Results

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Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c3.MIR
Go to: Gene Set Collection: Broad.c3.TFT
Go to: Gene Set Collection: Broad.c4.CGN
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: Broad.c5.CC
Go to: Gene Set Collection: Broad.c5.MF
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: ppi.BioGRID
Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.cell-map
Go to: Gene Set Collection: pathwayCommons.nci-nature
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: pictar.targets
Go to: Gene Set Collection: targetscan.targets
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: hprdManual.UP
Go to: Gene Set Collection: hprdManual.DIFFERENT

AFA results for: VPA2e04.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0003676 View Gene Set 3.167e-22 2979 4.231e-18 1 nucleic acid binding amigo.geneontol...
GO GO:0090304 View Gene Set 2.515e-20 3724 1.68e-16 2 nucleic acid metabolic process amigo.geneontol...
GO GO:0010467 View Gene Set 2.993e-19 3806 1.333e-15 3 gene expression amigo.geneontol...
GO GO:0005634 View Gene Set 7.978e-19 5198 2.665e-15 4 nucleus amigo.geneontol...
GO GO:0031981 View Gene Set 9.875e-18 1518 2.639e-14 5 nuclear lumen amigo.geneontol...
GO GO:0044428 View Gene Set 1.495e-17 1938 3.329e-14 6 nuclear part amigo.geneontol...
GO GO:0010468 View Gene Set 7.209e-16 2958 1.376e-12 7 regulation of gene expression amigo.geneontol...
GO GO:0016070 View Gene Set 8.6e-16 2596 1.436e-12 8 RNA metabolic process amigo.geneontol...
GO GO:0044260 View Gene Set 1.359e-15 5699 2.018e-12 9 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0006139 View Gene Set 3.937e-15 4294 5.259e-12 10 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0006350 View Gene Set 5.936e-15 2744 7.21e-12 11 transcription amigo.geneontol...
GO GO:0060255 View Gene Set 6.863e-15 3411 7.641e-12 12 regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0034645 View Gene Set 7.766e-15 3529 7.981e-12 13 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0009059 View Gene Set 9.247e-15 3597 8.824e-12 14 macromolecule biosynthetic process amigo.geneontol...
GO GO:0010556 View Gene Set 1.359e-14 2901 1.21e-11 15 regulation of macromolecule biosynthetic process amigo.geneontol...
GO GO:0005654 View Gene Set 1.638e-14 939 1.367e-11 16 nucleoplasm amigo.geneontol...
GO GO:0003723 View Gene Set 1.82e-14 732 1.43e-11 17 RNA binding amigo.geneontol...
GO GO:0070013 View Gene Set 1.87e-13 1845 1.388e-10 18 intracellular organelle lumen amigo.geneontol...
GO GO:0034641 View Gene Set 2.141e-13 4584 1.506e-10 19 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0031326 View Gene Set 3.997e-13 3048 2.67e-10 20 regulation of cellular biosynthetic process amigo.geneontol...
GO GO:0045449 View Gene Set 1.117e-12 2647 6.488e-10 21 regulation of transcription amigo.geneontol...
GO GO:0080090 View Gene Set 1.099e-12 3585 6.488e-10 21 regulation of primary metabolic process amigo.geneontol...
GO GO:0043233 View Gene Set 1.07e-12 1881 6.488e-10 21 organelle lumen amigo.geneontol...
GO GO:0009889 View Gene Set 1.193e-12 3070 6.643e-10 24 regulation of biosynthetic process amigo.geneontol...
GO GO:0043170 View Gene Set 1.614e-12 6274 8.624e-10 25 macromolecule metabolic process amigo.geneontol...
GO GO:0019219 View Gene Set 3.347e-12 3040 1.72e-09 26 regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0006807 View Gene Set 4.192e-12 4698 2.074e-09 27 nitrogen compound metabolic process amigo.geneontol...
GO GO:0031974 View Gene Set 5.172e-12 1917 2.468e-09 28 membrane-enclosed lumen amigo.geneontol...
GO GO:0005730 View Gene Set 6.386e-12 734 2.942e-09 29 nucleolus amigo.geneontol...
GO GO:0051171 View Gene Set 9.506e-12 3066 4.233e-09 30 regulation of nitrogen compound metabolic process amigo.geneontol...
GO GO:0003677 View Gene Set 2.052e-11 2028 8.844e-09 31 DNA binding amigo.geneontol...
GO GO:0006396 View Gene Set 7.85e-11 578 3.277e-08 32 RNA processing amigo.geneontol...
GO GO:0031323 View Gene Set 1.078e-10 3768 4.366e-08 33 regulation of cellular metabolic process amigo.geneontol...
GO GO:0019222 View Gene Set 5.225e-10 4060 2.053e-07 34 regulation of metabolic process amigo.geneontol...
GO GO:0044451 View Gene Set 1.185e-09 600 4.524e-07 35 nucleoplasm part amigo.geneontol...
GO GO:0006325 View Gene Set 5.048e-09 425 1.873e-06 36 chromatin organization amigo.geneontol...
GO GO:0051276 View Gene Set 6.295e-09 548 2.273e-06 37 chromosome organization amigo.geneontol...
GO GO:0044249 View Gene Set 7.799e-09 4326 2.742e-06 38 cellular biosynthetic process amigo.geneontol...
GO GO:0016071 View Gene Set 8.196e-09 381 2.808e-06 39 mRNA metabolic process amigo.geneontol...
GO GO:0031327 View Gene Set 1.854e-08 629 6.191e-06 40 negative regulation of cellular biosynthetic process amigo.geneontol...
GO GO:0009058 View Gene Set 3.602e-08 4436 1.174e-05 41 biosynthetic process amigo.geneontol...
GO GO:0006397 View Gene Set 4.423e-08 317 1.407e-05 42 mRNA processing amigo.geneontol...
GO GO:0009890 View Gene Set 5.582e-08 642 1.734e-05 43 negative regulation of biosynthetic process amigo.geneontol...
GO GO:0010629 View Gene Set 5.859e-08 573 1.779e-05 44 negative regulation of gene expression amigo.geneontol...
GO GO:0006351 View Gene Set 6.729e-08 1949 1.998e-05 45 transcription DNA-dependent amigo.geneontol...
GO GO:0032774 View Gene Set 9.851e-08 1953 2.861e-05 46 RNA biosynthetic process amigo.geneontol...
GO GO:0008380 View Gene Set 1.151e-07 300 3.26e-05 47 RNA splicing amigo.geneontol...
GO GO:0010558 View Gene Set 1.171e-07 611 3.26e-05 47 negative regulation of macromolecule biosynthetic process amigo.geneontol...
GO GO:0010605 View Gene Set 4.431e-07 827 0.0001208 49 negative regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0009892 View Gene Set 4.637e-07 889 0.0001239 50 negative regulation of metabolic process amigo.geneontol...
GO GO:0045934 View Gene Set 6.299e-07 574 0.000165 51 negative regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0006996 View Gene Set 6.496e-07 1501 0.0001669 52 organelle organization amigo.geneontol...
GO GO:0051252 View Gene Set 7.002e-07 1869 0.0001765 53 regulation of RNA metabolic process amigo.geneontol...
GO GO:0051172 View Gene Set 1.107e-06 580 0.000274 54 negative regulation of nitrogen compound metabolic process amigo.geneontol...
GO GO:0016481 View Gene Set 1.141e-06 512 0.0002771 55 negative regulation of transcription amigo.geneontol...
GO GO:0016568 View Gene Set 1.285e-06 324 0.0003066 56 chromatin modification amigo.geneontol...
GO GO:0016607 View Gene Set 1.389e-06 116 0.0003257 57 nuclear speck amigo.geneontol...
GO GO:0016604 View Gene Set 1.564e-06 198 0.0003603 58 nuclear body amigo.geneontol...
GO GO:0006366 View Gene Set 2.036e-06 919 0.0004611 59 transcription from RNA polymerase II promoter amigo.geneontol...
GO GO:0016585 View Gene Set 2.422e-06 84 0.0005392 60 chromatin remodeling complex amigo.geneontol...
GO GO:0031324 View Gene Set 2.88e-06 809 0.0006307 61 negative regulation of cellular metabolic process amigo.geneontol...
GO GO:0006355 View Gene Set 3.602e-06 1820 0.0007761 62 regulation of transcription DNA-dependent amigo.geneontol...
GO GO:0030529 View Gene Set 3.688e-06 504 0.0007822 63 ribonucleoprotein complex amigo.geneontol...
GO GO:0006338 View Gene Set 8.531e-06 59 0.001781 64 chromatin remodeling amigo.geneontol...
GO GO:0022613 View Gene Set 1.307e-05 194 0.002686 65 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0030528 View Gene Set 1.398e-05 950 0.002831 66 transcription regulator activity amigo.geneontol...
GO GO:0010628 View Gene Set 1.463e-05 632 0.002917 67 positive regulation of gene expression amigo.geneontol...
GO GO:0045941 View Gene Set 1.831e-05 599 0.003598 68 positive regulation of transcription amigo.geneontol...
GO GO:0065004 View Gene Set 2.229e-05 99 0.004316 69 protein-DNA complex assembly amigo.geneontol...
GO GO:0034621 View Gene Set 2.403e-05 458 0.004587 70 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0006357 View Gene Set 3.677e-05 760 0.006855 71 regulation of transcription from RNA polymerase II promoter amigo.geneontol...
GO GO:0070603 View Gene Set 3.694e-05 21 0.006855 71 SWI/SNF-type complex amigo.geneontol...
GO GO:0000183 View Gene Set 3.866e-05 9 0.007076 73 chromatin silencing at rDNA amigo.geneontol...
GO GO:0034728 View Gene Set 4.301e-05 93 0.007765 74 nucleosome organization amigo.geneontol...
GO GO:0043228 View Gene Set 5.091e-05 2690 0.008833 75 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 5.091e-05 2690 0.008833 75 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0071564 View Gene Set 5.026e-05 11 0.008833 75 npBAF complex amigo.geneontol...
GO GO:0045893 View Gene Set 5.833e-05 516 0.009991 78 positive regulation of transcription DNA-dependent amigo.geneontol...
GO GO:0006333 View Gene Set 6.079e-05 129 0.01015 79 chromatin assembly or disassembly amigo.geneontol...
GO GO:0005694 View Gene Set 6.049e-05 507 0.01015 79 chromosome amigo.geneontol...
GO GO:0000123 View Gene Set 6.608e-05 50 0.0109 81 histone acetyltransferase complex amigo.geneontol...
GO GO:0010557 View Gene Set 7.27e-05 702 0.01185 82 positive regulation of macromolecule biosynthetic process amigo.geneontol...
GO GO:0051254 View Gene Set 7.437e-05 522 0.01197 83 positive regulation of RNA metabolic process amigo.geneontol...
GO GO:0016514 View Gene Set 8.915e-05 15 0.01418 84 SWI/SNF complex amigo.geneontol...
GO GO:0045935 View Gene Set 9.502e-05 680 0.01494 85 positive regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0010608 View Gene Set 0.0001302 247 0.02022 86 posttranscriptional regulation of gene expression amigo.geneontol...
GO GO:0071565 View Gene Set 0.0001543 12 0.02369 87 nBAF complex amigo.geneontol...
GO GO:0003727 View Gene Set 0.0001685 28 0.02558 88 single-stranded RNA binding amigo.geneontol...
GO GO:0031497 View Gene Set 0.0001969 87 0.02955 89 chromatin assembly amigo.geneontol...
GO GO:0071103 View Gene Set 0.0002093 140 0.03107 90 DNA conformation change amigo.geneontol...
GO GO:0006376 View Gene Set 0.0002124 15 0.03119 91 mRNA splice site selection amigo.geneontol...
GO GO:0031328 View Gene Set 0.0002241 746 0.03219 92 positive regulation of cellular biosynthetic process amigo.geneontol...
GO GO:0031365 View Gene Set 0.0002239 16 0.03219 92 N-terminal protein amino acid modification amigo.geneontol...
GO GO:0000375 View Gene Set 0.0002274 106 0.03232 94 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0044237 View Gene Set 0.000242 7431 0.03403 95 cellular metabolic process amigo.geneontol...
GO GO:0051173 View Gene Set 0.0002617 701 0.03618 96 positive regulation of nitrogen compound metabolic process amigo.geneontol...
GO GO:0005681 View Gene Set 0.0002627 135 0.03618 96 spliceosomal complex amigo.geneontol...
GO GO:0005677 View Gene Set 0.0002745 7 0.03704 98 chromatin silencing complex amigo.geneontol...
GO GO:0070491 View Gene Set 0.0002736 14 0.03704 98 transcription repressor binding amigo.geneontol...
GO GO:0008134 View Gene Set 0.0002781 525 0.03715 100 transcription factor binding amigo.geneontol...
GO GO:0043193 View Gene Set 0.0002923 147 0.03867 101 positive regulation of gene-specific transcription amigo.geneontol...
GO GO:0006334 View Gene Set 0.0003003 83 0.03934 102 nucleosome assembly amigo.geneontol...
GO GO:0006417 View Gene Set 0.0003105 151 0.04028 103 regulation of translation amigo.geneontol...
GO GO:0044238 View Gene Set 0.0003336 7629 0.04285 104 primary metabolic process amigo.geneontol...
GO GO:0070775 View Gene Set 0.000353 7 0.04449 105 H3 histone acetyltransferase complex amigo.geneontol...
GO GO:0070776 View Gene Set 0.000353 7 0.04449 105 MOZ/MORF histone acetyltransferase complex amigo.geneontol...
GO GO:0045892 View Gene Set 0.0003589 413 0.04481 107 negative regulation of transcription DNA-dependent amigo.geneontol...
GO GO:0010604 View Gene Set 0.0003841 976 0.04752 108 positive regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0031325 View Gene Set 0.0003963 999 0.04858 109 positive regulation of cellular metabolic process amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 4.944e-11 744 8.361e-08 1 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 1.049e-10 832 8.361e-08 1 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 8.964e-11 920 8.361e-08 1 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 3.902e-10 1582 2.333e-07 4 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN View Gene Set 7.097e-09 308 2.632e-06 5 Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 6.804e-09 1253 2.632e-06 5 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 7.703e-09 276 2.632e-06 5 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 8.826e-08 1641 2.639e-05 8 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_6_7WK_UP View Gene Set 1.579e-07 175 4.198e-05 9 Genes up-regulated during pubertal mammary gland development between week 6 and 7. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 3.096e-06 203 0.0007406 10 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_5_6WK_DN View Gene Set 4.745e-06 123 0.001032 11 Genes down-regulated during pubertal mammary gland development between week 5 and 6. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 6.766e-06 436 0.001349 12 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 8.568e-06 241 0.001519 13 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 8.893e-06 577 0.001519 13 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 2.512e-05 46 0.004006 15 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad HEDENFALK_BREAST_CANCER_BRACX_DN View Gene Set 2.993e-05 12 0.004475 16 Down-regulated genes distinguishing between two groups of non-BRCA1/BRCA2 [Gene ID=672 675] breast tumors (BRACx): group A vs group B. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 3.516e-05 418 0.004672 17 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 3.351e-05 265 0.004672 17 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad KIM_WT1_TARGETS_8HR_UP View Gene Set 5.142e-05 160 0.006474 19 Genes up-regulated in UB27 cells (osteosarcoma) at 8 hr after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 7.96e-05 359 0.00952 20 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN View Gene Set 9.11e-05 160 0.01038 21 Genes down-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2 STK6 and ZNF217 [Gene ID=4605 6790 7764] www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 0.0001209 485 0.01257 22 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_SCC_DN View Gene Set 0.0001169 96 0.01257 22 Genes down-regulated in SCC12B2 cells (squamous cell carcinoma) by UV-B irradiation. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 0.0002018 68 0.02011 24 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 0.000215 138 0.02057 25 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 0.0002397 92 0.02205 26 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 0.0003062 410 0.02713 27 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad FAELT_B_CLL_WITH_VH3_21_UP View Gene Set 0.0004384 44 0.03745 28 Genes changed in samples from B-CLL (B-cell chronic lymphocytic leukemia) using the immunoglobulin heavy chain VH3-21 gene. www.broad.mit.e...
Broad CHANDRAN_METASTASIS_TOP50_UP View Gene Set 0.000468 14 0.0386 29 Top 50 genes up-regulated in metastatic vs primary prostate cancer tumors. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 0.0005182 127 0.04132 30 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad LEE_METASTASIS_AND_RNA_PROCESSING_UP View Gene Set 0.0006638 15 0.04962 31 Components of RNA post-transcriptional modification machinery up-regulated in MDA-MB-435 cells (breast cancer) whose metastatic potential has been reduced by expression of NME1 [Gene ID=4830]. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN View Gene Set 0.0006578 256 0.04962 31 Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 6.815e-05 142 0.009194 1 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 7.859e-05 97 0.009194 1 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 4.088e-05 188 0.009194 1 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA View Gene Set 8.553e-05 21 0.009194 1 Genes involved in Deadenylation of mRNA www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 0.0003986 124 0.02856 5 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 0.0003412 128 0.02856 5 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad TTTGCAC MIR-19A MIR-19B View Gene Set 0.00122 440 0.0337 1 Targets of MicroRNA TTTGCAC MIR-19A MIR-19B www.broad.mit.e... MIR-19A... MIR-19B...
Broad AGGGCAG MIR-18A View Gene Set 0.0008777 116 0.0337 1 Targets of MicroRNA AGGGCAG MIR-18A www.broad.mit.e... MIR-18A...
Broad CAGCTTT MIR-320 View Gene Set 0.001132 220 0.0337 1 Targets of MicroRNA CAGCTTT MIR-320 www.broad.mit.e... MIR-320...
Broad ATAAGCT MIR-21 View Gene Set 0.0008383 104 0.0337 1 Targets of MicroRNA ATAAGCT MIR-21 www.broad.mit.e... MIR-21...
Broad TTTGCAG MIR-518A-2 View Gene Set 0.0004458 174 0.0337 1 Targets of MicroRNA TTTGCAG MIR-518A-2 www.broad.mit.e... MIR-518A-2...
Broad CACCAGC MIR-138 View Gene Set 0.0003905 173 0.0337 1 Targets of MicroRNA CACCAGC MIR-138 www.broad.mit.e... MIR-138...
Broad TGTGTGA MIR-377 View Gene Set 0.0009745 162 0.0337 1 Targets of MicroRNA TGTGTGA MIR-377 www.broad.mit.e... MIR-377...
Broad GTAAACC MIR-299-5P View Gene Set 0.0008016 44 0.0337 1 Targets of MicroRNA GTAAACC MIR-299-5P www.broad.mit.e... MIR-299-5P...
Broad ATGTACA MIR-493 View Gene Set 0.001608 261 0.03948 9 Targets of MicroRNA ATGTACA MIR-493 www.broad.mit.e... MIR-493...
Broad ACACTGG MIR-199A MIR-199B View Gene Set 0.001829 134 0.04043 10 Targets of MicroRNA ACACTGG MIR-199A MIR-199B www.broad.mit.e... MIR-199A... MIR-199B...
Broad TCCGTCC MIR-184 View Gene Set 0.002262 10 0.04544 11 Targets of MicroRNA TCCGTCC MIR-184 www.broad.mit.e... MIR-184...
Broad CCTGCTG MIR-214 View Gene Set 0.002489 194 0.04583 12 Targets of MicroRNA CCTGCTG MIR-214 www.broad.mit.e... MIR-214...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad V$NFMUE1_Q6 View Gene Set 1.311e-05 175 0.004031 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 1.138e-05 580 0.004031 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad ACAWNRNSRCGG_UNKNOWN View Gene Set 3.089e-05 50 0.004415 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWNRNSRCGG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$GABP_B View Gene Set 5.722e-05 162 0.004415 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 5.744e-05 169 0.004415 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 5.744e-05 169 0.004415 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 5.744e-05 169 0.004415 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$EGR_Q6 View Gene Set 4.669e-05 208 0.004415 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GTGGGSGCRRS which matches annotation for EGR1: early growth response 1<br> EGR2: early growth response 2 (Krox-20 homolog Drosophila)<br> EGR3: early growth response 3 www.broad.mit.e...
Broad V$E2F_02 View Gene Set 0.0001001 169 0.006839 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.0001188 289 0.007309 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$MYCMAX_01 View Gene Set 0.0001397 189 0.007811 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad V$E2F_Q6_01 View Gene Set 0.0001677 167 0.008595 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$SPZ1_01 View Gene Set 0.0001923 189 0.008726 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif DNNGGRGGGWWNNNN which matches annotation for SPZ1: spermatogenic leucine zipper 1 www.broad.mit.e...
Broad GGCKCATGS_UNKNOWN View Gene Set 0.0001986 43 0.008726 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCKCATGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGCNKCCATNK_UNKNOWN View Gene Set 0.0002221 84 0.009106 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNKCCATNK. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 0.0002432 167 0.009348 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$HIF1_Q5 View Gene Set 0.0003005 176 0.01035 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGTACGTGCNGB which matches annotation for HIF1A: hypoxia-inducible factor 1 alpha subunit (basic helix-loop-helix transcription factor) www.broad.mit.e...
Broad CACGTG_V$MYC_Q2 View Gene Set 0.000303 734 0.01035 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad GATGKMRGCG_UNKNOWN View Gene Set 0.0004006 47 0.01209 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATGKMRGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F4DP1_01 View Gene Set 0.000429 174 0.01209 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN View Gene Set 0.0004324 130 0.01209 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad YGCGYRCGC_UNKNOWN View Gene Set 0.0004024 207 0.01209 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCGYRCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYCMAX_B View Gene Set 0.0004705 193 0.01258 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad V$EGR1_01 View Gene Set 0.0005705 193 0.01462 24 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WTGCGTGGGCGK which matches annotation for EGR1: early growth response 1 www.broad.mit.e...
Broad V$NMYC_01 View Gene Set 0.0008374 201 0.01907 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCCACGTGNNN which matches annotation for MYCN: v-myc myelocytomatosis viral related oncogene neuroblastoma derived (avian) www.broad.mit.e...
Broad KMCATNNWGGA_UNKNOWN View Gene Set 0.0008231 60 0.01907 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KMCATNNWGGA. Motif does not match any known transcription factor www.broad.mit.e...
Broad WWTAAGGC_UNKNOWN View Gene Set 0.0008373 118 0.01907 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif WWTAAGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$PAX2_01 View Gene Set 0.001156 36 0.02421 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNGTCANGNRTKANNNN which matches annotation for PAX2: paired box gene 2 www.broad.mit.e...
Broad CTCNANGTGNY_UNKNOWN View Gene Set 0.001181 72 0.02421 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTCNANGTGNY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NRF1_Q6 View Gene Set 0.001181 151 0.02421 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGCATGCGCR which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$E2F1_Q3 View Gene Set 0.001308 176 0.02594 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F1_Q4 View Gene Set 0.001455 178 0.02797 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad AAGWWRNYGGC_UNKNOWN View Gene Set 0.002555 85 0.04246 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AAGWWRNYGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYCMAX_02 View Gene Set 0.002546 201 0.04246 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NANCACGTGNNW which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad V$YY1_Q6 View Gene Set 0.002465 166 0.04246 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad WTGAAAT_UNKNOWN View Gene Set 0.002378 460 0.04246 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif WTGAAAT. Motif does not match any known transcription factor www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B View Gene Set 0.002545 512 0.04246 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$AP2_Q6 View Gene Set 0.002696 188 0.04363 38 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MKCCCSCNGGCG which matches annotation for GTF3A: general transcription factor IIIA www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 0.002853 165 0.04499 39 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MORF_AATF View Gene Set 5.107e-09 179 2.181e-06 1 Neighborhood of AATF www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 1.631e-07 57 3.481e-05 2 Neighborhood of TERF1 www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 1.523e-06 173 0.0001191 3 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 1.408e-06 210 0.0001191 3 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 1.452e-06 178 0.0001191 3 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 1.673e-06 120 0.0001191 3 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 5.348e-06 170 0.0003262 7 Neighborhood of RPA2 www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 1.416e-05 256 0.0005056 8 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 1.378e-05 256 0.0005056 8 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 1.421e-05 220 0.0005056 8 Neighborhood of EIF3S2 www.broad.mit.e...
Broad GCM_DENR View Gene Set 1.033e-05 40 0.0005056 8 Neighborhood of DENR www.broad.mit.e...
Broad GCM_NF2 View Gene Set 1.151e-05 235 0.0005056 8 Neighborhood of NF2 www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 2.123e-05 276 0.0006475 13 Neighborhood of GNB1 www.broad.mit.e...
Broad GCM_ING1 View Gene Set 2.004e-05 50 0.0006475 13 Neighborhood of ING1 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 2.492e-05 94 0.0007095 15 Neighborhood of RAF1 www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 3.331e-05 222 0.0008889 16 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 3.811e-05 71 0.0009572 17 Neighborhood of BMI1 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 4.897e-05 63 0.001162 18 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 6.979e-05 316 0.001568 19 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 0.0001007 220 0.002149 20 Neighborhood of DDB1 www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 0.0001206 51 0.002453 21 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 0.0001899 47 0.003379 22 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_PHB View Gene Set 0.0001832 112 0.003379 22 Neighborhood of PHB www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 0.0001795 82 0.003379 22 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 0.0002273 202 0.003882 25 Neighborhood of PRKAG1 www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 0.0003593 79 0.0059 26 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 0.0003802 149 0.006013 27 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 0.0004166 94 0.006174 28 Neighborhood of RAD54L www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 0.0004338 90 0.006174 28 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 0.0004293 119 0.006174 28 Neighborhood of AP3D1 www.broad.mit.e...
Broad MORF_USP5 View Gene Set 0.0004525 46 0.006233 31 Neighborhood of USP5 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 0.000576 76 0.007237 32 Neighborhood of CCNI www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 0.0005769 150 0.007237 32 Neighborhood of PPP1CC www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 0.0005539 72 0.007237 32 Neighborhood of APEX1 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 0.0005932 45 0.007237 32 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 0.0006221 54 0.007378 36 Neighborhood of RBBP6 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 0.0006531 39 0.007537 37 Neighborhood of DENR www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.0007315 100 0.008219 38 Neighborhood of DFFA www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.0007962 30 0.008717 39 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 0.0008772 105 0.009364 40 Neighborhood of DNMT1 www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 0.0009006 36 0.009379 41 Neighborhood of MLH1 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 0.0009801 67 0.009965 42 Neighborhood of CDC16 www.broad.mit.e...
Broad GCM_CRKL View Gene Set 0.001076 50 0.01068 43 Neighborhood of CRKL www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 0.001215 62 0.01179 44 Neighborhood of PCNA www.broad.mit.e...
Broad GCM_GSPT1 View Gene Set 0.001315 129 0.01248 45 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_REV3L View Gene Set 0.001617 52 0.01469 46 Neighborhood of REV3L www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 0.001602 52 0.01469 46 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 0.001737 145 0.01483 48 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 0.001729 208 0.01483 48 Neighborhood of UBE2I www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 0.001732 143 0.01483 48 Neighborhood of RAB10 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 0.002284 75 0.01913 51 Neighborhood of SMC4L1 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.002607 99 0.02062 52 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_CSNK1D View Gene Set 0.002597 65 0.02062 52 Neighborhood of CSNK1D www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.002559 138 0.02062 52 Neighborhood of MYST2 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 0.002857 95 0.02218 55 Neighborhood of MTA1 www.broad.mit.e...
Broad MORF_FBL View Gene Set 0.003008 121 0.02294 56 Neighborhood of FBL www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 0.003078 256 0.02306 57 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 0.003428 50 0.02524 58 Neighborhood of SNRP70 www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 0.003533 108 0.02557 59 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 0.003765 76 0.02679 60 Neighborhood of EIF4E www.broad.mit.e...
Broad GCM_CBFB View Gene Set 0.003945 59 0.02733 61 Neighborhood of CBFB www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 0.003968 47 0.02733 61 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 0.004117 54 0.0279 63 Neighborhood of DEAF1 www.broad.mit.e...
Broad MORF_DEK View Gene Set 0.004257 229 0.0284 64 Neighborhood of DEK www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 0.004619 98 0.03035 65 Neighborhood of PAPSS1 www.broad.mit.e...
Broad GNF2_TDG View Gene Set 0.004905 23 0.03173 66 Neighborhood of TDG www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 0.005541 46 0.03532 67 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_PCNA View Gene Set 0.006791 71 0.04143 68 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 0.006648 137 0.04143 68 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 0.006743 49 0.04143 68 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 0.007141 110 0.04247 71 Neighborhood of PPP2CA www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 0.007162 36 0.04247 71 Neighborhood of RRM2 www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 0.007425 174 0.04343 73 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 0.007694 53 0.0444 74 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_DDX5 View Gene Set 0.008363 54 0.04761 75 Neighborhood of DDX5 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_183 View Gene Set 5.631e-05 52 0.009798 1 Genes in module_183 www.broad.mit.e...
Broad module_198 View Gene Set 6.474e-05 288 0.009798 1 Genes in module_198 www.broad.mit.e...
Broad module_252 View Gene Set 3.986e-05 224 0.009798 1 Genes in module_252 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_METABOLIC_PROCESS View Gene Set 1.353e-09 801 1.116e-06 1 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 7.981e-08 1197 3.292e-05 2 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 7.762e-07 1623 0.0002135 3 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 1.189e-06 738 0.0002452 4 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 3.92e-06 623 0.0006467 5 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 6.49e-06 625 0.0008503 6 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 7.215e-06 601 0.0008503 6 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 1.123e-05 660 0.001158 8 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 3.179e-05 767 0.002192 9 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 2.844e-05 147 0.002192 9 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 3.189e-05 779 0.002192 9 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 2.53e-05 555 0.002192 9 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 5.196e-05 457 0.003297 13 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS View Gene Set 6.727e-05 70 0.00351 14 Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes. www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE View Gene Set 6.404e-05 72 0.00351 14 Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 6.807e-05 449 0.00351 14 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 8.307e-05 452 0.003865 17 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad MRNA_SPLICE_SITE_SELECTION View Gene Set 8.432e-05 6 0.003865 17 Genes annotated by the GO term GO:0006376. Selection of a splice site by components of the assembling spliceosome. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.0001242 74 0.005391 19 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY View Gene Set 0.0003099 59 0.01163 20 Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397 View Gene Set 0.0002845 59 0.01163 20 Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0003101 117 0.01163 20 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 0.00037 271 0.01327 23 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.001148 285 0.03947 24 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad AGING View Gene Set 0.001404 12 0.04453 25 Genes annotated by the GO term GO:0007568. The inherent decline over time from the optimal fertility and viability of early maturity that may precede death and may be preceded by other indications such as sterility. www.broad.mit.e...
Broad SMOOTH_MUSCLE_CONTRACTION_GO_0006939 View Gene Set 0.001365 12 0.04453 25 Genes annotated by the GO term GO:0006939. A process whereby force is generated within smooth muscle tissue resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step. The chemo-mechanical energy conversion step is carried out by the actin/myosin complex activity which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length. www.broad.mit.e...
Broad REPRODUCTIVE_PROCESS View Gene Set 0.001586 159 0.04673 27 Genes annotated by the GO term GO:0022414. A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. www.broad.mit.e...
Broad CHROMATIN_MODIFICATION View Gene Set 0.001562 50 0.04673 27 Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure. www.broad.mit.e...
Broad PROTEIN_COMPLEX_DISASSEMBLY View Gene Set 0.001775 14 0.04882 29 Genes annotated by the GO term GO:0043241. The disaggregation of a protein complex into its constituent components. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_DISASSEMBLY View Gene Set 0.001775 15 0.04882 29 Genes annotated by the GO term GO:0032984. The disaggregation of a macromolecular complex into its constituent components. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 1.703e-07 1353 3.967e-05 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 5.571e-07 543 6.49e-05 2 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 1.123e-05 365 0.0008721 3 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 4.541e-05 266 0.002408 4 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 6.202e-05 434 0.002408 4 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 6.202e-05 434 0.002408 4 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad CHROMATIN_REMODELING_COMPLEX View Gene Set 0.0001318 17 0.004388 7 Genes annotated by the GO term GO:0016585. Any complex that mediates dynamic changes in eukaryotic chromatin. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_BINDING View Gene Set 3.413e-06 236 0.001351 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM View Gene Set 5.521e-05 14 0.009178 2 Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 6.953e-05 587 0.009178 2 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY View Gene Set 0.000156 41 0.01545 4 Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING View Gene Set 0.0002595 39 0.02055 5 Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_ACTIVITY View Gene Set 0.0004692 340 0.03097 6 Genes annotated by the GO term GO:0003700. The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15302935 View Gene Set 1.248e-20 773 3.128e-17 1 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 1.032e-12 106 1.293e-09 2 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 4.555e-12 504 3.806e-09 3 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 1.119e-09 208 5.611e-07 4 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 15635413 View Gene Set 8.975e-10 421 5.611e-07 4 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 9.924e-08 391 4.147e-05 6 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 17289661 View Gene Set 1.207e-07 35 4.323e-05 7 Molecular composition of IMP1 ribonucleoprotein granules. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 2.174e-07 210 6.812e-05 8 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 8895581 View Gene Set 2.045e-06 12 0.0005696 9 Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 2.867e-06 22 0.0007188 10 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 16387653 View Gene Set 1.432e-05 42 0.003263 11 ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation. www.ncbi.nlm.ni...
PMID 11078522 View Gene Set 1.638e-05 12 0.003423 12 The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 2.995e-05 108 0.005188 13 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 3.104e-05 51 0.005188 13 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 16097034 View Gene Set 2.801e-05 36 0.005188 13 Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC. www.ncbi.nlm.ni...
PMID 12388589 View Gene Set 3.561e-05 17 0.005579 16 A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. www.ncbi.nlm.ni...
PMID 11238380 View Gene Set 4.981e-05 10 0.007019 17 Purification and characterization of mSin3A-containing Brg1 and hBrm chromatin remodeling complexes. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 5.039e-05 48 0.007019 17 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 15456888 View Gene Set 5.689e-05 24 0.007507 19 The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo. www.ncbi.nlm.ni...
PMID 10078207 View Gene Set 9.616e-05 10 0.01205 20 Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. www.ncbi.nlm.ni...
PMID 11734557 View Gene Set 0.0001468 12 0.01753 21 SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones. www.ncbi.nlm.ni...
PMID 11013263 View Gene Set 0.0001756 16 0.02001 22 A novel nuclear receptor corepressor complex N-CoR contains components of the mammalian SWI/SNF complex and the corepressor KAP-1. www.ncbi.nlm.ni...
PMID 11784859 View Gene Set 0.0001957 16 0.02134 23 Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1). www.ncbi.nlm.ni...
PMID 8590280 View Gene Set 0.0003434 41 0.03587 24 Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 15616580 View Gene Set 0.0003601 13 0.03611 25 Histone modifications defining active genes persist after transcriptional and mitotic inactivation. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 0.0004307 242 0.03999 26 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 16083285 View Gene Set 0.0004195 59 0.03999 26 Global phosphoproteome of HT-29 human colon adenocarcinoma cells. www.ncbi.nlm.ni...
PMID 12665591 View Gene Set 0.0005102 10 0.04568 28 Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 1.876e-10 229 1.379e-07 1 RRM expasy.org/pros...
Null PS00633 View Gene Set 9.146e-07 26 0.0003361 2 BROMODOMAIN_1 expasy.org/pros...
Null PS50014 View Gene Set 4.729e-05 41 0.01159 3 BROMODOMAIN_2 expasy.org/pros...
Null PS50128 View Gene Set 0.0002767 6 0.04067 4 SURP expasy.org/pros...
Null PS50171 View Gene Set 0.0002594 9 0.04067 4 ZF_MATRIN expasy.org/pros...
Null PS00028 View Gene Set 0.0004024 830 0.04225 6 ZINC_FINGER_C2H2_1 expasy.org/pros...
Null PS50157 View Gene Set 0.0003635 811 0.04225 6 ZINC_FINGER_C2H2_2 expasy.org/pros...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 1.488e-10 236 3.418e-07 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 5.223e-07 35 0.0005999 2 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 2.87e-06 35 0.002197 3 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 1.864e-05 53 0.01071 4 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.HDAC3 View Gene Set 3.044e-05 92 0.01398 5 Protein-protein-interaction for HDAC3 www.ncbi.nlm.ni...
Null ppi.KLF1 View Gene Set 4.951e-05 13 0.01895 6 Protein-protein-interaction for KLF1 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 6.491e-05 42 0.0213 7 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.SS18L1 View Gene Set 9.079e-05 15 0.02317 8 Protein-protein-interaction for SS18L1 www.ncbi.nlm.ni...
Null ppi.TAF6 View Gene Set 8.367e-05 19 0.02317 8 Protein-protein-interaction for TAF6 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0001359 42 0.03122 10 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 0.000173 31 0.03613 11 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.SF3B1 View Gene Set 0.0002266 24 0.04337 12 Protein-protein-interaction for SF3B1 www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0002693 104 0.0444 13 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.KPNA2 View Gene Set 0.0002746 14 0.0444 13 Protein-protein-interaction for KPNA2 www.ncbi.nlm.ni...
Null ppi.MEN1 View Gene Set 0.0003034 14 0.0444 13 Protein-protein-interaction for MEN1 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 0.0003206 147 0.0444 13 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.BAZ1B View Gene Set 0.0003286 30 0.0444 13 Protein-protein-interaction for BAZ1B www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 3.237e-10 251 1.163e-06 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 2.949e-07 39 0.0005299 2 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 2.87e-06 35 0.003438 3 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.PABPC1 View Gene Set 1.162e-05 37 0.01044 4 Protein-protein-interaction for PABPC1 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 3.577e-05 50 0.02571 5 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.KLF1 View Gene Set 4.846e-05 14 0.02777 6 Protein-protein-interaction for KLF1 www.ncbi.nlm.ni...
Null ppi.KAT2A View Gene Set 5.41e-05 14 0.02777 6 Protein-protein-interaction for KAT2A www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 6.491e-05 42 0.02916 8 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 7.466e-05 35 0.02966 9 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 9.047e-05 116 0.02966 9 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.SS18L1 View Gene Set 9.079e-05 15 0.02966 9 Protein-protein-interaction for SS18L1 www.ncbi.nlm.ni...
Null ppi.MEN1 View Gene Set 0.0001489 16 0.0446 12 Protein-protein-interaction for MEN1 www.ncbi.nlm.ni...
Null ppi.TAF6 View Gene Set 0.0001705 23 0.04714 13 Protein-protein-interaction for TAF6 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null NOTCH View Gene Set 0.003322 58 0.03322 1 CELL_MAP - NOTCH gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null C-MYC pathway View Gene Set 4.556e-06 149 0.0008474 1 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null Signaling events mediated by HDAC Class I View Gene Set 2.803e-05 114 0.002607 2 NCI_NATURE - Signaling events mediated by HDAC Class I gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional activation View Gene Set 8.56e-05 80 0.00398 3 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null Regulation of Telomerase View Gene Set 7.148e-05 68 0.00398 3 NCI_NATURE - Regulation of Telomerase gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null mRNA Splicing - Major Pathway View Gene Set 4.733e-05 107 0.02388 1 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 4.733e-05 107 0.02388 1 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 6.902e-05 185 0.02388 1 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null Deadenylation of mRNA View Gene Set 8.553e-05 22 0.02388 1 REACTOME - Deadenylation of mRNA gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 0.000209 158 0.03891 5 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 0.0001978 138 0.03891 5 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1254 View Gene Set 3.152e-05 1726 0.02134 1 microRNA targets for hsa-miR-1254 from miranda.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 0.0001195 2815 0.02696 2 microRNA targets for hsa-miR-608 from miranda.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 8.792e-05 2291 0.02696 2 microRNA targets for hsa-miR-637 from miranda.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-138 View Gene Set 6.834e-06 409 0.001216 1 microRNA targets for hsa-miR-138 from pictar.targets www.mirbase.org...
Null hsa-miR-31 View Gene Set 0.0001736 164 0.01545 2 microRNA targets for hsa-miR-31 from pictar.targets www.mirbase.org...
Null hsa-miR-188 View Gene Set 0.0003988 120 0.01842 3 microRNA targets for hsa-miR-188 from pictar.targets www.mirbase.org...
Null hsa-miR-205 View Gene Set 0.0005736 237 0.01842 3 microRNA targets for hsa-miR-205 from pictar.targets www.mirbase.org...
Null hsa-miR-214 View Gene Set 0.0005978 420 0.01842 3 microRNA targets for hsa-miR-214 from pictar.targets www.mirbase.org...
Null hsa-miR-299-5p View Gene Set 0.0008279 163 0.01842 3 microRNA targets for hsa-miR-299-5p from pictar.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 0.0006577 355 0.01842 3 microRNA targets for hsa-miR-302c from pictar.targets www.mirbase.org...
Null hsa-miR-330 View Gene Set 0.0008016 352 0.01842 3 microRNA targets for hsa-miR-330 from pictar.targets www.mirbase.org...
Null hsa-miR-129 View Gene Set 0.001236 207 0.02199 9 microRNA targets for hsa-miR-129 from pictar.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 0.001211 375 0.02199 9 microRNA targets for hsa-miR-302d from pictar.targets www.mirbase.org...
Null hsa-miR-103 View Gene Set 0.004181 606 0.04033 11 microRNA targets for hsa-miR-103 from pictar.targets www.mirbase.org...
Null hsa-miR-107 View Gene Set 0.0038 613 0.04033 11 microRNA targets for hsa-miR-107 from pictar.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.004198 431 0.04033 11 microRNA targets for hsa-miR-144 from pictar.targets www.mirbase.org...
Null hsa-miR-17-5p View Gene Set 0.003992 602 0.04033 11 microRNA targets for hsa-miR-17-5p from pictar.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.004713 601 0.04033 11 microRNA targets for hsa-miR-20b from pictar.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.004758 146 0.04033 11 microRNA targets for hsa-miR-21 from pictar.targets www.mirbase.org...
Null hsa-miR-215 View Gene Set 0.004662 74 0.04033 11 microRNA targets for hsa-miR-215 from pictar.targets www.mirbase.org...
Null hsa-miR-28 View Gene Set 0.003453 128 0.04033 11 microRNA targets for hsa-miR-28 from pictar.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.002808 374 0.04033 11 microRNA targets for hsa-miR-302a from pictar.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.004035 351 0.04033 11 microRNA targets for hsa-miR-302b from pictar.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 0.003904 405 0.04033 11 microRNA targets for hsa-miR-320 from pictar.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 0.006 136 0.04855 22 microRNA targets for hsa-miR-223 from pictar.targets www.mirbase.org...

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-599 View Gene Set 1.368e-05 141 0.003337 1 microRNA targets for hsa-miR-599 from targetscan.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 5.517e-05 638 0.004487 2 microRNA targets for hsa-miR-300 from targetscan.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 5.517e-05 638 0.004487 2 microRNA targets for hsa-miR-381 from targetscan.targets www.mirbase.org...
Null hsa-miR-129-5p View Gene Set 7.96e-05 348 0.004856 4 microRNA targets for hsa-miR-129-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.0001251 127 0.006105 5 microRNA targets for hsa-miR-382 from targetscan.targets www.mirbase.org...
Null hsa-miR-103 View Gene Set 0.0003073 472 0.006315 6 microRNA targets for hsa-miR-103 from targetscan.targets www.mirbase.org...
Null hsa-miR-107 View Gene Set 0.0003073 472 0.006315 6 microRNA targets for hsa-miR-107 from targetscan.targets www.mirbase.org...
Null hsa-miR-34a View Gene Set 0.0003106 469 0.006315 6 microRNA targets for hsa-miR-34a from targetscan.targets www.mirbase.org...
Null hsa-miR-34c-5p View Gene Set 0.0003106 469 0.006315 6 microRNA targets for hsa-miR-34c-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-449a View Gene Set 0.0003106 469 0.006315 6 microRNA targets for hsa-miR-449a from targetscan.targets www.mirbase.org...
Null hsa-miR-449b View Gene Set 0.0003106 469 0.006315 6 microRNA targets for hsa-miR-449b from targetscan.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.0003104 570 0.006315 6 microRNA targets for hsa-miR-495 from targetscan.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.0005073 936 0.009522 13 microRNA targets for hsa-miR-9 from targetscan.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 0.0006862 237 0.01196 14 microRNA targets for hsa-miR-217 from targetscan.targets www.mirbase.org...
Null hsa-miR-138 View Gene Set 0.0007429 388 0.01208 15 microRNA targets for hsa-miR-138 from targetscan.targets www.mirbase.org...
Null hsa-miR-205 View Gene Set 0.001144 288 0.01745 16 microRNA targets for hsa-miR-205 from targetscan.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 0.00146 502 0.01875 17 microRNA targets for hsa-miR-133a from targetscan.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.00146 502 0.01875 17 microRNA targets for hsa-miR-133b from targetscan.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.001401 239 0.01875 17 microRNA targets for hsa-miR-370 from targetscan.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.002028 647 0.02474 20 microRNA targets for hsa-miR-144 from targetscan.targets www.mirbase.org...
Null hsa-miR-192 View Gene Set 0.003194 89 0.03388 21 microRNA targets for hsa-miR-192 from targetscan.targets www.mirbase.org...
Null hsa-miR-215 View Gene Set 0.003194 89 0.03388 21 microRNA targets for hsa-miR-215 from targetscan.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 0.003067 360 0.03388 21 microRNA targets for hsa-miR-494 from targetscan.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.006483 893 0.03515 24 microRNA targets for hsa-miR-181a from targetscan.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.006483 893 0.03515 24 microRNA targets for hsa-miR-181b from targetscan.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.006483 893 0.03515 24 microRNA targets for hsa-miR-181c from targetscan.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.006483 893 0.03515 24 microRNA targets for hsa-miR-181d from targetscan.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-302a from targetscan.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-302b from targetscan.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-302c from targetscan.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-302d from targetscan.targets www.mirbase.org...
Null hsa-miR-302e View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-302e from targetscan.targets www.mirbase.org...
Null hsa-miR-326 View Gene Set 0.004579 275 0.03515 24 microRNA targets for hsa-miR-326 from targetscan.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 0.004579 275 0.03515 24 microRNA targets for hsa-miR-330-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-346 View Gene Set 0.006325 88 0.03515 24 microRNA targets for hsa-miR-346 from targetscan.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-372 from targetscan.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-373 from targetscan.targets www.mirbase.org...
Null hsa-miR-378 View Gene Set 0.00574 106 0.03515 24 microRNA targets for hsa-miR-378 from targetscan.targets www.mirbase.org...
Null hsa-miR-422a View Gene Set 0.00574 106 0.03515 24 microRNA targets for hsa-miR-422a from targetscan.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-520a-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-520b from targetscan.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-520c-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-520d-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 0.005962 605 0.03515 24 microRNA targets for hsa-miR-520e from targetscan.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 0.003511 176 0.03515 24 microRNA targets for hsa-miR-873 from targetscan.targets www.mirbase.org...
Null hsa-miR-128 View Gene Set 0.007956 785 0.04012 46 microRNA targets for hsa-miR-128 from targetscan.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 0.008056 248 0.04012 46 microRNA targets for hsa-miR-139-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.007745 295 0.04012 46 microRNA targets for hsa-miR-183 from targetscan.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 0.007816 236 0.04012 46 microRNA targets for hsa-miR-224 from targetscan.targets www.mirbase.org...
Null hsa-miR-184 View Gene Set 0.008348 22 0.04074 50 microRNA targets for hsa-miR-184 from targetscan.targets www.mirbase.org...
Null hsa-miR-145 View Gene Set 0.009105 526 0.04184 51 microRNA targets for hsa-miR-145 from targetscan.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.009432 539 0.04184 51 microRNA targets for hsa-miR-320a from targetscan.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.009432 539 0.04184 51 microRNA targets for hsa-miR-320b from targetscan.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.009432 539 0.04184 51 microRNA targets for hsa-miR-320c from targetscan.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.009432 539 0.04184 51 microRNA targets for hsa-miR-320d from targetscan.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.01057 937 0.04525 56 microRNA targets for hsa-miR-19a from targetscan.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.01057 937 0.04525 56 microRNA targets for hsa-miR-19b from targetscan.targets www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-138 View Gene Set 7.478e-07 654 0.00173 1 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-138 View Gene Set 3.109e-06 536 0.002398 2 microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-138 View Gene Set 2.108e-06 737 0.002398 2 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 View Gene Set 1.02e-05 2846 0.005902 4 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-205 View Gene Set 1.374e-05 635 0.006357 5 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-205 from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-107 View Gene Set 8.968e-05 918 0.03459 6 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-107 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-138 View Gene Set 0.0001451 1954 0.04121 7 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 0.0001686 2653 0.04121 7 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-138 View Gene Set 0.0001959 1314 0.04121 7 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-103 View Gene Set 0.0001658 1068 0.04121 7 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-103 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-107 View Gene Set 0.0001783 1075 0.04121 7 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-107 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-495 View Gene Set 0.0002505 2518 0.0483 12 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-495 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-138 View Gene Set 0.0002737 1835 0.04871 13 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null KitReceptor View Gene Set 0.0005278 54 0.01267 1 From NetPath for KitReceptor www.netpath.org...

Gene Set Collection: hprdManual.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null KitReceptor View Gene Set 0.001159 55 0.02782 1 From NetPath for KitReceptor www.netpath.org...