Results

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Go to: Gene Set Collection: KEGG
Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.KEGG
Go to: Gene Set Collection: Broad.c3.TFT
Go to: Gene Set Collection: Broad.c4.CGN
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: Broad.c5.CC
Go to: Gene Set Collection: Broad.c5.MF
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: ppi.BioGRID
Go to: Gene Set Collection: ppi.HPRD
Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: mirbase.targets
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: tfbsK3Z3

AFA results for: allHDACi.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 03040 View Gene Set 4.009e-09 128 8.579e-07 1 Spliceosome www.genome.jp/d...
KEGG 04080 View Gene Set 2.674e-06 272 0.0002861 2 Neuroactive ligand-receptor interaction www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0010467 View Gene Set 1.718e-16 3806 2.295e-12 1 gene expression amigo.geneontol...
GO GO:0090304 View Gene Set 4.749e-16 3724 3.172e-12 2 nucleic acid metabolic process amigo.geneontol...
GO GO:0006396 View Gene Set 5.87e-15 578 2.614e-11 3 RNA processing amigo.geneontol...
GO GO:0003723 View Gene Set 2.318e-13 732 7.741e-10 4 RNA binding amigo.geneontol...
GO GO:0044428 View Gene Set 5.164e-13 1938 1.38e-09 5 nuclear part amigo.geneontol...
GO GO:0016071 View Gene Set 1.026e-12 381 2.284e-09 6 mRNA metabolic process amigo.geneontol...
GO GO:0006397 View Gene Set 1.241e-12 317 2.369e-09 7 mRNA processing amigo.geneontol...
GO GO:0016070 View Gene Set 2.404e-12 2596 4.016e-09 8 RNA metabolic process amigo.geneontol...
GO GO:0006139 View Gene Set 3.337e-12 4294 4.953e-09 9 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0003676 View Gene Set 7.716e-12 2979 1.031e-08 10 nucleic acid binding amigo.geneontol...
GO GO:0031981 View Gene Set 3.347e-11 1518 4.066e-08 11 nuclear lumen amigo.geneontol...
GO GO:0034641 View Gene Set 3.691e-11 4584 4.109e-08 12 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0030529 View Gene Set 3.787e-10 504 3.891e-07 13 ribonucleoprotein complex amigo.geneontol...
GO GO:0006807 View Gene Set 4.664e-10 4698 4.451e-07 14 nitrogen compound metabolic process amigo.geneontol...
GO GO:0043170 View Gene Set 6.04e-10 6274 5.379e-07 15 macromolecule metabolic process amigo.geneontol...
GO GO:0044260 View Gene Set 1.628e-09 5699 1.359e-06 16 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0005634 View Gene Set 2.495e-09 5198 1.961e-06 17 nucleus amigo.geneontol...
GO GO:0008380 View Gene Set 2.744e-09 300 2.037e-06 18 RNA splicing amigo.geneontol...
GO GO:0000375 View Gene Set 4.855e-09 106 3.414e-06 19 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0005681 View Gene Set 5.786e-09 135 3.865e-06 20 spliceosomal complex amigo.geneontol...
GO GO:0043233 View Gene Set 3.511e-08 1881 2.223e-05 21 organelle lumen amigo.geneontol...
GO GO:0070013 View Gene Set 3.661e-08 1845 2.223e-05 21 intracellular organelle lumen amigo.geneontol...
GO GO:0005730 View Gene Set 3.884e-08 734 2.256e-05 23 nucleolus amigo.geneontol...
GO GO:0010468 View Gene Set 4.641e-08 2958 2.48e-05 24 regulation of gene expression amigo.geneontol...
GO GO:0022613 View Gene Set 4.642e-08 194 2.48e-05 24 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0005654 View Gene Set 1.373e-07 939 7.057e-05 26 nucleoplasm amigo.geneontol...
GO GO:0060255 View Gene Set 1.627e-07 3411 8.05e-05 27 regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0031974 View Gene Set 1.688e-07 1917 8.052e-05 28 membrane-enclosed lumen amigo.geneontol...
GO GO:0009059 View Gene Set 2.284e-07 3597 0.0001052 29 macromolecule biosynthetic process amigo.geneontol...
GO GO:0034645 View Gene Set 2.914e-07 3529 0.0001298 30 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0006350 View Gene Set 3.149e-07 2744 0.0001357 31 transcription amigo.geneontol...
GO GO:0009889 View Gene Set 8.036e-07 3070 0.0003183 32 regulation of biosynthetic process amigo.geneontol...
GO GO:0031326 View Gene Set 7.999e-07 3048 0.0003183 32 regulation of cellular biosynthetic process amigo.geneontol...
GO GO:0016604 View Gene Set 8.101e-07 198 0.0003183 32 nuclear body amigo.geneontol...
GO GO:0080090 View Gene Set 8.842e-07 3585 0.0003375 35 regulation of primary metabolic process amigo.geneontol...
GO GO:0000377 View Gene Set 1.022e-06 97 0.000369 36 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 1.022e-06 97 0.000369 36 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0051171 View Gene Set 1.485e-06 3066 0.000522 38 regulation of nitrogen compound metabolic process amigo.geneontol...
GO GO:0006376 View Gene Set 1.927e-06 15 0.0006421 39 mRNA splice site selection amigo.geneontol...
GO GO:0010556 View Gene Set 1.914e-06 2901 0.0006421 39 regulation of macromolecule biosynthetic process amigo.geneontol...
GO GO:0045449 View Gene Set 1.97e-06 2647 0.0006421 39 regulation of transcription amigo.geneontol...
GO GO:0019219 View Gene Set 3.345e-06 3040 0.001064 42 regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0016568 View Gene Set 7.142e-06 324 0.002219 43 chromatin modification amigo.geneontol...
GO GO:0034470 View Gene Set 7.594e-06 193 0.002306 44 ncRNA processing amigo.geneontol...
GO GO:0044451 View Gene Set 1.044e-05 600 0.003099 45 nucleoplasm part amigo.geneontol...
GO GO:0000070 View Gene Set 1.22e-05 37 0.003467 46 mitotic sister chromatid segregation amigo.geneontol...
GO GO:0000278 View Gene Set 1.216e-05 489 0.003467 46 mitotic cell cycle amigo.geneontol...
GO GO:0000819 View Gene Set 1.607e-05 38 0.004473 48 sister chromatid segregation amigo.geneontol...
GO GO:0016563 View Gene Set 1.902e-05 430 0.005186 49 transcription activator activity amigo.geneontol...
GO GO:0000123 View Gene Set 2.537e-05 50 0.006779 50 histone acetyltransferase complex amigo.geneontol...
GO GO:0022618 View Gene Set 2.715e-05 76 0.007111 51 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0000245 View Gene Set 4.027e-05 34 0.01035 52 spliceosome assembly amigo.geneontol...
GO GO:0016741 View Gene Set 9.068e-05 179 0.02286 53 transferase activity transferring one-carbon groups amigo.geneontol...
GO GO:0030528 View Gene Set 0.0001009 950 0.02496 54 transcription regulator activity amigo.geneontol...
GO GO:0034660 View Gene Set 0.0001117 236 0.02666 55 ncRNA metabolic process amigo.geneontol...
GO GO:0008168 View Gene Set 0.0001118 176 0.02666 55 methyltransferase activity amigo.geneontol...
GO GO:0016607 View Gene Set 0.0001211 116 0.02838 57 nuclear speck amigo.geneontol...
GO GO:0019222 View Gene Set 0.0001402 4060 0.03218 58 regulation of metabolic process amigo.geneontol...
GO GO:0031323 View Gene Set 0.0001421 3768 0.03218 58 regulation of cellular metabolic process amigo.geneontol...
GO GO:0042254 View Gene Set 0.0001512 130 0.03367 60 ribosome biogenesis amigo.geneontol...
GO GO:0003677 View Gene Set 0.0001996 2028 0.04372 61 DNA binding amigo.geneontol...
GO GO:0015030 View Gene Set 0.0002118 43 0.04564 62 Cajal body amigo.geneontol...
GO GO:0000280 View Gene Set 0.0002262 276 0.04721 63 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 0.0002262 276 0.04721 63 mitosis amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr22q13 View Gene Set 9.347e-06 179 0.002787 1 Genes in cytogenetic band chr22q13 www.broad.mit.e...
Broad chr19q13 View Gene Set 1.71e-05 765 0.002787 1 Genes in cytogenetic band chr19q13 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SHEN_SMARCA2_TARGETS_DN View Gene Set 5.681e-24 334 1.359e-20 1 Genes whose expression negatively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN View Gene Set 4.555e-17 308 5.448e-14 2 Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 2.348e-10 744 1.872e-07 3 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 7.375e-10 1582 4.41e-07 4 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 1.523e-09 143 7.285e-07 5 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 2.753e-09 138 1.098e-06 6 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 3.762e-09 62 1.286e-06 7 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 6.268e-08 265 1.874e-05 8 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 7.806e-08 80 2.075e-05 9 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN View Gene Set 2.237e-07 51 5.352e-05 10 Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC). www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 3.229e-07 243 7.022e-05 11 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 4.536e-07 138 8.906e-05 12 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP View Gene Set 4.84e-07 53 8.906e-05 12 The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 1.546e-06 1375 0.0002311 14 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 1.483e-06 276 0.0002311 14 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 1.389e-06 331 0.0002311 14 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 1.81e-06 1253 0.0002546 17 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 2.623e-06 577 0.0003486 18 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 3.541e-06 92 0.0004457 19 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 4.294e-06 164 0.0005136 20 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION View Gene Set 6.46e-06 71 0.0007358 21 Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts). www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 1.364e-05 184 0.001483 22 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN View Gene Set 1.642e-05 131 0.001707 23 Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 1.799e-05 485 0.001793 24 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad LY_AGING_OLD_DN View Gene Set 2.122e-05 47 0.002031 25 Genes up-regulated in fibroblasts from old individuals compared to those from young donors. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 3.139e-05 180 0.002836 26 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 3.201e-05 86 0.002836 26 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 5.111e-05 46 0.004366 28 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP View Gene Set 8.675e-05 365 0.007155 29 Genes distinguishing in multiple myeloma (MM) samples with higher expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 9.568e-05 53 0.007629 30 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN View Gene Set 0.0001014 160 0.007824 31 Genes down-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2 STK6 and ZNF217 [Gene ID=4605 6790 7764] www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_A_DN View Gene Set 0.0001186 17 0.008868 32 Genes down-regulated in the luminal A subtype of breast cancer. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 0.0001396 201 0.01012 33 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN View Gene Set 0.0001527 148 0.01074 34 Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 0.0001636 410 0.01118 35 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 0.0001719 1641 0.01142 36 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_DN View Gene Set 0.0001914 241 0.01237 37 Genes down-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN View Gene Set 0.0001969 61 0.01239 38 Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 0.0002233 757 0.01344 39 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 0.0002248 241 0.01344 39 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 0.0002531 92 0.01477 41 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN View Gene Set 0.0003884 15 0.02212 42 Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors. www.broad.mit.e...
Broad MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP View Gene Set 0.0004483 10 0.02494 43 Up-regulated genes predicting poor survival of patients with thyroid carcinoma. www.broad.mit.e...
Broad SUNG_METASTASIS_STROMA_DN View Gene Set 0.0004817 53 0.02505 44 Genes down-regulated in metastatic vs non-metastatic stromal cells originated from either bone or prostate tissues. www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP View Gene Set 0.000463 52 0.02505 44 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage. www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN View Gene Set 0.0004785 42 0.02505 44 Genes down-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI [Gene ID=23495]. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 0.0004997 294 0.02543 47 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION_CCNE1 View Gene Set 0.0005394 38 0.02688 48 Selected gradually up-regulated genes whose expression profile follows that of CCNE1 [Gene ID=898] in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts). www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 0.0005649 124 0.02703 49 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad KAAB_FAILED_HEART_ATRIUM_UP View Gene Set 0.0005563 36 0.02703 49 Genes up-regulated in atria of failing hearts (DCM and ICM) compared to healthy controls. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 0.0006596 178 0.03094 51 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad GENTILE_UV_RESPONSE_CLUSTER_D4 View Gene Set 0.0007645 49 0.03516 52 Cluster d4: genes progressively down-regulated in WS1 cells (fibroblast) through 12 h after irradiation with high dose UV-C. www.broad.mit.e...
Broad KALMA_E2F1_TARGETS View Gene Set 0.0007798 11 0.03519 53 DNA replication genes up-regulated in a Rat-1a cell line (fibroblast) by expression of E2F1 [Gene ID=1869]. www.broad.mit.e...
Broad LY_AGING_PREMATURE_DN View Gene Set 0.000874 24 0.03872 54 Genes down-regulated in fibroblasts from patients with Hutchinson-Gilford progeria (premature aging) compared to those from normal young individuals. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 0.0009306 537 0.03986 55 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 0.0009386 630 0.03986 55 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP View Gene Set 0.0009499 135 0.03986 55 Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability. www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP View Gene Set 0.001039 135 0.04287 58 Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360]. www.broad.mit.e...
Broad TANG_SENESCENCE_TP53_TARGETS_DN View Gene Set 0.001074 40 0.04355 59 Genes down-regulated in WI-38 cells (senescent primary fibroblasts) after inactivation of TP53 [Gene ID=7157] by GSE56 polypeptide. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 0.001128 436 0.04495 60 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP View Gene Set 0.001201 80 0.04708 61 Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_SPLICEOSOME View Gene Set 3.723e-07 118 6.925e-05 1 Spliceosome www.broad.mit.e...
Broad KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION View Gene Set 2.674e-06 272 0.0002486 2 Neuroactive ligand-receptor interaction www.broad.mit.e...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad V$E2F_Q4 View Gene Set 1.422e-06 166 0.0006615 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 2.151e-06 165 0.0006615 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 1.253e-05 289 0.002569 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 2.851e-05 167 0.004383 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01 View Gene Set 3.736e-05 122 0.004595 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad V$E2F_02 View Gene Set 5.483e-05 169 0.005182 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ZIC3_01 View Gene Set 6.585e-05 205 0.005182 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGGGKGGTC which matches annotation for ZIC3: Zic family member 3 heterotaxy 1 (odd-paired homolog Drosophila) www.broad.mit.e...
Broad TAANNYSGCG_UNKNOWN View Gene Set 6.741e-05 60 0.005182 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TAANNYSGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 9.354e-05 169 0.00523 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 9.354e-05 169 0.00523 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 9.354e-05 169 0.00523 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$NFMUE1_Q6 View Gene Set 0.0001269 175 0.006503 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1DP1RB_01 View Gene Set 0.0001591 168 0.007525 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad V$E2F1_Q6_01 View Gene Set 0.0005395 177 0.0237 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F1_Q4_01 View Gene Set 0.0006119 167 0.02509 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F4DP1_01 View Gene Set 0.0006702 174 0.02576 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GNF2_CCNA2 View Gene Set 6.212e-12 62 1.985e-09 1 Neighborhood of CCNA2 www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 9.298e-12 62 1.985e-09 1 Neighborhood of PCNA www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 9.081e-10 56 9.694e-08 3 Neighborhood of CDC2 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 6.86e-10 53 9.694e-08 3 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 1.485e-09 51 1.269e-07 5 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 3.934e-09 173 1.527e-07 6 Neighborhood of PRKDC www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 2.253e-09 52 1.527e-07 6 Neighborhood of CDC20 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 3.255e-09 56 1.527e-07 6 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 3.285e-09 35 1.527e-07 6 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 3.933e-09 36 1.527e-07 6 Neighborhood of RRM2 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 2.984e-09 75 1.527e-07 6 Neighborhood of SMC4L1 www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 5.292e-09 72 1.883e-07 12 Neighborhood of APEX1 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 1.016e-08 46 3.338e-07 13 Neighborhood of BUB1B www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 1.335e-08 50 4.072e-07 14 Neighborhood of MCM4 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 1.628e-08 45 4.636e-07 15 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 3.792e-08 82 9.679e-07 16 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 3.853e-08 43 9.679e-07 16 Neighborhood of HMMR www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 6.941e-08 256 1.647e-06 18 Neighborhood of BUB3 www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 7.837e-08 73 1.761e-06 19 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 1.091e-07 178 2.329e-06 20 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 1.566e-07 256 3.184e-06 21 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 2.067e-07 316 4.011e-06 22 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_FDXR View Gene Set 3.112e-07 205 5.737e-06 23 Neighborhood of FDXR www.broad.mit.e...
Broad MORF_AATF View Gene Set 3.224e-07 179 5.737e-06 23 Neighborhood of AATF www.broad.mit.e...
Broad MORF_FANCG View Gene Set 3.867e-07 148 6.605e-06 25 Neighborhood of FANCG www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 8.497e-07 26 1.395e-05 26 Neighborhood of MKI67 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 9.056e-07 39 1.432e-05 27 Neighborhood of DENR www.broad.mit.e...
Broad MORF_RAGE View Gene Set 1.328e-06 132 2.026e-05 28 Neighborhood of RAGE www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 1.533e-06 105 2.257e-05 29 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 1.767e-06 137 2.45e-05 30 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 1.779e-06 28 2.45e-05 30 Neighborhood of H2AFX www.broad.mit.e...
Broad GNF2_TTK View Gene Set 1.951e-06 34 2.604e-05 32 Neighborhood of TTK www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 2.127e-06 50 2.752e-05 33 Neighborhood of SNRP70 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 2.205e-06 37 2.769e-05 34 Neighborhood of CENPE www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 2.542e-06 49 3.101e-05 35 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 3.036e-06 33 3.601e-05 36 Neighborhood of PPP6C www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 3.499e-06 170 4.038e-05 37 Neighborhood of RPA2 www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 4.61e-06 276 5.18e-05 38 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 5.203e-06 61 5.697e-05 39 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_PCNA View Gene Set 5.96e-06 71 5.948e-05 40 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 5.632e-06 94 5.948e-05 40 Neighborhood of RAD54L www.broad.mit.e...
Broad MORF_RBBP8 View Gene Set 5.99e-06 190 5.948e-05 40 Neighborhood of RBBP8 www.broad.mit.e...
Broad GCM_RING1 View Gene Set 5.955e-06 106 5.948e-05 40 Neighborhood of RING1 www.broad.mit.e...
Broad MORF_LTK View Gene Set 6.148e-06 133 5.967e-05 44 Neighborhood of LTK www.broad.mit.e...
Broad MORF_FBL View Gene Set 6.378e-06 121 6.052e-05 45 Neighborhood of FBL www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 1.595e-05 29 0.0001481 46 Neighborhood of G22P1 www.broad.mit.e...
Broad GCM_DENR View Gene Set 2.244e-05 40 0.0002039 47 Neighborhood of DENR www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 2.398e-05 220 0.0002133 48 Neighborhood of EIF3S2 www.broad.mit.e...
Broad MORF_PML View Gene Set 2.451e-05 129 0.0002136 49 Neighborhood of PML www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 2.623e-05 29 0.000224 50 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 2.714e-05 110 0.0002272 51 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_MT4 View Gene Set 3.052e-05 218 0.0002506 52 Neighborhood of MT4 www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 3.318e-05 57 0.0002673 53 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 3.727e-05 220 0.0002792 54 Neighborhood of DDB1 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 3.644e-05 94 0.0002792 54 Neighborhood of RAF1 www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 3.595e-05 25 0.0002792 54 Neighborhood of BUB1 www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 3.7e-05 85 0.0002792 54 Neighborhood of HDAC1 www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 4.07e-05 45 0.0002996 58 Neighborhood of CKS2 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 4.361e-05 58 0.0003156 59 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 4.564e-05 52 0.0003248 60 Neighborhood of KPNB1 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 7.244e-05 78 0.000507 61 Neighborhood of RAN www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 7.496e-05 202 0.0005162 62 Neighborhood of PRKAG1 www.broad.mit.e...
Broad GNF2_TDG View Gene Set 8.073e-05 23 0.0005472 63 Neighborhood of TDG www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 8.201e-05 52 0.0005472 64 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 0.0001017 69 0.0006681 65 Neighborhood of SP3 www.broad.mit.e...
Broad MORF_DDX11 View Gene Set 0.0001082 138 0.0007 66 Neighborhood of DDX11 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 0.000113 26 0.0007199 67 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 0.0001277 210 0.0007903 68 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_HPX View Gene Set 0.0001263 134 0.0007903 68 Neighborhood of HPX www.broad.mit.e...
Broad MORF_FLT1 View Gene Set 0.000132 117 0.0008054 70 Neighborhood of FLT1 www.broad.mit.e...
Broad MORF_IKBKG View Gene Set 0.0001353 119 0.0008135 71 Neighborhood of IKBKG www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 0.0001383 150 0.00082 72 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 0.0001461 62 0.0008546 73 Neighborhood of CUL1 www.broad.mit.e...
Broad GCM_FANCC View Gene Set 0.0001512 120 0.0008725 74 Neighborhood of FANCC www.broad.mit.e...
Broad GNF2_GSTM1 View Gene Set 0.0001561 108 0.0008886 75 Neighborhood of GSTM1 www.broad.mit.e...
Broad MORF_JAK3 View Gene Set 0.0001641 86 0.000922 76 Neighborhood of JAK3 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 0.0001933 49 0.001072 77 Neighborhood of BUB1 www.broad.mit.e...
Broad GCM_HMGA2 View Gene Set 0.0001963 123 0.001074 78 Neighborhood of HMGA2 www.broad.mit.e...
Broad MORF_PHB View Gene Set 0.0001995 112 0.001078 79 Neighborhood of PHB www.broad.mit.e...
Broad MORF_BCL2 View Gene Set 0.0002213 202 0.001127 80 Neighborhood of BCL2 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 0.0002218 63 0.001127 80 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_CNTN1 View Gene Set 0.0002142 95 0.001127 80 Neighborhood of CNTN1 www.broad.mit.e...
Broad MORF_ORC1L View Gene Set 0.0002184 61 0.001127 80 Neighborhood of ORC1L www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 0.000221 20 0.001127 80 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_HPN View Gene Set 0.000225 132 0.00113 85 Neighborhood of HPN www.broad.mit.e...
Broad MORF_TNFRSF25 View Gene Set 0.000242 242 0.001202 86 Neighborhood of TNFRSF25 www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 0.0002685 38 0.001318 87 Neighborhood of RFC3 www.broad.mit.e...
Broad GCM_VAV1 View Gene Set 0.0002768 46 0.001343 88 Neighborhood of VAV1 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 0.0002964 175 0.001422 89 Neighborhood of DAP3 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 0.0003018 47 0.001428 90 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_LMO1 View Gene Set 0.0003043 46 0.001428 90 Neighborhood of LMO1 www.broad.mit.e...
Broad MORF_PDPK1 View Gene Set 0.0003102 67 0.00144 92 Neighborhood of PDPK1 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 0.0003388 149 0.001539 93 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_JAG1 View Gene Set 0.0003377 87 0.001539 93 Neighborhood of JAG1 www.broad.mit.e...
Broad MORF_CASP2 View Gene Set 0.0003853 89 0.001732 95 Neighborhood of CASP2 www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 0.0004219 36 0.001877 96 Neighborhood of CKS1B www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 0.0004704 36 0.002071 97 Neighborhood of MLH1 www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 0.0005158 57 0.002247 98 Neighborhood of TERF1 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 0.0005261 30 0.002247 98 Neighborhood of SMC2L1 www.broad.mit.e...
Broad GNF2_LCAT View Gene Set 0.0005223 123 0.002247 98 Neighborhood of LCAT www.broad.mit.e...
Broad GNF2_FBL View Gene Set 0.0005695 119 0.002408 101 Neighborhood of FBL www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 0.0005858 54 0.002452 102 Neighborhood of RBBP6 www.broad.mit.e...
Broad MORF_RBM8A View Gene Set 0.000629 75 0.002608 103 Neighborhood of RBM8A www.broad.mit.e...
Broad GCM_DPF2 View Gene Set 0.0007913 32 0.003234 104 Neighborhood of DPF2 www.broad.mit.e...
Broad GCM_LTK View Gene Set 0.0007953 43 0.003234 104 Neighborhood of LTK www.broad.mit.e...
Broad GCM_BECN1 View Gene Set 0.0008403 59 0.003353 106 Neighborhood of BECN1 www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 0.0008388 32 0.003353 106 Neighborhood of ELAC2 www.broad.mit.e...
Broad MORF_DEK View Gene Set 0.0009558 229 0.003779 108 Neighborhood of DEK www.broad.mit.e...
Broad GCM_BNIP1 View Gene Set 0.001009 71 0.003952 109 Neighborhood of BNIP1 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.001045 99 0.004057 110 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_BNIP1 View Gene Set 0.001114 179 0.004286 111 Neighborhood of BNIP1 www.broad.mit.e...
Broad GCM_SMARCD1 View Gene Set 0.00118 101 0.004499 112 Neighborhood of SMARCD1 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 0.001245 55 0.004706 113 Neighborhood of RPA1 www.broad.mit.e...
Broad GCM_MAX View Gene Set 0.001349 28 0.005007 114 Neighborhood of MAX www.broad.mit.e...
Broad GCM_SUPT4H1 View Gene Set 0.001341 58 0.005007 114 Neighborhood of SUPT4H1 www.broad.mit.e...
Broad MORF_PTPN9 View Gene Set 0.00149 54 0.005486 116 Neighborhood of PTPN9 www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 0.001531 90 0.005585 117 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_CEBPA View Gene Set 0.001544 64 0.005585 117 Neighborhood of CEBPA www.broad.mit.e...
Broad MORF_HEAB View Gene Set 0.001652 71 0.005928 119 Neighborhood of HEAB www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 0.001836 79 0.006533 120 Neighborhood of UBE2N www.broad.mit.e...
Broad GCM_PRKAG1 View Gene Set 0.001876 49 0.006619 121 Neighborhood of PRKAG1 www.broad.mit.e...
Broad MORF_IL13 View Gene Set 0.001949 216 0.006714 122 Neighborhood of IL13 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 0.00195 45 0.006714 122 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 0.001935 61 0.006714 122 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 0.00197 256 0.006728 125 Neighborhood of CSNK2B www.broad.mit.e...
Broad GCM_FCGR2B View Gene Set 0.002081 37 0.007053 126 Neighborhood of FCGR2B www.broad.mit.e...
Broad GNF2_TST View Gene Set 0.002193 103 0.007374 127 Neighborhood of TST www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 0.002356 157 0.007859 128 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 0.002391 145 0.007913 129 Neighborhood of G22P1 www.broad.mit.e...
Broad GCM_PRKCG View Gene Set 0.002725 60 0.008951 130 Neighborhood of PRKCG www.broad.mit.e...
Broad GCM_MYCL1 View Gene Set 0.002883 24 0.009397 131 Neighborhood of MYCL1 www.broad.mit.e...
Broad MORF_MYC View Gene Set 0.003024 71 0.009709 132 Neighborhood of MYC www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 0.003002 208 0.009709 132 Neighborhood of UBE2I www.broad.mit.e...
Broad GCM_ATM View Gene Set 0.003342 24 0.01065 134 Neighborhood of ATM www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 0.003843 222 0.01216 135 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_ESR1 View Gene Set 0.004579 159 0.01438 136 Neighborhood of ESR1 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 0.004782 155 0.0149 137 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 0.004943 119 0.0153 138 Neighborhood of AP3D1 www.broad.mit.e...
Broad GCM_PTPRU View Gene Set 0.005117 55 0.01572 139 Neighborhood of PTPRU www.broad.mit.e...
Broad MORF_STK17A View Gene Set 0.005286 155 0.01581 140 Neighborhood of STK17A www.broad.mit.e...
Broad MORF_CDC2L5 View Gene Set 0.005295 127 0.01581 140 Neighborhood of CDC2L5 www.broad.mit.e...
Broad GCM_TEC View Gene Set 0.005239 33 0.01581 140 Neighborhood of TEC www.broad.mit.e...
Broad GNF2_PRDX2 View Gene Set 0.005252 29 0.01581 140 Neighborhood of PRDX2 www.broad.mit.e...
Broad MORF_PAX7 View Gene Set 0.005354 251 0.01588 144 Neighborhood of PAX7 www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 0.006005 52 0.01768 145 Neighborhood of DDX5 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 0.006174 47 0.01806 146 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_UNG View Gene Set 0.007003 65 0.02034 147 Neighborhood of UNG www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 0.00794 26 0.02291 148 Neighborhood of CBFB www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 0.0084 174 0.02407 149 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 0.008508 120 0.02422 150 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_SS18 View Gene Set 0.009056 55 0.02561 151 Neighborhood of SS18 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 0.009573 95 0.02689 152 Neighborhood of MTA1 www.broad.mit.e...
Broad MORF_ARAF1 View Gene Set 0.01024 70 0.02859 153 Neighborhood of ARAF1 www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 0.01156 41 0.03205 154 Neighborhood of GSPT1 www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 0.01247 32 0.03434 155 Neighborhood of ANP32B www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 0.01303 28 0.03568 156 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.01357 33 0.0369 157 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 0.01382 59 0.03727 158 Neighborhood of CBFB www.broad.mit.e...
Broad GNF2_KISS1 View Gene Set 0.01388 48 0.03727 158 Neighborhood of KISS1 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 0.01481 76 0.03952 160 Neighborhood of CCNI www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 0.01495 30 0.03964 161 Neighborhood of MSH6 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 0.01507 247 0.03972 162 Neighborhood of SOD1 www.broad.mit.e...
Broad MORF_NF1 View Gene Set 0.01528 158 0.03978 163 Neighborhood of NF1 www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 0.0152 98 0.03978 163 Neighborhood of RFC1 www.broad.mit.e...
Broad MORF_MYST2 View Gene Set 0.01589 60 0.04112 165 Neighborhood of MYST2 www.broad.mit.e...
Broad GCM_CHUK View Gene Set 0.01709 61 0.04385 166 Neighborhood of CHUK www.broad.mit.e...
Broad CAR_TNFRSF25 View Gene Set 0.01715 30 0.04385 166 Neighborhood of TNFRSF25 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.01738 30 0.04392 168 Neighborhood of RAD21 www.broad.mit.e...
Broad GCM_NF2 View Gene Set 0.01732 235 0.04392 168 Neighborhood of NF2 www.broad.mit.e...
Broad MORF_USP5 View Gene Set 0.01784 46 0.0448 170 Neighborhood of USP5 www.broad.mit.e...
Broad GCM_CDH5 View Gene Set 0.01854 35 0.04629 171 Neighborhood of CDH5 www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.01986 138 0.04931 172 Neighborhood of MYST2 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_13 View Gene Set 8.941e-09 498 4.059e-06 1 Genes in module_13 www.broad.mit.e...
Broad module_41 View Gene Set 4.793e-08 542 8.173e-06 2 Genes in module_41 www.broad.mit.e...
Broad module_183 View Gene Set 5.4e-08 52 8.173e-06 2 Genes in module_183 www.broad.mit.e...
Broad module_16 View Gene Set 2.833e-06 495 0.0002593 4 Genes in module_16 www.broad.mit.e...
Broad module_111 View Gene Set 2.856e-06 151 0.0002593 4 Genes in module_111 www.broad.mit.e...
Broad module_104 View Gene Set 7.769e-06 337 0.0005879 6 Genes in module_104 www.broad.mit.e...
Broad module_181 View Gene Set 1.672e-05 292 0.001084 7 Genes in module_181 www.broad.mit.e...
Broad module_53 View Gene Set 7.646e-05 389 0.004339 8 Genes in module_53 www.broad.mit.e...
Broad module_18 View Gene Set 0.0001217 434 0.006141 9 Genes in module_18 www.broad.mit.e...
Broad module_242 View Gene Set 0.0001749 204 0.007943 10 Genes in module_242 www.broad.mit.e...
Broad module_157 View Gene Set 0.0002486 105 0.01026 11 Genes in module_157 www.broad.mit.e...
Broad module_20 View Gene Set 0.0003196 81 0.01209 12 Genes in module_20 www.broad.mit.e...
Broad module_352 View Gene Set 0.0004182 17 0.0146 13 Genes in module_352 www.broad.mit.e...
Broad module_54 View Gene Set 0.000561 242 0.01819 14 Genes in module_54 www.broad.mit.e...
Broad module_379 View Gene Set 0.0007918 194 0.02397 15 Genes in module_379 www.broad.mit.e...
Broad module_252 View Gene Set 0.001277 224 0.03625 16 Genes in module_252 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_METABOLIC_PROCESS View Gene Set 1.616e-07 801 0.0001333 1 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 1.731e-06 1197 0.0007141 2 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 1.291e-05 147 0.003552 3 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 3.36e-05 660 0.005544 4 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 2.884e-05 73 0.005544 4 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad MITOSIS View Gene Set 7.797e-05 81 0.009581 6 Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother. www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 8.129e-05 83 0.009581 6 Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 0.0001182 738 0.01219 8 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 0.0001989 148 0.01823 9 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 0.0004057 555 0.03347 10 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad MRNA_SPLICE_SITE_SELECTION View Gene Set 0.00045 6 0.03375 11 Genes annotated by the GO term GO:0006376. Selection of a splice site by components of the assembling spliceosome. www.broad.mit.e...
Broad M_PHASE View Gene Set 0.0005694 111 0.03915 12 Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0006474 601 0.04109 13 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0007592 117 0.04474 14 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 2.444e-06 1353 0.0005694 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 3.19e-05 543 0.003717 2 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 6.484e-05 129 0.005036 3 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad TRANSCRIPTION_ACTIVATOR_ACTIVITY View Gene Set 1.113e-05 169 0.004408 1 Genes annotated by the GO term GO:0016563. Any transcription regulator activity required for initiation or upregulation of transcription. www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM View Gene Set 4.923e-05 14 0.009748 2 Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING View Gene Set 0.0001633 300 0.01617 3 Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription. www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY View Gene Set 0.0001312 222 0.01617 3 Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself. www.broad.mit.e...
Broad NEUROTRANSMITTER_RECEPTOR_ACTIVITY View Gene Set 0.0004868 50 0.02754 5 Genes annotated by the GO term GO:0030594. Combining with a neurotransmitter to initiate a change in cell activity. www.broad.mit.e...
Broad TRANSCRIPTION_COACTIVATOR_ACTIVITY View Gene Set 0.0004645 121 0.02754 5 Genes annotated by the GO term GO:0003713. The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself. www.broad.mit.e...
Broad CHROMATIN_BINDING View Gene Set 0.0004095 32 0.02754 5 Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase. www.broad.mit.e...
Broad SUBSTRATE_SPECIFIC_CHANNEL_ACTIVITY View Gene Set 0.0008176 154 0.04047 8 Genes annotated by the GO term GO:0022838. Catalysis of energy-independent facilitated diffusion mediated by passage of a specific solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. www.broad.mit.e...
Broad CATION_CHANNEL_ACTIVITY View Gene Set 0.001384 118 0.04215 9 Genes annotated by the GO term GO:0005261. Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient. www.broad.mit.e...
Broad GATED_CHANNEL_ACTIVITY View Gene Set 0.001196 121 0.04215 9 Genes annotated by the GO term GO:0022836. Catalysis of the transmembrane transfer of a solute by a channel that opens in response to a specific stimulus. www.broad.mit.e...
Broad NEUROTRANSMITTER_BINDING View Gene Set 0.001056 53 0.04215 9 Genes annotated by the GO term GO:0042165. Interacting selectively with a neurotransmitter any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell. www.broad.mit.e...
Broad RHODOPSIN_LIKE_RECEPTOR_ACTIVITY View Gene Set 0.001305 131 0.04215 9 Genes annotated by the GO term GO:0001584. A G-protein coupled receptor that is structurally/functionally related to the rhodopsin receptor. www.broad.mit.e...
Broad G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY View Gene Set 0.00119 185 0.04215 9 Genes annotated by the GO term GO:0004930. A receptor that binds an extracellular ligand and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers. www.broad.mit.e...
Broad PEPTIDE_BINDING View Gene Set 0.001548 82 0.0432 14 Genes annotated by the GO term GO:0042277. Interacting selectively with peptides any of a group of organic compounds comprising two or more amino acids linked by peptide bonds. www.broad.mit.e...
Broad RNA_BINDING View Gene Set 0.001745 236 0.0432 14 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad ION_CHANNEL_ACTIVITY View Gene Set 0.00167 147 0.0432 14 Genes annotated by the GO term GO:0005216. Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 0.002026 587 0.0472 17 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15302935 View Gene Set 5.281e-09 773 1.324e-05 1 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 1.724e-08 106 2.162e-05 2 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 10591208 View Gene Set 4.983e-08 299 4.164e-05 3 The DNA sequence of human chromosome 22. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 1.53e-06 74 0.0009587 4 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 15461802 View Gene Set 2.022e-06 293 0.001014 5 A genome annotation-driven approach to cloning the human ORFeome. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 2.847e-06 504 0.00119 6 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 12837248 View Gene Set 5.154e-06 22 0.001846 7 The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome. www.ncbi.nlm.ni...
PMID 15635413 View Gene Set 8.494e-06 421 0.002662 8 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 9.673e-06 51 0.002694 9 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 1.21e-05 24 0.003033 10 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 15057824 View Gene Set 1.823e-05 274 0.004156 11 The DNA sequence and biology of human chromosome 19. www.ncbi.nlm.ni...
PMID 11500380 View Gene Set 3.036e-05 10 0.006343 12 A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site. www.ncbi.nlm.ni...
PMID 19047128 View Gene Set 3.575e-05 19 0.006894 13 Single nucleotide polymorphisms of microRNA machinery genes modify the risk of renal cell carcinoma. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 4.789e-05 34 0.008576 14 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 5.261e-05 391 0.008793 15 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 7.741e-05 208 0.01213 16 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 11076961 View Gene Set 0.0001048 14 0.01546 17 Characterization of vertebrate cohesin complexes and their regulation in prophase. www.ncbi.nlm.ni...
PMID 18240029 View Gene Set 0.0001295 203 0.01803 18 Reviews in molecular biology and biotechnology: transmembrane signaling by G protein-coupled receptors. www.ncbi.nlm.ni...
PMID 8590280 View Gene Set 0.0001737 41 0.02292 19 Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 9153318 View Gene Set 0.0002097 11 0.02629 20 CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues. www.ncbi.nlm.ni...
PMID 15504738 View Gene Set 0.0002613 19 0.03073 21 Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 0.0002724 22 0.03073 21 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 0.0002819 48 0.03073 21 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 11018012 View Gene Set 0.0004277 11 0.04289 24 Functional selectivity of recombinant mammalian SWI/SNF subunits. www.ncbi.nlm.ni...
PMID 18997788 View Gene Set 0.0004158 10 0.04289 24 The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction. www.ncbi.nlm.ni...
PMID 18485873 View Gene Set 0.0004571 13 0.04407 26 Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 11780052 View Gene Set 0.0004799 517 0.04456 27 The DNA sequence and comparative analysis of human chromosome 20. www.ncbi.nlm.ni...
PMID 12748276 View Gene Set 0.0005358 12 0.04797 28 Identification of E-box factor TFE3 as a functional partner for the E2F3 transcription factor. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 0.0005665 182 0.04898 29 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 2.272e-12 229 1.67e-09 1 RRM expasy.org/pros...
Null PS50014 View Gene Set 8.534e-05 41 0.03136 2 BROMODOMAIN_2 expasy.org/pros...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.WBP4 View Gene Set 3.334e-08 35 7.658e-05 1 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.155871 View Gene Set 1.169e-07 236 0.0001343 2 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 9.333e-06 53 0.007146 3 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 7.933e-05 42 0.04555 4 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SFRS12 View Gene Set 7.012e-06 49 0.01665 1 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.WBP4 View Gene Set 3.334e-08 35 8.993e-05 1 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.155871 View Gene Set 5.004e-08 251 8.993e-05 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 5.549e-06 50 0.004985 3 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 4.778e-06 96 0.004985 3 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.TAF11 View Gene Set 1.521e-05 19 0.01093 5 Protein-protein-interaction for TAF11 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 7.933e-05 42 0.04752 6 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Phosphorylation of the APC/C View Gene Set 0.0001062 26 0.04695 1 REACTOME - Phosphorylation of the APC/C gene set www.pathwaycomm...
Null GPCR ligand binding View Gene Set 0.000104 339 0.04695 1 REACTOME - GPCR ligand binding gene set www.pathwaycomm...
Null Signaling by GPCR View Gene Set 0.0001261 802 0.04695 1 REACTOME - Signaling by GPCR gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-654-5p View Gene Set 6.429e-07 1123 0.0004352 1 microRNA targets for hsa-miR-654-5p from miranda.targets www.mirbase.org...
Null hsa-miR-744 View Gene Set 1.513e-06 797 0.0005123 2 microRNA targets for hsa-miR-744 from miranda.targets www.mirbase.org...
Null hsa-miR-615-5p View Gene Set 5.54e-06 1189 0.00125 3 microRNA targets for hsa-miR-615-5p from miranda.targets www.mirbase.org...
Null hsa-miR-663 View Gene Set 9.413e-06 993 0.001593 4 microRNA targets for hsa-miR-663 from miranda.targets www.mirbase.org...
Null hsa-miR-1207-5p View Gene Set 1.435e-05 2608 0.001943 5 microRNA targets for hsa-miR-1207-5p from miranda.targets www.mirbase.org...
Null hsa-miR-661 View Gene Set 1.928e-05 2076 0.002176 6 microRNA targets for hsa-miR-661 from miranda.targets www.mirbase.org...
Null hsa-miR-1225-3p View Gene Set 3.443e-05 950 0.00333 7 microRNA targets for hsa-miR-1225-3p from miranda.targets www.mirbase.org...
Null hsa-miR-940 View Gene Set 0.0001314 1873 0.01112 8 microRNA targets for hsa-miR-940 from miranda.targets www.mirbase.org...
Null hsa-miR-939 View Gene Set 0.0001488 2203 0.01119 9 microRNA targets for hsa-miR-939 from miranda.targets www.mirbase.org...
Null hsa-miR-1234 View Gene Set 0.000214 510 0.01449 10 microRNA targets for hsa-miR-1234 from miranda.targets www.mirbase.org...
Null hsa-miR-1281 View Gene Set 0.0002606 505 0.01488 11 microRNA targets for hsa-miR-1281 from miranda.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 0.0002637 1921 0.01488 11 microRNA targets for hsa-miR-486-3p from miranda.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 0.0004633 2291 0.02413 13 microRNA targets for hsa-miR-637 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-296-3p View Gene Set 1.098e-09 905 7.81e-07 1 microRNA targets for hsa-miR-296-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-615-5p View Gene Set 5.934e-09 848 2.11e-06 2 microRNA targets for hsa-miR-615-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-769-3p View Gene Set 1.145e-08 823 2.713e-06 3 microRNA targets for hsa-miR-769-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-541 View Gene Set 1.971e-08 711 3.503e-06 4 microRNA targets for hsa-miR-541 from mirbase.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 4.92e-08 788 3.886e-06 5 microRNA targets for hsa-miR-324-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-331-3p View Gene Set 4.585e-08 712 3.886e-06 5 microRNA targets for hsa-miR-331-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-611 View Gene Set 3.822e-08 671 3.886e-06 5 microRNA targets for hsa-miR-611 from mirbase.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 3.851e-08 672 3.886e-06 5 microRNA targets for hsa-miR-637 from mirbase.targets www.mirbase.org...
Null hsa-miR-760 View Gene Set 4.692e-08 690 3.886e-06 5 microRNA targets for hsa-miR-760 from mirbase.targets www.mirbase.org...
Null hsa-miR-502-5p View Gene Set 2.142e-07 730 1.523e-05 10 microRNA targets for hsa-miR-502-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-296-5p View Gene Set 6.527e-07 755 4.219e-05 11 microRNA targets for hsa-miR-296-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-886-3p View Gene Set 1.328e-06 745 7.866e-05 12 microRNA targets for hsa-miR-886-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-23a* View Gene Set 1.906e-06 604 9.679e-05 13 microRNA targets for hsa-miR-23a* from mirbase.targets www.mirbase.org...
Null hsa-miR-654-5p View Gene Set 1.893e-06 718 9.679e-05 13 microRNA targets for hsa-miR-654-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-671-3p View Gene Set 2.177e-06 767 0.0001032 15 microRNA targets for hsa-miR-671-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-193a-5p View Gene Set 2.662e-06 767 0.0001183 16 microRNA targets for hsa-miR-193a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-339-5p View Gene Set 2.919e-06 659 0.0001221 17 microRNA targets for hsa-miR-339-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-125a-3p View Gene Set 3.991e-06 829 0.0001576 18 microRNA targets for hsa-miR-125a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-939 View Gene Set 4.593e-06 667 0.0001719 19 microRNA targets for hsa-miR-939 from mirbase.targets www.mirbase.org...
Null hsa-miR-920 View Gene Set 5.073e-06 661 0.0001803 20 microRNA targets for hsa-miR-920 from mirbase.targets www.mirbase.org...
Null hsa-miR-671-5p View Gene Set 5.584e-06 813 0.000189 21 microRNA targets for hsa-miR-671-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 6.054e-06 831 0.0001956 22 microRNA targets for hsa-miR-125b from mirbase.targets www.mirbase.org...
Null hsa-miR-646 View Gene Set 7.576e-06 745 0.0002342 23 microRNA targets for hsa-miR-646 from mirbase.targets www.mirbase.org...
Null hsa-miR-328 View Gene Set 1.047e-05 685 0.0003101 24 microRNA targets for hsa-miR-328 from mirbase.targets www.mirbase.org...
Null hsa-miR-146b-3p View Gene Set 1.235e-05 695 0.0003377 25 microRNA targets for hsa-miR-146b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-634 View Gene Set 1.222e-05 714 0.0003377 25 microRNA targets for hsa-miR-634 from mirbase.targets www.mirbase.org...
Null hsa-miR-214 View Gene Set 1.536e-05 797 0.0004045 27 microRNA targets for hsa-miR-214 from mirbase.targets www.mirbase.org...
Null hsa-miR-886-5p View Gene Set 1.771e-05 793 0.0004496 28 microRNA targets for hsa-miR-886-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-218-2* View Gene Set 1.86e-05 641 0.0004559 29 microRNA targets for hsa-miR-218-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-422a View Gene Set 2.06e-05 755 0.0004726 30 microRNA targets for hsa-miR-422a from mirbase.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 2.026e-05 722 0.0004726 30 microRNA targets for hsa-miR-874 from mirbase.targets www.mirbase.org...
Null hsa-miR-550 View Gene Set 2.886e-05 669 0.0006412 32 microRNA targets for hsa-miR-550 from mirbase.targets www.mirbase.org...
Null hsa-miR-638 View Gene Set 3.242e-05 639 0.0006986 33 microRNA targets for hsa-miR-638 from mirbase.targets www.mirbase.org...
Null hsa-miR-767-3p View Gene Set 3.955e-05 784 0.0007811 34 microRNA targets for hsa-miR-767-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-769-5p View Gene Set 3.949e-05 790 0.0007811 34 microRNA targets for hsa-miR-769-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-877 View Gene Set 3.941e-05 668 0.0007811 34 microRNA targets for hsa-miR-877 from mirbase.targets www.mirbase.org...
Null hsa-miR-650 View Gene Set 4.956e-05 693 0.0009524 37 microRNA targets for hsa-miR-650 from mirbase.targets www.mirbase.org...
Null hsa-miR-663 View Gene Set 5.439e-05 743 0.001018 38 microRNA targets for hsa-miR-663 from mirbase.targets www.mirbase.org...
Null hsa-miR-612 View Gene Set 5.61e-05 685 0.001023 39 microRNA targets for hsa-miR-612 from mirbase.targets www.mirbase.org...
Null hsa-miR-423-5p View Gene Set 6.837e-05 767 0.001215 40 microRNA targets for hsa-miR-423-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 7.177e-05 817 0.001245 41 microRNA targets for hsa-miR-125a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-505* View Gene Set 7.665e-05 516 0.001298 42 microRNA targets for hsa-miR-505* from mirbase.targets www.mirbase.org...
Null hsa-miR-92a-2* View Gene Set 8.198e-05 654 0.001356 43 microRNA targets for hsa-miR-92a-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-324-5p View Gene Set 9.342e-05 801 0.001488 44 microRNA targets for hsa-miR-324-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-423-3p View Gene Set 9.419e-05 741 0.001488 44 microRNA targets for hsa-miR-423-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-675 View Gene Set 9.9e-05 686 0.00153 46 microRNA targets for hsa-miR-675 from mirbase.targets www.mirbase.org...
Null hsa-miR-565 View Gene Set 0.0001017 689 0.001538 47 microRNA targets for hsa-miR-565 from mirbase.targets www.mirbase.org...
Null hsa-miR-18a* View Gene Set 0.0001137 491 0.00165 48 microRNA targets for hsa-miR-18a* from mirbase.targets www.mirbase.org...
Null hsa-miR-31 View Gene Set 0.0001119 683 0.00165 48 microRNA targets for hsa-miR-31 from mirbase.targets www.mirbase.org...
Null hsa-miR-941 View Gene Set 0.0001293 590 0.001838 50 microRNA targets for hsa-miR-941 from mirbase.targets www.mirbase.org...
Null hsa-miR-28-5p View Gene Set 0.0001678 780 0.002339 51 microRNA targets for hsa-miR-28-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-30b* View Gene Set 0.0001753 655 0.002352 52 microRNA targets for hsa-miR-30b* from mirbase.targets www.mirbase.org...
Null hsa-miR-708 View Gene Set 0.0001722 685 0.002352 52 microRNA targets for hsa-miR-708 from mirbase.targets www.mirbase.org...
Null hsa-miR-593 View Gene Set 0.0001938 556 0.002552 54 microRNA targets for hsa-miR-593 from mirbase.targets www.mirbase.org...
Null hsa-miR-25* View Gene Set 0.0001991 418 0.002573 55 microRNA targets for hsa-miR-25* from mirbase.targets www.mirbase.org...
Null hsa-miR-185* View Gene Set 0.0002036 506 0.002584 56 microRNA targets for hsa-miR-185* from mirbase.targets www.mirbase.org...
Null hsa-miR-604 View Gene Set 0.0002095 691 0.002613 57 microRNA targets for hsa-miR-604 from mirbase.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 0.0002155 728 0.002641 58 microRNA targets for hsa-miR-330-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-596 View Gene Set 0.000231 644 0.002784 59 microRNA targets for hsa-miR-596 from mirbase.targets www.mirbase.org...
Null hsa-miR-619 View Gene Set 0.0002646 674 0.003135 60 microRNA targets for hsa-miR-619 from mirbase.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.0002952 602 0.003382 61 microRNA targets for hsa-miR-149 from mirbase.targets www.mirbase.org...
Null hsa-miR-339-3p View Gene Set 0.0003092 797 0.003382 61 microRNA targets for hsa-miR-339-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-564 View Gene Set 0.0003079 706 0.003382 61 microRNA targets for hsa-miR-564 from mirbase.targets www.mirbase.org...
Null hsa-miR-602 View Gene Set 0.0003016 710 0.003382 61 microRNA targets for hsa-miR-602 from mirbase.targets www.mirbase.org...
Null hsa-miR-631 View Gene Set 0.0002967 714 0.003382 61 microRNA targets for hsa-miR-631 from mirbase.targets www.mirbase.org...
Null hsa-miR-188-3p View Gene Set 0.0003256 637 0.003488 66 microRNA targets for hsa-miR-188-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-483-3p View Gene Set 0.0003287 702 0.003488 66 microRNA targets for hsa-miR-483-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-516b View Gene Set 0.0003612 845 0.003777 68 microRNA targets for hsa-miR-516b from mirbase.targets www.mirbase.org...
Null hsa-miR-658 View Gene Set 0.000385 660 0.003967 69 microRNA targets for hsa-miR-658 from mirbase.targets www.mirbase.org...
Null hsa-miR-30c-1* View Gene Set 0.0004177 741 0.004212 70 microRNA targets for hsa-miR-30c-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-940 View Gene Set 0.0004206 660 0.004212 70 microRNA targets for hsa-miR-940 from mirbase.targets www.mirbase.org...
Null hsa-miR-345 View Gene Set 0.0004563 696 0.004506 72 microRNA targets for hsa-miR-345 from mirbase.targets www.mirbase.org...
Null hsa-miR-554 View Gene Set 0.0004773 708 0.004649 73 microRNA targets for hsa-miR-554 from mirbase.targets www.mirbase.org...
Null hsa-miR-15a* View Gene Set 0.0005232 554 0.004951 74 microRNA targets for hsa-miR-15a* from mirbase.targets www.mirbase.org...
Null hsa-miR-220c View Gene Set 0.0005293 831 0.004951 74 microRNA targets for hsa-miR-220c from mirbase.targets www.mirbase.org...
Null hsa-miR-455-5p View Gene Set 0.0005203 739 0.004951 74 microRNA targets for hsa-miR-455-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-615-3p View Gene Set 0.0005559 757 0.005133 77 microRNA targets for hsa-miR-615-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 0.0005753 773 0.005244 78 microRNA targets for hsa-miR-486-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-508-5p View Gene Set 0.000589 572 0.005301 79 microRNA targets for hsa-miR-508-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-484 View Gene Set 0.0006362 733 0.005654 80 microRNA targets for hsa-miR-484 from mirbase.targets www.mirbase.org...
Null hsa-miR-674 View Gene Set 0.0007189 788 0.00631 81 microRNA targets for hsa-miR-674 from mirbase.targets www.mirbase.org...
Null hsa-miR-106b* View Gene Set 0.0007364 562 0.006385 82 microRNA targets for hsa-miR-106b* from mirbase.targets www.mirbase.org...
Null hsa-miR-221* View Gene Set 0.0007778 525 0.006663 83 microRNA targets for hsa-miR-221* from mirbase.targets www.mirbase.org...
Null hsa-miR-125b-1* View Gene Set 0.0007995 622 0.006767 84 microRNA targets for hsa-miR-125b-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-105* View Gene Set 0.000876 540 0.007327 85 microRNA targets for hsa-miR-105* from mirbase.targets www.mirbase.org...
Null hsa-miR-486-5p View Gene Set 0.0008914 729 0.007369 86 microRNA targets for hsa-miR-486-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-662 View Gene Set 0.0009331 663 0.007626 87 microRNA targets for hsa-miR-662 from mirbase.targets www.mirbase.org...
Null hsa-miR-668 View Gene Set 0.0009833 560 0.007944 88 microRNA targets for hsa-miR-668 from mirbase.targets www.mirbase.org...
Null hsa-miR-770-5p View Gene Set 0.0009944 702 0.007944 88 microRNA targets for hsa-miR-770-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7c View Gene Set 0.001016 760 0.008027 90 microRNA targets for hsa-let-7c from mirbase.targets www.mirbase.org...
Null hsa-miR-151-5p View Gene Set 0.001069 749 0.008351 91 microRNA targets for hsa-miR-151-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-140-3p View Gene Set 0.001093 771 0.008446 92 microRNA targets for hsa-miR-140-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-657 View Gene Set 0.001117 718 0.008542 93 microRNA targets for hsa-miR-657 from mirbase.targets www.mirbase.org...
Null hsa-miR-30c-2* View Gene Set 0.00123 758 0.009303 94 microRNA targets for hsa-miR-30c-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-194* View Gene Set 0.001365 502 0.01014 95 microRNA targets for hsa-miR-194* from mirbase.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 0.001369 729 0.01014 95 microRNA targets for hsa-miR-608 from mirbase.targets www.mirbase.org...
Null hsa-miR-892b View Gene Set 0.001412 726 0.01035 97 microRNA targets for hsa-miR-892b from mirbase.targets www.mirbase.org...
Null hsa-miR-92b* View Gene Set 0.001445 648 0.01049 98 microRNA targets for hsa-miR-92b* from mirbase.targets www.mirbase.org...
Null hsa-miR-342-5p View Gene Set 0.001588 698 0.01129 99 microRNA targets for hsa-miR-342-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-766 View Gene Set 0.001584 517 0.01129 99 microRNA targets for hsa-miR-766 from mirbase.targets www.mirbase.org...
Null hsa-miR-323-5p View Gene Set 0.001606 763 0.0113 101 microRNA targets for hsa-miR-323-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-504 View Gene Set 0.001679 621 0.0117 102 microRNA targets for hsa-miR-504 from mirbase.targets www.mirbase.org...
Null hsa-miR-135a* View Gene Set 0.001742 615 0.01191 103 microRNA targets for hsa-miR-135a* from mirbase.targets www.mirbase.org...
Null hsa-miR-492 View Gene Set 0.001734 625 0.01191 103 microRNA targets for hsa-miR-492 from mirbase.targets www.mirbase.org...
Null hsa-miR-937 View Gene Set 0.001823 654 0.01235 105 microRNA targets for hsa-miR-937 from mirbase.targets www.mirbase.org...
Null hsa-miR-765 View Gene Set 0.001917 674 0.01286 106 microRNA targets for hsa-miR-765 from mirbase.targets www.mirbase.org...
Null hsa-miR-184 View Gene Set 0.002022 713 0.01331 107 microRNA targets for hsa-miR-184 from mirbase.targets www.mirbase.org...
Null hsa-miR-329 View Gene Set 0.002015 652 0.01331 107 microRNA targets for hsa-miR-329 from mirbase.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.002254 710 0.01457 109 microRNA targets for hsa-miR-370 from mirbase.targets www.mirbase.org...
Null hsa-miR-744 View Gene Set 0.002237 715 0.01457 109 microRNA targets for hsa-miR-744 from mirbase.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.002317 739 0.01476 111 microRNA targets for hsa-miR-24 from mirbase.targets www.mirbase.org...
Null hsa-miR-661 View Gene Set 0.002324 575 0.01476 111 microRNA targets for hsa-miR-661 from mirbase.targets www.mirbase.org...
Null hsa-miR-571 View Gene Set 0.002395 720 0.01507 113 microRNA targets for hsa-miR-571 from mirbase.targets www.mirbase.org...
Null hsa-miR-450b-3p View Gene Set 0.002459 738 0.01534 114 microRNA targets for hsa-miR-450b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-885-3p View Gene Set 0.002708 799 0.01674 115 microRNA targets for hsa-miR-885-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-593* View Gene Set 0.002741 504 0.0168 116 microRNA targets for hsa-miR-593* from mirbase.targets www.mirbase.org...
Null hsa-miR-516a-5p View Gene Set 0.002894 788 0.01759 117 microRNA targets for hsa-miR-516a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-202 View Gene Set 0.003041 754 0.01817 118 microRNA targets for hsa-miR-202 from mirbase.targets www.mirbase.org...
Null hsa-miR-378 View Gene Set 0.003031 720 0.01817 118 microRNA targets for hsa-miR-378 from mirbase.targets www.mirbase.org...
Null hsa-miR-197 View Gene Set 0.003212 609 0.01887 120 microRNA targets for hsa-miR-197 from mirbase.targets www.mirbase.org...
Null hsa-miR-326 View Gene Set 0.0032 650 0.01887 120 microRNA targets for hsa-miR-326 from mirbase.targets www.mirbase.org...
Null hsa-miR-483-5p View Gene Set 0.003267 717 0.01904 122 microRNA targets for hsa-miR-483-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-99b* View Gene Set 0.003513 571 0.02031 123 microRNA targets for hsa-miR-99b* from mirbase.targets www.mirbase.org...
Null hsa-let-7b View Gene Set 0.00365 775 0.02093 124 microRNA targets for hsa-let-7b from mirbase.targets www.mirbase.org...
Null hsa-miR-181a-2* View Gene Set 0.003746 742 0.02131 125 microRNA targets for hsa-miR-181a-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-503 View Gene Set 0.00381 748 0.0215 126 microRNA targets for hsa-miR-503 from mirbase.targets www.mirbase.org...
Null hsa-miR-555 View Gene Set 0.00409 690 0.0229 127 microRNA targets for hsa-miR-555 from mirbase.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.004217 770 0.02342 128 microRNA targets for hsa-miR-133b from mirbase.targets www.mirbase.org...
Null hsa-miR-551a View Gene Set 0.004423 676 0.02438 129 microRNA targets for hsa-miR-551a from mirbase.targets www.mirbase.org...
Null hsa-miR-196a* View Gene Set 0.005718 526 0.03128 130 microRNA targets for hsa-miR-196a* from mirbase.targets www.mirbase.org...
Null hsa-miR-622 View Gene Set 0.005925 635 0.03216 131 microRNA targets for hsa-miR-622 from mirbase.targets www.mirbase.org...
Null hsa-miR-452* View Gene Set 0.006096 532 0.03284 132 microRNA targets for hsa-miR-452* from mirbase.targets www.mirbase.org...
Null hsa-miR-557 View Gene Set 0.006168 748 0.03297 133 microRNA targets for hsa-miR-557 from mirbase.targets www.mirbase.org...
Null hsa-miR-532-3p View Gene Set 0.00623 657 0.03306 134 microRNA targets for hsa-miR-532-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-378* View Gene Set 0.006397 686 0.03369 135 microRNA targets for hsa-miR-378* from mirbase.targets www.mirbase.org...
Null hsa-miR-632 View Gene Set 0.006786 690 0.03548 136 microRNA targets for hsa-miR-632 from mirbase.targets www.mirbase.org...
Null hsa-miR-659 View Gene Set 0.007074 705 0.03671 137 microRNA targets for hsa-miR-659 from mirbase.targets www.mirbase.org...
Null hsa-miR-299-3p View Gene Set 0.007363 732 0.03793 138 microRNA targets for hsa-miR-299-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-99a* View Gene Set 0.007621 604 0.03898 139 microRNA targets for hsa-miR-99a* from mirbase.targets www.mirbase.org...
Null hsa-miR-432 View Gene Set 0.007789 691 0.03956 140 microRNA targets for hsa-miR-432 from mirbase.targets www.mirbase.org...
Null hsa-miR-647 View Gene Set 0.008253 724 0.04162 141 microRNA targets for hsa-miR-647 from mirbase.targets www.mirbase.org...
Null hsa-miR-23b* View Gene Set 0.008372 544 0.04192 142 microRNA targets for hsa-miR-23b* from mirbase.targets www.mirbase.org...
Null hsa-miR-648 View Gene Set 0.008512 780 0.04232 143 microRNA targets for hsa-miR-648 from mirbase.targets www.mirbase.org...
Null hsa-miR-346 View Gene Set 0.00872 568 0.04306 144 microRNA targets for hsa-miR-346 from mirbase.targets www.mirbase.org...
Null hsa-miR-891a View Gene Set 0.008944 767 0.04385 145 microRNA targets for hsa-miR-891a from mirbase.targets www.mirbase.org...
Null hsa-miR-510 View Gene Set 0.009187 639 0.04474 146 microRNA targets for hsa-miR-510 from mirbase.targets www.mirbase.org...
Null hsa-miR-200c* View Gene Set 0.00925 564 0.04474 147 microRNA targets for hsa-miR-200c* from mirbase.targets www.mirbase.org...
Null hsa-miR-518c* View Gene Set 0.009711 606 0.04665 148 microRNA targets for hsa-miR-518c* from mirbase.targets www.mirbase.org...
Null hsa-miR-99b View Gene Set 0.009817 708 0.04685 149 microRNA targets for hsa-miR-99b from mirbase.targets www.mirbase.org...
Null hsa-miR-24-2* View Gene Set 0.01025 581 0.04794 150 microRNA targets for hsa-miR-24-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-542-5p View Gene Set 0.01021 774 0.04794 150 microRNA targets for hsa-miR-542-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-626 View Gene Set 0.01016 677 0.04794 150 microRNA targets for hsa-miR-626 from mirbase.targets www.mirbase.org...
Null hsa-miR-636 View Gene Set 0.01064 600 0.04946 153 microRNA targets for hsa-miR-636 from mirbase.targets www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p View Gene Set 1.055e-11 1865 2.441e-08 1 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p View Gene Set 4.424e-11 1681 5.119e-08 2 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541 View Gene Set 2.387e-08 1832 1.841e-05 3 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 View Gene Set 4.557e-08 1582 2.636e-05 4 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 View Gene Set 8.998e-08 2846 4.164e-05 5 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-296-3p View Gene Set 1.852e-07 1042 7.144e-05 6 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 View Gene Set 2.341e-07 1378 7.737e-05 7 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 View Gene Set 3.36e-07 2729 9.72e-05 8 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 View Gene Set 4.711e-07 2504 0.0001211 9 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p View Gene Set 6.817e-07 2545 0.0001434 10 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 View Gene Set 6.552e-07 2615 0.0001434 10 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p View Gene Set 1.039e-06 1946 0.0002003 12 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-3p View Gene Set 1.125e-06 1039 0.0002003 12 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-193a-5p View Gene Set 1.359e-06 1799 0.0002247 14 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-193a-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 View Gene Set 1.496e-06 916 0.0002309 15 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 View Gene Set 2.36e-06 1017 0.0003412 16 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 2.861e-06 1941 0.0003679 17 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-324-5p View Gene Set 2.853e-06 892 0.0003679 17 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-920 View Gene Set 3.951e-06 1935 0.0004812 19 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-920 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-324-5p View Gene Set 5.277e-06 934 0.0006105 20 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 6.784e-06 1096 0.0007475 21 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p View Gene Set 8.938e-06 1519 0.0009401 22 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p View Gene Set 1.642e-05 1764 0.001652 23 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p View Gene Set 1.783e-05 1618 0.001719 24 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 View Gene Set 1.951e-05 2252 0.001806 25 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p View Gene Set 2.036e-05 1053 0.001812 26 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604 View Gene Set 2.419e-05 1079 0.001999 27 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-328 View Gene Set 2.341e-05 1892 0.001999 27 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-296-3p View Gene Set 2.707e-05 2354 0.00216 29 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-5p View Gene Set 2.9e-05 886 0.002237 30 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 View Gene Set 3.02e-05 3384 0.002254 31 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-638 View Gene Set 3.639e-05 1054 0.002631 32 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-638 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-5p View Gene Set 3.861e-05 2249 0.002707 33 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-3p View Gene Set 4.099e-05 1092 0.00279 34 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 View Gene Set 4.705e-05 1071 0.00311 35 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 View Gene Set 5.152e-05 820 0.003222 36 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 View Gene Set 5.092e-05 946 0.003222 36 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 View Gene Set 5.444e-05 1838 0.003315 38 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p View Gene Set 6.194e-05 1187 0.003675 39 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-3p View Gene Set 7.946e-05 2397 0.004597 40 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b View Gene Set 8.838e-05 1252 0.004988 41 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 View Gene Set 0.0001082 1066 0.005959 42 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p View Gene Set 0.0001241 1113 0.006676 43 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p View Gene Set 0.0001291 1112 0.006787 44 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 View Gene Set 0.0001846 1108 0.009288 45 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p View Gene Set 0.0001817 1142 0.009288 45 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612 View Gene Set 0.0002078 2970 0.009813 47 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 View Gene Set 0.0002018 1065 0.009813 47 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 View Gene Set 0.0002062 872 0.009813 47 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 View Gene Set 0.0002171 1858 0.01005 50 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-662 View Gene Set 0.000248 984 0.01104 51 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-662 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-346 View Gene Set 0.0002453 1493 0.01104 51 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-346 View Gene Set 0.0003321 1521 0.0145 53 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p View Gene Set 0.0003626 2496 0.01526 54 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-3p View Gene Set 0.0003563 1095 0.01526 54 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-149 View Gene Set 0.0003911 940 0.01616 56 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p View Gene Set 0.0004476 1485 0.01817 57 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-149 View Gene Set 0.0004954 935 0.01977 58 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p View Gene Set 0.000606 764 0.02377 59 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 View Gene Set 0.0006744 1389 0.02601 60 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p View Gene Set 0.0007913 1044 0.03002 61 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-346 View Gene Set 0.0008334 1502 0.0311 62 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b View Gene Set 0.0008564 1376 0.03146 63 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 View Gene Set 0.0009065 1484 0.03278 64 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-329 View Gene Set 0.0009663 986 0.0344 65 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-329 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650 View Gene Set 0.001117 2314 0.03712 66 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-665 View Gene Set 0.001108 2514 0.03712 66 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-665 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-184 View Gene Set 0.001107 735 0.03712 66 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-184 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-422a View Gene Set 0.001123 955 0.03712 66 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-422a from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-378 View Gene Set 0.001067 815 0.03712 66 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-378 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-658 View Gene Set 0.001155 1603 0.03764 71 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-658 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p View Gene Set 0.001183 954 0.03803 72 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-346 View Gene Set 0.001267 704 0.04016 73 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 View Gene Set 0.001357 1420 0.04244 74 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-346 View Gene Set 0.001417 746 0.04373 75 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 View Gene Set 0.001455 834 0.04431 76 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null V_YY1_02 View Gene Set 0.0001777 163 0.03785 1 List of genes containing a conserved (FDR < 0.1%) V$YY1_02 TFBS located within 3 kb around the TSS for the YY1 transcription factor www.gene-regula...
Null V_NMYC_01 View Gene Set 0.0003611 54 0.03846 2 List of genes containing a conserved (FDR < 0.1%) V$NMYC_01 TFBS located within 3 kb around the TSS for the N-Myc transcription factor www.gene-regula...