Results

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Go to: Gene Set Collection: KEGG
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AFA results for: SAHA.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04142 View Gene Set 4.657e-09 121 9.967e-07 1 Lysosome www.genome.jp/d...
KEGG 01100 View Gene Set 3.105e-07 1120 3.323e-05 2 Metabolic pathways www.genome.jp/d...
KEGG 00100 View Gene Set 1.401e-06 17 9.993e-05 3 Steroid biosynthesis www.genome.jp/d...
KEGG 05110 View Gene Set 9.537e-06 56 0.0005102 4 Vibrio cholerae infection www.genome.jp/d...
KEGG 04145 View Gene Set 1.211e-05 158 0.0005184 5 Phagosome www.genome.jp/d...
KEGG 04966 View Gene Set 3.988e-05 27 0.001422 6 Collecting duct acid secretion www.genome.jp/d...
KEGG 00330 View Gene Set 0.0001018 54 0.003111 7 Arginine and proline metabolism www.genome.jp/d...
KEGG 04070 View Gene Set 0.0002067 78 0.005528 8 Phosphatidylinositol signaling system www.genome.jp/d...
KEGG 04144 View Gene Set 0.0002791 205 0.005973 9 Endocytosis www.genome.jp/d...
KEGG 04670 View Gene Set 0.00027 118 0.005973 9 Leukocyte transendothelial migration www.genome.jp/d...
KEGG 05120 View Gene Set 0.0003887 68 0.007562 11 Epithelial cell signaling in Helicobacter pylori infection www.genome.jp/d...
KEGG 04360 View Gene Set 0.0004577 129 0.008163 12 Axon guidance www.genome.jp/d...
KEGG 01040 View Gene Set 0.0006817 21 0.01122 13 Biosynthesis of unsaturated fatty acids www.genome.jp/d...
KEGG 04146 View Gene Set 0.0008218 78 0.01256 14 Peroxisome www.genome.jp/d...
KEGG 00280 View Gene Set 0.001335 44 0.01634 15 Valine leucine and isoleucine degradation www.genome.jp/d...
KEGG 00471 View Gene Set 0.001375 4 0.01634 15 D-Glutamine and D-glutamate metabolism www.genome.jp/d...
KEGG 04010 View Gene Set 0.001317 267 0.01634 15 MAPK signaling pathway www.genome.jp/d...
KEGG 04664 View Gene Set 0.00116 79 0.01634 15 Fc epsilon RI signaling pathway www.genome.jp/d...
KEGG 00910 View Gene Set 0.001906 23 0.02146 19 Nitrogen metabolism www.genome.jp/d...
KEGG 04912 View Gene Set 0.002045 101 0.02189 20 GnRH signaling pathway www.genome.jp/d...
KEGG 00260 View Gene Set 0.002351 31 0.02283 21 Glycine serine and threonine metabolism www.genome.jp/d...
KEGG 00480 View Gene Set 0.002563 50 0.02283 21 Glutathione metabolism www.genome.jp/d...
KEGG 00600 View Gene Set 0.002575 40 0.02283 21 Sphingolipid metabolism www.genome.jp/d...
KEGG 04060 View Gene Set 0.002774 266 0.02283 21 Cytokine-cytokine receptor interaction www.genome.jp/d...
KEGG 04514 View Gene Set 0.002708 135 0.02283 21 Cell adhesion molecules (CAMs) www.genome.jp/d...
KEGG 04650 View Gene Set 0.002302 137 0.02283 21 Natural killer cell mediated cytotoxicity www.genome.jp/d...
KEGG 04971 View Gene Set 0.003735 74 0.0296 27 Gastric acid secretion www.genome.jp/d...
KEGG 00562 View Gene Set 0.004385 57 0.03351 28 Inositol phosphate metabolism www.genome.jp/d...
KEGG 00534 View Gene Set 0.004821 26 0.03558 29 Glycosaminoglycan biosynthesis - heparan sulfate www.genome.jp/d...
KEGG 00520 View Gene Set 0.005508 45 0.03803 30 Amino sugar and nucleotide sugar metabolism www.genome.jp/d...
KEGG 04062 View Gene Set 0.005431 189 0.03803 30 Chemokine signaling pathway www.genome.jp/d...
KEGG 00250 View Gene Set 0.005816 32 0.0389 32 Alanine aspartate and glutamate metabolism www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0016020 View Gene Set 2.778e-37 7286 3.711e-33 1 membrane amigo.geneontol...
GO GO:0044425 View Gene Set 1.347e-28 6145 9e-25 2 membrane part amigo.geneontol...
GO GO:0005886 View Gene Set 1.967e-27 3759 8.761e-24 3 plasma membrane amigo.geneontol...
GO GO:0031224 View Gene Set 2.575e-23 5387 8.6e-20 4 intrinsic to membrane amigo.geneontol...
GO GO:0016021 View Gene Set 5.948e-23 5278 1.589e-19 5 integral to membrane amigo.geneontol...
GO GO:0044459 View Gene Set 3.109e-15 2023 6.922e-12 6 plasma membrane part amigo.geneontol...
GO GO:0044281 View Gene Set 1.491e-14 1698 2.846e-11 7 small molecule metabolic process amigo.geneontol...
GO GO:0042221 View Gene Set 1.074e-13 1516 1.794e-10 8 response to chemical stimulus amigo.geneontol...
GO GO:0044444 View Gene Set 1.604e-13 5184 2.381e-10 9 cytoplasmic part amigo.geneontol...
GO GO:0050896 View Gene Set 1.751e-11 3765 2.34e-08 10 response to stimulus amigo.geneontol...
GO GO:0031226 View Gene Set 2.588e-11 1208 3.144e-08 11 intrinsic to plasma membrane amigo.geneontol...
GO GO:0051179 View Gene Set 3.903e-11 3376 4.011e-08 12 localization amigo.geneontol...
GO GO:0005737 View Gene Set 3.785e-11 7676 4.011e-08 12 cytoplasm amigo.geneontol...
GO GO:0006810 View Gene Set 6.312e-11 2892 5.622e-08 14 transport amigo.geneontol...
GO GO:0005887 View Gene Set 6.045e-11 1186 5.622e-08 14 integral to plasma membrane amigo.geneontol...
GO GO:0032501 View Gene Set 1.652e-10 4631 1.244e-07 16 multicellular organismal process amigo.geneontol...
GO GO:0031410 View Gene Set 1.559e-10 688 1.244e-07 16 cytoplasmic vesicle amigo.geneontol...
GO GO:0031988 View Gene Set 1.676e-10 670 1.244e-07 16 membrane-bounded vesicle amigo.geneontol...
GO GO:0000267 View Gene Set 2.519e-10 1077 1.771e-07 19 cell fraction amigo.geneontol...
GO GO:0023052 View Gene Set 2.936e-10 3571 1.954e-07 20 signaling amigo.geneontol...
GO GO:0031982 View Gene Set 3.072e-10 718 1.954e-07 20 vesicle amigo.geneontol...
GO GO:0016023 View Gene Set 3.316e-10 651 2.014e-07 22 cytoplasmic membrane-bounded vesicle amigo.geneontol...
GO GO:0051234 View Gene Set 3.771e-10 2928 2.191e-07 23 establishment of localization amigo.geneontol...
GO GO:0008202 View Gene Set 1.789e-09 238 9.956e-07 24 steroid metabolic process amigo.geneontol...
GO GO:0012505 View Gene Set 2.771e-09 1454 1.481e-06 25 endomembrane system amigo.geneontol...
GO GO:0023046 View Gene Set 3.958e-09 2577 2.034e-06 26 signaling process amigo.geneontol...
GO GO:0023060 View Gene Set 5.142e-09 2571 2.545e-06 27 signal transmission amigo.geneontol...
GO GO:0006629 View Gene Set 5.554e-09 910 2.65e-06 28 lipid metabolic process amigo.geneontol...
GO GO:0005794 View Gene Set 6.165e-09 893 2.84e-06 29 Golgi apparatus amigo.geneontol...
GO GO:0031090 View Gene Set 8.484e-09 1905 3.778e-06 30 organelle membrane amigo.geneontol...
GO GO:0065008 View Gene Set 9.253e-09 1741 3.988e-06 31 regulation of biological quality amigo.geneontol...
GO GO:0010033 View Gene Set 1.386e-08 903 5.785e-06 32 response to organic substance amigo.geneontol...
GO GO:0006575 View Gene Set 2.356e-08 183 9.537e-06 33 cellular amino acid derivative metabolic process amigo.geneontol...
GO GO:0005626 View Gene Set 2.756e-08 830 1.083e-05 34 insoluble fraction amigo.geneontol...
GO GO:0032879 View Gene Set 3.199e-08 741 1.221e-05 35 regulation of localization amigo.geneontol...
GO GO:0005576 View Gene Set 3.324e-08 2036 1.234e-05 36 extracellular region amigo.geneontol...
GO GO:0016054 View Gene Set 4.433e-08 127 1.463e-05 37 organic acid catabolic process amigo.geneontol...
GO GO:0016192 View Gene Set 4.096e-08 672 1.463e-05 37 vesicle-mediated transport amigo.geneontol...
GO GO:0019752 View Gene Set 4.489e-08 613 1.463e-05 37 carboxylic acid metabolic process amigo.geneontol...
GO GO:0043436 View Gene Set 4.489e-08 613 1.463e-05 37 oxoacid metabolic process amigo.geneontol...
GO GO:0046395 View Gene Set 4.433e-08 127 1.463e-05 37 carboxylic acid catabolic process amigo.geneontol...
GO GO:0006082 View Gene Set 4.884e-08 620 1.553e-05 42 organic acid metabolic process amigo.geneontol...
GO GO:0005783 View Gene Set 5.666e-08 1024 1.76e-05 43 endoplasmic reticulum amigo.geneontol...
GO GO:0005624 View Gene Set 7.255e-08 799 2.203e-05 44 membrane fraction amigo.geneontol...
GO GO:0016126 View Gene Set 8.128e-08 42 2.413e-05 45 sterol biosynthetic process amigo.geneontol...
GO GO:0003824 View Gene Set 1.024e-07 5198 2.974e-05 46 catalytic activity amigo.geneontol...
GO GO:0006066 View Gene Set 1.102e-07 471 3.132e-05 47 alcohol metabolic process amigo.geneontol...
GO GO:0005773 View Gene Set 1.366e-07 286 3.803e-05 48 vacuole amigo.geneontol...
GO GO:0007165 View Gene Set 1.752e-07 2232 4.776e-05 49 signal transduction amigo.geneontol...
GO GO:0044283 View Gene Set 1.887e-07 589 5.042e-05 50 small molecule biosynthetic process amigo.geneontol...
GO GO:0042180 View Gene Set 2.244e-07 627 5.879e-05 51 cellular ketone metabolic process amigo.geneontol...
GO GO:0006811 View Gene Set 2.452e-07 829 6.3e-05 52 ion transport amigo.geneontol...
GO GO:0004871 View Gene Set 2.996e-07 2128 7.411e-05 53 signal transducer activity amigo.geneontol...
GO GO:0060089 View Gene Set 2.996e-07 2128 7.411e-05 53 molecular transducer activity amigo.geneontol...
GO GO:0051049 View Gene Set 3.631e-07 525 8.821e-05 55 regulation of transport amigo.geneontol...
GO GO:0009605 View Gene Set 4.575e-07 666 0.0001091 56 response to external stimulus amigo.geneontol...
GO GO:0030136 View Gene Set 5.083e-07 147 0.0001191 57 clathrin-coated vesicle amigo.geneontol...
GO GO:0006812 View Gene Set 6.356e-07 587 0.0001464 58 cation transport amigo.geneontol...
GO GO:0005509 View Gene Set 7.371e-07 626 0.0001669 59 calcium ion binding amigo.geneontol...
GO GO:0009611 View Gene Set 7.576e-07 621 0.0001687 60 response to wounding amigo.geneontol...
GO GO:0030135 View Gene Set 8.826e-07 179 0.0001933 61 coated vesicle amigo.geneontol...
GO GO:0044432 View Gene Set 1.161e-06 689 0.0002501 62 endoplasmic reticulum part amigo.geneontol...
GO GO:0044282 View Gene Set 1.24e-06 441 0.0002629 63 small molecule catabolic process amigo.geneontol...
GO GO:0005789 View Gene Set 1.281e-06 622 0.0002673 64 endoplasmic reticulum membrane amigo.geneontol...
GO GO:0032787 View Gene Set 1.39e-06 356 0.0002857 65 monocarboxylic acid metabolic process amigo.geneontol...
GO GO:0042175 View Gene Set 2.377e-06 637 0.0004783 66 nuclear membrane-endoplasmic reticulum network amigo.geneontol...
GO GO:0004872 View Gene Set 2.399e-06 1688 0.0004783 66 receptor activity amigo.geneontol...
GO GO:0042995 View Gene Set 2.496e-06 766 0.0004903 68 cell projection amigo.geneontol...
GO GO:0034220 View Gene Set 2.737e-06 93 0.0005299 69 ion transmembrane transport amigo.geneontol...
GO GO:0044421 View Gene Set 3.111e-06 1001 0.0005937 70 extracellular region part amigo.geneontol...
GO GO:0055114 View Gene Set 3.185e-06 647 0.0005993 71 oxidation reduction amigo.geneontol...
GO GO:0044255 View Gene Set 3.503e-06 588 0.0006411 72 cellular lipid metabolic process amigo.geneontol...
GO GO:0046483 View Gene Set 3.48e-06 611 0.0006411 72 heterocycle metabolic process amigo.geneontol...
GO GO:0006954 View Gene Set 3.62e-06 380 0.0006535 74 inflammatory response amigo.geneontol...
GO GO:0007154 View Gene Set 3.715e-06 1687 0.0006618 75 cell communication amigo.geneontol...
GO GO:0042592 View Gene Set 4.049e-06 844 0.0007117 76 homeostatic process amigo.geneontol...
GO GO:0071212 View Gene Set 4.665e-06 723 0.0008095 77 subsynaptic reticulum amigo.geneontol...
GO GO:0016125 View Gene Set 4.981e-06 105 0.0008532 78 sterol metabolic process amigo.geneontol...
GO GO:0007267 View Gene Set 5.201e-06 720 0.0008686 79 cell-cell signaling amigo.geneontol...
GO GO:0004888 View Gene Set 5.161e-06 1275 0.0008686 79 transmembrane receptor activity amigo.geneontol...
GO GO:0009308 View Gene Set 5.348e-06 414 0.0008821 81 amine metabolic process amigo.geneontol...
GO GO:0007166 View Gene Set 5.5e-06 1497 0.0008961 82 cell surface receptor linked signaling pathway amigo.geneontol...
GO GO:0006519 View Gene Set 6.367e-06 371 0.001013 83 cellular amino acid and derivative metabolic process amigo.geneontol...
GO GO:0006790 View Gene Set 6.339e-06 130 0.001013 83 sulfur metabolic process amigo.geneontol...
GO GO:0030662 View Gene Set 6.98e-06 105 0.001097 85 coated vesicle membrane amigo.geneontol...
GO GO:0000323 View Gene Set 8.135e-06 239 0.001249 86 lytic vacuole amigo.geneontol...
GO GO:0005764 View Gene Set 8.135e-06 239 0.001249 86 lysosome amigo.geneontol...
GO GO:0051050 View Gene Set 8.355e-06 280 0.001268 88 positive regulation of transport amigo.geneontol...
GO GO:0030659 View Gene Set 8.648e-06 235 0.001298 89 cytoplasmic vesicle membrane amigo.geneontol...
GO GO:0044431 View Gene Set 9.467e-06 540 0.001405 90 Golgi apparatus part amigo.geneontol...
GO GO:0023033 View Gene Set 9.883e-06 2547 0.001451 91 signaling pathway amigo.geneontol...
GO GO:0003008 View Gene Set 1.156e-05 1632 0.001677 92 system process amigo.geneontol...
GO GO:0012506 View Gene Set 1.167e-05 246 0.001677 92 vesicle membrane amigo.geneontol...
GO GO:0009141 View Gene Set 1.228e-05 267 0.001745 94 nucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0048878 View Gene Set 1.287e-05 563 0.00181 95 chemical homeostasis amigo.geneontol...
GO GO:0033176 View Gene Set 1.324e-05 20 0.001843 96 proton-transporting V-type ATPase complex amigo.geneontol...
GO GO:0009144 View Gene Set 1.37e-05 258 0.001887 97 purine nucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0044271 View Gene Set 1.435e-05 466 0.001936 98 cellular nitrogen compound biosynthetic process amigo.geneontol...
GO GO:0044433 View Gene Set 1.423e-05 274 0.001936 98 cytoplasmic vesicle part amigo.geneontol...
GO GO:0022891 View Gene Set 1.633e-05 823 0.002161 100 substrate-specific transmembrane transporter activity amigo.geneontol...
GO GO:0048037 View Gene Set 1.618e-05 249 0.002161 100 cofactor binding amigo.geneontol...
GO GO:0006793 View Gene Set 1.67e-05 1308 0.002166 102 phosphorus metabolic process amigo.geneontol...
GO GO:0006796 View Gene Set 1.67e-05 1308 0.002166 102 phosphate metabolic process amigo.geneontol...
GO GO:0006695 View Gene Set 1.901e-05 33 0.002442 104 cholesterol biosynthetic process amigo.geneontol...
GO GO:0016491 View Gene Set 1.921e-05 689 0.002445 105 oxidoreductase activity amigo.geneontol...
GO GO:0009310 View Gene Set 2.089e-05 80 0.002633 106 amine catabolic process amigo.geneontol...
GO GO:0048731 View Gene Set 2.186e-05 2544 0.002729 107 system development amigo.geneontol...
GO GO:0022857 View Gene Set 2.282e-05 905 0.002822 108 transmembrane transporter activity amigo.geneontol...
GO GO:0007169 View Gene Set 2.362e-05 296 0.002828 109 transmembrane receptor protein tyrosine kinase signaling pathway amigo.geneontol...
GO GO:0061024 View Gene Set 2.344e-05 446 0.002828 109 membrane organization amigo.geneontol...
GO GO:0031012 View Gene Set 2.371e-05 371 0.002828 109 extracellular matrix amigo.geneontol...
GO GO:0008324 View Gene Set 2.331e-05 548 0.002828 109 cation transmembrane transporter activity amigo.geneontol...
GO GO:0048856 View Gene Set 2.505e-05 2763 0.002961 113 anatomical structure development amigo.geneontol...
GO GO:0030665 View Gene Set 2.632e-05 79 0.003085 114 clathrin coated vesicle membrane amigo.geneontol...
GO GO:0009063 View Gene Set 2.744e-05 70 0.00316 115 cellular amino acid catabolic process amigo.geneontol...
GO GO:0035556 View Gene Set 2.737e-05 1205 0.00316 115 intracellular signal transduction amigo.geneontol...
GO GO:0017124 View Gene Set 2.892e-05 100 0.003302 117 SH3 domain binding amigo.geneontol...
GO GO:0016044 View Gene Set 2.987e-05 445 0.003382 118 cellular membrane organization amigo.geneontol...
GO GO:0016469 View Gene Set 3.149e-05 46 0.003535 119 proton-transporting two-sector ATPase complex amigo.geneontol...
GO GO:0007275 View Gene Set 3.3e-05 3067 0.003674 120 multicellular organismal development amigo.geneontol...
GO GO:0009205 View Gene Set 3.704e-05 253 0.00409 121 purine ribonucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0022890 View Gene Set 3.736e-05 215 0.004091 122 inorganic cation transmembrane transporter activity amigo.geneontol...
GO GO:0046903 View Gene Set 4.185e-05 502 0.004546 123 secretion amigo.geneontol...
GO GO:0006163 View Gene Set 4.365e-05 446 0.004688 124 purine nucleotide metabolic process amigo.geneontol...
GO GO:0015075 View Gene Set 4.386e-05 715 0.004688 124 ion transmembrane transporter activity amigo.geneontol...
GO GO:0006631 View Gene Set 4.622e-05 245 0.004901 126 fatty acid metabolic process amigo.geneontol...
GO GO:0016769 View Gene Set 5.22e-05 30 0.005491 127 transferase activity transferring nitrogenous groups amigo.geneontol...
GO GO:0006694 View Gene Set 5.777e-05 109 0.00603 128 steroid biosynthetic process amigo.geneontol...
GO GO:0048869 View Gene Set 6.099e-05 1883 0.006316 129 cellular developmental process amigo.geneontol...
GO GO:0005615 View Gene Set 6.157e-05 752 0.006327 130 extracellular space amigo.geneontol...
GO GO:0006818 View Gene Set 6.227e-05 67 0.006351 131 hydrogen transport amigo.geneontol...
GO GO:0009199 View Gene Set 6.481e-05 254 0.006462 132 ribonucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0030154 View Gene Set 6.478e-05 1834 0.006462 132 cell differentiation amigo.geneontol...
GO GO:0032502 View Gene Set 6.384e-05 3351 0.006462 132 developmental process amigo.geneontol...
GO GO:0009145 View Gene Set 7.642e-05 101 0.007562 135 purine nucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0055086 View Gene Set 8.435e-05 580 0.008287 136 nucleobase nucleoside and nucleotide metabolic process amigo.geneontol...
GO GO:0006754 View Gene Set 8.862e-05 90 0.008642 137 ATP biosynthetic process amigo.geneontol...
GO GO:0009142 View Gene Set 9.082e-05 103 0.008793 138 nucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0022804 View Gene Set 9.348e-05 343 0.008985 139 active transmembrane transporter activity amigo.geneontol...
GO GO:0009719 View Gene Set 9.987e-05 513 0.009506 140 response to endogenous stimulus amigo.geneontol...
GO GO:0016787 View Gene Set 0.0001003 2285 0.009506 140 hydrolase activity amigo.geneontol...
GO GO:0009309 View Gene Set 0.0001013 83 0.009535 142 amine biosynthetic process amigo.geneontol...
GO GO:0006897 View Gene Set 0.0001171 276 0.01086 143 endocytosis amigo.geneontol...
GO GO:0010324 View Gene Set 0.0001171 276 0.01086 143 membrane invagination amigo.geneontol...
GO GO:0009206 View Gene Set 0.0001221 100 0.01125 145 purine ribonucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0003001 View Gene Set 0.0001239 187 0.01126 146 generation of a signal involved in cell-cell signaling amigo.geneontol...
GO GO:0023061 View Gene Set 0.0001239 187 0.01126 146 signal release amigo.geneontol...
GO GO:0008203 View Gene Set 0.0001285 96 0.0116 148 cholesterol metabolic process amigo.geneontol...
GO GO:0006753 View Gene Set 0.000132 557 0.01168 149 nucleoside phosphate metabolic process amigo.geneontol...
GO GO:0009117 View Gene Set 0.000132 557 0.01168 149 nucleotide metabolic process amigo.geneontol...
GO GO:0016310 View Gene Set 0.0001306 1141 0.01168 149 phosphorylation amigo.geneontol...
GO GO:0015992 View Gene Set 0.0001336 65 0.01174 152 proton transport amigo.geneontol...
GO GO:0005975 View Gene Set 0.0001383 550 0.01207 153 carbohydrate metabolic process amigo.geneontol...
GO GO:0044437 View Gene Set 0.0001442 138 0.01251 154 vacuolar part amigo.geneontol...
GO GO:0046034 View Gene Set 0.0001477 100 0.01273 155 ATP metabolic process amigo.geneontol...
GO GO:0016408 View Gene Set 0.0001537 16 0.01316 156 C-acyltransferase activity amigo.geneontol...
GO GO:0006952 View Gene Set 0.00016 717 0.01362 157 defense response amigo.geneontol...
GO GO:0015985 View Gene Set 0.0001636 42 0.01373 158 energy coupled proton transport down electrochemical gradient amigo.geneontol...
GO GO:0015986 View Gene Set 0.0001636 42 0.01373 158 ATP synthesis coupled proton transport amigo.geneontol...
GO GO:0005792 View Gene Set 0.0001644 244 0.01373 158 microsome amigo.geneontol...
GO GO:0007610 View Gene Set 0.0001716 492 0.01424 161 behavior amigo.geneontol...
GO GO:0050662 View Gene Set 0.0001729 176 0.01426 162 coenzyme binding amigo.geneontol...
GO GO:0032940 View Gene Set 0.00018 392 0.01475 163 secretion by cell amigo.geneontol...
GO GO:0055085 View Gene Set 0.0001831 761 0.01482 164 transmembrane transport amigo.geneontol...
GO GO:0005215 View Gene Set 0.0001826 1174 0.01482 164 transporter activity amigo.geneontol...
GO GO:0042398 View Gene Set 0.000209 58 0.01682 166 cellular amino acid derivative biosynthetic process amigo.geneontol...
GO GO:0016197 View Gene Set 0.0002103 72 0.01682 167 endosome transport amigo.geneontol...
GO GO:0006816 View Gene Set 0.0002118 196 0.01684 168 calcium ion transport amigo.geneontol...
GO GO:0022892 View Gene Set 0.0002136 964 0.01688 169 substrate-specific transporter activity amigo.geneontol...
GO GO:0016614 View Gene Set 0.0002177 115 0.01711 170 oxidoreductase activity acting on CH-OH group of donors amigo.geneontol...
GO GO:0030030 View Gene Set 0.0002305 458 0.01801 171 cell projection organization amigo.geneontol...
GO GO:0030001 View Gene Set 0.0002363 496 0.01833 172 metal ion transport amigo.geneontol...
GO GO:0051046 View Gene Set 0.0002373 243 0.01833 172 regulation of secretion amigo.geneontol...
GO GO:0000139 View Gene Set 0.0002429 450 0.01865 174 Golgi membrane amigo.geneontol...
GO GO:0019226 View Gene Set 0.0002547 421 0.01945 175 transmission of nerve impulse amigo.geneontol...
GO GO:0009201 View Gene Set 0.0002697 101 0.02008 176 ribonucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0034404 View Gene Set 0.0002676 298 0.02008 176 nucleobase nucleoside and nucleotide biosynthetic process amigo.geneontol...
GO GO:0034654 View Gene Set 0.0002676 298 0.02008 176 nucleobase nucleoside nucleotide and nucleic acid biosynthetic process amigo.geneontol...
GO GO:0019717 View Gene Set 0.0002705 94 0.02008 176 synaptosome amigo.geneontol...
GO GO:0042598 View Gene Set 0.0002698 251 0.02008 176 vesicular fraction amigo.geneontol...
GO GO:0048513 View Gene Set 0.0002721 1931 0.02008 181 organ development amigo.geneontol...
GO GO:0004672 View Gene Set 0.0002788 594 0.02047 182 protein kinase activity amigo.geneontol...
GO GO:0006164 View Gene Set 0.000302 252 0.02205 183 purine nucleotide biosynthetic process amigo.geneontol...
GO GO:0007167 View Gene Set 0.0003101 475 0.02237 184 enzyme linked receptor protein signaling pathway amigo.geneontol...
GO GO:0009165 View Gene Set 0.0003114 291 0.02237 184 nucleotide biosynthetic process amigo.geneontol...
GO GO:0016773 View Gene Set 0.0003113 708 0.02237 184 phosphotransferase activity alcohol group as acceptor amigo.geneontol...
GO GO:0005774 View Gene Set 0.0003171 131 0.02266 187 vacuolar membrane amigo.geneontol...
GO GO:0009986 View Gene Set 0.0003269 350 0.02323 188 cell surface amigo.geneontol...
GO GO:0016301 View Gene Set 0.0003381 769 0.0239 189 kinase activity amigo.geneontol...
GO GO:0050801 View Gene Set 0.000351 441 0.02468 190 ion homeostasis amigo.geneontol...
GO GO:0070665 View Gene Set 0.0003536 66 0.02473 191 positive regulation of leukocyte proliferation amigo.geneontol...
GO GO:0030234 View Gene Set 0.0003635 874 0.0253 192 enzyme regulator activity amigo.geneontol...
GO GO:0044057 View Gene Set 0.0003928 315 0.02719 193 regulation of system process amigo.geneontol...
GO GO:0006767 View Gene Set 0.0004029 39 0.02774 194 water-soluble vitamin metabolic process amigo.geneontol...
GO GO:0030258 View Gene Set 0.000411 101 0.02816 195 lipid modification amigo.geneontol...
GO GO:0016616 View Gene Set 0.0004168 104 0.02841 196 oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor amigo.geneontol...
GO GO:0030054 View Gene Set 0.0004434 539 0.03007 197 cell junction amigo.geneontol...
GO GO:0070838 View Gene Set 0.0004626 203 0.03105 198 divalent metal ion transport amigo.geneontol...
GO GO:0042625 View Gene Set 0.0004621 69 0.03105 198 ATPase activity coupled to transmembrane movement of ions amigo.geneontol...
GO GO:0006576 View Gene Set 0.0004658 101 0.03111 200 cellular biogenic amine metabolic process amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr3q25 View Gene Set 2.352e-06 61 0.0007668 1 Genes in cytogenetic band chr3q25 www.broad.mit.e...
Broad chr8p22 View Gene Set 6.196e-05 37 0.0101 2 Genes in cytogenetic band chr8p22 www.broad.mit.e...
Broad chr3p14 View Gene Set 0.0001706 50 0.01854 3 Genes in cytogenetic band chr3p14 www.broad.mit.e...
Broad chr6q23 View Gene Set 0.0005651 66 0.04606 4 Genes in cytogenetic band chr6q23 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 7.202e-43 399 1.723e-39 1 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 8.866e-33 268 1.06e-29 2 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 2.598e-26 944 2.072e-23 3 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 4.518e-26 453 2.702e-23 4 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 View Gene Set 6.642e-24 681 3.178e-21 5 The 'group 3 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5 View Gene Set 2.073e-20 446 8.265e-18 6 The 'group 5 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 but not ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 4.169e-20 1582 1.425e-17 7 Genes up-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_UP View Gene Set 2.192e-19 178 6.553e-17 8 Genes up-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad MASSARWEH_TAMOXIFEN_RESISTANCE_UP View Gene Set 1.058e-17 531 2.813e-15 9 Genes up-regulated in breast cancer tumors (formed by MCF-7 xenografts) resistant to tamoxifen [PubChem=5376]. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 1.879e-17 504 4.493e-15 10 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad NAGASHIMA_NRG1_SIGNALING_UP View Gene Set 4.079e-15 171 8.87e-13 11 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [Gene ID=3084]. www.broad.mit.e...
Broad DELYS_THYROID_CANCER_UP View Gene Set 6.988e-14 397 1.393e-11 12 Genes up-regulated in papillary thyroid carcinoma (PTC) compared to normal tissue. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_UP View Gene Set 3.191e-13 99 5.871e-11 13 Genes up-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN View Gene Set 9.803e-13 361 1.675e-10 14 Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 2.028e-12 783 3.234e-10 15 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad GOZGIT_ESR1_TARGETS_DN View Gene Set 2.693e-12 710 4.027e-10 16 Genes down-regulated in TMX2-28 cells (breast cancer) which do not express ESR1 [Gene ID=2099]) compared to the parental MCF7 cells which do. www.broad.mit.e...
Broad PEREZ_TP53_TARGETS View Gene Set 3.556e-12 1066 5.004e-10 17 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of TP53 [Gene ID=7157] off adenoviral vector. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 4.31e-12 517 5.728e-10 18 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_UP View Gene Set 9.912e-12 163 1.248e-09 19 Genes up-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 1.078e-11 140 1.289e-09 20 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_UP View Gene Set 1.135e-11 96 1.293e-09 21 Genes up-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_DN View Gene Set 1.318e-11 217 1.433e-09 22 Genes down-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 1.539e-11 471 1.601e-09 23 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_UP View Gene Set 1.984e-11 249 1.977e-09 24 Genes up-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_UP View Gene Set 2.272e-11 413 2.174e-09 25 Genes up-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad PEREZ_TP63_TARGETS View Gene Set 2.538e-11 328 2.335e-09 26 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vector. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 2.76e-11 532 2.445e-09 27 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_UP View Gene Set 3.041e-11 284 2.598e-09 28 Genes up-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_UP View Gene Set 9.293e-11 208 7.665e-09 29 Genes up-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK). www.broad.mit.e...
Broad GAJATE_RESPONSE_TO_TRABECTEDIN_UP View Gene Set 1.507e-10 53 1.202e-08 30 Genes up-regulated in HeLa cells (cervical carcinoma) by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 2.315e-10 509 1.73e-08 31 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP View Gene Set 2.296e-10 716 1.73e-08 31 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad UZONYI_RESPONSE_TO_LEUKOTRIENE_AND_THROMBIN View Gene Set 4.949e-10 37 3.587e-08 33 Genes up-regulated in HUVEC cells (primary endothelium) after stimulation with leukotriene LTD4 [PubChem=3908] or thrombin (F2) [Gene ID=2147] for 1 h. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 5.712e-10 353 4.019e-08 34 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 6.651e-10 402 4.546e-08 35 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad JAEGER_METASTASIS_DN View Gene Set 1.094e-09 252 7.266e-08 36 Genes down-regulated in metastases from malignant melanoma compared to the primary tumors. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_BY_DMOG_UP View Gene Set 1.124e-09 125 7.266e-08 36 Genes up-regulated in MCF7 cells (breast cancer) treated with hypoxia mimetic DMOG [PubChem=3080614]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 1.349e-09 422 8.491e-08 38 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP View Gene Set 1.424e-09 178 8.736e-08 39 Genes up-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_60_MCF10A View Gene Set 1.718e-09 56 1.027e-07 40 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN View Gene Set 1.943e-09 306 1.107e-07 41 Genes down-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad RIGGI_EWING_SARCOMA_PROGENITOR_UP View Gene Set 1.924e-09 399 1.107e-07 41 Genes up-regulated in mesenchymal stem cells (MSC) engineered to express EWS-FLI1 [Gene ID=2130 2321] fusion protein. www.broad.mit.e...
Broad LE_EGR2_TARGETS_DN View Gene Set 2.017e-09 100 1.122e-07 43 Genes down-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959]. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 2.125e-09 182 1.13e-07 44 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad HAN_SATB1_TARGETS_DN View Gene Set 2.123e-09 320 1.13e-07 44 Genes down-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad SUNG_METASTASIS_STROMA_UP View Gene Set 2.447e-09 106 1.272e-07 46 Genes up-regulated in metastatic vs non-metastatic stromal cells originated from either bone or prostate tissues. www.broad.mit.e...
Broad UEDA_PERIFERAL_CLOCK View Gene Set 3.067e-09 146 1.561e-07 47 Molecular timetable composed of 162 time-indicating genes (182 probes) in the peripheral (liver) clock. www.broad.mit.e...
Broad HESS_TARGETS_OF_HOXA9_AND_MEIS1_DN View Gene Set 3.697e-09 70 1.827e-07 48 Genes down-regulated in hematopoietic precursor cells conditionally expressing HOXA9 and MEIS1 [Gene ID=3205 4211]. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_UP View Gene Set 3.742e-09 394 1.827e-07 48 Genes up-regulated in peripheral blood mononucleocytes by HGF [Gene ID=3082] compared to those regulated by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_DN View Gene Set 6.826e-09 397 3.265e-07 50 Genes down-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 9.854e-09 583 4.584e-07 51 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_UP View Gene Set 9.965e-09 409 4.584e-07 51 Genes up-regulated in peripheral blood monocytes by HGF [Gene ID=3082]. www.broad.mit.e...
Broad KOBAYASHI_RESPONSE_TO_ROMIDEPSIN View Gene Set 1.201e-08 19 5.42e-07 53 Genes up-regulated in MM-LH cells (malignant melanoma) after treatment with the HDAC inhibitor romidepsin (FK228) [PubChem=5352062]. www.broad.mit.e...
Broad DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_UP View Gene Set 1.973e-08 247 8.738e-07 54 Genes up-regulated in RD cells (embryonal rhabdomyosarcoma ERMS) by expression of PAX3- or PAX7-FOXO1 [Gene ID=5077 5081 2308] fusions off retroviral vectors. www.broad.mit.e...
Broad CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP View Gene Set 2.911e-08 228 1.261e-06 55 Genes up-regulated in SH-SY5Y cells (neuroblastoma) after treatment with epoxomicin [PubChem=3035402] a protease inhibitor causing apoptosis. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_DN View Gene Set 2.953e-08 301 1.261e-06 55 Genes down-regulated in peripheral blood monocytes by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2B View Gene Set 3.507e-08 384 1.472e-06 57 Genes specifically up-regulated in Cluster IIb of urothelial cell carcinom (UCC) tumors. www.broad.mit.e...
Broad ELVIDGE_HIF1A_AND_HIF2A_TARGETS_DN View Gene Set 3.996e-08 100 1.648e-06 58 Genes down-regulated in MCF7 cells (breast cancer) after knockdown of both HIF1A and HIF2A [Gene ID=3091 2034] by RNAi. www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_DN View Gene Set 4.3e-08 211 1.743e-06 59 Genes down-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN View Gene Set 4.612e-08 485 1.839e-06 60 Genes down-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S3 View Gene Set 5.071e-08 266 1.989e-06 61 Genes from 'subtype S3' signature of hepatocellular carcinoma (HCC): hepatocyte differentiation. www.broad.mit.e...
Broad CHIBA_RESPONSE_TO_TSA View Gene Set 5.215e-08 38 2.012e-06 62 Genes up-regulated in more than one of several human hepatoma cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 5.963e-08 296 2.264e-06 63 Genes down-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP View Gene Set 7.108e-08 224 2.542e-06 64 Genes up-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_DN View Gene Set 7.108e-08 224 2.542e-06 64 Genes down-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad TAVOR_CEBPA_TARGETS_UP View Gene Set 7.195e-08 45 2.542e-06 64 Genes up-regulated in KCL22 cells (chronic myelogenous leukemia CML with BCR-ABL1 [GeneID=613 25] fusion) by expression of CEBPA [GeneID=1050]. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_DN View Gene Set 7.108e-08 549 2.542e-06 64 Genes down-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad SATO_SILENCED_BY_DEACETYLATION_IN_PANCREATIC_CANCER View Gene Set 7.228e-08 48 2.542e-06 64 50 most interesting genes up-regulated in pancreatic cancer cell lines (AsPC1 Hs766T MiaPaCa2 Panc1) but not in the non-neoplastic cells (HPDE) by TSA [PubChem=5562]. www.broad.mit.e...
Broad MANALO_HYPOXIA_UP View Gene Set 7.388e-08 197 2.561e-06 69 Genes up-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 7.501e-08 301 2.563e-06 70 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_60_MCF10A View Gene Set 8.447e-08 38 2.846e-06 71 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 1.022e-07 437 3.35e-06 72 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_CTNNB1_DN View Gene Set 1.016e-07 144 3.35e-06 72 Top 200 marker genes down-regulated in the 'CTNNB1' subclass of hepatocellular carcinoma (HCC); characterized by activated CTNNB1 [Gene ID=1499]. www.broad.mit.e...
Broad YAGI_AML_FAB_MARKERS View Gene Set 1.252e-07 189 4.046e-06 74 Genes specifically expressed in FAB subtypes M2 M4 M5 and M7 of pediatric AML (acute myeloid leukemia). www.broad.mit.e...
Broad FARMER_BREAST_CANCER_APOCRINE VS LUMINAL View Gene Set 1.315e-07 312 4.193e-06 75 Genes which best discriminate between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: apocrine (ESR1- AR+) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN View Gene Set 1.849e-07 431 5.821e-06 76 Genes down-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad MENSE_HYPOXIA_UP View Gene Set 1.922e-07 94 5.97e-06 77 Hypoxia response genes in both astrocytes and HeLa cell line. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_DN View Gene Set 2.03e-07 664 6.227e-06 78 Genes down-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad BRUECKNER_TARGETS_OF_MIRLET7A3_UP View Gene Set 2.215e-07 105 6.705e-06 79 Genes up-regulated in A549 cells (lung cancer) expressing MIRLET7A3 [Gene ID=406883] microRNA off a plasmid vector. www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_HSC_UP View Gene Set 2.603e-07 182 7.593e-06 80 Genes up-regulated in normal hematopoietic progenitors by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad PEREZ_TP53_AND_TP63_TARGETS View Gene Set 2.564e-07 187 7.593e-06 80 Genes up-regulated in HMEC cells (primary mammary epithelium) upon expression of both of TP53 [Gene ID=7157] and the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vectors. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_UP View Gene Set 2.573e-07 145 7.593e-06 80 Genes up-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad KIM_MYCN_AMPLIFICATION_TARGETS_DN View Gene Set 2.725e-07 78 7.852e-06 83 Genes negatively correlated with amplifications of MYCN [Gene ID=4613] in the SCLC (small cell lung cancer) cell lines. www.broad.mit.e...
Broad PICCALUGA_ANGIOIMMUNOBLASTIC_LYMPHOMA_DN View Gene Set 2.845e-07 123 8.101e-06 84 Down-regulated genes in angioimmunoblastic lymphoma (AILT) compared to normal T lymphocytes. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_UP View Gene Set 3.148e-07 64 8.86e-06 85 Genes up-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad MCLACHLAN_DENTAL_CARIES_DN View Gene Set 3.276e-07 234 9.112e-06 86 Genes down-regulated in pulpal tissue extracted from carious teeth. www.broad.mit.e...
Broad DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP View Gene Set 3.388e-07 317 9.312e-06 87 Genes up-regulated in mARMS (molecular ARMS) compared to the mERMS (molecular ERMS) class of rhabdomyosarcoma tumors. www.broad.mit.e...
Broad RAGHAVACHARI_PLATELET_SPECIFIC_GENES View Gene Set 3.426e-07 68 9.312e-06 87 Genes in this set correspond to the most abuntant transcripts that are also specific to platelets. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_DN View Gene Set 3.79e-07 230 1.019e-05 89 Genes down-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad GERY_CEBP_TARGETS View Gene Set 4.149e-07 115 1.101e-05 90 Genes changed in NIH 3T3 cells (embryonic fibroblast) by expression of one or more of C/EBP proteins: CEBPA CEBPB CEBPG and CEBPD [Gene ID=1050 1051 1054 1052]. www.broad.mit.e...
Broad HINATA_NFKB_TARGETS_KERATINOCYTE_UP View Gene Set 4.188e-07 71 1.101e-05 90 Genes up-regulated in primary keratinocytes by expression of p50 (NFKB1) and p65 (RELA) [Gene ID=4790 5970] components of NFKB. www.broad.mit.e...
Broad LU_AGING_BRAIN_DN View Gene Set 5.105e-07 255 1.321e-05 92 Genes down-regulated in postmortem brain frontal cortex samples from old subjects compared to those from the young ones. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 5.134e-07 1209 1.321e-05 92 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_DN View Gene Set 6.945e-07 264 1.767e-05 94 Genes down-regulated in hepatoblastoma samples compared to normal liver tissue. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_UP View Gene Set 7.303e-07 55 1.839e-05 95 Common up-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad LIN_SILENCED_BY_TUMOR_MICROENVIRONMENT View Gene Set 7.593e-07 100 1.892e-05 96 Genes downregulated in MCF10A cells (breast cancer) co-cultured with cancer-associated fibroblasts (CAF). www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_UP View Gene Set 7.684e-07 401 1.895e-05 97 Genes up-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad NAGASHIMA_EGF_SIGNALING_UP View Gene Set 7.902e-07 57 1.929e-05 98 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with EGF [Gene ID=1950]. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_UP View Gene Set 8.27e-07 157 1.998e-05 99 Genes up-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad SATO_SILENCED_BY_METHYLATION_IN_PANCREATIC_CANCER_1 View Gene Set 9.411e-07 407 2.251e-05 100 Genes up-regulated in the pancreatic cancer cell lines (AsPC1 Hs766T MiaPaCa2 Panc1) but not in the non-neoplastic cells (HPDE) by decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP View Gene Set 1.207e-06 257 2.858e-05 101 Genes up-regulated in post-GC BCL6 [Gene ID=604] dependent B cell non-Hodgkin's lymphoma (B-NHL) vs MYC [Gene ID=4609] driven pre-GC lymphoma; GC = germinal center. www.broad.mit.e...
Broad LU_AGING_BRAIN_UP View Gene Set 1.242e-06 146 2.912e-05 102 Genes up-regulated in postmortem brain frontal cortex samples from old subjects compared to those from the young ones. www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_DN View Gene Set 1.265e-06 446 2.938e-05 103 Genes down-regulated in prostate cancer samples. www.broad.mit.e...
Broad MAHADEVAN_RESPONSE_TO_MP470_DN View Gene Set 1.28e-06 16 2.943e-05 104 Top genes up-regulated in the GIST (gastrointestinal stromal tumor) cell line sensitive to imatinib [PubChem=5291] after treatment with MP470 a protein kinase inhibitor. www.broad.mit.e...
Broad KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP View Gene Set 1.344e-06 126 3.048e-05 105 Genes up-regulated in glioma cell lines treated with both decitabine [PubChem=451668] and TSA [PubChem=5562]. www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_UP View Gene Set 1.363e-06 175 3.048e-05 105 Genes up-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad ZHANG_TARGETS_OF_EWSR1_FLI1_FUSION View Gene Set 1.364e-06 84 3.048e-05 105 Genes up-regulated in RD-EF cells (rhabdomyosarcoma) engineered to express EWSR1-FLI1 fusion [Gene ID=2130 2313] and which are also highly expressed in Ewing's famliy tumors. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP View Gene Set 1.587e-06 331 3.516e-05 108 Genes up-regulated in peripheral blood monocytes by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_8D_DN View Gene Set 1.727e-06 192 3.79e-05 109 Genes down-regulated in CD34+ [Gene ID=947] hematopoetic cells by expression of NUP98-HOXA9 fusion [Gene ID=4928 3205] off a retroviral vector at 8 days after transduction. www.broad.mit.e...
Broad PAPASPYRIDONOS_UNSTABLE_ATEROSCLEROTIC_PLAQUE_UP View Gene Set 1.948e-06 49 4.236e-05 110 Genes up-regulated in unstable ateroslerotic plaques compared to the stable ones. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 2.042e-06 869 4.4e-05 111 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad JAATINEN_HEMATOPOIETIC_STEM_CELL_DN View Gene Set 2.189e-06 215 4.655e-05 112 Genes up-regulated in CD133+ [Gene ID=8842] cells (hematopoietic stem cells HSC) compared to the CD133- cells. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_40_MCF10A View Gene Set 2.219e-06 33 4.655e-05 112 Genes whose expression peaked at 40 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad LINDSTEDT_DENDRITIC_CELL_MATURATION_A View Gene Set 2.217e-06 54 4.655e-05 112 Maturation of monocyte-derived dendritic cells (DC) in response to inflammatory stimuli: genes up-regulated only at 8 hr after the stimulation (cluster A). www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN View Gene Set 2.26e-06 317 4.7e-05 115 The postradiation tumor escape signature: genes down-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_DN View Gene Set 2.339e-06 83 4.823e-05 116 Genes down-regulated in invasive ductal carcinoma (IDC) relative to ductal carcinoma in situ (DCIS non-invasive). www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_CDC25_DN View Gene Set 2.511e-06 140 5.133e-05 117 Genes down-regulated in reverted NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845] which then reverted to normal cells upon stable over-expression of a dominant negative form of CDC25 [Gene ID=5923]) vs normal fibroblasts. www.broad.mit.e...
Broad CHEN_LVAD_SUPPORT_OF_FAILING_HEART_UP View Gene Set 2.554e-06 100 5.177e-05 118 Up-regulated genesin the left ventricle myocardium of patients with heart failure following implantation of LVAD (left ventricular assist device). www.broad.mit.e...
Broad WINTER_HYPOXIA_METAGENE View Gene Set 2.712e-06 216 5.451e-05 119 Genes regulated by hypoxia based on literature searches. www.broad.mit.e...
Broad MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_DN View Gene Set 2.845e-06 64 5.67e-05 120 Down-regulated 'cooperation response genes': responded synergystically to the combination of mutant TP53 [Gene ID=7157] and HRAS [Gene ID=3265] in YAMC cells (colon). www.broad.mit.e...
Broad RODRIGUES_DCC_TARGETS_DN View Gene Set 3.705e-06 121 7.324e-05 121 Genes down-regulated in HCT8/S1 cells (colon cancer) which normally lack DCC [Gene ID=9423] compared to those stably expressing wild type DCC off a plasmid vector. www.broad.mit.e...
Broad THUM_SYSTOLIC_HEART_FAILURE_UP View Gene Set 4.147e-06 393 8.131e-05 122 Genes up-regulated in samples with systolic heart failure compared to normal hearts. www.broad.mit.e...
Broad SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP View Gene Set 4.293e-06 339 8.349e-05 123 Genes up-regulated in invasive ductal carcinoma (IDC) relative to ductal carcinoma in situ (DCIS non-invasive). www.broad.mit.e...
Broad MAHAJAN_RESPONSE_TO_IL1A_UP View Gene Set 4.604e-06 67 8.882e-05 124 Genes up-regulated in corneal fibroblasts after treatment with IL1A [Gene ID=3552]. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_DN View Gene Set 4.788e-06 87 9.09e-05 125 Genes down-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_60_HELA View Gene Set 4.76e-06 43 9.09e-05 125 Genes whose expression peaked at 60 min after stimulation of HeLa cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad MCLACHLAN_DENTAL_CARIES_UP View Gene Set 4.902e-06 207 9.232e-05 127 Genes up-regulated in pulpal tissue extracted from carious teeth. www.broad.mit.e...
Broad BASSO_CD40_SIGNALING_UP View Gene Set 5.335e-06 100 9.97e-05 128 Gene changed by CD40 [Gene ID=958] signaling in Ramos cells (EBV negative Burkitt lymphoma). www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_UP View Gene Set 5.618e-06 78 0.0001042 129 Genes up-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and down-regulated by RNAi knockdown of TFRC [Gene ID=7037]. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_DN View Gene Set 5.739e-06 223 0.0001056 130 Genes down-regulated in peripheral blood monocytes by HGF [Gene ID=3082]. www.broad.mit.e...
Broad WAMUNYOKOLI_OVARIAN_CANCER_GRADES_1_2_UP View Gene Set 6.085e-06 131 0.0001097 131 Genes up-regulated in mucinous ovarian carcinoma tumors of grades 1 and 2 compared to the normal ovarian survace epithelium tissue. www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_UP View Gene Set 6.1e-06 132 0.0001097 131 The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad BILD_HRAS_ONCOGENIC_SIGNATURE View Gene Set 6.087e-06 248 0.0001097 131 Genes selected in supervised analyses to discriminate cells expressing activated HRAS [Gene ID=3265] oncogene from control cells expressing GFP. www.broad.mit.e...
Broad FOSTER_INFLAMMATORY_RESPONSE_LPS_DN View Gene Set 6.363e-06 369 0.0001136 134 Genes down-regulated by bacterial lipopolysaccharide (LPS) in non-tolerizeable (NT class) macrophages compared to the ???tolerizeable??? (T class) ones. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_DN View Gene Set 7.117e-06 356 0.0001261 135 Genes down-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad LENAOUR_DENDRITIC_CELL_MATURATION_UP View Gene Set 7.868e-06 92 0.0001384 136 Genes up-regulated during in vitro maturation of CD14+ [Gene ID=929] monocytes (day 0) into immature (day 7) and mature dendritic cells (day 14). www.broad.mit.e...
Broad ROZANOV_MMP14_TARGETS_UP View Gene Set 7.928e-06 260 0.0001384 137 Genes up-regulated in HT1080 cells (fibrosarcoma) over-expressing MMP14 [Gene ID=4323] compared to those with knockdown of the gene by RNAi. www.broad.mit.e...
Broad BROCKE_APOPTOSIS_REVERSED_BY_IL6 View Gene Set 8.09e-06 140 0.0001402 138 Genes changed in INA-6 cells (multiple myeloma MM) by re-addition of IL6 [Gene ID=3569] after its initial withdrawal for 12h. www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G2 View Gene Set 8.172e-06 21 0.0001406 139 Cluster G2: genes increasingly up-regulated in NHEK cells (normal keratinocyte) and reaching maximum levels at 12 h and 24 h after UV-B irradiation. www.broad.mit.e...
Broad TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP View Gene Set 8.447e-06 186 0.0001443 140 Genes up-regulated in CD34+ [Gene ID=947] hematopoetic cells by expression of NUP98-HOXA9 fusion [Gene ID=4928 3205] off a retroviral vector at 10 days after transduction. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 8.841e-06 436 0.00015 141 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad DOANE_RESPONSE_TO_ANDROGEN_UP View Gene Set 9.597e-06 175 0.0001594 142 Genes up-regulated in MDA-MB-453 cells (class A ER(-) [Gene ID=2099] breast cancer) after exposure to the androgen R1881 [PubChem=13766]. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_UP View Gene Set 9.579e-06 16 0.0001594 142 Genes up-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_UP View Gene Set 9.581e-06 162 0.0001594 142 Genes up-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_0 View Gene Set 9.792e-06 69 0.0001615 145 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 0. www.broad.mit.e...
Broad MCCLUNG_CREB1_TARGETS_UP View Gene Set 1.045e-05 89 0.0001712 146 Genes up-regulated in the nucleus accumbens (a major reward center in the brain) 8 weeks after induction of CREB1 [Gene ID=1385] expression in a transgenic Tet-Off system. www.broad.mit.e...
Broad CAIRO_LIVER_DEVELOPMENT_DN View Gene Set 1.075e-05 208 0.0001749 147 Genes down-regulated at early fetal liver stage (embryonic days E11.5 - E12.5) compared to the late fetal liver stage (embryonic days E14.5 - E16.5). www.broad.mit.e...
Broad RODWELL_AGING_KIDNEY_NO_BLOOD_DN View Gene Set 1.099e-05 119 0.0001776 148 Genes whose expression decreases with age in normal kidney excluding those with higher expression in blood. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_30MIN_UP View Gene Set 1.306e-05 53 0.0002097 149 Genes up-regulated in primary fibroblast cell culture at 30 min time point after infection with HCMV (AD169 strain). www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_DN View Gene Set 1.39e-05 346 0.0002216 150 Down-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad SEITZ_NEOPLASTIC_TRANSFORMATION_BY_8P_DELETION_UP View Gene Set 1.458e-05 72 0.000231 151 Genes up-regulated in CT60/4 cells (breast cancer reverted to normal by transfer of chromosome 8p region) vs parental MDA-MB-231 cells (deleted chromosome 8p). www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_DN View Gene Set 1.543e-05 238 0.0002428 152 Genes down-regulated in peripheral blood mononucleocytes by HGF [Gene ID=3082] compared to those regulated by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_240_MCF10A View Gene Set 1.583e-05 57 0.0002474 153 Genes whose expression peaked at 240 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad DELYS_THYROID_CANCER_DN View Gene Set 1.596e-05 213 0.0002479 154 Genes down-regulated in papillary thyroid carcinoma (PTC) compared to normal tissue. www.broad.mit.e...
Broad DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN View Gene Set 1.641e-05 303 0.0002516 155 Genes down-regulated in T-PLL cells (T-cell prolymphocytic leukemia) bearing the inv(14)/t(14:14) chromosomal aberration. www.broad.mit.e...
Broad KIM_WT1_TARGETS_UP View Gene Set 1.633e-05 207 0.0002516 155 Genes up-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_UP View Gene Set 1.713e-05 165 0.000261 157 Genes up-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad SEKI_INFLAMMATORY_RESPONSE_LPS_UP View Gene Set 1.804e-05 75 0.0002731 158 Genes up-regulated in hepatic stellar cells after stimulation with bacterial lipopolysacharide (LPS). www.broad.mit.e...
Broad ONDER_CDH1_SIGNALING_VIA_CTNNB1 View Gene Set 1.819e-05 81 0.0002736 159 Genes changed in HMLE cells (mmortalized nontransformed mammary epithelium) after RNAi knockdown of both CDH1 [Gene ID=999] and CTNNB1 [Gene ID=1499] compared to the knockdown of CDH1 alone. www.broad.mit.e...
Broad RODWELL_AGING_KIDNEY_DN View Gene Set 1.831e-05 106 0.0002738 160 Genes whose expression decreases with age in normal kidney. www.broad.mit.e...
Broad BOYLAN_MULTIPLE_MYELOMA_C_D_DN View Gene Set 2.018e-05 232 0.0002998 161 Genes down-regulated both in group C and D of tumors arising from overexpression of BCL2L1 and MYC [Gene ID=598 4609] in plasma cells. www.broad.mit.e...
Broad DUNNE_TARGETS_OF_AML1_MTG8_FUSION_UP View Gene Set 2.286e-05 46 0.0003376 162 Genes up-regulated in Kasumi-1 cells (acute myeloid leukaemia (AML) with the t(8;21) translocation) after knockdown of the AML1 MTG8 fusion [Gene ID=861 862] by RNAi. www.broad.mit.e...
Broad JIANG_TIP30_TARGETS_UP View Gene Set 2.467e-05 43 0.000362 163 Up-regulated genes in HepG2 cells (liver cancer) overexpressing an oncogenic variant of tumor suppressor TIP30 [Gene ID=10553] compared to its wild type form. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_UP View Gene Set 2.542e-05 155 0.0003707 164 Genes up-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad KHETCHOUMIAN_TRIM24_TARGETS_UP View Gene Set 2.595e-05 45 0.0003762 165 Retinoic acid-responsive genes up-regulated in hepatocellular carcinoma (HCC) samples of TRIM24 [Gene ID=8805] knockout mice. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_UP View Gene Set 2.726e-05 131 0.0003928 166 Genes up-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP View Gene Set 2.806e-05 539 0.0004019 167 Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad DIRMEIER_LMP1_RESPONSE_EARLY View Gene Set 2.942e-05 54 0.0004189 168 Clusters 1 and 2: genes up-regulated in B2264-19/3 cells (primary B lymphocytes) within 30-60 min after activation of LMP1 (an oncogene encoded by Epstein???Barr virus EBV). www.broad.mit.e...
Broad HOEBEKE_LYMPHOID_STEM_CELL_DN View Gene Set 2.999e-05 83 0.0004245 169 Genes down-regulated in the common lymphoid progenitor (CLP defined as CD34+CD38-CD7+ [Gene ID=947 952 924]) compared to a multipotent cord blood cell (defined as CD34+CD38+CD7-). www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_CTNNB1_UP View Gene Set 3.147e-05 138 0.0004427 170 Top 200 marker genes up-regulated in the 'CTNNB1' subclass of hepatocellular carcinoma (HCC); characterized by activated CTNNB1 [Gene ID=1499]. www.broad.mit.e...
Broad LEE_TARGETS_OF_PTCH1_AND_SUFU_UP View Gene Set 3.287e-05 77 0.0004598 171 Genes up-regulated in medulloblastoma tumors from animals with inactivating mutations of one copy of PTCH1 or SUFU [Gene ID=5727 51684] in conjunction with TP53 [Gene ID=7157] loss. www.broad.mit.e...
Broad PARENT_MTOR_SIGNALING_UP View Gene Set 3.541e-05 541 0.0004915 172 Genes up-regulated in HepaRG cells (liver cancer) expressing constituvely active form of MTOR [Gene ID=2475]. www.broad.mit.e...
Broad KERLEY_RESPONSE_TO_CISPLATIN_UP View Gene Set 3.555e-05 38 0.0004915 172 Genes genes up-regulated in NT2/D1 cells (embryonal carcinoma) in response to treatment with cisplatin [PubChem=2767]. www.broad.mit.e...
Broad SENESE_HDAC1_AND_HDAC2_TARGETS_UP View Gene Set 4.102e-05 224 0.000564 174 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of both HDAC1 and HDAC2 [Gene ID=3065 3066] by RNAi. www.broad.mit.e...
Broad HELLER_SILENCED_BY_METHYLATION_UP View Gene Set 4.182e-05 247 0.0005716 175 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines treated with the DNA hypomethylating agent decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad SMID_BREAST_CANCER_ERBB2_UP View Gene Set 4.267e-05 138 0.0005782 176 Genes up-regulated in the erbb2 subype of breast cancer samples characterized by higher expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_4HR_UP View Gene Set 4.279e-05 53 0.0005782 176 Genes up-regulated in primary fibroblast cell culture point after infection with HCMV (AD169 strain) at 4 h time point that were not up-regulated at the previous time point 2 h. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_UP View Gene Set 4.372e-05 158 0.0005876 178 Genes up-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN View Gene Set 4.435e-05 133 0.0005927 179 Genes down-regulated in transformed NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845]) vs normal cells. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_UP View Gene Set 4.661e-05 114 0.000616 180 Genes up-regulated in basal-like breast cancer cell lines as compared to the mesenchymal-like ones. www.broad.mit.e...
Broad MURATA_VIRULENCE_OF_H_PILORI View Gene Set 4.642e-05 16 0.000616 180 Selected genes up-regulated in WT-A10 cells (gastric epithelium) expressing the H. pilori virulence gene CagA. www.broad.mit.e...
Broad ZHAN_V1_LATE_DIFFERENTIATION_GENES_UP View Gene Set 4.797e-05 31 0.0006305 182 The v1LDG set: most variable late differentiation genes (LDG) with similar expression patterns in tonsil plasma cells (TPC) and multiple myeloma (MM) samples. www.broad.mit.e...
Broad LI_CISPLATIN_RESISTANCE_UP View Gene Set 5.076e-05 26 0.0006635 183 Genes consistently up-regulated in ACRP cells (ovarian cancer resistant to cisplatin [PubChem=2767]) compared to the parental sensitive A2780 cells regardless of cisplatin exposure. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN View Gene Set 5.325e-05 732 0.0006923 184 Genes down-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad VERHAAK_AML_WITH_NPM1_MUTATED_DN View Gene Set 5.926e-05 241 0.0007662 185 Genes down-regulated in acute myeloid leukemia (AML) patients with mutated NPM1 [Gene ID=4869]. www.broad.mit.e...
Broad CERVERA_SDHB_TARGETS_2 View Gene Set 6.489e-05 109 0.0008345 186 Genes present but differentially expressed between Hep3B cells (hepatocellular carcinoma HCC) with RNAi knockdown of SDHB [Gene ID=6390] and control cells. www.broad.mit.e...
Broad ALONSO_METASTASIS_EMT_UP View Gene Set 6.552e-05 30 0.0008381 187 EMT (epithelial-mesenchymal transition) genes up-regulated genes in melanoma tumous that developed metastatic disease compared to primary melanoma that did not. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_UP View Gene Set 6.836e-05 202 0.0008651 188 Genes up-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 6.822e-05 171 0.0008651 188 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_DN View Gene Set 7.063e-05 205 0.0008892 190 Genes down-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 7.151e-05 368 0.0008956 191 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad HELLER_SILENCED_BY_METHYLATION_DN View Gene Set 7.318e-05 94 0.0009117 192 Genes down-regulated in at least one of three multiple myeloma (MM) cell lines treated with the DNA hypomethylating agent decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad HALMOS_CEBPA_TARGETS_UP View Gene Set 7.502e-05 42 0.0009298 193 Genes up-regulated in H358 cells (lung cancer) by inducible expression of CEBPA [Gene ID=1050] off plasmid vector. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_DN View Gene Set 7.802e-05 208 0.0009619 194 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad LEE_NEURAL_CREST_STEM_CELL_DN View Gene Set 7.885e-05 114 0.0009673 195 Genes down-regulated in the neural crest stem cells (NCS) defined as p75+/HNK1+ [Gene ID=4804 27087]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_DN View Gene Set 8.049e-05 47 0.0009773 196 Genes down-regulated in basal-like breast cancer cell lines as compared to the mesenchymal-like ones. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_7 View Gene Set 8.032e-05 20 0.0009773 196 Cluster 7: selected apocrine and luminal genes clustered together across breast cancer samples. www.broad.mit.e...
Broad NELSON_RESPONSE_TO_ANDROGEN_UP View Gene Set 8.429e-05 81 0.001018 198 Genes up-regulated in LNCaP cells (prostate cancer) in response to synthetic androgen R1881 [PubChem=13766]. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_48HR_UP View Gene Set 8.476e-05 175 0.001019 199 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 48 h time point that were not up-regulated at the previous time point 24 h. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_DN View Gene Set 8.749e-05 158 0.001046 200 Down-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_BIOPEPTIDES_PATHWAY View Gene Set 0.0002677 43 0.02904 1 Bioactive Peptide Induced Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_IL10_PATHWAY View Gene Set 0.0001753 17 0.02904 1 IL-10 Anti-inflammatory Signaling Pathway www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_LYSOSOME View Gene Set 4.657e-09 122 8.663e-07 1 Lysosome www.broad.mit.e...
Broad KEGG_STEROID_BIOSYNTHESIS View Gene Set 1.401e-06 17 0.0001303 2 Steroid biosynthesis www.broad.mit.e...
Broad KEGG_VIBRIO_CHOLERAE_INFECTION View Gene Set 9.537e-06 56 0.0005913 3 Vibrio cholerae infection www.broad.mit.e...
Broad KEGG_ENDOCYTOSIS View Gene Set 3.596e-05 183 0.001672 4 Endocytosis www.broad.mit.e...
Broad KEGG_ARGININE_AND_PROLINE_METABOLISM View Gene Set 0.0001018 54 0.003786 5 Arginine and proline metabolism www.broad.mit.e...
Broad KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION View Gene Set 0.00027 118 0.008371 6 Leukocyte transendothelial migration www.broad.mit.e...
Broad KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM View Gene Set 0.000401 76 0.009324 7 Phosphatidylinositol signaling system www.broad.mit.e...
Broad KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION View Gene Set 0.0003887 68 0.009324 7 Epithelial cell signaling in Helicobacter pylori infection www.broad.mit.e...
Broad KEGG_AXON_GUIDANCE View Gene Set 0.0004577 129 0.00946 9 Axon guidance www.broad.mit.e...
Broad KEGG_BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS View Gene Set 0.000735 22 0.01367 10 Biosynthesis of unsaturated fatty acids www.broad.mit.e...
Broad KEGG_PEROXISOME View Gene Set 0.0008218 78 0.0139 11 Peroxisome www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION View Gene Set 0.001335 44 0.01774 12 Valine leucine and isoleucine degradation www.broad.mit.e...
Broad KEGG_MAPK_SIGNALING_PATHWAY View Gene Set 0.001317 267 0.01774 12 MAPK signaling pathway www.broad.mit.e...
Broad KEGG_FC_EPSILON_RI_SIGNALING_PATHWAY View Gene Set 0.00116 79 0.01774 12 Fc epsilon RI signaling pathway www.broad.mit.e...
Broad KEGG_GLYCINE_SERINE_AND_THREONINE_METABOLISM View Gene Set 0.002351 31 0.02281 15 Glycine serine and threonine metabolism www.broad.mit.e...
Broad KEGG_GLUTATHIONE_METABOLISM View Gene Set 0.002563 50 0.02281 15 Glutathione metabolism www.broad.mit.e...
Broad KEGG_SPHINGOLIPID_METABOLISM View Gene Set 0.002575 40 0.02281 15 Sphingolipid metabolism www.broad.mit.e...
Broad KEGG_NITROGEN_METABOLISM View Gene Set 0.001906 23 0.02281 15 Nitrogen metabolism www.broad.mit.e...
Broad KEGG_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION View Gene Set 0.002512 267 0.02281 15 Cytokine-cytokine receptor interaction www.broad.mit.e...
Broad KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY View Gene Set 0.002302 137 0.02281 15 Natural killer cell mediated cytotoxicity www.broad.mit.e...
Broad KEGG_GNRH_SIGNALING_PATHWAY View Gene Set 0.002045 101 0.02281 15 GnRH signaling pathway www.broad.mit.e...
Broad KEGG_CELL_ADHESION_MOLECULES_CAMS View Gene Set 0.002708 134 0.02289 22 Cell adhesion molecules (CAMs) www.broad.mit.e...
Broad KEGG_GLYCOSAMINOGLYCAN_BIOSYNTHESIS_HEPARAN_SULFATE View Gene Set 0.004821 26 0.03899 23 Glycosaminoglycan biosynthesis - heparan sulfate www.broad.mit.e...
Broad KEGG_CHEMOKINE_SIGNALING_PATHWAY View Gene Set 0.005431 190 0.04209 24 Chemokine signaling pathway www.broad.mit.e...
Broad KEGG_ALANINE_ASPARTATE_AND_GLUTAMATE_METABOLISM View Gene Set 0.005816 32 0.04327 25 Alanine aspartate and glutamate metabolism www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CHOLESTEROL_BIOSYNTHESIS View Gene Set 6.045e-07 21 0.00026 1 Genes involved in Cholesterol biosynthesis www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING View Gene Set 7.92e-05 61 0.01703 2 Genes involved in Clathrin derived vesicle budding www.broad.mit.e...
Broad REACTOME_STEROID_METABOLISM View Gene Set 0.0001516 62 0.02174 3 Genes involved in Steroid metabolism www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS View Gene Set 0.0003601 54 0.02932 4 Genes involved in Golgi Associated Vesicle Biogenesis www.broad.mit.e...
Broad REACTOME_MEMBRANE_TRAFFICKING View Gene Set 0.0004092 78 0.02932 4 Genes involved in Membrane Trafficking www.broad.mit.e...
Broad REACTOME_SLC_MEDIATED_TRANSMEMBRANE_TRANSPORT View Gene Set 0.0003626 169 0.02932 4 Genes involved in SLC-mediated transmembrane transport www.broad.mit.e...
Broad REACTOME_TRANSFORMATION_OF_LANOSTEROL_TO_CHOLESTEROL View Gene Set 0.0005186 10 0.03186 7 Genes involved in Transformation of lanosterol to cholesterol www.broad.mit.e...
Broad REACTOME_NEUROTRANSMITTER_RELEASE_CYCLE View Gene Set 0.0006516 28 0.03502 8 Genes involved in Neurotransmitter Release Cycle www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad TGGTGCT MIR-29A MIR-29B MIR-29C View Gene Set 0.0003728 436 0.02569 1 Targets of MicroRNA TGGTGCT MIR-29A MIR-29B MIR-29C www.broad.mit.e... MIR-29A... MIR-29B... MIR-29C...
Broad CAGTATT MIR-200B MIR-200C MIR-429 View Gene Set 0.0002062 386 0.02569 1 Targets of MicroRNA CAGTATT MIR-200B MIR-200C MIR-429 www.broad.mit.e... MIR-200B... MIR-200C... MIR-429...
Broad AAGCCAT MIR-135A MIR-135B View Gene Set 0.0004142 283 0.02569 1 Targets of MicroRNA AAGCCAT MIR-135A MIR-135B www.broad.mit.e... MIR-135A... MIR-135B...
Broad GTGCCTT MIR-506 View Gene Set 0.0005811 605 0.02569 1 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad CTATGCA MIR-153 View Gene Set 0.0005004 182 0.02569 1 Targets of MicroRNA CTATGCA MIR-153 www.broad.mit.e... MIR-153...
Broad TTGCCAA MIR-182 View Gene Set 0.0007915 274 0.02915 6 Targets of MicroRNA TTGCCAA MIR-182 www.broad.mit.e... MIR-182...
Broad ATACCTC MIR-202 View Gene Set 0.001413 150 0.04461 7 Targets of MicroRNA ATACCTC MIR-202 www.broad.mit.e... MIR-202...
Broad AACTGAC MIR-223 View Gene Set 0.001714 84 0.04735 8 Targets of MicroRNA AACTGAC MIR-223 www.broad.mit.e... MIR-223...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CAGGTG_V$E12_Q6 View Gene Set 2.26e-12 1818 1.39e-09 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGGTG which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad TGGAAA_V$NFAT_Q4_01 View Gene Set 1.011e-06 1403 0.000311 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGGAAA which matches annotation for NFAT<br> NFATC www.broad.mit.e...
Broad TGANTCA_V$AP1_C View Gene Set 2.101e-05 850 0.004308 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGANTCA which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad TTANTCA_UNKNOWN View Gene Set 4.045e-05 702 0.005463 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTANTCA. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCANCTGNY_V$MYOD_Q6 View Gene Set 4.441e-05 673 0.005463 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCANCTGNY which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$CEBPB_01 View Gene Set 7.656e-05 198 0.007835 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RNRTKDNGMAAKNN which matches annotation for CEBPB: CCAAT/enhancer binding protein (C/EBP) beta www.broad.mit.e...
Broad TGACAGNY_V$MEIS1_01 View Gene Set 8.918e-05 603 0.007835 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACAGNY which matches annotation for MEIS1: Meis1 myeloid ecotropic viral integration site 1 homolog (mouse) www.broad.mit.e...
Broad AACTTT_UNKNOWN View Gene Set 0.0001323 1437 0.008818 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AACTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CREB_Q2 View Gene Set 0.0001667 192 0.008818 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NSTGACGTAANN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad CTGCAGY_UNKNOWN View Gene Set 0.0001721 570 0.008818 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTGCAGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad GTGGGTGK_UNKNOWN View Gene Set 0.0001683 224 0.008818 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GTGGGTGK. Motif does not match any known transcription factor www.broad.mit.e...
Broad GATAAGR_V$GATA_C View Gene Set 0.0001624 232 0.008818 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATAAGR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AP1_C View Gene Set 0.0002396 222 0.01052 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGASTCAG which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$MEIS1_01 View Gene Set 0.0002307 173 0.01052 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTGACAGNNN which matches annotation for MEIS1: Meis1 myeloid ecotropic viral integration site 1 homolog (mouse) www.broad.mit.e...
Broad V$RORA1_01 View Gene Set 0.0004618 189 0.01893 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NWAWNNAGGTCAN which matches annotation for RORA: RAR-related orphan receptor A www.broad.mit.e...
Broad V$ISRE_01 View Gene Set 0.0005354 171 0.02046 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGTTTCWCTTTYCC which matches annotation for STAT1: signal transducer and activator of transcription 1 91kDa<br> STAT2: signal transducer and activator of transcription 2 113kDa www.broad.mit.e...
Broad V$CREB_Q4_01 View Gene Set 0.0005655 159 0.02046 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CNNTGACGTMA which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$ATF3_Q6 View Gene Set 0.0006185 193 0.02113 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CBCTGACGTCANCS which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$GATA_Q6 View Gene Set 0.0007457 159 0.02414 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGATARN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1) www.broad.mit.e...
Broad V$CREB_01 View Gene Set 0.0008423 198 0.0256 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACGTMA which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad CTTTGT_V$LEF1_Q2 View Gene Set 0.0008742 1458 0.0256 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGT which matches annotation for LEF1: lymphoid enhancer-binding factor 1 www.broad.mit.e...
Broad V$LMO2COM_02 View Gene Set 0.001092 194 0.03053 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NMGATANSG which matches annotation for LMO2: LIM domain only 2 (rhombotin-like 1) www.broad.mit.e...
Broad V$ATF_B View Gene Set 0.001249 147 0.03199 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NTGACGTCANYS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYOD_Q6_01 View Gene Set 0.001232 182 0.03199 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CNGNRNCAGGTGNNGNAN which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$CREB_Q4 View Gene Set 0.001444 188 0.03416 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NSTGACGTMANN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad TTGTTT_V$FOXO4_01 View Gene Set 0.001404 1507 0.03416 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGTTT which matches annotation for MLLT7: myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog Drosophila); translocated to 7 www.broad.mit.e...
Broad RTAAACA_V$FREAC2_01 View Gene Set 0.001734 697 0.03951 27 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RTAAACA which matches annotation for FOXF2: forkhead box F2 www.broad.mit.e...
Broad WGGAATGY_V$TEF1_Q6 View Gene Set 0.001935 281 0.04249 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGGAATGY which matches annotation for TEAD1: TEA domain family member 1 (SV40 transcriptional enhancer factor) www.broad.mit.e...
Broad CTTTAAR_UNKNOWN View Gene Set 0.002089 739 0.04374 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTTTAAR. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGACGTCA_V$ATF3_Q6 View Gene Set 0.002134 176 0.04374 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACGTCA which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$ATF1_Q6 View Gene Set 0.002349 186 0.04515 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CYYTGACGTCA which matches annotation for ATF1: activating transcription factor 1 www.broad.mit.e...
Broad TGAYRTCA_V$ATF3_Q6 View Gene Set 0.002294 405 0.04515 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAYRTCA which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$AREB6_02 View Gene Set 0.002511 189 0.0465 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WNWCACCTGWNN which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression) www.broad.mit.e...
Broad KRCTCNNNNMANAGC_UNKNOWN View Gene Set 0.002571 60 0.0465 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KRCTCNNNNMANAGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E12_Q6 View Gene Set 0.002733 191 0.04668 35 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RRCAGGTGNCV which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad TGGNNNNNNKCCAR_UNKNOWN View Gene Set 0.002698 314 0.04668 35 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGGNNNNNNKCCAR. Motif does not match any known transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GCM_MAPK10 View Gene Set 1.134e-05 75 0.004844 1 Neighborhood of MAPK10 www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 3.396e-05 39 0.006978 2 Neighborhood of SIRT2 www.broad.mit.e...
Broad GNF2_RAB3A View Gene Set 4.903e-05 34 0.006978 2 Neighborhood of RAB3A www.broad.mit.e...
Broad GNF2_MAPT View Gene Set 0.0002482 38 0.02576 4 Neighborhood of MAPT www.broad.mit.e...
Broad GNF2_TM4SF2 View Gene Set 0.0003016 23 0.02576 4 Neighborhood of TM4SF2 www.broad.mit.e...
Broad GCM_PTK2 View Gene Set 0.0006096 126 0.04339 6 Neighborhood of PTK2 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_2 View Gene Set 3.191e-15 373 8.6e-13 1 Genes in module_2 www.broad.mit.e...
Broad module_11 View Gene Set 3.788e-15 520 8.6e-13 1 Genes in module_11 www.broad.mit.e...
Broad module_5 View Gene Set 9.003e-15 420 1.363e-12 3 Genes in module_5 www.broad.mit.e...
Broad module_66 View Gene Set 1.757e-13 530 1.676e-11 4 Genes in module_66 www.broad.mit.e...
Broad module_100 View Gene Set 1.846e-13 523 1.676e-11 4 Genes in module_100 www.broad.mit.e...
Broad module_137 View Gene Set 4.117e-13 525 3.115e-11 6 Genes in module_137 www.broad.mit.e...
Broad module_6 View Gene Set 1.278e-12 403 7.255e-11 7 Genes in module_6 www.broad.mit.e...
Broad module_12 View Gene Set 1.133e-12 346 7.255e-11 7 Genes in module_12 www.broad.mit.e...
Broad module_64 View Gene Set 3.163e-09 506 1.596e-07 9 Genes in module_64 www.broad.mit.e...
Broad module_45 View Gene Set 4.069e-09 563 1.847e-07 10 Genes in module_45 www.broad.mit.e...
Broad module_88 View Gene Set 9.856e-09 812 4.068e-07 11 Genes in module_88 www.broad.mit.e...
Broad module_212 View Gene Set 1.608e-08 316 6.083e-07 12 Genes in module_212 www.broad.mit.e...
Broad module_1 View Gene Set 2.021e-08 355 7.059e-07 13 Genes in module_1 www.broad.mit.e...
Broad module_84 View Gene Set 2.632e-08 526 8.536e-07 14 Genes in module_84 www.broad.mit.e...
Broad module_55 View Gene Set 1.255e-07 807 3.798e-06 15 Genes in module_55 www.broad.mit.e...
Broad module_75 View Gene Set 3.397e-07 391 9.638e-06 16 Genes in module_75 www.broad.mit.e...
Broad module_44 View Gene Set 7.544e-07 319 2.015e-05 17 Genes in module_44 www.broad.mit.e...
Broad module_24 View Gene Set 1.095e-06 443 2.761e-05 18 Genes in module_24 www.broad.mit.e...
Broad module_19 View Gene Set 2.976e-06 306 7.112e-05 19 Genes in module_19 www.broad.mit.e...
Broad module_46 View Gene Set 4.808e-06 386 0.0001091 20 Genes in module_46 www.broad.mit.e...
Broad module_180 View Gene Set 6.295e-06 113 0.0001361 21 Genes in module_180 www.broad.mit.e...
Broad module_342 View Gene Set 6.825e-06 195 0.0001408 22 Genes in module_342 www.broad.mit.e...
Broad module_357 View Gene Set 1.061e-05 78 0.0002094 23 Genes in module_357 www.broad.mit.e...
Broad module_27 View Gene Set 1.128e-05 345 0.0002134 24 Genes in module_27 www.broad.mit.e...
Broad module_38 View Gene Set 1.456e-05 453 0.0002644 25 Genes in module_38 www.broad.mit.e...
Broad module_432 View Gene Set 2.271e-05 15 0.0003965 26 Genes in module_432 www.broad.mit.e...
Broad module_297 View Gene Set 3.769e-05 78 0.0006337 27 Genes in module_297 www.broad.mit.e...
Broad module_129 View Gene Set 5.414e-05 215 0.0008778 28 Genes in module_129 www.broad.mit.e...
Broad module_92 View Gene Set 5.98e-05 146 0.000905 29 Genes in module_92 www.broad.mit.e...
Broad module_154 View Gene Set 5.867e-05 73 0.000905 29 Genes in module_154 www.broad.mit.e...
Broad module_249 View Gene Set 0.0001424 21 0.002086 31 Genes in module_249 www.broad.mit.e...
Broad module_116 View Gene Set 0.0001897 29 0.002692 32 Genes in module_116 www.broad.mit.e...
Broad module_33 View Gene Set 0.0002031 369 0.002795 33 Genes in module_33 www.broad.mit.e...
Broad module_220 View Gene Set 0.0002353 328 0.003142 34 Genes in module_220 www.broad.mit.e...
Broad module_112 View Gene Set 0.0002634 255 0.003417 35 Genes in module_112 www.broad.mit.e...
Broad module_23 View Gene Set 0.0002912 552 0.003673 36 Genes in module_23 www.broad.mit.e...
Broad module_139 View Gene Set 0.0005893 74 0.00723 37 Genes in module_139 www.broad.mit.e...
Broad module_60 View Gene Set 0.0006945 403 0.008084 38 Genes in module_60 www.broad.mit.e...
Broad module_235 View Gene Set 0.0006868 81 0.008084 38 Genes in module_235 www.broad.mit.e...
Broad module_94 View Gene Set 0.0008437 362 0.009396 40 Genes in module_94 www.broad.mit.e...
Broad module_117 View Gene Set 0.0008486 699 0.009396 40 Genes in module_117 www.broad.mit.e...
Broad module_310 View Gene Set 0.0009369 21 0.01013 42 Genes in module_310 www.broad.mit.e...
Broad module_223 View Gene Set 0.001081 140 0.01141 43 Genes in module_223 www.broad.mit.e...
Broad module_144 View Gene Set 0.001207 8 0.01245 44 Genes in module_144 www.broad.mit.e...
Broad module_213 View Gene Set 0.001307 77 0.01318 45 Genes in module_213 www.broad.mit.e...
Broad module_259 View Gene Set 0.001362 46 0.01327 46 Genes in module_259 www.broad.mit.e...
Broad module_440 View Gene Set 0.001374 19 0.01327 46 Genes in module_440 www.broad.mit.e...
Broad module_176 View Gene Set 0.001436 225 0.01358 48 Genes in module_176 www.broad.mit.e...
Broad module_248 View Gene Set 0.001515 126 0.01398 49 Genes in module_248 www.broad.mit.e...
Broad module_456 View Gene Set 0.00154 108 0.01398 49 Genes in module_456 www.broad.mit.e...
Broad module_40 View Gene Set 0.001695 81 0.0148 51 Genes in module_40 www.broad.mit.e...
Broad module_93 View Gene Set 0.001681 180 0.0148 51 Genes in module_93 www.broad.mit.e...
Broad module_63 View Gene Set 0.001729 210 0.01481 53 Genes in module_63 www.broad.mit.e...
Broad module_375 View Gene Set 0.002327 84 0.01956 54 Genes in module_375 www.broad.mit.e...
Broad module_408 View Gene Set 0.002409 18 0.01988 55 Genes in module_408 www.broad.mit.e...
Broad module_324 View Gene Set 0.00246 131 0.01994 56 Genes in module_324 www.broad.mit.e...
Broad module_86 View Gene Set 0.002674 43 0.0213 57 Genes in module_86 www.broad.mit.e...
Broad module_530 View Gene Set 0.002753 16 0.02155 58 Genes in module_530 www.broad.mit.e...
Broad module_199 View Gene Set 0.002908 57 0.02237 59 Genes in module_199 www.broad.mit.e...
Broad module_289 View Gene Set 0.003104 118 0.02349 60 Genes in module_289 www.broad.mit.e...
Broad module_169 View Gene Set 0.003834 95 0.02853 61 Genes in module_169 www.broad.mit.e...
Broad module_119 View Gene Set 0.004237 135 0.03102 62 Genes in module_119 www.broad.mit.e...
Broad module_85 View Gene Set 0.004426 51 0.03189 63 Genes in module_85 www.broad.mit.e...
Broad module_87 View Gene Set 0.004648 44 0.03298 64 Genes in module_87 www.broad.mit.e...
Broad module_132 View Gene Set 0.004882 13 0.0338 65 Genes in module_132 www.broad.mit.e...
Broad module_377 View Gene Set 0.004914 10 0.0338 65 Genes in module_377 www.broad.mit.e...
Broad module_101 View Gene Set 0.005354 10 0.0362 67 Genes in module_101 www.broad.mit.e...
Broad module_346 View Gene Set 0.005545 17 0.0362 67 Genes in module_346 www.broad.mit.e...
Broad module_358 View Gene Set 0.005481 72 0.0362 67 Genes in module_358 www.broad.mit.e...
Broad module_492 View Gene Set 0.005582 17 0.0362 67 Genes in module_492 www.broad.mit.e...
Broad module_488 View Gene Set 0.005803 28 0.03659 71 Genes in module_488 www.broad.mit.e...
Broad module_562 View Gene Set 0.005755 21 0.03659 71 Genes in module_562 www.broad.mit.e...
Broad module_122 View Gene Set 0.006072 138 0.03776 73 Genes in module_122 www.broad.mit.e...
Broad module_343 View Gene Set 0.006422 25 0.0394 74 Genes in module_343 www.broad.mit.e...
Broad module_418 View Gene Set 0.007142 56 0.04323 75 Genes in module_418 www.broad.mit.e...
Broad module_76 View Gene Set 0.007736 79 0.04553 76 Genes in module_76 www.broad.mit.e...
Broad module_211 View Gene Set 0.007822 11 0.04553 76 Genes in module_211 www.broad.mit.e...
Broad module_285 View Gene Set 0.007808 44 0.04553 76 Genes in module_285 www.broad.mit.e...
Broad module_274 View Gene Set 0.007986 82 0.04589 79 Genes in module_274 www.broad.mit.e...
Broad module_563 View Gene Set 0.008186 15 0.04645 80 Genes in module_563 www.broad.mit.e...
Broad module_573 View Gene Set 0.008515 24 0.04773 81 Genes in module_573 www.broad.mit.e...
Broad module_121 View Gene Set 0.008818 98 0.04882 82 Genes in module_121 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CELLULAR_CARBOHYDRATE_METABOLIC_PROCESS View Gene Set 2.622e-06 122 0.002163 1 Genes annotated by the GO term GO:0044262. The chemical reactions and pathways involving carbohydrates any of a group of organic compounds based of the general formula Cx(H2O)y as carried out by individual cells. www.broad.mit.e...
Broad SIGNAL_TRANSDUCTION View Gene Set 5.261e-05 1597 0.0217 2 Genes annotated by the GO term GO:0007165. The cascade of processes by which a signal interacts with a receptor causing a change in the level or activity of a second messenger or other downstream target and ultimately effecting a change in the functioning of the cell. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad INTRINSIC_TO_MEMBRANE View Gene Set 1.158e-12 1319 1.782e-10 1 Genes annotated by the GO term GO:0031224. Located in a membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad INTEGRAL_TO_MEMBRANE View Gene Set 1.53e-12 1301 1.782e-10 1 Genes annotated by the GO term GO:0016021. Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein indicates that all or part of the peptide sequence is embedded in the membrane. www.broad.mit.e...
Broad MEMBRANE View Gene Set 9.444e-12 1939 7.335e-10 3 Genes annotated by the GO term GO:0016020. Double layer of lipid molecules that encloses all cells and in eukaryotes many organelles; may be a single or double lipid bilayer; also includes associated proteins. www.broad.mit.e...
Broad PLASMA_MEMBRANE View Gene Set 2.119e-11 1392 1.234e-09 4 Genes annotated by the GO term GO:0005886. The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. www.broad.mit.e...
Broad MEMBRANE_PART View Gene Set 2.868e-11 1632 1.336e-09 5 Genes annotated by the GO term GO:0044425. Any constituent part of a membrane a double layer of lipid molecules that encloses all cells and in eukaryotes many organelles; may be a single or double lipid bilayer; also includes associated proteins. www.broad.mit.e...
Broad INTRINSIC_TO_PLASMA_MEMBRANE View Gene Set 1.988e-10 978 7.72e-09 6 Genes annotated by the GO term GO:0031226. Located in the plasma membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad INTEGRAL_TO_PLASMA_MEMBRANE View Gene Set 4.307e-10 964 1.41e-08 7 Genes annotated by the GO term GO:0005887. Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad PLASMA_MEMBRANE_PART View Gene Set 4.841e-10 1142 1.41e-08 7 Genes annotated by the GO term GO:0044459. Any constituent part of the plasma membrane the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. www.broad.mit.e...
Broad CELL_FRACTION View Gene Set 2.287e-05 484 0.000592 9 Genes annotated by the GO term GO:0000267. A generic term for parts of cells prepared by disruptive biochemical techniques. www.broad.mit.e...
Broad MEMBRANE_FRACTION View Gene Set 5.235e-05 333 0.00122 10 Genes annotated by the GO term GO:0005624. That fraction of cells prepared by disruptive biochemical methods that includes the plasma and other membranes. www.broad.mit.e...
Broad LYSOSOMAL_MEMBRANE View Gene Set 0.0001111 10 0.002354 11 Genes annotated by the GO term GO:0005765. The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. www.broad.mit.e...
Broad VACUOLAR_PART View Gene Set 0.0001891 13 0.003673 12 Genes annotated by the GO term GO:0044437. Any constituent part of a vacuole a closed structure found only in eukaryotic cells that is completely surrounded by unit membrane and contains liquid material. www.broad.mit.e...
Broad VACUOLAR_MEMBRANE View Gene Set 0.000256 11 0.004588 13 Genes annotated by the GO term GO:0005774. The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. www.broad.mit.e...
Broad VACUOLE View Gene Set 0.0005741 68 0.009555 14 Genes annotated by the GO term GO:0005773. A closed structure found only in eukaryotic cells that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products as a degradative compartment as a cost-effective way of increasing cell size and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 0.0009767 2054 0.01422 15 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad ACTIN_CYTOSKELETON View Gene Set 0.0009418 127 0.01422 15 Genes annotated by the GO term GO:0015629. The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. www.broad.mit.e...
Broad CYTOSOL View Gene Set 0.001497 203 0.02052 17 Genes annotated by the GO term GO:0005829. That part of the cytoplasm that does not contain membranous or particulate subcellular components. www.broad.mit.e...
Broad INTEGRAL_TO_GOLGI_MEMBRANE View Gene Set 0.002015 10 0.02608 18 Genes annotated by the GO term GO:0030173. Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 0.002797 1350 0.0343 19 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RECEPTOR_ACTIVITY View Gene Set 3.685e-06 572 0.001459 1 Genes annotated by the GO term GO:0004872. Combining with an extracellular or intracellular messenger to initiate a change in cell activity. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY View Gene Set 8.382e-06 280 0.00166 2 Genes annotated by the GO term GO:0016491. Catalysis of an oxidation-reduction (redox) reaction a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized while the other acts as hydrogen or electron acceptor and becomes reduced. www.broad.mit.e...
Broad PHOSPHOTRANSFERASE_ACTIVITY_ALCOHOL_GROUP_AS_ACCEPTOR View Gene Set 0.0001251 326 0.01014 3 Genes annotated by the GO term GO:0016773. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). www.broad.mit.e...
Broad KINASE_ACTIVITY View Gene Set 0.0001747 359 0.01014 3 Genes annotated by the GO term GO:0016301. Catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad TRANSMEMBRANE_RECEPTOR_ACTIVITY View Gene Set 0.0001793 411 0.01014 3 Genes annotated by the GO term GO:0004888. Combining with an extracellular or intracellular messenger to initiate a change in cell activity and spanning to the membrane of either the cell or an organelle. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS View Gene Set 0.0001622 23 0.01014 3 Genes annotated by the GO term GO:0016627. Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS View Gene Set 8.135e-05 414 0.01014 3 Genes annotated by the GO term GO:0016772. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad PROTEIN_KINASE_ACTIVITY View Gene Set 0.0003212 278 0.0159 8 Genes annotated by the GO term GO:0004672. Catalysis of the phosphorylation of an amino acid residue in a protein usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. www.broad.mit.e...
Broad ACETYLGLUCOSAMINYLTRANSFERASE_ACTIVITY View Gene Set 0.0005811 16 0.02557 9 Genes annotated by the GO term GO:0008375. Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. www.broad.mit.e...
Broad TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0007488 371 0.02965 10 Genes annotated by the GO term GO:0022857. Catalysis of the transfer of a substance from one side of a membrane to the other. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS View Gene Set 0.001234 63 0.04442 11 Genes annotated by the GO term GO:0016614. Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 11836511 View Gene Set 4.235e-07 22 0.0002654 1 The vacuolar (H+)-ATPases--nature's most versatile proton pumps. www.ncbi.nlm.ni...
PMID 12788495 View Gene Set 4.235e-07 22 0.0002654 1 Proton translocation driven by ATP hydrolysis in V-ATPases. www.ncbi.nlm.ni...
PMID 14580332 View Gene Set 4.235e-07 22 0.0002654 1 Revised nomenclature for mammalian vacuolar-type H+ -ATPase subunit genes. www.ncbi.nlm.ni...
PMID 14597263 View Gene Set 4.235e-07 22 0.0002654 1 Neurotransmitter release: the dark side of the vacuolar-H+ATPase. www.ncbi.nlm.ni...
PMID 9442887 View Gene Set 8.008e-07 19 0.0004015 5 Structure function and regulation of the vacuolar (H+)-ATPase. www.ncbi.nlm.ni...
PMID 10221984 View Gene Set 2.814e-06 18 0.0007056 6 Vacuolar and plasma membrane proton-adenosinetriphosphatases. www.ncbi.nlm.ni...
PMID 10224039 View Gene Set 2.814e-06 18 0.0007056 6 Structure and properties of the vacuolar (H+)-ATPases. www.ncbi.nlm.ni...
PMID 10340843 View Gene Set 2.814e-06 18 0.0007056 6 Introduction: V-ATPases 1992-1998. www.ncbi.nlm.ni...
PMID 10440860 View Gene Set 2.814e-06 18 0.0007056 6 Animal plasma membrane energization by proton-motive V-ATPases. www.ncbi.nlm.ni...
PMID 9210392 View Gene Set 2.814e-06 18 0.0007056 6 The vacuolar H+-ATPase: a universal proton pump of eukaryotes. www.ncbi.nlm.ni...
PMID 9446795 View Gene Set 3.04e-05 21 0.006928 11 Extracellular HIV-1 Tat protein induces a rapid and selective activation of protein kinase C (PKC)-alpha and -epsilon and -zeta isoforms in PC12 cells. www.ncbi.nlm.ni...
PMID 20452482 View Gene Set 5.127e-05 188 0.01071 12 Identification of fetal and maternal single nucleotide polymorphisms in candidate genes that predispose to spontaneous preterm labor with intact membranes. www.ncbi.nlm.ni...
PMID 18660489 View Gene Set 6.054e-05 250 0.01167 13 Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations. www.ncbi.nlm.ni...
PMID 11919157 View Gene Set 8.468e-05 12 0.01249 14 HIV-1 Tat protein induces interleukin-10 in human peripheral blood monocytes: involvement of protein kinase C-betaII and -delta. www.ncbi.nlm.ni...
PMID 20237496 View Gene Set 7.404e-05 828 0.01249 14 New genetic associations detected in a host response study to hepatitis B vaccine. www.ncbi.nlm.ni...
PMID 2182321 View Gene Set 7.995e-05 11 0.01249 14 Trans-activation of HIV-1 LTR-directed gene expression by tat requires protein kinase C. www.ncbi.nlm.ni...
PMID 8914829 View Gene Set 7.995e-05 11 0.01249 14 In vitro phosphorylation of human immunodeficiency virus type 1 Tat protein by protein kinase C: evidence for the phosphorylation of amino acid residue serine-46. www.ncbi.nlm.ni...
PMID 11154208 View Gene Set 0.0001154 22 0.01473 18 HIV-1 Tat promotes monocyte chemoattractant protein-1 secretion followed by transmigration of monocytes. www.ncbi.nlm.ni...
PMID 11504923 View Gene Set 0.0001172 15 0.01473 18 HIV envelope gp120 activates human arterial smooth muscle cells. www.ncbi.nlm.ni...
PMID 19948975 View Gene Set 0.0001175 229 0.01473 18 Integrative predictive model of coronary artery calcification in atherosclerosis. www.ncbi.nlm.ni...
PMID 10843712 View Gene Set 0.0001384 25 0.01652 21 Release of calcium from inositol 1 4 5-trisphosphate receptor-regulated stores by HIV-1 Tat regulates TNF-alpha production in human macrophages. www.ncbi.nlm.ni...
PMID 12408966 View Gene Set 0.0001727 76 0.01968 22 The human and mouse replication-dependent histone genes. www.ncbi.nlm.ni...
PMID 12975309 View Gene Set 0.0002985 1000 0.03118 23 The secreted protein discovery initiative (SPDI) a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. www.ncbi.nlm.ni...
PMID 9439656 View Gene Set 0.0002881 55 0.03118 23 The human histone gene cluster at the D6S105 locus. www.ncbi.nlm.ni...
PMID 10491200 View Gene Set 0.0003517 10 0.03526 25 Effect of serine and tyrosine phosphorylation on retroviral proteinase substrates. www.ncbi.nlm.ni...
PMID 2139676 View Gene Set 0.0003669 10 0.03538 26 Inhibition of protein kinase C and anti-CD3-induced Ca2+ influx in Jurkat T cells by a synthetic peptide with sequence identity to HIV-1 gp41. www.ncbi.nlm.ni...
PMID 19598235 View Gene Set 0.000455 67 0.04225 27 Genes related to sex steroids neural growth and social-emotional behavior are associated with autistic traits empathy and Asperger syndrome. www.ncbi.nlm.ni...
PMID 19148283 View Gene Set 0.0004724 19 0.0423 28 Genetic differences between the determinants of lipid profile phenotypes in African and European Americans: the Jackson Heart Study. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50002 View Gene Set 3.885e-05 212 0.02855 1 SH3 expasy.org/pros...
Null PS50004 View Gene Set 0.000162 115 0.04236 2 C2 expasy.org/pros...
Null PS50011 View Gene Set 0.0002305 493 0.04236 2 PROTEIN_KINASE_DOM expasy.org/pros...
Null PS50192 View Gene Set 0.0001878 26 0.04236 2 T_SNARE expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:3.6.3.14 View Gene Set 8.534e-05 45 0.01348 1 H(+)-transporting two-sector ATPase expasy.org/enzy...
Null EC:2.7.11.13 View Gene Set 0.0003004 9 0.02373 2 Protein kinase C expasy.org/enzy...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EGFR1 View Gene Set 0.0005882 137 0.005882 1 CELL_MAP - EGFR1 gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null cholesterol biosynthesis II (via 24 25-dihydrolanosterol) View Gene Set 1.004e-05 13 0.0006528 1 HUMANCYC - cholesterol biosynthesis II (via 24 25-dihydrolanosterol) gene set www.pathwaycomm... 25-dihydrolanos...
Null cholesterol biosynthesis I View Gene Set 1.004e-05 13 0.0006528 1 HUMANCYC - cholesterol biosynthesis I gene set www.pathwaycomm...
Null cholesterol biosynthesis III (via desmosterol) View Gene Set 1.004e-05 13 0.0006528 1 HUMANCYC - cholesterol biosynthesis III (via desmosterol) gene set www.pathwaycomm...
Null superpathway of cholesterol biosynthesis View Gene Set 5.643e-06 25 0.0006528 1 HUMANCYC - superpathway of cholesterol biosynthesis gene set www.pathwaycomm...
Null arginine biosynthesis IV View Gene Set 0.0005411 6 0.02067 5 HUMANCYC - arginine biosynthesis IV gene set www.pathwaycomm...
Null citrulline biosynthesis View Gene Set 0.0004977 8 0.02067 5 HUMANCYC - citrulline biosynthesis gene set www.pathwaycomm...
Null fatty acid beta-oxidation I View Gene Set 0.0005564 19 0.02067 5 HUMANCYC - fatty acid beta-oxidation I gene set www.pathwaycomm...
Null UDP-N-acetyl-D-glucosamine biosynthesis II View Gene Set 0.001322 5 0.04297 8 HUMANCYC - UDP-N-acetyl-D-glucosamine biosynthesis II gene set www.pathwaycomm...
Null 3-phosphoinositide biosynthesis View Gene Set 0.001502 26 0.04338 9 HUMANCYC - 3-phosphoinositide biosynthesis gene set www.pathwaycomm...
Null gamma-linolenate biosynthesis II (animals) View Gene Set 0.001904 7 0.04886 10 HUMANCYC - gamma-linolenate biosynthesis II (animals) gene set www.pathwaycomm...
Null glutathione-mediated detoxification View Gene Set 0.002067 19 0.04886 10 HUMANCYC - glutathione-mediated detoxification gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Endothelins View Gene Set 8.663e-06 439 0.001611 1 NCI_NATURE - Endothelins gene set www.pathwaycomm...
Null Plasma membrane estrogen receptor signaling View Gene Set 0.000157 297 0.002854 2 NCI_NATURE - Plasma membrane estrogen receptor signaling gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 0.0001594 812 0.002854 2 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null Insulin Pathway View Gene Set 0.0001995 263 0.002854 2 NCI_NATURE - Insulin Pathway gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 0.0001594 812 0.002854 2 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null Arf6 signaling events View Gene Set 0.0001995 263 0.002854 2 NCI_NATURE - Arf6 signaling events gene set www.pathwaycomm...
Null mTOR signaling pathway View Gene Set 0.0001532 343 0.002854 2 NCI_NATURE - mTOR signaling pathway gene set www.pathwaycomm...
Null Arf6 trafficking events View Gene Set 0.0001995 263 0.002854 2 NCI_NATURE - Arf6 trafficking events gene set www.pathwaycomm...
Null IFN-gamma pathway View Gene Set 0.0001438 590 0.002854 2 NCI_NATURE - IFN-gamma pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 0.0001594 812 0.002854 2 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null EGFR-dependent Endothelin signaling events View Gene Set 8.768e-05 345 0.002854 2 NCI_NATURE - EGFR-dependent Endothelin signaling events gene set www.pathwaycomm...
Null LKB1 signaling events View Gene Set 6.355e-05 372 0.002854 2 NCI_NATURE - LKB1 signaling events gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 0.0001962 841 0.002854 2 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null IGF1 pathway View Gene Set 0.0002671 271 0.00347 14 NCI_NATURE - IGF1 pathway gene set www.pathwaycomm...
Null VEGFR1 specific signals View Gene Set 0.0002798 30 0.00347 14 NCI_NATURE - VEGFR1 specific signals gene set www.pathwaycomm...
Null Syndecan-2-mediated signaling events View Gene Set 0.0003764 77 0.004376 16 NCI_NATURE - Syndecan-2-mediated signaling events gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 0.0004019 688 0.004397 17 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 0.0004575 686 0.004728 18 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null IL6-mediated signaling events View Gene Set 0.0007432 48 0.007275 19 NCI_NATURE - IL6-mediated signaling events gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 0.0008731 677 0.007825 20 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...
Null Class I PI3K signaling events View Gene Set 0.0008835 632 0.007825 20 NCI_NATURE - Class I PI3K signaling events gene set www.pathwaycomm...
Null Signaling events mediated by focal adhesion kinase View Gene Set 0.0009265 660 0.007833 22 NCI_NATURE - Signaling events mediated by focal adhesion kinase gene set www.pathwaycomm...
Null Ephrin B reverse signaling View Gene Set 0.001072 28 0.008671 23 NCI_NATURE - Ephrin B reverse signaling gene set www.pathwaycomm...
Null EphrinB-EPHB pathway View Gene Set 0.0014 57 0.01041 24 NCI_NATURE - EphrinB-EPHB pathway gene set www.pathwaycomm...
Null Signaling events mediated by VEGFR1 and VEGFR2 View Gene Set 0.001376 69 0.01041 24 NCI_NATURE - Signaling events mediated by VEGFR1 and VEGFR2 gene set www.pathwaycomm...
Null Cellular roles of Anthrax toxin View Gene Set 0.002123 22 0.01336 26 NCI_NATURE - Cellular roles of Anthrax toxin gene set www.pathwaycomm...
Null TNF receptor signaling pathway View Gene Set 0.002221 299 0.01336 26 NCI_NATURE - TNF receptor signaling pathway gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 0.002227 796 0.01336 26 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null Regulation of p38-alpha and p38-beta View Gene Set 0.002148 164 0.01336 26 NCI_NATURE - Regulation of p38-alpha and p38-beta gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 0.001938 875 0.01336 26 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null IL1-mediated signaling events View Gene Set 0.002035 234 0.01336 26 NCI_NATURE - IL1-mediated signaling events gene set www.pathwaycomm...
Null Nectin adhesion pathway View Gene Set 0.002599 126 0.01511 32 NCI_NATURE - Nectin adhesion pathway gene set www.pathwaycomm...
Null Thromboxane A2 receptor signaling View Gene Set 0.002739 54 0.01544 33 NCI_NATURE - Thromboxane A2 receptor signaling gene set www.pathwaycomm...
Null S1P1 pathway View Gene Set 0.00334 71 0.01775 34 NCI_NATURE - S1P1 pathway gene set www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt View Gene Set 0.003266 532 0.01775 34 NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set www.pathwaycomm...
Null Downstream signaling in na&#xef;ve CD8+ T cells View Gene Set 0.004048 67 0.02091 36 NCI_NATURE - Downstream signaling in na&#xef;ve CD8+ T cells gene set www.pathwaycomm...
Null Trk receptor signaling mediated by the MAPK pathway View Gene Set 0.005019 34 0.02523 37 NCI_NATURE - Trk receptor signaling mediated by the MAPK pathway gene set www.pathwaycomm...
Null p38 MAPK signaling pathway View Gene Set 0.005174 189 0.02532 38 NCI_NATURE - p38 MAPK signaling pathway gene set www.pathwaycomm...
Null S1P4 pathway View Gene Set 0.008113 14 0.03869 39 NCI_NATURE - S1P4 pathway gene set www.pathwaycomm...
Null Sphingosine 1-phosphate (S1P) pathway View Gene Set 0.00866 138 0.03979 40 NCI_NATURE - Sphingosine 1-phosphate (S1P) pathway gene set www.pathwaycomm...
Null IL2-mediated signaling events View Gene Set 0.008772 116 0.03979 40 NCI_NATURE - IL2-mediated signaling events gene set www.pathwaycomm...
Null EPHA forward signaling View Gene Set 0.009512 31 0.04213 42 NCI_NATURE - EPHA forward signaling gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 0.01114 937 0.04819 43 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Cholesterol biosynthesis View Gene Set 1.139e-07 20 0.0001272 1 REACTOME - Cholesterol biosynthesis gene set www.pathwaycomm...
Null Metabolism of lipids and lipoproteins View Gene Set 3.458e-07 252 0.0001931 2 REACTOME - Metabolism of lipids and lipoproteins gene set www.pathwaycomm...
Null Insulin receptor recycling View Gene Set 2.526e-05 25 0.007055 3 REACTOME - Insulin receptor recycling gene set www.pathwaycomm...
Null Transmembrane transport of small molecules View Gene Set 2.219e-05 367 0.007055 3 REACTOME - Transmembrane transport of small molecules gene set www.pathwaycomm...
Null Iron uptake and transport View Gene Set 3.805e-05 37 0.007085 5 REACTOME - Iron uptake and transport gene set www.pathwaycomm...
Null Transferrin endocytosis and recycling View Gene Set 3.513e-05 27 0.007085 5 REACTOME - Transferrin endocytosis and recycling gene set www.pathwaycomm...
Null Fatty acid triacylglycerol and ketone body metabolism View Gene Set 5.068e-05 83 0.008087 7 REACTOME - Fatty acid triacylglycerol and ketone body metabolism gene set www.pathwaycomm... triacylglycerol... and ketone body...
Null ERK/MAPK targets View Gene Set 0.0001237 13 0.01727 8 REACTOME - ERK/MAPK targets gene set www.pathwaycomm...
Null Signaling in Immune system View Gene Set 0.000264 404 0.02599 9 REACTOME - Signaling in Immune system gene set www.pathwaycomm...
Null Triglyceride Biosynthesis View Gene Set 0.0002606 28 0.02599 9 REACTOME - Triglyceride Biosynthesis gene set www.pathwaycomm...
Null Nuclear Events (kinase and transcription factor activation) View Gene Set 0.0002279 16 0.02599 9 REACTOME - Nuclear Events (kinase and transcription factor activation) gene set www.pathwaycomm...
Null NGF signalling via TRKA from the plasma membrane View Gene Set 0.0002793 110 0.02599 9 REACTOME - NGF signalling via TRKA from the plasma membrane gene set www.pathwaycomm...
Null MAPK targets/ Nuclear events mediated by MAP kinases View Gene Set 0.0003465 21 0.02867 13 REACTOME - MAPK targets/ Nuclear events mediated by MAP kinases gene set www.pathwaycomm...
Null L1CAM interactions View Gene Set 0.0003593 83 0.02867 13 REACTOME - L1CAM interactions gene set www.pathwaycomm...
Null MAP kinase activation in TLR cascade View Gene Set 0.000521 33 0.0388 15 REACTOME - MAP kinase activation in TLR cascade gene set www.pathwaycomm...
Null RSK activation View Gene Set 0.0005759 7 0.04021 16 REACTOME - RSK activation gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1277 View Gene Set 1.793e-09 688 1.214e-06 1 microRNA targets for hsa-miR-1277 from miranda.targets www.mirbase.org...
Null hsa-miR-1206 View Gene Set 7.32e-08 1455 2.478e-05 2 microRNA targets for hsa-miR-1206 from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 1.244e-07 1844 2.598e-05 3 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 1.535e-07 1933 2.598e-05 3 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 2.38e-07 1802 3.222e-05 5 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 3.573e-07 2312 4.032e-05 6 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 7.454e-07 2745 7.209e-05 7 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 1.012e-06 1682 7.615e-05 8 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 9.348e-07 2065 7.615e-05 8 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 1.595e-06 2900 0.000108 10 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 2.07e-06 1946 0.0001274 11 microRNA targets for hsa-miR-181a from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 2.596e-06 2860 0.0001389 12 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 2.667e-06 2421 0.0001389 12 microRNA targets for hsa-miR-586 from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 3.377e-06 1687 0.0001633 14 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 4.036e-06 2212 0.0001822 15 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-1253 View Gene Set 4.437e-06 1976 0.0001877 16 microRNA targets for hsa-miR-1253 from miranda.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 5.489e-06 1169 0.0002186 17 microRNA targets for hsa-miR-142-3p from miranda.targets www.mirbase.org...
Null hsa-miR-147 View Gene Set 6.154e-06 1140 0.0002315 18 microRNA targets for hsa-miR-147 from miranda.targets www.mirbase.org...
Null hsa-miR-1261 View Gene Set 1.084e-05 979 0.0003286 19 microRNA targets for hsa-miR-1261 from miranda.targets www.mirbase.org...
Null hsa-miR-1272 View Gene Set 1.116e-05 1955 0.0003286 19 microRNA targets for hsa-miR-1272 from miranda.targets www.mirbase.org...
Null hsa-miR-1299 View Gene Set 1.027e-05 2168 0.0003286 19 microRNA targets for hsa-miR-1299 from miranda.targets www.mirbase.org...
Null hsa-miR-204 View Gene Set 9.889e-06 1890 0.0003286 19 microRNA targets for hsa-miR-204 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 9.501e-06 2983 0.0003286 19 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 1.26e-05 2295 0.0003556 24 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 1.406e-05 2118 0.0003807 25 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 1.571e-05 1840 0.0004091 26 microRNA targets for hsa-miR-579 from miranda.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 1.694e-05 1930 0.0004249 27 microRNA targets for hsa-miR-182 from miranda.targets www.mirbase.org...
Null hsa-miR-199b-5p View Gene Set 2.027e-05 1567 0.0004329 28 microRNA targets for hsa-miR-199b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 1.818e-05 2090 0.0004329 28 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-33a View Gene Set 1.964e-05 1258 0.0004329 28 microRNA targets for hsa-miR-33a from miranda.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 2.046e-05 2011 0.0004329 28 microRNA targets for hsa-miR-519c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 2.031e-05 1217 0.0004329 28 microRNA targets for hsa-miR-582-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1179 View Gene Set 2.355e-05 1381 0.0004728 33 microRNA targets for hsa-miR-1179 from miranda.targets www.mirbase.org...
Null hsa-miR-32 View Gene Set 2.374e-05 1319 0.0004728 33 microRNA targets for hsa-miR-32 from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 3.986e-05 2114 0.000771 35 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 4.365e-05 1660 0.0007776 36 microRNA targets for hsa-miR-448 from miranda.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 4.332e-05 1837 0.0007776 36 microRNA targets for hsa-miR-519a from miranda.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 4.242e-05 2159 0.0007776 36 microRNA targets for hsa-miR-9 from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 4.793e-05 1707 0.0008321 39 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 5.174e-05 2308 0.0008575 40 microRNA targets for hsa-miR-539 from miranda.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 5.288e-05 1494 0.0008575 40 microRNA targets for hsa-miR-576-5p from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 5.32e-05 2111 0.0008575 40 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-1244 View Gene Set 5.751e-05 2675 0.0009054 43 microRNA targets for hsa-miR-1244 from miranda.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 6.943e-05 1272 0.001049 44 microRNA targets for hsa-miR-101 from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 6.975e-05 1414 0.001049 44 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 7.293e-05 1454 0.001073 46 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1294 View Gene Set 7.468e-05 1427 0.001076 47 microRNA targets for hsa-miR-1294 from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 7.841e-05 2711 0.001106 48 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 8.804e-05 2438 0.001216 49 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-1259 View Gene Set 9.15e-05 1309 0.001228 50 microRNA targets for hsa-miR-1259 from miranda.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 9.25e-05 1786 0.001228 50 microRNA targets for hsa-miR-519b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 9.68e-05 1949 0.00126 52 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 0.0001099 1858 0.001404 53 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.0001122 2909 0.001406 54 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1257 View Gene Set 0.0001219 1202 0.001474 55 microRNA targets for hsa-miR-1257 from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 0.0001219 1874 0.001474 55 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0001276 1511 0.001497 57 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 0.0001282 1136 0.001497 57 microRNA targets for hsa-miR-384 from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.0001327 1449 0.001497 59 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-548n View Gene Set 0.0001324 3830 0.001497 59 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.0001533 1019 0.001553 61 microRNA targets for hsa-miR-1297 from miranda.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.0001537 1695 0.001553 61 microRNA targets for hsa-miR-30b from miranda.targets www.mirbase.org...
Null hsa-miR-33b View Gene Set 0.0001518 1071 0.001553 61 microRNA targets for hsa-miR-33b from miranda.targets www.mirbase.org...
Null hsa-miR-490-5p View Gene Set 0.0001417 830 0.001553 61 microRNA targets for hsa-miR-490-5p from miranda.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 0.000147 1386 0.001553 61 microRNA targets for hsa-miR-506 from miranda.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 0.0001509 1183 0.001553 61 microRNA targets for hsa-miR-567 from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.0001429 2384 0.001553 61 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.0001617 3270 0.00161 68 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.0001791 2301 0.001707 69 microRNA targets for hsa-miR-15a from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.0001759 1858 0.001707 69 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-489 View Gene Set 0.0001783 991 0.001707 69 microRNA targets for hsa-miR-489 from miranda.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 0.0001895 1222 0.001759 72 microRNA targets for hsa-miR-139-5p from miranda.targets www.mirbase.org...
Null hsa-miR-654-3p View Gene Set 0.0001897 1154 0.001759 72 microRNA targets for hsa-miR-654-3p from miranda.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 0.0002066 1307 0.00189 74 microRNA targets for hsa-miR-224 from miranda.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.0002107 1331 0.001902 75 microRNA targets for hsa-miR-155 from miranda.targets www.mirbase.org...
Null hsa-miR-627 View Gene Set 0.0002229 1116 0.001985 76 microRNA targets for hsa-miR-627 from miranda.targets www.mirbase.org...
Null hsa-miR-7 View Gene Set 0.0002589 1890 0.002277 77 microRNA targets for hsa-miR-7 from miranda.targets www.mirbase.org...
Null hsa-miR-616 View Gene Set 0.0003018 1094 0.002596 78 microRNA targets for hsa-miR-616 from miranda.targets www.mirbase.org...
Null hsa-miR-621 View Gene Set 0.0003029 615 0.002596 78 microRNA targets for hsa-miR-621 from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 0.0003207 2652 0.002714 80 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 0.0003257 1309 0.002722 81 microRNA targets for hsa-miR-499-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.0003369 1792 0.002782 82 microRNA targets for hsa-miR-30c from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.0003434 1877 0.002801 83 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.0003495 1644 0.002804 84 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-196a View Gene Set 0.0003561 1412 0.002804 84 microRNA targets for hsa-miR-196a from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.0003533 2504 0.002804 84 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-196b View Gene Set 0.0003685 1207 0.002868 87 microRNA targets for hsa-miR-196b from miranda.targets www.mirbase.org...
Null hsa-miR-1300 View Gene Set 0.0003763 1403 0.002895 88 microRNA targets for hsa-miR-1300 from miranda.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.0004069 1641 0.003095 89 microRNA targets for hsa-miR-382 from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.0004276 1861 0.003216 90 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-136 View Gene Set 0.0004418 2134 0.003287 91 microRNA targets for hsa-miR-136 from miranda.targets www.mirbase.org...
Null hsa-miR-610 View Gene Set 0.0004562 853 0.003321 92 microRNA targets for hsa-miR-610 from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.000453 2025 0.003321 92 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-211 View Gene Set 0.0004627 1917 0.003332 94 microRNA targets for hsa-miR-211 from miranda.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.0004987 1148 0.003554 95 microRNA targets for hsa-miR-153 from miranda.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.0005885 2077 0.00415 96 microRNA targets for hsa-miR-93 from miranda.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 0.0006305 1773 0.004338 97 microRNA targets for hsa-miR-190 from miranda.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 0.0006547 1232 0.004338 97 microRNA targets for hsa-miR-199a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-199a-5p View Gene Set 0.0006536 1394 0.004338 97 microRNA targets for hsa-miR-199a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-199b-3p View Gene Set 0.0006547 1232 0.004338 97 microRNA targets for hsa-miR-199b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.0006658 1901 0.004338 97 microRNA targets for hsa-miR-520d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 0.0006664 2420 0.004338 97 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-921 View Gene Set 0.0006608 1454 0.004338 97 microRNA targets for hsa-miR-921 from miranda.targets www.mirbase.org...
Null hsa-miR-938 View Gene Set 0.0006559 580 0.004338 97 microRNA targets for hsa-miR-938 from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.0006824 1319 0.004353 105 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 0.0007032 1494 0.004353 105 microRNA targets for hsa-miR-18b from miranda.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.0006997 2124 0.004353 105 microRNA targets for hsa-miR-330-3p from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 0.0006945 1921 0.004353 105 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-450b-3p View Gene Set 0.0007073 987 0.004353 105 microRNA targets for hsa-miR-450b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.0007017 1524 0.004353 105 microRNA targets for hsa-miR-587 from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.0007152 3124 0.004362 111 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-1246 View Gene Set 0.0007907 1219 0.004737 112 microRNA targets for hsa-miR-1246 from miranda.targets www.mirbase.org...
Null hsa-miR-297 View Gene Set 0.0007893 1497 0.004737 112 microRNA targets for hsa-miR-297 from miranda.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 0.0008079 1330 0.004798 114 microRNA targets for hsa-miR-96 from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.0008815 2681 0.005189 115 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-620 View Gene Set 0.0008924 1508 0.005208 116 microRNA targets for hsa-miR-620 from miranda.targets www.mirbase.org...
Null hsa-miR-103 View Gene Set 0.001063 1799 0.00605 117 microRNA targets for hsa-miR-103 from miranda.targets www.mirbase.org...
Null hsa-miR-107 View Gene Set 0.001063 1799 0.00605 117 microRNA targets for hsa-miR-107 from miranda.targets www.mirbase.org...
Null hsa-miR-125a-3p View Gene Set 0.001063 1648 0.00605 117 microRNA targets for hsa-miR-125a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-383 View Gene Set 0.00113 1319 0.006375 120 microRNA targets for hsa-miR-383 from miranda.targets www.mirbase.org...
Null hsa-miR-143 View Gene Set 0.001208 1432 0.006666 121 microRNA targets for hsa-miR-143 from miranda.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.001204 2061 0.006666 121 microRNA targets for hsa-miR-373 from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 0.001211 3175 0.006666 121 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1197 View Gene Set 0.001241 1210 0.006774 124 microRNA targets for hsa-miR-1197 from miranda.targets www.mirbase.org...
Null hsa-let-7f View Gene Set 0.001251 1584 0.006776 125 microRNA targets for hsa-let-7f from miranda.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 0.001266 2207 0.006804 126 microRNA targets for hsa-miR-580 from miranda.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 0.001292 1282 0.006887 127 microRNA targets for hsa-miR-409-3p from miranda.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 0.001348 1605 0.006968 128 microRNA targets for hsa-miR-518a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.001332 1590 0.006968 128 microRNA targets for hsa-miR-520a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-527 View Gene Set 0.001348 1605 0.006968 128 microRNA targets for hsa-miR-527 from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.001348 1774 0.006968 128 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-574-5p View Gene Set 0.001481 1642 0.007594 132 microRNA targets for hsa-miR-574-5p from miranda.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 0.001503 1494 0.00765 133 microRNA targets for hsa-miR-18a from miranda.targets www.mirbase.org...
Null hsa-miR-601 View Gene Set 0.001514 884 0.00765 133 microRNA targets for hsa-miR-601 from miranda.targets www.mirbase.org...
Null hsa-miR-1243 View Gene Set 0.001549 1196 0.007767 135 microRNA targets for hsa-miR-1243 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.001585 2173 0.007834 136 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.001585 2173 0.007834 136 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-532-5p View Gene Set 0.001718 1187 0.008427 138 microRNA targets for hsa-miR-532-5p from miranda.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.001772 1136 0.008631 139 microRNA targets for hsa-miR-491-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 0.001792 2210 0.008668 140 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-668 View Gene Set 0.001835 719 0.008809 141 microRNA targets for hsa-miR-668 from miranda.targets www.mirbase.org...
Null hsa-miR-768-5p View Gene Set 0.00186 2575 0.008867 142 microRNA targets for hsa-miR-768-5p from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 0.001942 2246 0.009196 143 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-128 View Gene Set 0.00204 1465 0.009593 144 microRNA targets for hsa-miR-128 from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 0.002141 2925 0.009955 145 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-892a View Gene Set 0.002147 1197 0.009955 145 microRNA targets for hsa-miR-892a from miranda.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.002288 1343 0.01054 147 microRNA targets for hsa-miR-29a from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.002335 1794 0.01068 148 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-190b View Gene Set 0.002371 1281 0.01074 149 microRNA targets for hsa-miR-190b from miranda.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.00238 1199 0.01074 149 microRNA targets for hsa-miR-376a from miranda.targets www.mirbase.org...
Null hsa-miR-135a View Gene Set 0.002479 2105 0.01083 151 microRNA targets for hsa-miR-135a from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.002451 1789 0.01083 151 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-451 View Gene Set 0.002452 334 0.01083 151 microRNA targets for hsa-miR-451 from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.002466 2072 0.01083 151 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-562 View Gene Set 0.002437 1077 0.01083 151 microRNA targets for hsa-miR-562 from miranda.targets www.mirbase.org...
Null hsa-miR-218 View Gene Set 0.002512 1341 0.01083 156 microRNA targets for hsa-miR-218 from miranda.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.002504 1842 0.01083 156 microRNA targets for hsa-miR-520c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.002601 1646 0.01115 158 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.002619 1491 0.01115 159 microRNA targets for hsa-miR-148b from miranda.targets www.mirbase.org...
Null hsa-miR-922 View Gene Set 0.002644 2129 0.01119 160 microRNA targets for hsa-miR-922 from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 0.002691 2539 0.01132 161 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-1298 View Gene Set 0.002711 406 0.01133 162 microRNA targets for hsa-miR-1298 from miranda.targets www.mirbase.org...
Null hsa-miR-1308 View Gene Set 0.002735 729 0.01134 163 microRNA targets for hsa-miR-1308 from miranda.targets www.mirbase.org...
Null hsa-miR-548m View Gene Set 0.002748 2295 0.01134 163 microRNA targets for hsa-miR-548m from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.002831 1859 0.01162 165 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 0.002849 1700 0.01162 166 microRNA targets for hsa-miR-520b from miranda.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.002907 1131 0.01178 167 microRNA targets for hsa-miR-219-2-3p from miranda.targets www.mirbase.org...
Null hsa-miR-137 View Gene Set 0.002934 1442 0.01182 168 microRNA targets for hsa-miR-137 from miranda.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.003043 1404 0.01214 169 microRNA targets for hsa-miR-29c from miranda.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 0.003048 1357 0.01214 169 microRNA targets for hsa-miR-376b from miranda.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 0.003133 1723 0.0124 171 microRNA targets for hsa-miR-27a from miranda.targets www.mirbase.org...
Null hsa-miR-27b View Gene Set 0.003221 1732 0.01263 172 microRNA targets for hsa-miR-27b from miranda.targets www.mirbase.org...
Null hsa-miR-526b View Gene Set 0.003229 1677 0.01263 172 microRNA targets for hsa-miR-526b from miranda.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 0.003285 1829 0.01278 174 microRNA targets for hsa-miR-488 from miranda.targets www.mirbase.org...
Null hsa-miR-1826 View Gene Set 0.00338 1313 0.01307 175 microRNA targets for hsa-miR-1826 from miranda.targets www.mirbase.org...
Null hsa-miR-453 View Gene Set 0.003415 849 0.01314 176 microRNA targets for hsa-miR-453 from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.003508 1804 0.01327 177 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-129-5p View Gene Set 0.003528 1724 0.01327 177 microRNA targets for hsa-miR-129-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 0.003505 1792 0.01327 177 microRNA targets for hsa-miR-30e from miranda.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 0.003523 1335 0.01327 177 microRNA targets for hsa-miR-613 from miranda.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.003772 1693 0.01411 181 microRNA targets for hsa-miR-149 from miranda.targets www.mirbase.org...
Null hsa-miR-571 View Gene Set 0.004114 966 0.0153 182 microRNA targets for hsa-miR-571 from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.004157 2189 0.01538 183 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 0.004223 2008 0.01554 184 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 0.004401 1206 0.01611 185 microRNA targets for hsa-miR-590-5p from miranda.targets www.mirbase.org...
Null hsa-let-7a View Gene Set 0.004432 1601 0.01613 186 microRNA targets for hsa-let-7a from miranda.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 0.004557 1222 0.0165 187 microRNA targets for hsa-miR-874 from miranda.targets www.mirbase.org...
Null hsa-miR-885-5p View Gene Set 0.004617 714 0.01663 188 microRNA targets for hsa-miR-885-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.004677 1500 0.01666 189 microRNA targets for hsa-miR-30d from miranda.targets www.mirbase.org...
Null hsa-miR-642 View Gene Set 0.004672 1484 0.01666 189 microRNA targets for hsa-miR-642 from miranda.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.00475 1416 0.01675 191 microRNA targets for hsa-miR-216b from miranda.targets www.mirbase.org...
Null hsa-miR-556-3p View Gene Set 0.00474 822 0.01675 191 microRNA targets for hsa-miR-556-3p from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.004926 2324 0.01728 193 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-597 View Gene Set 0.004998 729 0.01744 194 microRNA targets for hsa-miR-597 from miranda.targets www.mirbase.org...
Null hsa-miR-135b View Gene Set 0.005331 1979 0.01851 195 microRNA targets for hsa-miR-135b from miranda.targets www.mirbase.org...
Null hsa-miR-502-3p View Gene Set 0.005391 707 0.01862 196 microRNA targets for hsa-miR-502-3p from miranda.targets www.mirbase.org...
Null hsa-miR-140-5p View Gene Set 0.005484 1363 0.01885 197 microRNA targets for hsa-miR-140-5p from miranda.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 0.005577 932 0.01907 198 microRNA targets for hsa-miR-628-3p from miranda.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.005638 2253 0.01918 199 microRNA targets for hsa-miR-15b from miranda.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.005744 1577 0.01925 200 microRNA targets for hsa-miR-29b from miranda.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-656 View Gene Set 3.68e-06 876 0.002035 1 microRNA targets for hsa-miR-656 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-129-3p View Gene Set 8.395e-05 171 0.01035 2 microRNA targets for hsa-miR-129-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 9.359e-05 693 0.01035 2 microRNA targets for hsa-miR-30e from mirtarget2.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 5.627e-05 686 0.01035 2 microRNA targets for hsa-miR-369-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-769-3p View Gene Set 6.92e-05 162 0.01035 2 microRNA targets for hsa-miR-769-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.0001233 227 0.01136 6 microRNA targets for hsa-miR-153 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.0001522 694 0.01202 7 microRNA targets for hsa-miR-30d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.0002965 879 0.01281 8 microRNA targets for hsa-miR-181a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.0001987 887 0.01281 8 microRNA targets for hsa-miR-181b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.0002502 882 0.01281 8 microRNA targets for hsa-miR-181d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 0.0002813 680 0.01281 8 microRNA targets for hsa-miR-30a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.000266 446 0.01281 8 microRNA targets for hsa-miR-603 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 0.0003011 1137 0.01281 8 microRNA targets for hsa-miR-607 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-516b View Gene Set 0.0003381 261 0.01335 14 microRNA targets for hsa-miR-516b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0004068 493 0.01375 15 microRNA targets for hsa-miR-26b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.0004227 601 0.01375 15 microRNA targets for hsa-miR-539 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.000382 1120 0.01375 15 microRNA targets for hsa-miR-548a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.0005061 670 0.01555 18 microRNA targets for hsa-miR-30b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.000616 1151 0.01793 19 microRNA targets for hsa-miR-548c-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.0006985 665 0.01931 20 microRNA targets for hsa-miR-30c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.0007469 1147 0.01967 21 microRNA targets for hsa-miR-548d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0008819 498 0.02132 22 microRNA targets for hsa-miR-26a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-362-5p View Gene Set 0.0008866 191 0.02132 22 microRNA targets for hsa-miR-362-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-450b-3p View Gene Set 0.001017 106 0.02282 24 microRNA targets for hsa-miR-450b-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 0.001032 1362 0.02282 24 microRNA targets for hsa-miR-944 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.001232 909 0.02506 26 microRNA targets for hsa-miR-181c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 0.001269 977 0.02506 26 microRNA targets for hsa-miR-559 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 0.001223 414 0.02506 26 microRNA targets for hsa-miR-580 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-202 View Gene Set 0.001359 181 0.02592 29 microRNA targets for hsa-miR-202 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-137 View Gene Set 0.001549 415 0.02806 30 microRNA targets for hsa-miR-137 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.001573 539 0.02806 30 microRNA targets for hsa-miR-19a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 0.001717 1107 0.02967 32 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.001785 682 0.02991 33 microRNA targets for hsa-miR-330-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-197 View Gene Set 0.001887 163 0.0307 34 microRNA targets for hsa-miR-197 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 0.002162 1157 0.03416 35 microRNA targets for hsa-miR-548b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 0.002227 307 0.03421 36 microRNA targets for hsa-miR-499-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.002439 983 0.03645 37 microRNA targets for hsa-miR-570 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.002557 874 0.03721 38 microRNA targets for hsa-miR-340 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-219-5p View Gene Set 0.002674 102 0.03723 39 microRNA targets for hsa-miR-219-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-508-5p View Gene Set 0.002693 184 0.03723 39 microRNA targets for hsa-miR-508-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.002805 536 0.03783 41 microRNA targets for hsa-miR-19b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 0.00318 478 0.04187 42 microRNA targets for hsa-miR-182 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.003295 714 0.04237 43 microRNA targets for hsa-miR-519d from mirtarget2.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-135a View Gene Set 0.0002892 358 0.02366 1 microRNA targets for hsa-miR-135a from pictar.targets www.mirbase.org...
Null hsa-miR-135b View Gene Set 0.0004427 362 0.02366 1 microRNA targets for hsa-miR-135b from pictar.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.0005317 376 0.02366 1 microRNA targets for hsa-miR-153 from pictar.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 0.0002723 552 0.02366 1 microRNA targets for hsa-miR-182 from pictar.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.001335 559 0.04752 5 microRNA targets for hsa-miR-29b from pictar.targets www.mirbase.org...

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-106a View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-106a from targetscan.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-106b from targetscan.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-17 from targetscan.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-20a from targetscan.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-20b from targetscan.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-519d from targetscan.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 1.704e-05 986 0.000594 1 microRNA targets for hsa-miR-93 from targetscan.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 9.898e-05 1299 0.002683 8 microRNA targets for hsa-miR-124 from targetscan.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 9.898e-05 1299 0.002683 8 microRNA targets for hsa-miR-506 from targetscan.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 0.000134 841 0.002973 10 microRNA targets for hsa-miR-182 from targetscan.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.0001236 439 0.002973 10 microRNA targets for hsa-miR-24 from targetscan.targets www.mirbase.org...
Null hsa-miR-140-5p View Gene Set 0.0002239 251 0.004552 12 microRNA targets for hsa-miR-140-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.0002518 936 0.004726 13 microRNA targets for hsa-miR-9 from targetscan.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.0005068 850 0.007729 14 microRNA targets for hsa-miR-29a from targetscan.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.0005068 850 0.007729 14 microRNA targets for hsa-miR-29b from targetscan.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.0005068 850 0.007729 14 microRNA targets for hsa-miR-29c from targetscan.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.000587 549 0.008425 17 microRNA targets for hsa-miR-153 from targetscan.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.0009987 646 0.01218 18 microRNA targets for hsa-miR-1297 from targetscan.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0009987 646 0.01218 18 microRNA targets for hsa-miR-26a from targetscan.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0009987 646 0.01218 18 microRNA targets for hsa-miR-26b from targetscan.targets www.mirbase.org...
Null hsa-miR-1271 View Gene Set 0.001442 787 0.016 21 microRNA targets for hsa-miR-1271 from targetscan.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 0.001442 787 0.016 21 microRNA targets for hsa-miR-96 from targetscan.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 0.002661 1080 0.02404 23 microRNA targets for hsa-miR-30a from targetscan.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.002661 1080 0.02404 23 microRNA targets for hsa-miR-30b from targetscan.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.002661 1080 0.02404 23 microRNA targets for hsa-miR-30c from targetscan.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.002661 1080 0.02404 23 microRNA targets for hsa-miR-30d from targetscan.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 0.002661 1080 0.02404 23 microRNA targets for hsa-miR-30e from targetscan.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 0.003842 33 0.03129 28 microRNA targets for hsa-miR-191 from targetscan.targets www.mirbase.org...
Null hsa-miR-551a View Gene Set 0.003847 5 0.03129 28 microRNA targets for hsa-miR-551a from targetscan.targets www.mirbase.org...
Null hsa-miR-551b View Gene Set 0.003847 5 0.03129 28 microRNA targets for hsa-miR-551b from targetscan.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 0.00584 522 0.04597 31 microRNA targets for hsa-miR-448 from targetscan.targets www.mirbase.org...

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-96 View Gene Set 1.603e-05 196 0.03293 1 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-96 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181b View Gene Set 0.0001048 360 0.0333 2 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 View Gene Set 5.176e-05 238 0.0333 2 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-182 View Gene Set 9.356e-05 223 0.0333 2 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-182 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-24 View Gene Set 6.684e-05 111 0.0333 2 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-24 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-29a View Gene Set 0.0001135 288 0.0333 2 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-29a from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-183 View Gene Set 8.028e-05 38 0.0333 2 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-183 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-96 View Gene Set 0.0001389 97 0.03567 8 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-96 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-29c View Gene Set 0.000158 286 0.03606 9 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-29c from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-29b View Gene Set 0.0002036 287 0.04181 10 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-29b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 View Gene Set 0.0002274 243 0.04246 11 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 from miRNAtargetIntersection www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-142-3p View Gene Set 3.233e-08 1792 4.518e-05 1 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-142-3p View Gene Set 7e-08 1810 4.518e-05 1 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130b View Gene Set 7.892e-08 1947 4.518e-05 1 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-3p View Gene Set 1.171e-07 1283 4.518e-05 1 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-130b View Gene Set 1.087e-07 2027 4.518e-05 1 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-142-3p View Gene Set 6.539e-08 1279 4.518e-05 1 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130b View Gene Set 1.699e-07 1981 5.615e-05 7 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-142-3p View Gene Set 2.6e-07 1299 7.519e-05 8 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-3p View Gene Set 3.436e-07 1778 8.835e-05 9 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130a View Gene Set 3.889e-07 1949 8.999e-05 10 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-130a View Gene Set 6.41e-07 2029 0.0001349 11 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-130a View Gene Set 7.986e-07 1862 0.000154 12 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-374a View Gene Set 9.499e-07 2500 0.000157 13 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-374a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-944 View Gene Set 8.951e-07 3201 0.000157 13 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-944 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130a View Gene Set 1.136e-06 1972 0.0001753 15 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-182 View Gene Set 1.819e-06 2624 0.000263 16 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 2.315e-06 2450 0.0003151 17 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-568 View Gene Set 4.425e-06 2599 0.0003906 18 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-568 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-655 View Gene Set 4.525e-06 2490 0.0003906 18 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-655 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-182 View Gene Set 3.136e-06 2769 0.0003906 18 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p View Gene Set 3.322e-06 2649 0.0003906 18 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-130a View Gene Set 4.191e-06 1799 0.0003906 18 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181c View Gene Set 3.676e-06 2350 0.0003906 18 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-26a View Gene Set 4.598e-06 1828 0.0003906 18 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-374b View Gene Set 3.482e-06 2203 0.0003906 18 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-374b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-181c View Gene Set 3.819e-06 2200 0.0003906 18 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-203 View Gene Set 4.727e-06 2562 0.0003906 18 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-203 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-130a View Gene Set 4.42e-06 1901 0.0003906 18 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-203 View Gene Set 5.103e-06 2847 0.0004072 29 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-203 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181c View Gene Set 5.572e-06 2256 0.000416 30 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-26b View Gene Set 5.569e-06 1906 0.000416 30 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-374a View Gene Set 6.017e-06 2340 0.0004351 32 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-374a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-181a View Gene Set 7.177e-06 2712 0.0004373 33 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-5p View Gene Set 6.965e-06 3746 0.0004373 33 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-155 View Gene Set 6.578e-06 1940 0.0004373 33 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181a View Gene Set 7.56e-06 2345 0.0004373 33 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301b View Gene Set 7.367e-06 2363 0.0004373 33 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-32 View Gene Set 7.53e-06 1658 0.0004373 33 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-374a View Gene Set 6.745e-06 2329 0.0004373 33 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-374a from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-155 View Gene Set 6.271e-06 1488 0.0004373 33 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-576-5p View Gene Set 8.589e-06 2186 0.0004847 41 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-576-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-369-3p View Gene Set 1.083e-05 2149 0.0004969 42 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-369-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-374b View Gene Set 1.053e-05 2404 0.0004969 42 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-374b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-130a View Gene Set 1.08e-05 2357 0.0004969 42 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-142-5p View Gene Set 9.921e-06 2782 0.0004969 42 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26a View Gene Set 1.041e-05 1800 0.0004969 42 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26b View Gene Set 1.013e-05 1882 0.0004969 42 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-26a View Gene Set 1.01e-05 1593 0.0004969 42 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-203 View Gene Set 1.105e-05 2751 0.0004969 42 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-203 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-26a View Gene Set 9.499e-06 1805 0.0004969 42 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-26b View Gene Set 1.117e-05 1890 0.0004969 42 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-26a View Gene Set 9.342e-06 1698 0.0004969 42 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-181c View Gene Set 1.197e-05 2613 0.0005227 53 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-577 View Gene Set 1.222e-05 3197 0.0005237 54 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-577 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-182 View Gene Set 1.373e-05 2496 0.0005777 55 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-448 View Gene Set 1.432e-05 2294 0.0005918 56 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-448 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301a View Gene Set 1.506e-05 2387 0.0006114 57 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30b View Gene Set 1.581e-05 2092 0.0006307 58 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181a View Gene Set 1.719e-05 2438 0.0006743 59 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-181a View Gene Set 1.794e-05 2602 0.0006921 60 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-182 View Gene Set 1.971e-05 2337 0.0007478 61 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-539 View Gene Set 2.072e-05 2685 0.0007735 62 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-539 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-155 View Gene Set 2.202e-05 1927 0.0007893 63 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-32 View Gene Set 2.217e-05 1953 0.0007893 63 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-182 View Gene Set 2.18e-05 2467 0.0007893 63 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-20b View Gene Set 2.389e-05 1139 0.0008377 66 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-181c View Gene Set 2.507e-05 2502 0.0008658 67 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-9 View Gene Set 2.589e-05 2656 0.0008683 68 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 2.582e-05 1579 0.0008683 68 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-155 View Gene Set 2.749e-05 1915 0.0008835 70 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181d View Gene Set 2.68e-05 2688 0.0008835 70 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181d from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-181a View Gene Set 2.723e-05 2301 0.0008835 70 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-5p View Gene Set 2.854e-05 2931 0.0009036 73 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-181c View Gene Set 2.906e-05 2621 0.0009036 73 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-559 View Gene Set 2.929e-05 3456 0.0009036 73 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-559 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-579 View Gene Set 2.984e-05 2479 0.0009084 76 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-579 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-181a View Gene Set 3.058e-05 2715 0.000919 77 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130a View Gene Set 3.429e-05 2289 0.0009888 78 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-33a View Gene Set 3.382e-05 1453 0.0009888 78 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-33a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-155 View Gene Set 3.339e-05 1477 0.0009888 78 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-182 View Gene Set 3.461e-05 1441 0.0009888 78 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-338-5p View Gene Set 3.634e-05 2455 0.001026 82 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-338-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-130a View Gene Set 4.075e-05 2390 0.001048 83 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-153 View Gene Set 3.806e-05 1406 0.001048 83 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-32 View Gene Set 4.001e-05 1579 0.001048 83 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-30b View Gene Set 3.859e-05 2201 0.001048 83 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-155 View Gene Set 3.972e-05 1473 0.001048 83 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-153 View Gene Set 3.895e-05 1466 0.001048 83 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-32 View Gene Set 3.877e-05 1675 0.001048 83 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-101 View Gene Set 4.074e-05 1525 0.001048 83 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-101 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-3p View Gene Set 4.423e-05 2787 0.001125 91 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-182 View Gene Set 4.656e-05 1640 0.001171 92 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-454 View Gene Set 5.161e-05 2494 0.001264 93 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-203 View Gene Set 5.189e-05 2670 0.001264 93 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-203 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-101 View Gene Set 5.166e-05 1629 0.001264 93 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-101 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30c View Gene Set 5.406e-05 2188 0.001303 96 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-130a View Gene Set 5.573e-05 2199 0.00133 97 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-130b View Gene Set 5.657e-05 2420 0.001336 98 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-340 View Gene Set 5.721e-05 2801 0.001337 99 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-203 View Gene Set 6.201e-05 2930 0.00138 100 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-203 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-204 View Gene Set 6.144e-05 2477 0.00138 100 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-454 View Gene Set 6.029e-05 2229 0.00138 100 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-93 View Gene Set 6.138e-05 2566 0.00138 100 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-93 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-153 View Gene Set 6.132e-05 746 0.00138 100 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-130b View Gene Set 6.607e-05 2375 0.001442 105 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-101 View Gene Set 6.552e-05 1633 0.001442 105 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-101 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-203 View Gene Set 6.752e-05 2750 0.00146 107 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-203 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-224 View Gene Set 7.005e-05 1520 0.001501 108 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-224 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-369-3p View Gene Set 7.15e-05 1872 0.001518 109 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-369-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-26a View Gene Set 7.501e-05 1655 0.001578 110 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-155 View Gene Set 7.873e-05 2007 0.001595 111 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-32 View Gene Set 7.953e-05 1766 0.001595 111 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-454 View Gene Set 7.701e-05 2596 0.001595 111 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-101 View Gene Set 8.009e-05 1584 0.001595 111 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-101 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181b View Gene Set 8.064e-05 2603 0.001595 111 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-204 View Gene Set 7.946e-05 2141 0.001595 111 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20b View Gene Set 7.802e-05 1402 0.001595 111 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301b View Gene Set 8.639e-05 2655 0.001694 118 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-26a View Gene Set 8.758e-05 887 0.001703 119 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-101 View Gene Set 9.382e-05 1471 0.001794 120 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-101 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-27b View Gene Set 9.46e-05 2221 0.001794 120 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 9.45e-05 574 0.001794 120 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-301b View Gene Set 9.88e-05 2745 0.001844 123 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-30b View Gene Set 9.828e-05 2140 0.001844 123 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-105 View Gene Set 0.0001031 2271 0.001874 125 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-105 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-5p View Gene Set 0.0001037 4039 0.001874 125 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-137 View Gene Set 0.0001031 1941 0.001874 125 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-137 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-30d View Gene Set 0.0001022 1434 0.001874 125 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-448 View Gene Set 0.0001086 2225 0.001947 129 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-448 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 0.0001106 2653 0.001955 130 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-20b View Gene Set 0.0001104 1283 0.001955 130 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-27b View Gene Set 0.000112 2111 0.001964 132 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-136 View Gene Set 0.0001155 2229 0.00201 133 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-136 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-454 View Gene Set 0.0001165 1460 0.002012 134 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130b View Gene Set 0.0001182 2311 0.002026 135 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-374b View Gene Set 0.0001211 2245 0.002061 136 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-374b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-153 View Gene Set 0.0001232 1457 0.002082 137 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181b View Gene Set 0.0001297 2510 0.002175 138 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-101 View Gene Set 0.0001384 1405 0.0023 139 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-101 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-106b View Gene Set 0.0001392 1351 0.0023 139 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-106b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-155 View Gene Set 0.0001412 1613 0.002317 141 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 0.0001485 1208 0.00242 142 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-519c-3p View Gene Set 0.0001504 2699 0.002434 143 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-519c-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-30c View Gene Set 0.0001565 2297 0.002515 144 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-30c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-580 View Gene Set 0.0001616 2702 0.002579 145 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-580 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-32 View Gene Set 0.000167 1875 0.002616 146 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29a View Gene Set 0.0001664 1758 0.002616 146 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-448 View Gene Set 0.0001673 2038 0.002616 146 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-448 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-5p View Gene Set 0.0001689 3706 0.002623 149 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-301a View Gene Set 0.0001704 2780 0.002629 150 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-181b View Gene Set 0.0001749 2464 0.002681 151 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-7 View Gene Set 0.0001763 2119 0.002685 152 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-7 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-190 View Gene Set 0.0001789 1861 0.002685 153 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-190 from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-155 View Gene Set 0.0001799 1033 0.002685 153 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-106a View Gene Set 0.0001796 1271 0.002685 153 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-369-3p View Gene Set 0.0001859 2089 0.00274 156 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-369-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-15a View Gene Set 0.0001853 2659 0.00274 156 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-522 View Gene Set 0.0001903 2524 0.002787 158 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-522 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29c View Gene Set 0.0001978 1819 0.002878 159 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-153 View Gene Set 0.0002006 1840 0.002902 160 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-143 View Gene Set 0.0002083 2048 0.002967 161 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-143 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-519a View Gene Set 0.0002099 2566 0.002967 161 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-519a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-155 View Gene Set 0.0002103 1216 0.002967 161 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-26a View Gene Set 0.0002071 1019 0.002967 161 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-340 View Gene Set 0.0002148 3099 0.003012 165 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-27a View Gene Set 0.0002219 2103 0.003094 166 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-196a View Gene Set 0.0002257 1497 0.003109 167 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-196a from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29b View Gene Set 0.0002252 977 0.003109 167 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-656 View Gene Set 0.0002276 2395 0.003117 169 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-656 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301a View Gene Set 0.000232 2688 0.003158 170 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-let-7f View Gene Set 0.0002391 1880 0.003235 171 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-let-7f from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-641 View Gene Set 0.0002459 2967 0.003309 172 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-641 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-27a View Gene Set 0.0002545 2209 0.003403 173 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-153 View Gene Set 0.0002602 1887 0.003424 174 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-30c View Gene Set 0.0002616 2238 0.003424 174 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-30c from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-7 View Gene Set 0.000259 2094 0.003424 174 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-7 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-93 View Gene Set 0.0002629 2475 0.003424 174 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-93 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-106a View Gene Set 0.0002634 2496 0.003424 174 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-26b View Gene Set 0.0002672 2211 0.003435 179 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-199b-5p View Gene Set 0.0002672 1789 0.003435 179 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-199b-5p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29a View Gene Set 0.0002728 970 0.003488 181 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-26b View Gene Set 0.0002873 2088 0.003632 182 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30c View Gene Set 0.0002865 2433 0.003632 182 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-204 View Gene Set 0.0002951 2428 0.003688 184 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-155 View Gene Set 0.000298 1599 0.003688 184 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-19a View Gene Set 0.0002967 2550 0.003688 184 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-19a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-410 View Gene Set 0.0002965 1384 0.003688 184 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-410 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-18b View Gene Set 0.0003012 1614 0.003688 188 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-18b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-33b View Gene Set 0.0003004 1278 0.003688 188 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-33b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30d View Gene Set 0.0003061 1926 0.003727 190 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-33a View Gene Set 0.0003104 1923 0.003761 191 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-33a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-196b View Gene Set 0.0003135 1291 0.003778 192 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-196b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-204 View Gene Set 0.0003226 2528 0.003868 193 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-19a View Gene Set 0.0003254 2502 0.003881 194 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-19a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-155 View Gene Set 0.0003282 1583 0.003886 195 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-30b View Gene Set 0.0003292 1419 0.003886 195 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-200c View Gene Set 0.000336 2013 0.003927 197 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-200c from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-26b View Gene Set 0.000335 1017 0.003927 197 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-381 View Gene Set 0.0003444 2235 0.003964 199 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-381 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-29a View Gene Set 0.0003501 1458 0.003964 199 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-29a from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: hprdBatch.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 3.81e-10 437 7.621e-09 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 9.464e-07 154 9.464e-06 2 From NetPath for IL-1 Signaling Pathway www.netpath.org...
Null IL-4 Signaling Pathway View Gene Set 8.105e-06 217 5.403e-05 3 From NetPath for IL-4 Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 5.916e-05 80 0.0002366 4 From NetPath for IL-6 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 4.933e-05 792 0.0002366 4 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 7.138e-05 130 0.0002379 6 From NetPath for IL-5 Signaling Pathway www.netpath.org...
Null TNF-alpha Signaling Pathway View Gene Set 0.0004489 728 0.001282 7 From NetPath for TNF-alpha Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.003466 159 0.007702 8 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 0.00327 408 0.007702 8 From NetPath for IL-2 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 4.76e-06 161 9.044e-05 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 4.031e-05 291 0.000383 2 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 0.0001342 739 0.00085 3 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.001254 98 0.005957 4 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null IL-4 Signaling Pathway View Gene Set 0.008906 90 0.03384 5 From NetPath for IL-4 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 2.519e-14 586 5.038e-13 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 6.893e-08 1296 6.893e-07 2 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null IL-4 Signaling Pathway View Gene Set 1.73e-07 301 1.153e-06 3 From NetPath for IL-4 Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 1.768e-06 685 8.842e-06 4 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 1.666e-05 233 6.662e-05 5 From NetPath for IL-1 Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 7.137e-05 253 0.0002379 6 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 0.0001106 105 0.0003159 7 From NetPath for IL-6 Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 0.0002152 139 0.0005381 8 From NetPath for IL-5 Signaling Pathway www.netpath.org...
Null TNF-alpha Signaling Pathway View Gene Set 0.0006439 863 0.001431 9 From NetPath for TNF-alpha Signaling Pathway www.netpath.org...
Null B Cell Receptor Signaling Pathway View Gene Set 0.02021 418 0.04042 10 From NetPath for B Cell Receptor Signaling Pathway www.netpath.org...

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL1 View Gene Set 6.017e-07 85 7.221e-06 1 From NetPath for IL1 www.netpath.org...
Null TGF_beta_Receptor View Gene Set 3.43e-07 212 7.221e-06 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null FSH View Gene Set 9.818e-06 164 5.891e-05 3 From NetPath for FSH www.netpath.org...
Null TNFalpha View Gene Set 8.064e-06 113 5.891e-05 3 From NetPath for TNFalpha www.netpath.org...
Null IL4 View Gene Set 1.691e-05 199 8.116e-05 5 From NetPath for IL4 www.netpath.org...
Null IL5 View Gene Set 0.0001312 136 0.0005247 6 From NetPath for IL5 www.netpath.org...
Null IL2 View Gene Set 0.001629 514 0.005585 7 From NetPath for IL2 www.netpath.org...
Null TSH View Gene Set 0.002827 48 0.008482 8 From NetPath for TSH www.netpath.org...
Null Wnt View Gene Set 0.01556 36 0.04148 9 From NetPath for Wnt www.netpath.org...
Null Leptin View Gene Set 0.01966 31 0.04719 10 From NetPath for Leptin www.netpath.org...

Gene Set Collection: hprdManual.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 4.041e-06 399 7.677e-05 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null IL2 View Gene Set 6.982e-05 297 0.0006633 2 From NetPath for IL2 www.netpath.org...
Null TCR View Gene Set 0.0008829 178 0.005591 3 From NetPath for TCR www.netpath.org...
Null FSH View Gene Set 0.00251 99 0.01192 4 From NetPath for FSH www.netpath.org...
Null EGFR1 View Gene Set 0.009335 49 0.02554 5 From NetPath for EGFR1 www.netpath.org...
Null IL4 View Gene Set 0.009409 77 0.02554 5 From NetPath for IL4 www.netpath.org...
Null TSH View Gene Set 0.009102 45 0.02554 5 From NetPath for TSH www.netpath.org...

Gene Set Collection: hprdManual.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 1.654e-10 594 3.969e-09 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null FSH View Gene Set 1.586e-07 263 1.903e-06 2 From NetPath for FSH www.netpath.org...
Null IL4 View Gene Set 3.619e-07 269 2.895e-06 3 From NetPath for IL4 www.netpath.org...
Null IL2 View Gene Set 1.403e-06 796 8.417e-06 4 From NetPath for IL2 www.netpath.org...
Null IL1 View Gene Set 2.552e-06 120 1.225e-05 5 From NetPath for IL1 www.netpath.org...
Null TNFalpha View Gene Set 1.773e-05 121 7.093e-05 6 From NetPath for TNFalpha www.netpath.org...
Null TSH View Gene Set 0.0001087 90 0.0003728 7 From NetPath for TSH www.netpath.org...
Null IL5 View Gene Set 0.0002705 144 0.0008115 8 From NetPath for IL5 www.netpath.org...
Null TCR View Gene Set 0.01816 605 0.04843 9 From NetPath for TCR www.netpath.org...

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null V_FREAC2_01 View Gene Set 8.365e-05 227 0.005939 1 List of genes containing a conserved (FDR < 0.1%) V$FREAC2_01 TFBS located within 3 kb around the TSS for the FOXF2 transcription factor www.gene-regula...
Null V_NKX25_02 View Gene Set 8.122e-05 252 0.005939 1 List of genes containing a conserved (FDR < 0.1%) V$NKX25_02 TFBS located within 3 kb around the TSS for the Nkx2-5 transcription factor www.gene-regula...
Null V_RFX1_02 View Gene Set 5.246e-05 364 0.005939 1 List of genes containing a conserved (FDR < 0.1%) V$RFX1_02 TFBS located within 3 kb around the TSS for the RFX1 transcription factor www.gene-regula...
Null V_CEBPA_01 View Gene Set 0.0001562 45 0.008316 4 List of genes containing a conserved (FDR < 0.1%) V$CEBPA_01 TFBS located within 3 kb around the TSS for the C/EBPalpha transcription factor www.gene-regula...
Null V_FREAC4_01 View Gene Set 0.0007398 281 0.03152 5 List of genes containing a conserved (FDR < 0.1%) V$FREAC4_01 TFBS located within 3 kb around the TSS for the FOXD1 transcription factor www.gene-regula...
Null V_CREB_01 View Gene Set 0.001253 200 0.03211 6 List of genes containing a conserved (FDR < 0.1%) V$CREB_01 TFBS located within 3 kb around the TSS for the CREB transcription factor www.gene-regula...
Null V_NFKB_C View Gene Set 0.0009842 143 0.03211 6 List of genes containing a conserved (FDR < 0.1%) V$NFKB_C TFBS located within 3 kb around the TSS for the NF-kappaB transcription factor www.gene-regula...
Null V_OCT_C View Gene Set 0.001357 316 0.03211 6 List of genes containing a conserved (FDR < 0.1%) V$OCT_C TFBS located within 3 kb around the TSS for the Oct-B1 transcription factor www.gene-regula...
Null V_PBX1_02 View Gene Set 0.001114 223 0.03211 6 List of genes containing a conserved (FDR < 0.1%) V$PBX1_02 TFBS located within 3 kb around the TSS for the Pbx1a transcription factor www.gene-regula...
Null V_AP1_01 View Gene Set 0.001535 169 0.03269 10 List of genes containing a conserved (FDR < 0.1%) V$AP1_01 TFBS located within 3 kb around the TSS for the AP-1 transcription factor www.gene-regula...
Null V_RORA1_01 View Gene Set 0.00182 133 0.03524 11 List of genes containing a conserved (FDR < 0.1%) V$RORA1_01 TFBS located within 3 kb around the TSS for the RORalpha1 transcription factor www.gene-regula...
Null V_ATF_01 View Gene Set 0.002947 235 0.04185 12 List of genes containing a conserved (FDR < 0.1%) V$ATF_01 TFBS located within 3 kb around the TSS for the ATF transcription factor www.gene-regula...
Null V_CREBP1CJUN_01 View Gene Set 0.002859 262 0.04185 12 List of genes containing a conserved (FDR < 0.1%) V$CREBP1CJUN_01 TFBS located within 3 kb around the TSS for the ATF-2 transcription factor www.gene-regula...
Null V_FOXJ2_02 View Gene Set 0.002721 257 0.04185 12 List of genes containing a conserved (FDR < 0.1%) V$FOXJ2_02 TFBS located within 3 kb around the TSS for the FOXJ2 (long isoform) transcription factor www.gene-regula...
Null V_HNF1_01 View Gene Set 0.002442 185 0.04185 12 List of genes containing a conserved (FDR < 0.1%) V$HNF1_01 TFBS located within 3 kb around the TSS for the HNF-1A transcription factor www.gene-regula...
Null V_FOXJ2_01 View Gene Set 0.004105 51 0.04764 16 List of genes containing a conserved (FDR < 0.1%) V$FOXJ2_01 TFBS located within 3 kb around the TSS for the FOXJ2 (long isoform) transcription factor www.gene-regula...
Null V_HLF_01 View Gene Set 0.003863 184 0.04764 16 List of genes containing a conserved (FDR < 0.1%) V$HLF_01 TFBS located within 3 kb around the TSS for the Hlf transcription factor www.gene-regula...
Null V_LHX3_01 View Gene Set 0.00425 80 0.04764 16 List of genes containing a conserved (FDR < 0.1%) V$LHX3_01 TFBS located within 3 kb around the TSS for the LHX3a transcription factor www.gene-regula...
Null V_MEF2_02 View Gene Set 0.003851 157 0.04764 16 List of genes containing a conserved (FDR < 0.1%) V$MEF2_02 TFBS located within 3 kb around the TSS for the MEF-2A transcription factor www.gene-regula...