.ni...
Null ppi.TAF1	View Gene Set	2.78e-05	24	0.009082	10	Protein-protein-interaction for TAF1	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	4.007e-05	24	0.012	12	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.CTCF	View Gene Set	5.518e-05	11	0.01407	13	Protein-protein-interaction for CTCF	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	5.468e-05	96	0.01407	13	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	5.872e-05	11	0.01407	13	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.CASP8	View Gene Set	8.556e-05	19	0.01922	16	Protein-protein-interaction for CASP8	www.ncbi.nlm.ni...
Null ppi.TPX2	View Gene Set	0.0001177	5	0.02227	17	Protein-protein-interaction for TPX2	www.ncbi.nlm.ni...
Null ppi.PBRM1	View Gene Set	0.0001075	7	0.02227	17	Protein-protein-interaction for PBRM1	www.ncbi.nlm.ni...
Null ppi.PTMA	View Gene Set	0.0001174	21	0.02227	17	Protein-protein-interaction for PTMA	www.ncbi.nlm.ni...
Null ppi.ING5	View Gene Set	0.0001348	25	0.02422	20	Protein-protein-interaction for ING5	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	0.0001778	35	0.02943	21	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.0001802	14	0.02943	21	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.TAF11	View Gene Set	0.000193	19	0.03015	23	Protein-protein-interaction for TAF11	www.ncbi.nlm.ni...
Null ppi.1460853	View Gene Set	0.0002076	6	0.03072	24	Protein-protein-interaction for 1460853	www.ncbi.nlm.ni...
Null ppi.SF3B1	View Gene Set	0.0002308	31	0.03072	24	Protein-protein-interaction for SF3B1	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.0002209	11	0.03072	24	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.ZNF8	View Gene Set	0.0002289	6	0.03072	24	Protein-protein-interaction for ZNF8	www.ncbi.nlm.ni...
Null ppi.SMAD6	View Gene Set	0.0002673	8	0.03431	28	Protein-protein-interaction for SMAD6	www.ncbi.nlm.ni...
Null ppi.NDC80	View Gene Set	0.0003136	10	0.03522	29	Protein-protein-interaction for NDC80	www.ncbi.nlm.ni...
Null ppi.TAT	View Gene Set	0.0003076	11	0.03522	29	Protein-protein-interaction for TAT	www.ncbi.nlm.ni...
Null ppi.XPO1	View Gene Set	0.0003067	43	0.03522	29	Protein-protein-interaction for XPO1	www.ncbi.nlm.ni...
Null ppi.PAAF1	View Gene Set	0.0003111	20	0.03522	29	Protein-protein-interaction for PAAF1	www.ncbi.nlm.ni...
Null ppi.MIS12	View Gene Set	0.0003683	9	0.03831	33	Protein-protein-interaction for MIS12	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	0.0003583	42	0.03831	33	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.EIF3F	View Gene Set	0.0003731	25	0.03831	33	Protein-protein-interaction for EIF3F	www.ncbi.nlm.ni...
Null ppi.SF3B3	View Gene Set	0.000411	19	0.04054	36	Protein-protein-interaction for SF3B3	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0004174	17	0.04054	36	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.COMMD1	View Gene Set	0.00043	15	0.04066	38	Protein-protein-interaction for COMMD1	www.ncbi.nlm.ni...
Null ppi.ATXN7	View Gene Set	0.0004412	11	0.04066	38	Protein-protein-interaction for ATXN7	www.ncbi.nlm.ni...
Null ppi.PRPF19	View Gene Set	0.0004669	9	0.04195	40	Protein-protein-interaction for PRPF19	www.ncbi.nlm.ni...
Null ppi.RYBP	View Gene Set	0.0005039	15	0.0422	41	Protein-protein-interaction for RYBP	www.ncbi.nlm.ni...
Null ppi.XPO5	View Gene Set	0.0005049	14	0.0422	41	Protein-protein-interaction for XPO5	www.ncbi.nlm.ni...
Null ppi.ZEB1	View Gene Set	0.0004886	8	0.0422	41	Protein-protein-interaction for ZEB1	www.ncbi.nlm.ni...
Null ppi.SF3B2	View Gene Set	0.0005451	12	0.04416	44	Protein-protein-interaction for SF3B2	www.ncbi.nlm.ni...
Null ppi.MDM4	View Gene Set	0.000593	15	0.04416	44	Protein-protein-interaction for MDM4	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.0006266	15	0.04416	44	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.RNF138	View Gene Set	0.0006109	6	0.04416	44	Protein-protein-interaction for RNF138	www.ncbi.nlm.ni...
Null ppi.PLK1	View Gene Set	0.00061	22	0.04416	44	Protein-protein-interaction for PLK1	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	0.000582	21	0.04416	44	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.CASP10	View Gene Set	0.0005829	14	0.04416	44	Protein-protein-interaction for CASP10	www.ncbi.nlm.ni...
Null ppi.CFLAR	View Gene Set	0.0006144	26	0.04416	44	Protein-protein-interaction for CFLAR	www.ncbi.nlm.ni...
Null ppi.NUP50	View Gene Set	0.0006936	8	0.0456	52	Protein-protein-interaction for NUP50	www.ncbi.nlm.ni...
Null ppi.PPP4R2	View Gene Set	0.0007106	7	0.0456	52	Protein-protein-interaction for PPP4R2	www.ncbi.nlm.ni...
Null ppi.ATXN3	View Gene Set	0.0006866	7	0.0456	52	Protein-protein-interaction for ATXN3	www.ncbi.nlm.ni...
Null ppi.TAF6	View Gene Set	0.0007056	23	0.0456	52	Protein-protein-interaction for TAF6	www.ncbi.nlm.ni...
Null ppi.PHF17	View Gene Set	0.0006703	8	0.0456	52	Protein-protein-interaction for PHF17	www.ncbi.nlm.ni...
Null ppi.SNRPA	View Gene Set	0.0007238	6	0.04564	57	Protein-protein-interaction for SNRPA	www.ncbi.nlm.ni...
Null ppi.CARM1	View Gene Set	0.0007627	35	0.0469	58	Protein-protein-interaction for CARM1	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.0007715	33	0.0469	58	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.ZBTB2	View Gene Set	0.000796	6	0.0469	58	Protein-protein-interaction for ZBTB2	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	0.000784	42	0.0469	58	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.SCAND1	View Gene Set	0.0008134	9	0.04715	62	Protein-protein-interaction for SCAND1	www.ncbi.nlm.ni...
Null ppi.DCUN1D1	View Gene Set	0.0008385	11	0.04784	63	Protein-protein-interaction for DCUN1D1	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null AndrogenReceptor	View Gene Set	0.0001913	78	0.001913	1	CELL_MAP - AndrogenReceptor gene set	www.pathwaycomm...
Null TNF alpha/NF-kB	View Gene Set	0.005284	170	0.01813	2	CELL_MAP - TNF alpha/NF-kB gene set	www.pathwaycomm...
Null TGFBR	View Gene Set	0.005439	124	0.01813	2	CELL_MAP - TGFBR gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Aurora B signaling	View Gene Set	4.857e-05	41	0.009035	1	NCI_NATURE - Aurora B signaling gene set	www.pathwaycomm...
Null BARD1 signaling events	View Gene Set	0.0002521	29	0.01563	2	NCI_NATURE - BARD1 signaling events gene set	www.pathwaycomm...
Null Regulation of retinoblastoma protein	View Gene Set	0.0002238	66	0.01563	2	NCI_NATURE - Regulation of retinoblastoma protein gene set	www.pathwaycomm...
Null Validated targets of C-MYC transcriptional activation	View Gene Set	0.0004138	80	0.01924	4	NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set	www.pathwaycomm...
Null Regulation of Androgen receptor activity	View Gene Set	0.001551	108	0.04807	5	NCI_NATURE - Regulation of Androgen receptor activity gene set	www.pathwaycomm...
Null FOXM1 transcription factor network	View Gene Set	0.001353	42	0.04807	5	NCI_NATURE - FOXM1 transcription factor network gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null DNA Replication	View Gene Set	6.363e-14	200	5.56e-11	1	REACTOME - DNA Replication gene set	www.pathwaycomm...
Null Mitotic M-M/G1 phases	View Gene Set	9.955e-14	180	5.56e-11	1	REACTOME - Mitotic M-M/G1 phases gene set	www.pathwaycomm...
Null M Phase	View Gene Set	4.18e-13	90	1.556e-10	3	REACTOME - M Phase gene set	www.pathwaycomm...
Null Mitotic Prometaphase	View Gene Set	2.828e-12	86	7.896e-10	4	REACTOME - Mitotic Prometaphase gene set	www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA	View Gene Set	4.112e-12	138	9.186e-10	5	REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set	www.pathwaycomm...
Null mRNA Splicing - Major Pathway	View Gene Set	8.486e-12	107	1.354e-09	6	REACTOME - mRNA Splicing - Major Pathway gene set	www.pathwaycomm...
Null mRNA Splicing	View Gene Set	8.486e-12	107	1.354e-09	6	REACTOME - mRNA Splicing gene set	www.pathwaycomm...
Null Cell Cycle Mitotic	View Gene Set	1.741e-11	312	2.431e-09	8	REACTOME - Cell Cycle Mitotic gene set	www.pathwaycomm... Mitotic&format=...
Null mRNA Processing	View Gene Set	8.869e-10	158	1.101e-07	9	REACTOME - mRNA Processing gene set	www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript	View Gene Set	1.313e-09	185	1.466e-07	10	REACTOME - Formation and Maturation of mRNA Transcript gene set	www.pathwaycomm...
Null Gene Expression	View Gene Set	8.717e-09	381	8.852e-07	11	REACTOME - Gene Expression gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA	View Gene Set	5.584e-08	34	4.798e-06	12	REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set	www.pathwaycomm...
Null mRNA 3'-end processing	View Gene Set	5.584e-08	34	4.798e-06	12	REACTOME - mRNA 3'-end processing gene set	www.pathwaycomm...
Null Post-Elongation Processing of the Transcript	View Gene Set	1.546e-07	43	1.079e-05	14	REACTOME - Post-Elongation Processing of the Transcript gene set	www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region	View Gene Set	1.546e-07	43	1.079e-05	14	REACTOME - Cleavage of Growing Transcript in the Termination Region gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription Termination	View Gene Set	1.546e-07	43	1.079e-05	14	REACTOME - RNA Polymerase II Transcription Termination gene set	www.pathwaycomm...
Null Cell Cycle Checkpoints	View Gene Set	6.985e-07	124	4.589e-05	17	REACTOME - Cell Cycle Checkpoints gene set	www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript	View Gene Set	9.069e-07	51	5.628e-05	18	REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set	www.pathwaycomm...
Null Phosphorylation of the APC/C	View Gene Set	1.99e-06	26	0.000117	19	REACTOME - Phosphorylation of the APC/C gene set	www.pathwaycomm...
Null Metabolism of RNA	View Gene Set	2.252e-06	174	0.0001258	20	REACTOME - Metabolism of RNA gene set	www.pathwaycomm...
Null Regulation of mitotic cell cycle	View Gene Set	2.524e-06	95	0.0001282	21	REACTOME - Regulation of mitotic cell cycle gene set	www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins	View Gene Set	2.524e-06	95	0.0001282	21	REACTOME - APC/C-mediated degradation of cell cycle proteins gene set	www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase	View Gene Set	6.842e-06	88	0.0003323	23	REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set	www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm	View Gene Set	8.046e-06	55	0.0003745	24	REACTOME - Transport of Mature Transcript to Cytoplasm gene set	www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins	View Gene Set	1.449e-05	86	0.0006473	25	REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set	www.pathwaycomm...
Null Deadenylation-dependent mRNA decay	View Gene Set	2.166e-05	46	0.0009306	26	REACTOME - Deadenylation-dependent mRNA decay gene set	www.pathwaycomm...
Null Deadenylation of mRNA	View Gene Set	3.902e-05	22	0.001614	27	REACTOME - Deadenylation of mRNA gene set	www.pathwaycomm...
Null Phosphorylation of Emi1	View Gene Set	7.85e-05	12	0.003132	28	REACTOME - Phosphorylation of Emi1 gene set	www.pathwaycomm...
Null Mitotic G1-G1/S phases	View Gene Set	8.325e-05	113	0.003207	29	REACTOME - Mitotic G1-G1/S phases gene set	www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components	View Gene Set	9.981e-05	18	0.003596	30	REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set	www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex	View Gene Set	9.981e-05	18	0.003596	30	REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set	www.pathwaycomm...
Null G1/S Transition	View Gene Set	0.0001077	104	0.00376	32	REACTOME - G1/S Transition gene set	www.pathwaycomm...
Null G2/M Checkpoints	View Gene Set	0.0001225	43	0.004146	33	REACTOME - G2/M Checkpoints gene set	www.pathwaycomm...
Null Polo-like kinase mediated events	View Gene Set	0.0002018	10	0.006629	34	REACTOME - Polo-like kinase mediated events gene set	www.pathwaycomm...
Null Pyrimidine biosynthesis	View Gene Set	0.0002695	6	0.008599	35	REACTOME - Pyrimidine biosynthesis gene set	www.pathwaycomm...
Null Metabolism of mRNA	View Gene Set	0.0002906	125	0.009017	36	REACTOME - Metabolism of mRNA gene set	www.pathwaycomm...
Null Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex	View Gene Set	0.0003268	6	0.009867	37	REACTOME - Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex gene set	www.pathwaycomm...
Null DNA Replication Pre-Initiation	View Gene Set	0.0004205	90	0.01146	38	REACTOME - DNA Replication Pre-Initiation gene set	www.pathwaycomm...
Null Mitotic Telophase /Cytokinesis	View Gene Set	0.0003987	10	0.01146	38	REACTOME - Mitotic Telophase /Cytokinesis gene set	www.pathwaycomm...
Null M/G1 Transition	View Gene Set	0.0004205	90	0.01146	38	REACTOME - M/G1 Transition gene set	www.pathwaycomm...
Null Mitotic Metaphase/Anaphase Transition	View Gene Set	0.0004089	8	0.01146	38	REACTOME - Mitotic Metaphase/Anaphase Transition gene set	www.pathwaycomm...
Null Transcription	View Gene Set	0.0004638	178	0.01233	42	REACTOME - Transcription gene set	www.pathwaycomm...
Null S Phase	View Gene Set	0.0004821	113	0.01252	43	REACTOME - S Phase gene set	www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A	View Gene Set	0.0005421	75	0.01357	44	REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set	www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins	View Gene Set	0.0005468	77	0.01357	44	REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set	www.pathwaycomm...
Null Mitotic Spindle Checkpoint	View Gene Set	0.0005623	19	0.01366	46	REACTOME - Mitotic Spindle Checkpoint gene set	www.pathwaycomm...
Null G2/M DNA damage checkpoint	View Gene Set	0.0006239	29	0.01483	47	REACTOME - G2/M DNA damage checkpoint gene set	www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1	View Gene Set	0.0006901	77	0.01606	48	REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set	www.pathwaycomm...
Null snRNP Assembly	View Gene Set	0.0007228	50	0.01615	49	REACTOME - snRNP Assembly gene set	www.pathwaycomm...
Null Metabolism of non-coding RNA	View Gene Set	0.0007228	50	0.01615	49	REACTOME - Metabolism of non-coding RNA gene set	www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C	View Gene Set	0.0009146	67	0.02003	51	REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set	www.pathwaycomm...
Null G2/M DNA replication checkpoint	View Gene Set	0.0009731	5	0.0209	52	REACTOME - G2/M DNA replication checkpoint gene set	www.pathwaycomm...
Null Synthesis of DNA	View Gene Set	0.001003	102	0.02114	53	REACTOME - Synthesis of DNA gene set	www.pathwaycomm...
Null Activation of the pre-replicative complex	View Gene Set	0.001155	30	0.0239	54	REACTOME - Activation of the pre-replicative complex gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription	View Gene Set	0.001195	101	0.02427	55	REACTOME - RNA Polymerase II Transcription gene set	www.pathwaycomm...
Null Activation of ATR in response to replication stress	View Gene Set	0.001363	37	0.02719	56	REACTOME - Activation of ATR in response to replication stress gene set	www.pathwaycomm...
Null Interactions of Rev with host cellular proteins	View Gene Set	0.001868	33	0.03661	57	REACTOME - Interactions of Rev with host cellular proteins gene set	www.pathwaycomm...
Null DNA strand elongation	View Gene Set	0.001953	31	0.0376	58	REACTOME - DNA strand elongation gene set	www.pathwaycomm...
Null APC-Cdc20 mediated degradation of Nek2A	View Gene Set	0.002513	23	0.04758	59	REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set	www.pathwaycomm...
Null Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase	View Gene Set	0.002571	16	0.04787	60	REACTOME - Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase gene set	www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-590-3p	View Gene Set	5.956e-11	3575	4.032e-08	1	microRNA targets for hsa-miR-590-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-144	View Gene Set	4.338e-06	1767	0.001468	2	microRNA targets for hsa-miR-144 from miranda.targets	www.mirbase.org...
Null hsa-miR-548c-3p	View Gene Set	3.54e-05	3130	0.006117	3	microRNA targets for hsa-miR-548c-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-548l	View Gene Set	4.518e-05	2599	0.006117	3	microRNA targets for hsa-miR-548l from miranda.targets	www.mirbase.org...
Null hsa-miR-607	View Gene Set	3.788e-05	2322	0.006117	3	microRNA targets for hsa-miR-607 from miranda.targets	www.mirbase.org...
Null hsa-miR-548b-5p	View Gene Set	9.31e-05	3175	0.01051	6	microRNA targets for hsa-miR-548b-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-200a	View Gene Set	0.000109	1619	0.01054	7	microRNA targets for hsa-miR-200a from miranda.targets	www.mirbase.org...
Null hsa-miR-1323	View Gene Set	0.000233	2071	0.01213	8	microRNA targets for hsa-miR-1323 from miranda.targets	www.mirbase.org...
Null hsa-miR-141	View Gene Set	0.0001703	1773	0.01213	8	microRNA targets for hsa-miR-141 from miranda.targets	www.mirbase.org...
Null hsa-miR-500	View Gene Set	0.0001984	1378	0.01213	8	microRNA targets for hsa-miR-500 from miranda.targets	www.mirbase.org...
Null hsa-miR-548e	View Gene Set	0.000211	2325	0.01213	8	microRNA targets for hsa-miR-548e from miranda.targets	www.mirbase.org...
Null hsa-miR-548f	View Gene Set	0.0001632	2082	0.01213	8	microRNA targets for hsa-miR-548f from miranda.targets	www.mirbase.org...
Null hsa-miR-944	View Gene Set	0.0002183	2438	0.01213	8	microRNA targets for hsa-miR-944 from miranda.targets	www.mirbase.org...
Null hsa-miR-548o	View Gene Set	0.0002937	2216	0.01328	14	microRNA targets for hsa-miR-548o from miranda.targets	www.mirbase.org...
Null hsa-miR-561	View Gene Set	0.0002942	2925	0.01328	14	microRNA targets for hsa-miR-561 from miranda.targets	www.mirbase.org...
Null hsa-miR-548d-5p	View Gene Set	0.000336	3270	0.01422	16	microRNA targets for hsa-miR-548d-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-380	View Gene Set	0.0003926	1449	0.01563	17	microRNA targets for hsa-miR-380 from miranda.targets	www.mirbase.org...
Null hsa-miR-1252	View Gene Set	0.00053	3125	0.01993	18	microRNA targets for hsa-miR-1252 from miranda.targets	www.mirbase.org...
Null hsa-miR-302f	View Gene Set	0.0006355	895	0.02264	19	microRNA targets for hsa-miR-302f from miranda.targets	www.mirbase.org...
Null hsa-miR-653	View Gene Set	0.0006858	1411	0.02321	20	microRNA targets for hsa-miR-653 from miranda.targets	www.mirbase.org...
Null hsa-miR-573	View Gene Set	0.0008738	2023	0.02817	21	microRNA targets for hsa-miR-573 from miranda.targets	www.mirbase.org...
Null hsa-miR-548n	View Gene Set	0.0009893	3830	0.03044	22	microRNA targets for hsa-miR-548n from miranda.targets	www.mirbase.org...
Null hsa-miR-548j	View Gene Set	0.00129	2652	0.03797	23	microRNA targets for hsa-miR-548j from miranda.targets	www.mirbase.org...
Null hsa-miR-548h	View Gene Set	0.001569	2539	0.04084	24	microRNA targets for hsa-miR-548h from miranda.targets	www.mirbase.org...
Null hsa-miR-606	View Gene Set	0.001515	1040	0.04084	24	microRNA targets for hsa-miR-606 from miranda.targets	www.mirbase.org...
Null hsa-miR-655	View Gene Set	0.001471	1858	0.04084	24	microRNA targets for hsa-miR-655 from miranda.targets	www.mirbase.org...
Null hsa-miR-548m	View Gene Set	0.001676	2295	0.04202	27	microRNA targets for hsa-miR-548m from miranda.targets	www.mirbase.org...
Null hsa-miR-515-5p	View Gene Set	0.001755	1821	0.04244	28	microRNA targets for hsa-miR-515-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-548c-5p	View Gene Set	0.001973	2909	0.04605	29	microRNA targets for hsa-miR-548c-5p from miranda.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-495	View Gene Set	2.123e-08	796	1.51e-05	1	microRNA targets for hsa-miR-495 from mirbase.targets	www.mirbase.org...
Null hsa-miR-190	View Gene Set	2.158e-07	668	7.67e-05	2	microRNA targets for hsa-miR-190 from mirbase.targets	www.mirbase.org...
Null hsa-miR-190b	View Gene Set	3.388e-07	666	8.03e-05	3	microRNA targets for hsa-miR-190b from mirbase.targets	www.mirbase.org...
Null hsa-miR-144	View Gene Set	6.201e-07	796	0.0001102	4	microRNA targets for hsa-miR-144 from mirbase.targets	www.mirbase.org...
Null hsa-miR-590-3p	View Gene Set	1.7e-06	742	0.0002417	5	microRNA targets for hsa-miR-590-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-302c*	View Gene Set	4.142e-06	615	0.0004288	6	microRNA targets for hsa-miR-302c* from mirbase.targets	www.mirbase.org...
Null hsa-miR-548b-5p	View Gene Set	4.222e-06	818	0.0004288	6	microRNA targets for hsa-miR-548b-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-380	View Gene Set	5.995e-06	581	0.0005328	8	microRNA targets for hsa-miR-380 from mirbase.targets	www.mirbase.org...
Null hsa-miR-494	View Gene Set	1e-05	637	0.0007902	9	microRNA targets for hsa-miR-494 from mirbase.targets	www.mirbase.org...
Null hsa-miR-548d-5p	View Gene Set	1.405e-05	795	0.000999	10	microRNA targets for hsa-miR-548d-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-374b	View Gene Set	3.146e-05	574	0.002033	11	microRNA targets for hsa-miR-374b from mirbase.targets	www.mirbase.org...
Null hsa-miR-23a	View Gene Set	5.545e-05	807	0.003286	12	microRNA targets for hsa-miR-23a from mirbase.targets	www.mirbase.org...
Null hsa-miR-802	View Gene Set	0.0001079	683	0.005902	13	microRNA targets for hsa-miR-802 from mirbase.targets	www.mirbase.org...
Null hsa-miR-28-3p	View Gene Set	0.0001355	712	0.00688	14	microRNA targets for hsa-miR-28-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-606	View Gene Set	0.0001713	596	0.008119	15	microRNA targets for hsa-miR-606 from mirbase.targets	www.mirbase.org...
Null hsa-miR-196a*	View Gene Set	0.0002161	526	0.009038	16	microRNA targets for hsa-miR-196a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-548c-5p	View Gene Set	0.0002134	801	0.009038	16	microRNA targets for hsa-miR-548c-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-376b	View Gene Set	0.0002486	779	0.009819	18	microRNA targets for hsa-miR-376b from mirbase.targets	www.mirbase.org...
Null hsa-miR-338-5p	View Gene Set	0.0002854	814	0.01068	19	microRNA targets for hsa-miR-338-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-655	View Gene Set	0.0003365	654	0.01196	20	microRNA targets for hsa-miR-655 from mirbase.targets	www.mirbase.org...
Null hsa-let-7f-1*	View Gene Set	0.0003568	751	0.01208	21	microRNA targets for hsa-let-7f-1* from mirbase.targets	www.mirbase.org...
Null hsa-miR-452*	View Gene Set	0.0003859	532	0.01247	22	microRNA targets for hsa-miR-452* from mirbase.targets	www.mirbase.org...
Null hsa-miR-768-3p	View Gene Set	0.0004066	770	0.01257	23	microRNA targets for hsa-miR-768-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-7-2*	View Gene Set	0.0004347	531	0.01288	24	microRNA targets for hsa-miR-7-2* from mirbase.targets	www.mirbase.org...
Null hsa-miR-573	View Gene Set	0.0004912	696	0.01397	25	microRNA targets for hsa-miR-573 from mirbase.targets	www.mirbase.org...
Null hsa-miR-148a*	View Gene Set	0.0009194	583	0.02514	26	microRNA targets for hsa-miR-148a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-34b	View Gene Set	0.0009657	776	0.02543	27	microRNA targets for hsa-miR-34b from mirbase.targets	www.mirbase.org...
Null hsa-miR-101*	View Gene Set	0.001154	605	0.02735	28	microRNA targets for hsa-miR-101* from mirbase.targets	www.mirbase.org...
Null hsa-miR-499-5p	View Gene Set	0.001093	761	0.02735	28	microRNA targets for hsa-miR-499-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-548c-3p	View Gene Set	0.001131	863	0.02735	28	microRNA targets for hsa-miR-548c-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-23b	View Gene Set	0.001313	772	0.02745	31	microRNA targets for hsa-miR-23b from mirbase.targets	www.mirbase.org...
Null hsa-miR-452	View Gene Set	0.001263	729	0.02745	31	microRNA targets for hsa-miR-452 from mirbase.targets	www.mirbase.org...
Null hsa-miR-500	View Gene Set	0.0013	620	0.02745	31	microRNA targets for hsa-miR-500 from mirbase.targets	www.mirbase.org...
Null hsa-miR-553	View Gene Set	0.001206	672	0.02745	31	microRNA targets for hsa-miR-553 from mirbase.targets	www.mirbase.org...
Null hsa-miR-376a	View Gene Set	0.001496	746	0.03039	35	microRNA targets for hsa-miR-376a from mirbase.targets	www.mirbase.org...
Null hsa-miR-323-3p	View Gene Set	0.001669	756	0.03122	36	microRNA targets for hsa-miR-323-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-548a-3p	View Gene Set	0.001669	899	0.03122	36	microRNA targets for hsa-miR-548a-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-95	View Gene Set	0.001587	787	0.03122	36	microRNA targets for hsa-miR-95 from mirbase.targets	www.mirbase.org...
Null hsa-let-7d*	View Gene Set	0.001716	781	0.03128	39	microRNA targets for hsa-let-7d* from mirbase.targets	www.mirbase.org...
Null hsa-miR-576-3p	View Gene Set	0.002113	714	0.03755	40	microRNA targets for hsa-miR-576-3p from mirbase.targets	www.mirbase.org...
Null hsa-let-7a*	View Gene Set	0.002248	772	0.03855	41	microRNA targets for hsa-let-7a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-451	View Gene Set	0.002277	766	0.03855	41	microRNA targets for hsa-miR-451 from mirbase.targets	www.mirbase.org...
Null hsa-miR-141	View Gene Set	0.002553	812	0.03963	43	microRNA targets for hsa-miR-141 from mirbase.targets	www.mirbase.org...
Null hsa-miR-548a-5p	View Gene Set	0.002491	763	0.03963	43	microRNA targets for hsa-miR-548a-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-607	View Gene Set	0.002564	620	0.03963	43	microRNA targets for hsa-miR-607 from mirbase.targets	www.mirbase.org...
Null hsa-miR-891b	View Gene Set	0.00253	755	0.03963	43	microRNA targets for hsa-miR-891b from mirbase.targets	www.mirbase.org...
Null hsa-let-7f-2*	View Gene Set	0.002705	820	0.04006	47	microRNA targets for hsa-let-7f-2* from mirbase.targets	www.mirbase.org...
Null hsa-miR-651	View Gene Set	0.002687	676	0.04006	47	microRNA targets for hsa-miR-651 from mirbase.targets	www.mirbase.org...
Null hsa-miR-548d-3p	View Gene Set	0.002982	978	0.04241	49	microRNA targets for hsa-miR-548d-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-549	View Gene Set	0.00296	718	0.04241	49	microRNA targets for hsa-miR-549 from mirbase.targets	www.mirbase.org...
Null hsa-miR-146b-5p	View Gene Set	0.003271	690	0.04389	51	microRNA targets for hsa-miR-146b-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-381	View Gene Set	0.003224	643	0.04389	51	microRNA targets for hsa-miR-381 from mirbase.targets	www.mirbase.org...
Null hsa-miR-421	View Gene Set	0.003252	765	0.04389	51	microRNA targets for hsa-miR-421 from mirbase.targets	www.mirbase.org...
Null hsa-miR-568	View Gene Set	0.003499	649	0.04607	54	microRNA targets for hsa-miR-568 from mirbase.targets	www.mirbase.org...
Null hsa-miR-586	View Gene Set	0.003576	721	0.04623	55	microRNA targets for hsa-miR-586 from mirbase.targets	www.mirbase.org...
Null hsa-miR-7-1*	View Gene Set	0.003689	524	0.04683	56	microRNA targets for hsa-miR-7-1* from mirbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-590-3p	View Gene Set	1.386e-10	2046	7.666e-08	1	microRNA targets for hsa-miR-590-3p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-522	View Gene Set	6.711e-07	618	0.0001856	2	microRNA targets for hsa-miR-522 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-582-5p	View Gene Set	6.586e-06	526	0.001214	3	microRNA targets for hsa-miR-582-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-380	View Gene Set	1.046e-05	496	0.001255	4	microRNA targets for hsa-miR-380 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-548a-3p	View Gene Set	1.135e-05	900	0.001255	4	microRNA targets for hsa-miR-548a-3p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-500	View Gene Set	5.346e-05	378	0.00448	6	microRNA targets for hsa-miR-500 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-513-3p	View Gene Set	5.671e-05	1119	0.00448	6	microRNA targets for hsa-miR-513-3p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-144	View Gene Set	6.634e-05	649	0.004586	8	microRNA targets for hsa-miR-144 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-573	View Gene Set	8.662e-05	284	0.005322	9	microRNA targets for hsa-miR-573 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-196b	View Gene Set	0.0001439	157	0.007434	10	microRNA targets for hsa-miR-196b from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-802	View Gene Set	0.0001479	428	0.007434	10	microRNA targets for hsa-miR-802 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-34b	View Gene Set	0.000176	350	0.008111	12	microRNA targets for hsa-miR-34b from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-569	View Gene Set	0.0002081	276	0.008221	13	microRNA targets for hsa-miR-569 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-606	View Gene Set	0.0002079	282	0.008221	13	microRNA targets for hsa-miR-606 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-586	View Gene Set	0.0002423	587	0.008934	15	microRNA targets for hsa-miR-586 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-561	View Gene Set	0.0002585	1193	0.008936	16	microRNA targets for hsa-miR-561 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-186	View Gene Set	0.0003527	1020	0.01095	17	microRNA targets for hsa-miR-186 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-630	View Gene Set	0.0003563	248	0.01095	17	microRNA targets for hsa-miR-630 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-509-3p	View Gene Set	0.0003873	126	0.01127	19	microRNA targets for hsa-miR-509-3p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-494	View Gene Set	0.0004845	696	0.01316	20	microRNA targets for hsa-miR-494 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-548c-3p	View Gene Set	0.0004996	1804	0.01316	20	microRNA targets for hsa-miR-548c-3p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-194	View Gene Set	0.0006544	291	0.01448	22	microRNA targets for hsa-miR-194 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-320	View Gene Set	0.0006251	550	0.01448	22	microRNA targets for hsa-miR-320 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-584	View Gene Set	0.0006156	278	0.01448	22	microRNA targets for hsa-miR-584 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-641	View Gene Set	0.0006342	659	0.01448	22	microRNA targets for hsa-miR-641 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-196a	View Gene Set	0.0007719	156	0.01581	26	microRNA targets for hsa-miR-196a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-511	View Gene Set	0.0007504	733	0.01581	26	microRNA targets for hsa-miR-511 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-27a	View Gene Set	0.0009988	518	0.01839	28	microRNA targets for hsa-miR-27a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-577	View Gene Set	0.001002	731	0.01839	28	microRNA targets for hsa-miR-577 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-643	View Gene Set	0.001031	292	0.01839	28	microRNA targets for hsa-miR-643 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-944	View Gene Set	0.0009979	1362	0.01839	28	microRNA targets for hsa-miR-944 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-200a	View Gene Set	0.001144	589	0.01976	32	microRNA targets for hsa-miR-200a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-203	View Gene Set	0.00127	754	0.02129	33	microRNA targets for hsa-miR-203 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-134	View Gene Set	0.001309	165	0.02129	34	microRNA targets for hsa-miR-134 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-155	View Gene Set	0.001518	427	0.02242	35	microRNA targets for hsa-miR-155 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-27b	View Gene Set	0.001464	528	0.02242	35	microRNA targets for hsa-miR-27b from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-331-5p	View Gene Set	0.001476	219	0.02242	35	microRNA targets for hsa-miR-331-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-518d-5p	View Gene Set	0.001662	166	0.02242	35	microRNA targets for hsa-miR-518d-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-520c-5p	View Gene Set	0.001662	166	0.02242	35	microRNA targets for hsa-miR-520c-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-526a	View Gene Set	0.001662	166	0.02242	35	microRNA targets for hsa-miR-526a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-548b-5p	View Gene Set	0.00155	1157	0.02242	35	microRNA targets for hsa-miR-548b-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-142-5p	View Gene Set	0.002017	727	0.02656	42	microRNA targets for hsa-miR-142-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-23a	View Gene Set	0.00226	858	0.02809	43	microRNA targets for hsa-miR-23a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-23b	View Gene Set	0.002285	875	0.02809	43	microRNA targets for hsa-miR-23b from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-485-3p	View Gene Set	0.002277	370	0.02809	43	microRNA targets for hsa-miR-485-3p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-657	View Gene Set	0.002547	168	0.03062	46	microRNA targets for hsa-miR-657 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-141	View Gene Set	0.002655	574	0.03123	47	microRNA targets for hsa-miR-141 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-559	View Gene Set	0.002866	977	0.03302	48	microRNA targets for hsa-miR-559 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-613	View Gene Set	0.002956	322	0.03336	49	microRNA targets for hsa-miR-613 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-450b-5p	View Gene Set	0.003041	691	0.03363	50	microRNA targets for hsa-miR-450b-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-640	View Gene Set	0.003163	166	0.0343	51	microRNA targets for hsa-miR-640 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-376c	View Gene Set	0.003381	327	0.03596	52	microRNA targets for hsa-miR-376c from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-548c-5p	View Gene Set	0.003596	1151	0.03683	53	microRNA targets for hsa-miR-548c-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-616	View Gene Set	0.003573	188	0.03683	53	microRNA targets for hsa-miR-616 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-548a-5p	View Gene Set	0.004016	1120	0.04038	55	microRNA targets for hsa-miR-548a-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-548d-5p	View Gene Set	0.004148	1147	0.04096	56	microRNA targets for hsa-miR-548d-5p from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-135a	View Gene Set	0.004745	301	0.04604	57	microRNA targets for hsa-miR-135a from mirtarget2.targets	www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-144	View Gene Set	4.139e-05	431	0.007368	1	microRNA targets for hsa-miR-144 from pictar.targets	www.mirbase.org...
Null hsa-miR-134	View Gene Set	0.0001101	86	0.009803	2	microRNA targets for hsa-miR-134 from pictar.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-590-3p	View Gene Set	2.694e-05	796	0.006572	1	microRNA targets for hsa-miR-590-3p from targetscan.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-144	View Gene Set	6.932e-05	57	0.04244	1	microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-144 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-494	View Gene Set	8.266e-05	36	0.04244	1	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-494 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-144	View Gene Set	5.373e-05	141	0.04244	1	microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-144 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-27a	View Gene Set	2.438e-05	157	0.04244	1	microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-590-3p	View Gene Set	2.621e-16	4554	6.066e-13	1	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p	View Gene Set	2.419e-15	4420	2.799e-12	2	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-590-3p	View Gene Set	7.118e-15	4159	5.49e-12	3	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p	View Gene Set	1.413e-13	2774	8.174e-11	4	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-144	View Gene Set	2.32e-09	2426	1.074e-06	5	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-3p	View Gene Set	1.041e-08	4092	4.016e-06	6	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-144	View Gene Set	1.36e-08	2413	4.066e-06	7	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-144	View Gene Set	1.406e-08	1553	4.066e-06	7	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-380	View Gene Set	3.413e-08	2022	8.776e-06	9	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-380 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548b-5p	View Gene Set	8.267e-08	3963	1.913e-05	10	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548b-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-190	View Gene Set	2.25e-07	800	4.734e-05	11	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-190 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-561	View Gene Set	2.458e-07	3650	4.74e-05	12	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-561 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-190	View Gene Set	3.363e-07	845	4.863e-05	13	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-190 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-190	View Gene Set	3.349e-07	870	4.863e-05	13	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-190 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-494	View Gene Set	2.97e-07	1406	4.863e-05	13	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-494 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-144	View Gene Set	3.109e-07	1507	4.863e-05	13	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-190b	View Gene Set	4.061e-07	881	5.527e-05	17	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-190b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-495	View Gene Set	6.857e-07	2495	8.816e-05	18	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-495 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-144	View Gene Set	7.726e-07	2124	9.41e-05	19	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-144	View Gene Set	8.973e-07	2497	0.0001038	20	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-5p	View Gene Set	1.52e-06	4039	0.0001599	21	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-495	View Gene Set	1.457e-06	2114	0.0001599	21	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-495 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-500	View Gene Set	1.812e-06	1945	0.0001823	23	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-500 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-607	View Gene Set	2.439e-06	3059	0.0002351	24	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-607 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-606	View Gene Set	3.294e-06	1506	0.0003049	25	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-606 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-573	View Gene Set	5.656e-06	2606	0.0005033	26	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-573 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-495	View Gene Set	6.03e-06	2691	0.0005168	27	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-495 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-190	View Gene Set	7.19e-06	2237	0.0005942	28	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-190 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-190	View Gene Set	8.191e-06	2274	0.0006536	29	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-190 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-190	View Gene Set	8.781e-06	2251	0.0006773	30	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-190 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-5p	View Gene Set	9.289e-06	3706	0.0006934	31	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-144	View Gene Set	1.295e-05	1652	0.0009366	32	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-944	View Gene Set	2.223e-05	3201	0.001559	33	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-944 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-144	View Gene Set	2.529e-05	2087	0.001702	34	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-23a	View Gene Set	2.574e-05	1484	0.001702	34	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-586	View Gene Set	3.508e-05	2979	0.002194	36	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-586 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-200a	View Gene Set	3.476e-05	1858	0.002194	36	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-495	View Gene Set	4.189e-05	2518	0.002551	38	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-495 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-190b	View Gene Set	5.882e-05	1841	0.003403	39	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-190b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-23a	View Gene Set	5.808e-05	1649	0.003403	39	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-655	View Gene Set	6.089e-05	2490	0.003436	41	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-655 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-450b-5p	View Gene Set	6.489e-05	2880	0.003492	42	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-450b-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-559	View Gene Set	6.457e-05	3456	0.003492	42	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-559 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-5p	View Gene Set	7.182e-05	3746	0.003777	44	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-200a	View Gene Set	7.436e-05	1931	0.003824	45	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-452	View Gene Set	7.799e-05	2595	0.003923	46	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-452 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-429	View Gene Set	8.289e-05	2506	0.004081	47	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-429 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-3p	View Gene Set	8.511e-05	3211	0.004094	48	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-144	View Gene Set	8.67e-05	2184	0.004094	48	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-186	View Gene Set	9.034e-05	1788	0.004181	50	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-186 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-141	View Gene Set	9.965e-05	2432	0.004521	51	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-141 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-190b	View Gene Set	0.0001018	1815	0.004531	52	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-190b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-522	View Gene Set	0.0001217	2524	0.005314	53	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-522 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-141	View Gene Set	0.0001302	2068	0.005516	54	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-141 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-23a	View Gene Set	0.0001311	1884	0.005516	54	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-144	View Gene Set	0.0001349	1165	0.005575	56	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-200a	View Gene Set	0.0001383	1698	0.005614	57	microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-23a	View Gene Set	0.0001414	1137	0.00564	58	microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-802	View Gene Set	0.0001479	2387	0.005801	59	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-802 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-134	View Gene Set	0.0001606	301	0.006193	60	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-134 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-203	View Gene Set	0.0002021	1225	0.007665	61	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-203 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-141	View Gene Set	0.0002211	2349	0.008217	62	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-141 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-203	View Gene Set	0.0002237	1581	0.008217	62	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-203 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-203	View Gene Set	0.000247	1447	0.00893	64	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-203 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200b	View Gene Set	0.0002538	2444	0.009035	65	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-23a	View Gene Set	0.0002688	1626	0.009425	66	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-494	View Gene Set	0.0002788	2522	0.00963	67	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-494 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-194	View Gene Set	0.0002917	1752	0.009927	68	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-186	View Gene Set	0.0003275	1780	0.01098	69	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-186 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-320	View Gene Set	0.0003529	1474	0.01167	70	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-320 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-194	View Gene Set	0.0003596	1348	0.01172	71	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-194	View Gene Set	0.0003866	1105	0.01242	72	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-23a	View Gene Set	0.0003946	1520	0.01251	73	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-217	View Gene Set	0.0004264	1540	0.01333	74	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-217 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-643	View Gene Set	0.0004708	1567	0.01434	75	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-643 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-499-5p	View Gene Set	0.0004674	1124	0.01434	75	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-499-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-194	View Gene Set	0.0004871	1754	0.01445	77	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-186	View Gene Set	0.0004814	1563	0.01445	77	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-186 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-496	View Gene Set	0.0005232	1630	0.01533	79	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-496 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-582-5p	View Gene Set	0.0005449	2568	0.01576	80	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-582-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-569	View Gene Set	0.0005757	1589	0.01645	81	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-569 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-340	View Gene Set	0.0005869	3099	0.01651	82	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-340	View Gene Set	0.000592	1341	0.01651	82	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-23b	View Gene Set	0.0007962	1643	0.02193	84	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-23b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-141	View Gene Set	0.0008737	1377	0.02379	85	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-141 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-653	View Gene Set	0.0009077	1955	0.02442	86	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-653 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-154	View Gene Set	0.0009235	892	0.02456	87	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-154 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-494	View Gene Set	0.0009858	2382	0.02592	88	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-494 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-200a	View Gene Set	0.001023	2189	0.0263	89	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-200b	View Gene Set	0.001017	1545	0.0263	89	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-200b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-340	View Gene Set	0.001036	3195	0.02634	91	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-21	View Gene Set	0.001049	1190	0.02639	92	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-21 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-23a	View Gene Set	0.001152	2605	0.02693	93	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-23a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-633	View Gene Set	0.001119	1943	0.02693	93	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-633 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-888	View Gene Set	0.0011	1983	0.02693	93	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-888 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-154	View Gene Set	0.001103	1537	0.02693	93	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-154 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-653	View Gene Set	0.001145	1601	0.02693	93	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-653 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-194	View Gene Set	0.001143	1092	0.02693	93	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-382	View Gene Set	0.001109	1064	0.02693	93	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-382 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-656	View Gene Set	0.001177	2395	0.02723	100	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-656 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-371-5p	View Gene Set	0.001195	1725	0.02735	101	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-371-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-340	View Gene Set	0.001206	3291	0.02735	101	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-494	View Gene Set	0.00126	2251	0.0283	103	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-494 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-23b	View Gene Set	0.001304	1870	0.02902	104	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-23b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-338-5p	View Gene Set	0.001333	2455	0.02933	105	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-338-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-507	View Gene Set	0.001394	1828	0.02933	105	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-507 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-95	View Gene Set	0.001388	1180	0.02933	105	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-95 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-21	View Gene Set	0.001385	1237	0.02933	105	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-21 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-34b	View Gene Set	0.001369	1278	0.02933	105	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-34b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-376b	View Gene Set	0.001384	1066	0.02933	105	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-376b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-515-5p	View Gene Set	0.001447	2494	0.03016	111	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-515-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200a	View Gene Set	0.001473	2347	0.03043	112	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-576-5p	View Gene Set	0.001503	2186	0.03078	113	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-576-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146a	View Gene Set	0.001675	1953	0.03399	114	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-200b	View Gene Set	0.001691	2373	0.03403	115	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-200b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-200a	View Gene Set	0.001771	2264	0.03485	116	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-499-5p	View Gene Set	0.001777	1944	0.03485	116	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-499-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-496	View Gene Set	0.001768	1171	0.03485	116	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-496 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200c	View Gene Set	0.001877	2480	0.03651	119	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200c from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-194	View Gene Set	0.001962	1760	0.03783	120	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-1	View Gene Set	0.002085	2285	0.03806	121	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-5p	View Gene Set	0.002064	2931	0.03806	121	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-154	View Gene Set	0.002105	1594	0.03806	121	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-154 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-186	View Gene Set	0.002099	3330	0.03806	121	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-186 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-21	View Gene Set	0.00205	1249	0.03806	121	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-21 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-371-5p	View Gene Set	0.002043	1292	0.03806	121	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-371-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p	View Gene Set	0.002077	1422	0.03806	121	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-340	View Gene Set	0.002003	1956	0.03806	121	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-577	View Gene Set	0.002134	3197	0.03828	129	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-577 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-499-5p	View Gene Set	0.002255	1960	0.04013	130	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-499-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-186	View Gene Set	0.002312	3195	0.04049	131	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-186 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-340	View Gene Set	0.002321	2801	0.04049	131	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-200a	View Gene Set	0.002327	682	0.04049	131	microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-200a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-496	View Gene Set	0.002378	1574	0.04106	134	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-496 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-23b	View Gene Set	0.002438	1595	0.0418	135	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-23b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-361-5p	View Gene Set	0.002539	1013	0.0432	136	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-361-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-549	View Gene Set	0.002688	1466	0.04508	137	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-549 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-30b	View Gene Set	0.002679	2390	0.04508	137	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-30b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-451	View Gene Set	0.002754	788	0.04585	139	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-451 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-374b	View Gene Set	0.00278	2404	0.04595	140	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-374b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-556-3p	View Gene Set	0.002821	1518	0.0463	141	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-556-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-200c	View Gene Set	0.002863	2013	0.04666	142	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-200c from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-217	View Gene Set	0.002973	1531	0.0481	143	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-217 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-203	View Gene Set	0.003019	2930	0.04818	144	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-203 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-340	View Gene Set	0.003016	2961	0.04818	144	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-374b	View Gene Set	0.003092	1555	0.049	146	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-374b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-194	View Gene Set	0.003147	1350	0.04923	147	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-194	View Gene Set	0.003149	558	0.04923	147	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-194 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-410	View Gene Set	0.003181	1731	0.0494	149	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-410 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-21	View Gene Set	0.003213	1669	0.04957	150	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-21 from miRNAtargetUnion	www.mirbase.org...

Results

AFA results for: TSA1-e06.ls

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down