Results

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AFA results for: TSA1-e06.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04142 View Gene Set 1.771e-08 121 3.79e-06 1 Lysosome www.genome.jp/d...
KEGG 04070 View Gene Set 1.24e-07 78 1.327e-05 2 Phosphatidylinositol signaling system www.genome.jp/d...
KEGG 01100 View Gene Set 3.137e-07 1120 2.238e-05 3 Metabolic pathways www.genome.jp/d...
KEGG 04360 View Gene Set 1.983e-06 129 0.0001061 4 Axon guidance www.genome.jp/d...
KEGG 00100 View Gene Set 2.162e-05 17 0.0009254 5 Steroid biosynthesis www.genome.jp/d...
KEGG 04145 View Gene Set 4.221e-05 158 0.001505 6 Phagosome www.genome.jp/d...
KEGG 00562 View Gene Set 7.207e-05 57 0.002203 7 Inositol phosphate metabolism www.genome.jp/d...
KEGG 00280 View Gene Set 0.0001776 44 0.004223 8 Valine leucine and isoleucine degradation www.genome.jp/d...
KEGG 05110 View Gene Set 0.000161 56 0.004223 8 Vibrio cholerae infection www.genome.jp/d...
KEGG 04010 View Gene Set 0.0002267 267 0.004851 10 MAPK signaling pathway www.genome.jp/d...
KEGG 04966 View Gene Set 0.0003844 27 0.007478 11 Collecting duct acid secretion www.genome.jp/d...
KEGG 04910 View Gene Set 0.0005044 137 0.008995 12 Insulin signaling pathway www.genome.jp/d...
KEGG 04971 View Gene Set 0.000589 74 0.009696 13 Gastric acid secretion www.genome.jp/d...
KEGG 00330 View Gene Set 0.001042 54 0.01593 14 Arginine and proline metabolism www.genome.jp/d...
KEGG 00020 View Gene Set 0.001634 31 0.02075 15 Citrate cycle (TCA cycle) www.genome.jp/d...
KEGG 00534 View Gene Set 0.001455 26 0.02075 15 Glycosaminoglycan biosynthesis - heparan sulfate www.genome.jp/d...
KEGG 01040 View Gene Set 0.001649 21 0.02075 15 Biosynthesis of unsaturated fatty acids www.genome.jp/d...
KEGG 00910 View Gene Set 0.001925 23 0.02168 18 Nitrogen metabolism www.genome.jp/d...
KEGG 04960 View Gene Set 0.001907 42 0.02168 18 Aldosterone-regulated sodium reabsorption www.genome.jp/d...
KEGG 00920 View Gene Set 0.002321 13 0.02484 20 Sulfur metabolism www.genome.jp/d...
KEGG 00511 View Gene Set 0.003146 16 0.03202 21 Other glycan degradation www.genome.jp/d...
KEGG 00520 View Gene Set 0.003292 45 0.03202 21 Amino sugar and nucleotide sugar metabolism www.genome.jp/d...
KEGG 03320 View Gene Set 0.00374 69 0.0348 23 PPAR signaling pathway www.genome.jp/d...
KEGG 04912 View Gene Set 0.004278 101 0.03814 24 GnRH signaling pathway www.genome.jp/d...
KEGG 00564 View Gene Set 0.004664 79 0.03961 25 Glycerophospholipid metabolism www.genome.jp/d...
KEGG 04144 View Gene Set 0.004812 205 0.03961 25 Endocytosis www.genome.jp/d...
KEGG 04670 View Gene Set 0.005063 118 0.04013 27 Leukocyte transendothelial migration www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0016020 View Gene Set 7.742e-29 7286 1.034e-24 1 membrane amigo.geneontol...
GO GO:0044425 View Gene Set 8.057e-22 6145 5.382e-18 2 membrane part amigo.geneontol...
GO GO:0005886 View Gene Set 6.209e-21 3759 2.765e-17 3 plasma membrane amigo.geneontol...
GO GO:0044281 View Gene Set 2.833e-16 1698 9.462e-13 4 small molecule metabolic process amigo.geneontol...
GO GO:0032501 View Gene Set 2.403e-15 4631 6.42e-12 5 multicellular organismal process amigo.geneontol...
GO GO:0031224 View Gene Set 9.443e-15 5387 2.103e-11 6 intrinsic to membrane amigo.geneontol...
GO GO:0016021 View Gene Set 1.566e-14 5278 2.989e-11 7 integral to membrane amigo.geneontol...
GO GO:0044459 View Gene Set 5.014e-12 2023 8.373e-09 8 plasma membrane part amigo.geneontol...
GO GO:0051179 View Gene Set 9.948e-12 3376 1.477e-08 9 localization amigo.geneontol...
GO GO:0006810 View Gene Set 4.008e-11 2892 5.355e-08 10 transport amigo.geneontol...
GO GO:0000267 View Gene Set 5.644e-11 1077 6.855e-08 11 cell fraction amigo.geneontol...
GO GO:0023052 View Gene Set 9.04e-11 3571 1.006e-07 12 signaling amigo.geneontol...
GO GO:0051234 View Gene Set 2.379e-10 2928 2.445e-07 13 establishment of localization amigo.geneontol...
GO GO:0005626 View Gene Set 5.303e-10 830 5.06e-07 14 insoluble fraction amigo.geneontol...
GO GO:0042221 View Gene Set 9.287e-10 1516 8.271e-07 15 response to chemical stimulus amigo.geneontol...
GO GO:0031982 View Gene Set 1.074e-09 718 8.969e-07 16 vesicle amigo.geneontol...
GO GO:0005624 View Gene Set 1.34e-09 799 1.053e-06 17 membrane fraction amigo.geneontol...
GO GO:0016192 View Gene Set 1.732e-09 672 1.286e-06 18 vesicle-mediated transport amigo.geneontol...
GO GO:0006811 View Gene Set 2.295e-09 829 1.533e-06 19 ion transport amigo.geneontol...
GO GO:0031988 View Gene Set 2.182e-09 670 1.533e-06 19 membrane-bounded vesicle amigo.geneontol...
GO GO:0031410 View Gene Set 5.11e-09 688 3.251e-06 21 cytoplasmic vesicle amigo.geneontol...
GO GO:0007275 View Gene Set 5.809e-09 3067 3.527e-06 22 multicellular organismal development amigo.geneontol...
GO GO:0048731 View Gene Set 6.198e-09 2544 3.6e-06 23 system development amigo.geneontol...
GO GO:0048856 View Gene Set 6.773e-09 2763 3.77e-06 24 anatomical structure development amigo.geneontol...
GO GO:0006629 View Gene Set 7.226e-09 910 3.861e-06 25 lipid metabolic process amigo.geneontol...
GO GO:0006066 View Gene Set 1.362e-08 471 6.971e-06 26 alcohol metabolic process amigo.geneontol...
GO GO:0016023 View Gene Set 1.409e-08 651 6.971e-06 26 cytoplasmic membrane-bounded vesicle amigo.geneontol...
GO GO:0005794 View Gene Set 1.853e-08 893 8.84e-06 28 Golgi apparatus amigo.geneontol...
GO GO:0023046 View Gene Set 2.099e-08 2577 9.671e-06 29 signaling process amigo.geneontol...
GO GO:0006812 View Gene Set 2.826e-08 587 1.259e-05 30 cation transport amigo.geneontol...
GO GO:0023060 View Gene Set 3.068e-08 2571 1.322e-05 31 signal transmission amigo.geneontol...
GO GO:0044444 View Gene Set 4.41e-08 5184 1.841e-05 32 cytoplasmic part amigo.geneontol...
GO GO:0032502 View Gene Set 4.714e-08 3351 1.908e-05 33 developmental process amigo.geneontol...
GO GO:0006082 View Gene Set 5.749e-08 620 2.087e-05 34 organic acid metabolic process amigo.geneontol...
GO GO:0006897 View Gene Set 5.711e-08 276 2.087e-05 34 endocytosis amigo.geneontol...
GO GO:0010324 View Gene Set 5.711e-08 276 2.087e-05 34 membrane invagination amigo.geneontol...
GO GO:0019752 View Gene Set 5.936e-08 613 2.087e-05 34 carboxylic acid metabolic process amigo.geneontol...
GO GO:0043436 View Gene Set 5.936e-08 613 2.087e-05 34 oxoacid metabolic process amigo.geneontol...
GO GO:0032879 View Gene Set 6.318e-08 741 2.164e-05 39 regulation of localization amigo.geneontol...
GO GO:0005509 View Gene Set 6.54e-08 626 2.184e-05 40 calcium ion binding amigo.geneontol...
GO GO:0042995 View Gene Set 7.728e-08 766 2.518e-05 41 cell projection amigo.geneontol...
GO GO:0007154 View Gene Set 9.081e-08 1687 2.889e-05 42 cell communication amigo.geneontol...
GO GO:0031226 View Gene Set 1.344e-07 1208 4.176e-05 43 intrinsic to plasma membrane amigo.geneontol...
GO GO:0006575 View Gene Set 1.89e-07 183 5.703e-05 44 cellular amino acid derivative metabolic process amigo.geneontol...
GO GO:0061024 View Gene Set 1.921e-07 446 5.703e-05 44 membrane organization amigo.geneontol...
GO GO:0009205 View Gene Set 2.32e-07 253 6.739e-05 46 purine ribonucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0048869 View Gene Set 2.559e-07 1883 7.122e-05 47 cellular developmental process amigo.geneontol...
GO GO:0005887 View Gene Set 2.511e-07 1186 7.122e-05 47 integral to plasma membrane amigo.geneontol...
GO GO:0016044 View Gene Set 2.78e-07 445 7.58e-05 49 cellular membrane organization amigo.geneontol...
GO GO:0065008 View Gene Set 3.661e-07 1741 9.781e-05 50 regulation of biological quality amigo.geneontol...
GO GO:0042180 View Gene Set 3.761e-07 627 9.851e-05 51 cellular ketone metabolic process amigo.geneontol...
GO GO:0030154 View Gene Set 3.908e-07 1834 0.0001004 52 cell differentiation amigo.geneontol...
GO GO:0009144 View Gene Set 4.468e-07 258 0.0001126 53 purine nucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0009199 View Gene Set 4.736e-07 254 0.0001172 54 ribonucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0051049 View Gene Set 5.547e-07 525 0.0001332 55 regulation of transport amigo.geneontol...
GO GO:0031012 View Gene Set 5.584e-07 371 0.0001332 55 extracellular matrix amigo.geneontol...
GO GO:0009141 View Gene Set 5.818e-07 267 0.0001364 57 nucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0010033 View Gene Set 6.088e-07 903 0.0001402 58 response to organic substance amigo.geneontol...
GO GO:0005215 View Gene Set 7.314e-07 1174 0.0001656 59 transporter activity amigo.geneontol...
GO GO:0005737 View Gene Set 7.776e-07 7676 0.0001731 60 cytoplasm amigo.geneontol...
GO GO:0008324 View Gene Set 7.906e-07 548 0.0001731 61 cation transmembrane transporter activity amigo.geneontol...
GO GO:0034220 View Gene Set 8.432e-07 93 0.0001817 62 ion transmembrane transport amigo.geneontol...
GO GO:0050896 View Gene Set 8.571e-07 3765 0.0001818 63 response to stimulus amigo.geneontol...
GO GO:0044282 View Gene Set 1.05e-06 441 0.0002193 64 small molecule catabolic process amigo.geneontol...
GO GO:0005773 View Gene Set 1.069e-06 286 0.0002198 65 vacuole amigo.geneontol...
GO GO:0030136 View Gene Set 1.168e-06 147 0.0002365 66 clathrin-coated vesicle amigo.geneontol...
GO GO:0006754 View Gene Set 1.301e-06 90 0.0002553 67 ATP biosynthetic process amigo.geneontol...
GO GO:0007169 View Gene Set 1.281e-06 296 0.0002553 67 transmembrane receptor protein tyrosine kinase signaling pathway amigo.geneontol...
GO GO:0022857 View Gene Set 1.318e-06 905 0.0002553 67 transmembrane transporter activity amigo.geneontol...
GO GO:0008202 View Gene Set 1.472e-06 238 0.0002788 70 steroid metabolic process amigo.geneontol...
GO GO:0005576 View Gene Set 1.481e-06 2036 0.0002788 70 extracellular region amigo.geneontol...
GO GO:0009206 View Gene Set 1.821e-06 100 0.000338 72 purine ribonucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0009888 View Gene Set 2.092e-06 827 0.000371 73 tissue development amigo.geneontol...
GO GO:0048513 View Gene Set 2.088e-06 1931 0.000371 73 organ development amigo.geneontol...
GO GO:0022804 View Gene Set 2.11e-06 343 0.000371 73 active transmembrane transporter activity amigo.geneontol...
GO GO:0022891 View Gene Set 2.107e-06 823 0.000371 73 substrate-specific transmembrane transporter activity amigo.geneontol...
GO GO:0046034 View Gene Set 2.42e-06 100 0.0004198 77 ATP metabolic process amigo.geneontol...
GO GO:0044283 View Gene Set 2.509e-06 589 0.0004298 78 small molecule biosynthetic process amigo.geneontol...
GO GO:0044255 View Gene Set 2.596e-06 588 0.0004353 79 cellular lipid metabolic process amigo.geneontol...
GO GO:0015075 View Gene Set 2.606e-06 715 0.0004353 79 ion transmembrane transporter activity amigo.geneontol...
GO GO:0023033 View Gene Set 2.648e-06 2547 0.0004368 81 signaling pathway amigo.geneontol...
GO GO:0042625 View Gene Set 2.723e-06 69 0.0004436 82 ATPase activity coupled to transmembrane movement of ions amigo.geneontol...
GO GO:0012505 View Gene Set 2.792e-06 1454 0.0004495 83 endomembrane system amigo.geneontol...
GO GO:0009145 View Gene Set 3.281e-06 101 0.0005219 84 purine nucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0009150 View Gene Set 3.349e-06 275 0.0005264 85 purine ribonucleotide metabolic process amigo.geneontol...
GO GO:0009142 View Gene Set 4.195e-06 103 0.0006518 86 nucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0006163 View Gene Set 4.404e-06 446 0.0006763 87 purine nucleotide metabolic process amigo.geneontol...
GO GO:0003008 View Gene Set 4.856e-06 1632 0.0007372 88 system process amigo.geneontol...
GO GO:0019717 View Gene Set 4.915e-06 94 0.0007378 89 synaptosome amigo.geneontol...
GO GO:0009201 View Gene Set 4.993e-06 101 0.0007412 90 ribonucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0032787 View Gene Set 5.53e-06 356 0.0008119 91 monocarboxylic acid metabolic process amigo.geneontol...
GO GO:0031090 View Gene Set 5.598e-06 1905 0.0008129 92 organelle membrane amigo.geneontol...
GO GO:0022892 View Gene Set 6.671e-06 964 0.0009583 93 substrate-specific transporter activity amigo.geneontol...
GO GO:0022890 View Gene Set 7.671e-06 215 0.00109 94 inorganic cation transmembrane transporter activity amigo.geneontol...
GO GO:0009719 View Gene Set 7.799e-06 513 0.001097 95 response to endogenous stimulus amigo.geneontol...
GO GO:0042592 View Gene Set 8.857e-06 844 0.001233 96 homeostatic process amigo.geneontol...
GO GO:0009725 View Gene Set 9.002e-06 460 0.00124 97 response to hormone stimulus amigo.geneontol...
GO GO:0007166 View Gene Set 9.86e-06 1497 0.001311 98 cell surface receptor linked signaling pathway amigo.geneontol...
GO GO:0010646 View Gene Set 9.822e-06 1173 0.001311 98 regulation of cell communication amigo.geneontol...
GO GO:0016054 View Gene Set 9.908e-06 127 0.001311 98 organic acid catabolic process amigo.geneontol...
GO GO:0046395 View Gene Set 9.908e-06 127 0.001311 98 carboxylic acid catabolic process amigo.geneontol...
GO GO:0045202 View Gene Set 1.021e-05 371 0.001338 102 synapse amigo.geneontol...
GO GO:0030030 View Gene Set 1.251e-05 458 0.001622 103 cell projection organization amigo.geneontol...
GO GO:0005578 View Gene Set 1.311e-05 313 0.001684 104 proteinaceous extracellular matrix amigo.geneontol...
GO GO:0030001 View Gene Set 1.389e-05 496 0.001767 105 metal ion transport amigo.geneontol...
GO GO:0016820 View Gene Set 1.464e-05 105 0.001845 106 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances amigo.geneontol...
GO GO:0007267 View Gene Set 1.539e-05 720 0.001907 107 cell-cell signaling amigo.geneontol...
GO GO:0003824 View Gene Set 1.541e-05 5198 0.001907 107 catalytic activity amigo.geneontol...
GO GO:0030135 View Gene Set 1.633e-05 179 0.002001 109 coated vesicle amigo.geneontol...
GO GO:0005783 View Gene Set 1.725e-05 1024 0.002095 110 endoplasmic reticulum amigo.geneontol...
GO GO:0043434 View Gene Set 1.753e-05 201 0.00211 111 response to peptide hormone stimulus amigo.geneontol...
GO GO:0044431 View Gene Set 2.054e-05 540 0.00245 112 Golgi apparatus part amigo.geneontol...
GO GO:0007165 View Gene Set 2.072e-05 2232 0.00245 113 signal transduction amigo.geneontol...
GO GO:0048037 View Gene Set 2.181e-05 249 0.002556 114 cofactor binding amigo.geneontol...
GO GO:0044421 View Gene Set 2.246e-05 1001 0.002604 115 extracellular region part amigo.geneontol...
GO GO:0043492 View Gene Set 2.261e-05 104 0.002604 115 ATPase activity coupled to movement of substances amigo.geneontol...
GO GO:0048878 View Gene Set 2.283e-05 563 0.002607 117 chemical homeostasis amigo.geneontol...
GO GO:0006631 View Gene Set 2.344e-05 245 0.002654 118 fatty acid metabolic process amigo.geneontol...
GO GO:0007399 View Gene Set 2.365e-05 1174 0.002655 119 nervous system development amigo.geneontol...
GO GO:0042626 View Gene Set 2.446e-05 103 0.002723 120 ATPase activity coupled to transmembrane movement of substances amigo.geneontol...
GO GO:0009259 View Gene Set 2.588e-05 286 0.002858 121 ribonucleotide metabolic process amigo.geneontol...
GO GO:0009605 View Gene Set 2.831e-05 666 0.003077 122 response to external stimulus amigo.geneontol...
GO GO:0015399 View Gene Set 2.856e-05 114 0.003077 122 primary active transmembrane transporter activity amigo.geneontol...
GO GO:0015405 View Gene Set 2.856e-05 114 0.003077 122 P-P-bond-hydrolysis-driven transmembrane transporter activity amigo.geneontol...
GO GO:0030054 View Gene Set 2.91e-05 539 0.00311 125 cell junction amigo.geneontol...
GO GO:0055086 View Gene Set 3.11e-05 580 0.003297 126 nucleobase nucleoside and nucleotide metabolic process amigo.geneontol...
GO GO:0006519 View Gene Set 3.157e-05 371 0.003321 127 cellular amino acid and derivative metabolic process amigo.geneontol...
GO GO:0048468 View Gene Set 3.221e-05 804 0.003362 128 cell development amigo.geneontol...
GO GO:0016125 View Gene Set 3.378e-05 105 0.003499 129 sterol metabolic process amigo.geneontol...
GO GO:0015985 View Gene Set 3.472e-05 42 0.003541 130 energy coupled proton transport down electrochemical gradient amigo.geneontol...
GO GO:0015986 View Gene Set 3.472e-05 42 0.003541 130 ATP synthesis coupled proton transport amigo.geneontol...
GO GO:0050877 View Gene Set 3.799e-05 1272 0.003845 132 neurological system process amigo.geneontol...
GO GO:0032868 View Gene Set 4.247e-05 137 0.004267 133 response to insulin stimulus amigo.geneontol...
GO GO:0060627 View Gene Set 4.974e-05 126 0.004886 134 regulation of vesicle-mediated transport amigo.geneontol...
GO GO:0000323 View Gene Set 4.971e-05 239 0.004886 134 lytic vacuole amigo.geneontol...
GO GO:0005764 View Gene Set 4.971e-05 239 0.004886 134 lysosome amigo.geneontol...
GO GO:0015672 View Gene Set 5.068e-05 306 0.004942 137 monovalent inorganic cation transport amigo.geneontol...
GO GO:0035556 View Gene Set 5.726e-05 1205 0.005543 138 intracellular signal transduction amigo.geneontol...
GO GO:0009308 View Gene Set 5.802e-05 414 0.005576 139 amine metabolic process amigo.geneontol...
GO GO:0006753 View Gene Set 6.067e-05 557 0.005705 140 nucleoside phosphate metabolic process amigo.geneontol...
GO GO:0009117 View Gene Set 6.067e-05 557 0.005705 140 nucleotide metabolic process amigo.geneontol...
GO GO:0019226 View Gene Set 6.116e-05 421 0.005705 140 transmission of nerve impulse amigo.geneontol...
GO GO:0030029 View Gene Set 6.064e-05 301 0.005705 140 actin filament-based process amigo.geneontol...
GO GO:0030036 View Gene Set 6.149e-05 284 0.005705 140 actin cytoskeleton organization amigo.geneontol...
GO GO:0019829 View Gene Set 6.885e-05 31 0.006344 145 cation-transporting ATPase activity amigo.geneontol...
GO GO:0006818 View Gene Set 8.304e-05 67 0.007599 146 hydrogen transport amigo.geneontol...
GO GO:0043005 View Gene Set 9.425e-05 371 0.008566 147 neuron projection amigo.geneontol...
GO GO:0005975 View Gene Set 9.502e-05 550 0.008578 148 carbohydrate metabolic process amigo.geneontol...
GO GO:0016197 View Gene Set 0.0001031 72 0.009248 149 endosome transport amigo.geneontol...
GO GO:0033293 View Gene Set 0.0001044 67 0.009301 150 monocarboxylic acid binding amigo.geneontol...
GO GO:0009152 View Gene Set 0.0001076 118 0.009519 151 purine ribonucleotide biosynthetic process amigo.geneontol...
GO GO:0007155 View Gene Set 0.0001111 827 0.009574 152 cell adhesion amigo.geneontol...
GO GO:0008544 View Gene Set 0.0001106 203 0.009574 152 epidermis development amigo.geneontol...
GO GO:0022610 View Gene Set 0.0001111 828 0.009574 152 biological adhesion amigo.geneontol...
GO GO:0030665 View Gene Set 0.0001103 79 0.009574 152 clathrin coated vesicle membrane amigo.geneontol...
GO GO:0008286 View Gene Set 0.0001124 54 0.009622 156 insulin receptor signaling pathway amigo.geneontol...
GO GO:0006816 View Gene Set 0.000115 196 0.009722 157 calcium ion transport amigo.geneontol...
GO GO:0044463 View Gene Set 0.0001146 361 0.009722 157 cell projection part amigo.geneontol...
GO GO:0030100 View Gene Set 0.0001204 76 0.01011 159 regulation of endocytosis amigo.geneontol...
GO GO:0012506 View Gene Set 0.0001214 246 0.01013 160 vesicle membrane amigo.geneontol...
GO GO:0005003 View Gene Set 0.0001229 17 0.0102 161 ephrin receptor activity amigo.geneontol...
GO GO:0031252 View Gene Set 0.0001309 168 0.0108 162 cell leading edge amigo.geneontol...
GO GO:0016469 View Gene Set 0.0001318 46 0.01081 163 proton-transporting two-sector ATPase complex amigo.geneontol...
GO GO:0044262 View Gene Set 0.000137 410 0.01116 164 cellular carbohydrate metabolic process amigo.geneontol...
GO GO:0005792 View Gene Set 0.0001403 244 0.01136 165 microsome amigo.geneontol...
GO GO:0070838 View Gene Set 0.0001421 203 0.01143 166 divalent metal ion transport amigo.geneontol...
GO GO:0016787 View Gene Set 0.0001435 2285 0.01148 167 hydrolase activity amigo.geneontol...
GO GO:0030182 View Gene Set 0.0001518 546 0.01207 168 neuron differentiation amigo.geneontol...
GO GO:0030659 View Gene Set 0.0001616 235 0.01277 169 cytoplasmic vesicle membrane amigo.geneontol...
GO GO:0015662 View Gene Set 0.0001668 53 0.01311 170 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism amigo.geneontol...
GO GO:0015992 View Gene Set 0.0001681 65 0.01313 171 proton transport amigo.geneontol...
GO GO:0006091 View Gene Set 0.0001864 339 0.01448 172 generation of precursor metabolites and energy amigo.geneontol...
GO GO:0008203 View Gene Set 0.0001918 96 0.01481 173 cholesterol metabolic process amigo.geneontol...
GO GO:0008277 View Gene Set 0.0002126 60 0.01586 174 regulation of G-protein coupled receptor protein signaling pathway amigo.geneontol...
GO GO:0016126 View Gene Set 0.0002124 42 0.01586 174 sterol biosynthetic process amigo.geneontol...
GO GO:0031667 View Gene Set 0.0002115 245 0.01586 174 response to nutrient levels amigo.geneontol...
GO GO:0032869 View Gene Set 0.0002088 92 0.01586 174 cellular response to insulin stimulus amigo.geneontol...
GO GO:0043025 View Gene Set 0.00021 182 0.01586 174 neuronal cell body amigo.geneontol...
GO GO:0044297 View Gene Set 0.00021 182 0.01586 174 cell body amigo.geneontol...
GO GO:0006790 View Gene Set 0.0002214 130 0.01643 180 sulfur metabolic process amigo.geneontol...
GO GO:0051056 View Gene Set 0.0002299 272 0.01697 181 regulation of small GTPase mediated signal transduction amigo.geneontol...
GO GO:0009062 View Gene Set 0.0002323 50 0.01706 182 fatty acid catabolic process amigo.geneontol...
GO GO:0008289 View Gene Set 0.0002365 424 0.01727 183 lipid binding amigo.geneontol...
GO GO:0030234 View Gene Set 0.0002483 874 0.01803 184 enzyme regulator activity amigo.geneontol...
GO GO:0009991 View Gene Set 0.0002581 268 0.01864 185 response to extracellular stimulus amigo.geneontol...
GO GO:0016773 View Gene Set 0.0002627 708 0.01887 186 phosphotransferase activity alcohol group as acceptor amigo.geneontol...
GO GO:0015674 View Gene Set 0.000274 239 0.01947 187 di- tri-valent inorganic cation transport amigo.geneontol...
GO GO:0042598 View Gene Set 0.0002733 251 0.01947 187 vesicular fraction amigo.geneontol...
GO GO:0003001 View Gene Set 0.0002794 187 0.01958 189 generation of a signal involved in cell-cell signaling amigo.geneontol...
GO GO:0023061 View Gene Set 0.0002794 187 0.01958 189 signal release amigo.geneontol...
GO GO:0005856 View Gene Set 0.0002802 1410 0.01958 189 cytoskeleton amigo.geneontol...
GO GO:0046961 View Gene Set 0.0002814 19 0.01958 189 proton-transporting ATPase activity rotational mechanism amigo.geneontol...
GO GO:0005932 View Gene Set 0.0003023 38 0.02093 193 microtubule basal body amigo.geneontol...
GO GO:0071212 View Gene Set 0.0003066 723 0.02111 194 subsynaptic reticulum amigo.geneontol...
GO GO:0007167 View Gene Set 0.0003117 475 0.02135 195 enzyme linked receptor protein signaling pathway amigo.geneontol...
GO GO:0044242 View Gene Set 0.0003133 98 0.02135 195 cellular lipid catabolic process amigo.geneontol...
GO GO:0030662 View Gene Set 0.0003266 105 0.02215 197 coated vesicle membrane amigo.geneontol...
GO GO:0055114 View Gene Set 0.000335 647 0.02261 198 oxidation reduction amigo.geneontol...
GO GO:0050662 View Gene Set 0.0003436 176 0.02307 199 coenzyme binding amigo.geneontol...
GO GO:0007398 View Gene Set 0.0003491 218 0.02332 200 ectoderm development amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr19p13 View Gene Set 0.0001824 514 0.04175 1 Genes in cytogenetic band chr19p13 www.broad.mit.e...
Broad chr16p13 View Gene Set 0.0002561 254 0.04175 1 Genes in cytogenetic band chr16p13 www.broad.mit.e...
Broad chr17q25 View Gene Set 0.0004038 172 0.04388 3 Genes in cytogenetic band chr17q25 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 6.464e-49 399 1.546e-45 1 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 1.365e-41 268 1.633e-38 2 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 1.622e-27 1582 1.293e-24 3 Genes up-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad PEREZ_TP53_TARGETS View Gene Set 2.281e-21 1066 1.364e-18 4 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of TP53 [Gene ID=7157] off adenoviral vector. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_UP View Gene Set 1.825e-20 178 8.73e-18 5 Genes up-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad PEREZ_TP63_TARGETS View Gene Set 4.027e-18 328 1.605e-15 6 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vector. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 View Gene Set 4.87e-17 681 1.664e-14 7 The 'group 3 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN View Gene Set 2.261e-16 224 6.76e-14 8 Genes down-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5 View Gene Set 1.239e-15 446 3.294e-13 9 The 'group 5 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 but not ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_UP View Gene Set 6.842e-14 413 1.637e-11 10 Genes up-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 2.178e-13 517 4.737e-11 11 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad NAGASHIMA_NRG1_SIGNALING_UP View Gene Set 2.403e-13 171 4.79e-11 12 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [Gene ID=3084]. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 3.114e-13 453 5.729e-11 13 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 1.879e-12 504 3.21e-10 14 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_DN View Gene Set 3.502e-12 664 5.584e-10 15 Genes down-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad MASSARWEH_TAMOXIFEN_RESISTANCE_UP View Gene Set 7.407e-12 531 1.107e-09 16 Genes up-regulated in breast cancer tumors (formed by MCF-7 xenografts) resistant to tamoxifen [PubChem=5376]. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_UP View Gene Set 8.924e-12 99 1.256e-09 17 Genes up-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 9.848e-12 422 1.309e-09 18 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_UP View Gene Set 1.204e-11 163 1.515e-09 19 Genes up-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN View Gene Set 5.695e-11 306 6.811e-09 20 Genes down-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 9.304e-10 301 1.06e-07 21 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad PEREZ_TP53_AND_TP63_TARGETS View Gene Set 1.342e-09 187 1.459e-07 22 Genes up-regulated in HMEC cells (primary mammary epithelium) upon expression of both of TP53 [Gene ID=7157] and the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vectors. www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN View Gene Set 2.241e-09 361 2.331e-07 23 Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors. www.broad.mit.e...
Broad RIGGI_EWING_SARCOMA_PROGENITOR_UP View Gene Set 6.177e-09 399 5.91e-07 24 Genes up-regulated in mesenchymal stem cells (MSC) engineered to express EWS-FLI1 [Gene ID=2130 2321] fusion protein. www.broad.mit.e...
Broad UZONYI_RESPONSE_TO_LEUKOTRIENE_AND_THROMBIN View Gene Set 6.115e-09 37 5.91e-07 24 Genes up-regulated in HUVEC cells (primary endothelium) after stimulation with leukotriene LTD4 [PubChem=3908] or thrombin (F2) [Gene ID=2147] for 1 h. www.broad.mit.e...
Broad GARY_CD5_TARGETS_UP View Gene Set 7.144e-09 463 6.572e-07 26 Genes up-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_UP View Gene Set 8.895e-09 96 7.881e-07 27 Genes up-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 1.179e-08 944 1.008e-06 28 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_UP View Gene Set 1.412e-08 157 1.165e-06 29 Genes up-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 1.628e-08 783 1.298e-06 30 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_DN View Gene Set 1.824e-08 230 1.363e-06 31 Genes down-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad WAMUNYOKOLI_OVARIAN_CANCER_LMP_UP View Gene Set 1.781e-08 244 1.363e-06 31 Genes up-regulated in mucinous ovarian carcinoma tumors of low malignant potential (LMP) compared to normal ovarian surface epithelium tissue. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_BY_DMOG_UP View Gene Set 1.903e-08 125 1.38e-06 33 Genes up-regulated in MCF7 cells (breast cancer) treated with hypoxia mimetic DMOG [PubChem=3080614]. www.broad.mit.e...
Broad KOBAYASHI_RESPONSE_TO_ROMIDEPSIN View Gene Set 5.133e-08 19 3.611e-06 34 Genes up-regulated in MM-LH cells (malignant melanoma) after treatment with the HDAC inhibitor romidepsin (FK228) [PubChem=5352062]. www.broad.mit.e...
Broad GOZGIT_ESR1_TARGETS_DN View Gene Set 6.858e-08 710 4.687e-06 35 Genes down-regulated in TMX2-28 cells (breast cancer) which do not express ESR1 [Gene ID=2099]) compared to the parental MCF7 cells which do. www.broad.mit.e...
Broad ELVIDGE_HIF1A_AND_HIF2A_TARGETS_DN View Gene Set 7.184e-08 100 4.773e-06 36 Genes down-regulated in MCF7 cells (breast cancer) after knockdown of both HIF1A and HIF2A [Gene ID=3091 2034] by RNAi. www.broad.mit.e...
Broad DOANE_RESPONSE_TO_ANDROGEN_UP View Gene Set 7.954e-08 175 4.879e-06 37 Genes up-regulated in MDA-MB-453 cells (class A ER(-) [Gene ID=2099] breast cancer) after exposure to the androgen R1881 [PubChem=13766]. www.broad.mit.e...
Broad DELYS_THYROID_CANCER_UP View Gene Set 7.756e-08 397 4.879e-06 37 Genes up-regulated in papillary thyroid carcinoma (PTC) compared to normal tissue. www.broad.mit.e...
Broad TAVOR_CEBPA_TARGETS_UP View Gene Set 7.606e-08 45 4.879e-06 37 Genes up-regulated in KCL22 cells (chronic myelogenous leukemia CML with BCR-ABL1 [GeneID=613 25] fusion) by expression of CEBPA [GeneID=1050]. www.broad.mit.e...
Broad DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP View Gene Set 9.664e-08 317 5.779e-06 40 Genes up-regulated in mARMS (molecular ARMS) compared to the mERMS (molecular ERMS) class of rhabdomyosarcoma tumors. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_DN View Gene Set 1.111e-07 87 6.485e-06 41 Genes down-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S3 View Gene Set 1.283e-07 266 7.309e-06 42 Genes from 'subtype S3' signature of hepatocellular carcinoma (HCC): hepatocyte differentiation. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 1.493e-07 583 8.306e-06 43 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 1.535e-07 296 8.347e-06 44 Genes down-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP View Gene Set 1.61e-07 228 8.557e-06 45 Genes up-regulated in SH-SY5Y cells (neuroblastoma) after treatment with epoxomicin [PubChem=3035402] a protease inhibitor causing apoptosis. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_DN View Gene Set 1.83e-07 235 9.515e-06 46 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad SATO_SILENCED_BY_DEACETYLATION_IN_PANCREATIC_CANCER View Gene Set 3.258e-07 48 1.658e-05 47 50 most interesting genes up-regulated in pancreatic cancer cell lines (AsPC1 Hs766T MiaPaCa2 Panc1) but not in the non-neoplastic cells (HPDE) by TSA [PubChem=5562]. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_DN View Gene Set 3.345e-07 607 1.667e-05 48 Transcripts depleted from pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 4.092e-07 140 1.997e-05 49 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad MANALO_HYPOXIA_UP View Gene Set 4.525e-07 197 2.129e-05 50 Genes up-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad AMBROSINI_FLAVOPIRIDOL_TREATMENT_TP53 View Gene Set 4.539e-07 108 2.129e-05 50 Genes down-regulated by flavopiridol [PubChem=5287969] in the HCT116 cells (colon cancer) depending on their TP53 [Gene ID=7157] status: wild-type vs loss of the gene's function (LOF). www.broad.mit.e...
Broad UEDA_PERIFERAL_CLOCK View Gene Set 5.756e-07 146 2.648e-05 52 Molecular timetable composed of 162 time-indicating genes (182 probes) in the peripheral (liver) clock. www.broad.mit.e...
Broad PARENT_MTOR_SIGNALING_UP View Gene Set 6.452e-07 541 2.912e-05 53 Genes up-regulated in HepaRG cells (liver cancer) expressing constituvely active form of MTOR [Gene ID=2475]. www.broad.mit.e...
Broad LE_EGR2_TARGETS_DN View Gene Set 6.662e-07 100 2.951e-05 54 Genes down-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959]. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 8.624e-07 353 3.751e-05 55 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad NAGASHIMA_EGF_SIGNALING_UP View Gene Set 9.041e-07 57 3.862e-05 56 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with EGF [Gene ID=1950]. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_UP View Gene Set 9.949e-07 249 4.175e-05 57 Genes up-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad SENGUPTA_EBNA1_ANTICORRELATED View Gene Set 1.199e-06 156 4.946e-05 58 Genes whose reduced expression in nasopharyngeal carinoma (NPC) correlated most with the increased expression of EBNA1 [Gene ID=3783774] a latent gene of Epstein-Barr virus (EBV). www.broad.mit.e...
Broad CHIBA_RESPONSE_TO_TSA View Gene Set 1.31e-06 38 5.312e-05 59 Genes up-regulated in more than one of several human hepatoma cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad WINTER_HYPOXIA_METAGENE View Gene Set 1.364e-06 216 5.437e-05 60 Genes regulated by hypoxia based on literature searches. www.broad.mit.e...
Broad SMID_BREAST_CANCER_ERBB2_UP View Gene Set 1.484e-06 138 5.82e-05 61 Genes up-regulated in the erbb2 subype of breast cancer samples characterized by higher expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP View Gene Set 1.788e-06 365 6.898e-05 62 Genes distinguishing in multiple myeloma (MM) samples with higher expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad BENPORATH_ES_WITH_H3K27ME3 View Gene Set 2.052e-06 1094 7.67e-05 63 Set 'H3K27 bound': genes posessing the trimethylated H3K27 (H3K27me3) mark in their promoters in human embryonic stem cells as identified by ChIP on chip. www.broad.mit.e...
Broad SATO_SILENCED_BY_METHYLATION_IN_PANCREATIC_CANCER_1 View Gene Set 2.036e-06 407 7.67e-05 63 Genes up-regulated in the pancreatic cancer cell lines (AsPC1 Hs766T MiaPaCa2 Panc1) but not in the non-neoplastic cells (HPDE) by decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_UP View Gene Set 2.354e-06 16 8.664e-05 65 Genes up-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_DN View Gene Set 3.052e-06 516 0.0001106 66 Genes down-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad CAIRO_LIVER_DEVELOPMENT_DN View Gene Set 3.171e-06 208 0.0001132 67 Genes down-regulated at early fetal liver stage (embryonic days E11.5 - E12.5) compared to the late fetal liver stage (embryonic days E14.5 - E16.5). www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_UP View Gene Set 3.434e-06 55 0.0001208 68 Common up-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad ZHANG_TARGETS_OF_EWSR1_FLI1_FUSION View Gene Set 3.55e-06 84 0.0001231 69 Genes up-regulated in RD-EF cells (rhabdomyosarcoma) engineered to express EWSR1-FLI1 fusion [Gene ID=2130 2313] and which are also highly expressed in Ewing's famliy tumors. www.broad.mit.e...
Broad HESS_TARGETS_OF_HOXA9_AND_MEIS1_DN View Gene Set 4.027e-06 70 0.0001376 70 Genes down-regulated in hematopoietic precursor cells conditionally expressing HOXA9 and MEIS1 [Gene ID=3205 4211]. www.broad.mit.e...
Broad DIRMEIER_LMP1_RESPONSE_EARLY View Gene Set 4.38e-06 54 0.0001476 71 Clusters 1 and 2: genes up-regulated in B2264-19/3 cells (primary B lymphocytes) within 30-60 min after activation of LMP1 (an oncogene encoded by Epstein???Barr virus EBV). www.broad.mit.e...
Broad MAHADEVAN_RESPONSE_TO_MP470_DN View Gene Set 4.784e-06 16 0.0001589 72 Top genes up-regulated in the GIST (gastrointestinal stromal tumor) cell line sensitive to imatinib [PubChem=5291] after treatment with MP470 a protein kinase inhibitor. www.broad.mit.e...
Broad KERLEY_RESPONSE_TO_CISPLATIN_UP View Gene Set 5.058e-06 38 0.0001657 73 Genes genes up-regulated in NT2/D1 cells (embryonal carcinoma) in response to treatment with cisplatin [PubChem=2767]. www.broad.mit.e...
Broad SUNG_METASTASIS_STROMA_UP View Gene Set 5.43e-06 106 0.0001755 74 Genes up-regulated in metastatic vs non-metastatic stromal cells originated from either bone or prostate tissues. www.broad.mit.e...
Broad LIU_CMYB_TARGETS_UP View Gene Set 5.772e-06 158 0.0001817 75 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad JAEGER_METASTASIS_DN View Gene Set 5.729e-06 252 0.0001817 75 Genes down-regulated in metastases from malignant melanoma compared to the primary tumors. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2B View Gene Set 6.075e-06 384 0.0001887 77 Genes specifically up-regulated in Cluster IIb of urothelial cell carcinom (UCC) tumors. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_UP View Gene Set 6.414e-06 145 0.0001942 78 Genes up-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_CTNNB1_DN View Gene Set 6.336e-06 144 0.0001942 78 Top 200 marker genes down-regulated in the 'CTNNB1' subclass of hepatocellular carcinoma (HCC); characterized by activated CTNNB1 [Gene ID=1499]. www.broad.mit.e...
Broad HAN_SATB1_TARGETS_DN View Gene Set 6.546e-06 320 0.0001957 80 Genes down-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_60_MCF10A View Gene Set 6.654e-06 56 0.0001965 81 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad GAJATE_RESPONSE_TO_TRABECTEDIN_UP View Gene Set 6.754e-06 53 0.000197 82 Genes up-regulated in HeLa cells (cervical carcinoma) by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_UP View Gene Set 7.331e-06 348 0.0002113 83 Genes up-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad CHIBA_RESPONSE_TO_TSA_UP View Gene Set 7.55e-06 43 0.000215 84 Cancer related genes up-regulated in any of four hepatoma cell lines following 24 h treatment with TSA [PubChem=5562]. www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_UP View Gene Set 8.696e-06 175 0.0002447 85 Genes up-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 8.905e-06 436 0.0002477 86 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad COULOUARN_TEMPORAL_TGFB1_SIGNATURE_DN View Gene Set 9.543e-06 118 0.0002624 87 'Early-TGFB1 signature': genes overexpressed in primary hepatocytes at an early phase of TGFB1 [Gene ID=7040] treatment; is associated with a less invasive phenotype. www.broad.mit.e...
Broad LENAOUR_DENDRITIC_CELL_MATURATION_UP View Gene Set 9.792e-06 92 0.0002662 88 Genes up-regulated during in vitro maturation of CD14+ [Gene ID=929] monocytes (day 0) into immature (day 7) and mature dendritic cells (day 14). www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_UP View Gene Set 1.001e-05 131 0.0002691 89 Genes up-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_UP View Gene Set 1.113e-05 162 0.0002959 90 Genes up-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad MURATA_VIRULENCE_OF_H_PILORI View Gene Set 1.209e-05 16 0.0003178 91 Selected genes up-regulated in WT-A10 cells (gastric epithelium) expressing the H. pilori virulence gene CagA. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 1.377e-05 368 0.0003579 92 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_APOCRINE VS LUMINAL View Gene Set 1.53e-05 312 0.0003934 93 Genes which best discriminate between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: apocrine (ESR1- AR+) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_UP View Gene Set 1.603e-05 65 0.000408 94 Genes up-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad ENGELMANN_CANCER_PROGENITORS_DN View Gene Set 1.686e-05 69 0.0004245 95 Down-regulated genes in the cancer progenitor (stem) cells corresponding to side population (SP) MCF7 cells (breast cancer) positive for MUC1 [Gene ID=4582]. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_DN View Gene Set 1.707e-05 264 0.0004254 96 Genes down-regulated in hepatoblastoma samples compared to normal liver tissue. www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_DN View Gene Set 1.849e-05 217 0.0004559 97 Genes down-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones. www.broad.mit.e...
Broad WANG_BARRETTS_ESOPHAGUS_UP View Gene Set 2.228e-05 46 0.0005439 98 Genes up-regulated in Barrett's esophagus compared to the normal tissue. www.broad.mit.e...
Broad KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP View Gene Set 2.368e-05 126 0.000563 99 Genes up-regulated in glioma cell lines treated with both decitabine [PubChem=451668] and TSA [PubChem=5562]. www.broad.mit.e...
Broad HUTTMANN_B_CLL_POOR_SURVIVAL_UP View Gene Set 2.377e-05 268 0.000563 99 Up-regulated genes in B-CLL (B-cell chronic leukemia) patients expressing high levels of ZAP70 and CD38 [Gene ID=7535 952] which are associated with poor survival. www.broad.mit.e...
Broad RODRIGUES_DCC_TARGETS_DN View Gene Set 2.364e-05 121 0.000563 99 Genes down-regulated in HCT8/S1 cells (colon cancer) which normally lack DCC [Gene ID=9423] compared to those stably expressing wild type DCC off a plasmid vector. www.broad.mit.e...
Broad JIANG_HYPOXIA_NORMAL View Gene Set 2.558e-05 213 0.0006 102 Genes up-regulated in RPTEC cells (normal kidney) by hypoxia. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_UP View Gene Set 2.712e-05 208 0.0006298 103 Genes up-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK). www.broad.mit.e...
Broad DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_UP View Gene Set 2.977e-05 247 0.0006847 104 Genes up-regulated in RD cells (embryonal rhabdomyosarcoma ERMS) by expression of PAX3- or PAX7-FOXO1 [Gene ID=5077 5081 2308] fusions off retroviral vectors. www.broad.mit.e...
Broad MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_DN View Gene Set 3.073e-05 64 0.0007 105 Down-regulated 'cooperation response genes': responded synergystically to the combination of mutant TP53 [Gene ID=7157] and HRAS [Gene ID=3265] in YAMC cells (colon). www.broad.mit.e...
Broad DASU_IL6_SIGNALING_UP View Gene Set 3.4e-05 56 0.0007673 106 Genes up-regulated in normal fibroblasts in response to IL6 [Gene ID=3569]. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_UP View Gene Set 3.503e-05 401 0.0007769 107 Genes up-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad CREIGHTON_AKT1_SIGNALING_VIA_MTOR_UP View Gene Set 3.512e-05 34 0.0007769 107 Genes in the AKT1 [Gene ID=207] pathway which are independent of MTOR [Gene ID=2475] insensitive to RAD001 (everolimus) [PubChem=6442177]. www.broad.mit.e...
Broad MENSE_HYPOXIA_UP View Gene Set 3.54e-05 94 0.0007769 107 Hypoxia response genes in both astrocytes and HeLa cell line. www.broad.mit.e...
Broad WANG_HCP_PROSTATE_CANCER View Gene Set 3.701e-05 82 0.0008048 110 Genes with the high-CpG-density promoters (HCP) that were up-regulated in 1542-CP3TX cells (prostate cancer) compared to 1542-NPTX (normal prostate). www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_UP View Gene Set 3.984e-05 155 0.0008585 111 Genes up-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_DN View Gene Set 4.497e-05 397 0.0009605 112 Genes down-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4 View Gene Set 4.774e-05 189 0.00101 113 Cluster 4 of method A: up-regulation of these genes in patients with non-small cell lung cancer (NSCLC) predicts good survival outcome. www.broad.mit.e...
Broad LEE_TARGETS_OF_PTCH1_AND_SUFU_UP View Gene Set 4.831e-05 77 0.001014 114 Genes up-regulated in medulloblastoma tumors from animals with inactivating mutations of one copy of PTCH1 or SUFU [Gene ID=5727 51684] in conjunction with TP53 [Gene ID=7157] loss. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP View Gene Set 4.877e-05 716 0.001014 115 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_DN View Gene Set 5.062e-05 158 0.001044 116 Down-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad ACEVEDO_METHYLATED_IN_LIVER_CANCER_UP View Gene Set 5.215e-05 2268 0.001057 117 Genes whose DNA is hypo-methylated in hepatocellular carcinoma (HCC) compared to normal liver. www.broad.mit.e...
Broad CHEN_LVAD_SUPPORT_OF_FAILING_HEART_UP View Gene Set 5.176e-05 100 0.001057 117 Up-regulated genesin the left ventricle myocardium of patients with heart failure following implantation of LVAD (left ventricular assist device). www.broad.mit.e...
Broad HENDRICKS_SMARCA4_TARGETS_UP View Gene Set 5.812e-05 49 0.001168 119 Genes up-regulated in ALAB cells (breast cancer) upon reintroduction of SMARCA4 [Gene ID=6597] expressed off adenoviral vector. www.broad.mit.e...
Broad KONDO_COLON_CANCER_HCP_WITH_H3K27ME1 View Gene Set 7.106e-05 24 0.001416 120 Genes with high levels of histone H3 monomethylation mark at K27 (H3K27me1) in SW48 cells (colon cancer) by ChIP-chip assay on a 12K CpG array (CpG promoters only HCP=high-CpG-density promoters). www.broad.mit.e...
Broad GENTILE_UV_LOW_DOSE_DN View Gene Set 7.271e-05 18 0.001426 121 Selected genes down-regulated in WS1 (fibroblast) in response to irradiation with low dose UV-C. www.broad.mit.e...
Broad GENTILE_UV_LOW_DOSE_UP View Gene Set 7.271e-05 18 0.001426 121 Selected genes up-regulated in WS1 (fibroblast) in response to irradiation with low dose UV-C. www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_4_5WK_UP View Gene Set 7.678e-05 243 0.001493 123 Genes up-regulated during pubertal mammary gland development between week 4 and 5. www.broad.mit.e...
Broad MCLACHLAN_DENTAL_CARIES_DN View Gene Set 7.786e-05 234 0.001502 124 Genes down-regulated in pulpal tissue extracted from carious teeth. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN View Gene Set 8.245e-05 485 0.001578 125 Genes down-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad PICCALUGA_ANGIOIMMUNOBLASTIC_LYMPHOMA_DN View Gene Set 9.337e-05 123 0.001773 126 Down-regulated genes in angioimmunoblastic lymphoma (AILT) compared to normal T lymphocytes. www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_CDC25_DN View Gene Set 9.912e-05 140 0.001848 127 Genes down-regulated in reverted NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845] which then reverted to normal cells upon stable over-expression of a dominant negative form of CDC25 [Gene ID=5923]) vs normal fibroblasts. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 9.838e-05 402 0.001848 127 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_DN View Gene Set 9.965e-05 223 0.001848 127 Genes down-regulated in peripheral blood monocytes by HGF [Gene ID=3082]. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 0.0001022 182 0.00188 130 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_UP View Gene Set 0.0001066 41 0.001936 131 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage. www.broad.mit.e...
Broad SMID_BREAST_CANCER_RELAPSE_IN_BRAIN_DN View Gene Set 0.0001068 81 0.001936 131 Genes down-regulated in brain relapse of breast cancer. www.broad.mit.e...
Broad GESERICK_TERT_TARGETS_DN View Gene Set 0.0001086 20 0.001953 133 Genes down-regulated in MEF cells (embryonic fibroblasts) with TERT [Gene ID=7015] knockout after expression of the gene off a retroviral vector. www.broad.mit.e...
Broad KIM_WT1_TARGETS_8HR_UP View Gene Set 0.0001124 160 0.002007 134 Genes up-regulated in UB27 cells (osteosarcoma) at 8 hr after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad HOOI_ST7_TARGETS_DN View Gene Set 0.0001195 108 0.002103 135 Genes down-regulated in PC-3 cells (prostate cancer) stably expressing ST7 [Gene ID=7982] off a plasmid vector. www.broad.mit.e...
Broad VALK_AML_CLUSTER_8 View Gene Set 0.0001195 23 0.002103 135 Top 40 genes from cluster 8 of aculte myeloid leukemia (AML) expression profile; 69% of the samples are FAB M2 subtype. www.broad.mit.e...
Broad GERY_CEBP_TARGETS View Gene Set 0.0001245 115 0.002161 137 Genes changed in NIH 3T3 cells (embryonic fibroblast) by expression of one or more of C/EBP proteins: CEBPA CEBPB CEBPG and CEBPD [Gene ID=1050 1051 1054 1052]. www.broad.mit.e...
Broad BASSO_CD40_SIGNALING_UP View Gene Set 0.0001247 100 0.002161 137 Gene changed by CD40 [Gene ID=958] signaling in Ramos cells (EBV negative Burkitt lymphoma). www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP View Gene Set 0.0001359 178 0.002339 139 Genes up-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_DN View Gene Set 0.0001452 446 0.002459 140 Genes down-regulated in prostate cancer samples. www.broad.mit.e...
Broad RODRIGUES_NTN1_TARGETS_DN View Gene Set 0.0001468 151 0.002459 140 Genes down-regulated in HCT8/S11 cells (colon cancer) engineered to stably express NTN1 [Gene ID=1630] off a plasmid vector. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP View Gene Set 0.000147 224 0.002459 140 Genes up-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_DN View Gene Set 0.000147 224 0.002459 140 Genes down-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad DORSAM_HOXA9_TARGETS_DN View Gene Set 0.0001506 29 0.002501 144 HOXA9 [Gene ID=3205] targets down-regulated in hematopoietic stem cells. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_20HR_UP View Gene Set 0.000153 223 0.002524 145 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 20 h time point that were not up-regulated at the previous time point 18 h. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_60_MCF10A View Gene Set 0.0001553 38 0.002544 146 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad ZHAN_V1_LATE_DIFFERENTIATION_GENES_UP View Gene Set 0.0001657 31 0.002679 147 The v1LDG set: most variable late differentiation genes (LDG) with similar expression patterns in tonsil plasma cells (TPC) and multiple myeloma (MM) samples. www.broad.mit.e...
Broad DANG_REGULATED_BY_MYC_DN View Gene Set 0.0001656 242 0.002679 147 Genes down-regulated by MYC [Gene ID=4609] according to the MYC Target Gene Database. www.broad.mit.e...
Broad EBAUER_TARGETS_OF_PAX3_FOXO1_FUSION_UP View Gene Set 0.0001697 201 0.002699 149 Genes up-regulated in Rh4 cells (alveolar rhabdomyosarcoma ARMS) after knockdown of the PAX3-FOXO1 [Gene iD=5077 2308] fusion protein by RNAi for 72 hr. www.broad.mit.e...
Broad SMITH_TERT_TARGETS_DN View Gene Set 0.0001692 71 0.002699 149 Genes consistently down-regulated in HMEC cells (primary mammary epithelium) upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad HAN_SATB1_TARGETS_UP View Gene Set 0.0001704 303 0.002699 149 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad KIM_WT1_TARGETS_UP View Gene Set 0.0001999 207 0.003145 152 Genes up-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad LEE_LIVER_CANCER_HEPATOBLAST View Gene Set 0.0002028 15 0.003171 153 Fig.5 Supplementary Fig.2 Genes overexpressed in human hepatocellular carcinoma with hepatoblast property www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_UP View Gene Set 0.0002122 70 0.003279 154 Genes up-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI (TNFRSF13B) [Gene ID=23495]. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_CHEMOTAXIS_DN View Gene Set 0.0002125 430 0.003279 154 Transcripts depleted in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988]. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_60_HELA View Gene Set 0.0002155 43 0.003305 156 Genes whose expression peaked at 60 min after stimulation of HeLa cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_UP View Gene Set 0.0002187 284 0.003314 157 Genes up-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_UP View Gene Set 0.0002189 394 0.003314 157 Genes up-regulated in peripheral blood mononucleocytes by HGF [Gene ID=3082] compared to those regulated by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_30MIN_UP View Gene Set 0.0002228 53 0.003352 159 Genes up-regulated in primary fibroblast cell culture at 30 min time point after infection with HCMV (AD169 strain). www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G2 View Gene Set 0.0002252 21 0.003367 160 Cluster G2: genes increasingly up-regulated in NHEK cells (normal keratinocyte) and reaching maximum levels at 12 h and 24 h after UV-B irradiation. www.broad.mit.e...
Broad SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_DN View Gene Set 0.0002297 83 0.003413 161 Genes down-regulated in invasive ductal carcinoma (IDC) relative to ductal carcinoma in situ (DCIS non-invasive). www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_7 View Gene Set 0.0002415 20 0.003522 162 Cluster 7: selected apocrine and luminal genes clustered together across breast cancer samples. www.broad.mit.e...
Broad YAGI_AML_FAB_MARKERS View Gene Set 0.0002399 189 0.003522 162 Genes specifically expressed in FAB subtypes M2 M4 M5 and M7 of pediatric AML (acute myeloid leukemia). www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_UP View Gene Set 0.0002408 95 0.003522 162 Genes commonly up-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad PARK_TRETINOIN_RESPONSE_AND_PML_RARA_FUSION View Gene Set 0.0002447 25 0.003547 165 Genes up-regulated by tretinoin (all-trans retinoic acid ATRA) [PubChem=5538] in U937 cells (acute promyelocytic leukemia APL) made sensitive to the drug by expression of the PML-RARA fusion [Gene ID = 5371 5914]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_UP View Gene Set 0.0002553 114 0.003678 166 Genes up-regulated in basal-like breast cancer cell lines as compared to the mesenchymal-like ones. www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G24 View Gene Set 0.0002768 18 0.003965 167 Cluster G24: genes induced in NHEK (normal keratinocyte) but not in SCC12B2 cells (squamous cell carcinoma) by UV-B radiation. www.broad.mit.e...
Broad DOANE_BREAST_CANCER_ESR1_UP View Gene Set 0.0002787 104 0.003968 168 Genes changed in breast cancer samples according to the ESR1 [Gene ID=2099] status: ER positive vs ER negative tumors. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_1 View Gene Set 0.0002937 67 0.004158 169 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 1. www.broad.mit.e...
Broad POOLA_INVASIVE_BREAST_CANCER_DN View Gene Set 0.0002956 130 0.004159 170 Genes down-regulated in atypical ductal hyperplastic tissues from patients with (ADHC) breast cancer vs those without the cancer (ADH). www.broad.mit.e...
Broad SMID_BREAST_CANCER_RELAPSE_IN_BONE_UP View Gene Set 0.000317 95 0.004434 171 Genes up-regulated in bone relapse of breast cancer. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN View Gene Set 0.0003258 431 0.004531 172 Genes down-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad XU_HGF_SIGNALING_NOT_VIA_AKT1_48HR_UP View Gene Set 0.0003451 34 0.004744 173 Genes up-regulated in DU-145 cells (prostate cancer) in the absence and presence of a dominant negative form of AKT1 [Gene ID=207] upon exposure to HGF [Gene ID=3082] for 48 hr. www.broad.mit.e...
Broad LIN_SILENCED_BY_TUMOR_MICROENVIRONMENT View Gene Set 0.0003439 100 0.004744 173 Genes downregulated in MCF10A cells (breast cancer) co-cultured with cancer-associated fibroblasts (CAF). www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_16P13_AMPLICON View Gene Set 0.00036 115 0.004921 175 Genes within amplicon 16p13 identified in a study of 191 breast tumor samples. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_10HR_UP View Gene Set 0.0003852 99 0.005235 176 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 10 h time point that were not up-regulated at the previous time point 8 h. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_LATE_RECURRENCE_UP View Gene Set 0.0003892 54 0.00526 177 Genes whose expression correlated with higher risk of late recurrence of hepatocellular carcinoma (HCC). www.broad.mit.e...
Broad LUND_SILENCED_BY_METHYLATION View Gene Set 0.0003987 16 0.005357 178 Genes up-regulated in FE-8 cells (fibroblasts) upon treatment with azacitidine [PubChem=9444]. www.broad.mit.e...
Broad BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN View Gene Set 0.000402 153 0.005372 179 Genes down-regulated in medullary breast cancer (MBC) relative to ductal breast cancer (DBD). www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_MODERATELY_DN View Gene Set 0.000413 109 0.005489 180 Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs moderately differentiated tumors. www.broad.mit.e...
Broad PAPASPYRIDONOS_UNSTABLE_ATEROSCLEROTIC_PLAQUE_UP View Gene Set 0.0004304 49 0.005657 181 Genes up-regulated in unstable ateroslerotic plaques compared to the stable ones. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_DN View Gene Set 0.0004297 301 0.005657 181 Genes down-regulated in peripheral blood monocytes by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad NAKAMURA_METASTASIS_MODEL_DN View Gene Set 0.0004414 41 0.005769 183 Top genes up-regulated in subcutaneous tumors from highly metastatic pancreatic cancer cells. www.broad.mit.e...
Broad PARK_TRETINOIN_RESPONSE_AND_RARA_PLZF_FUSION View Gene Set 0.0004454 18 0.00579 184 Genes up-regulated by tretinoin (all-trans retinoic acid ATRA) [PubChem=5538] in U937 cells (acute promyelocytic leukemia APL) made resistant to the drug by expression of the PLZF-RARA fusion [Gene ID = 7704 5914]. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_40_HELA View Gene Set 0.000479 41 0.006193 185 Genes whose expression peaked at 40 min after stimulation of HeLa cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad KORKOLA_EMBRYONAL_CARCINOMA View Gene Set 0.0004893 10 0.006293 186 Genes predicting the embryonic carcinoma (EC) subtype of nonseminomatous male germ cell tumors (NSGCT). www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 0.0004936 532 0.006314 187 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad APPEL_IMATINIB_RESPONSE View Gene Set 0.000572 33 0.007278 188 Genes up-regulated by imatinib [PubChem ID=5291] during dendritic cell differentiation. www.broad.mit.e...
Broad MASSARWEH_TAMOXIFEN_RESISTANCE_DN View Gene Set 0.0005763 235 0.007293 189 Genes down-regulated in breast cancer tumors (formed by MCF-7 xenografts) resistant to tamoxifen [PubChem=5376]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_0 View Gene Set 0.0005848 69 0.007362 190 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 0. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN View Gene Set 0.0006209 732 0.007735 191 Genes down-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad ROSS_AML_WITH_PML_RARA_FUSION View Gene Set 0.0006197 74 0.007735 191 Top 100 probe sets for pediatric acute myeloid leukemia (AML) subtype t(15;17): has PML RARA fusion [Gene ID=5371 5914]. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_DN View Gene Set 0.000631 125 0.007799 193 Genes down-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad VERRECCHIA_EARLY_RESPONSE_TO_TGFB1 View Gene Set 0.0006326 51 0.007799 193 ECM related genes up-regulated early (within 30 min) in dermal fibroblasts after addition of TGFB1 [Gene ID=7040]. www.broad.mit.e...
Broad MCLACHLAN_DENTAL_CARIES_UP View Gene Set 0.000665 207 0.008157 195 Genes up-regulated in pulpal tissue extracted from carious teeth. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_ESR1_UP View Gene Set 0.0006812 140 0.008271 196 Up-regulated genes from the optimal set of 550 markers discriminating breast cancer samples by ESR1 [Gene ID=2099] expression: ER(+) vs ER(-) tumors. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A5 View Gene Set 0.0006778 62 0.008271 196 Cluster 5 of method A: up-regulation of these genes in patients with non-small cell lung cancer (NSCLC) predicts good survival outcome. www.broad.mit.e...
Broad VART_KSHV_INFECTION_ANGIOGENIC_MARKERS_UP View Gene Set 0.0007195 163 0.008692 198 Angiogenic markers up-regulated in lymph endothelial cells upon infection with KSHV (Kaposi's sarcoma herpes virus). www.broad.mit.e...
Broad SASSON_RESPONSE_TO_FORSKOLIN_UP View Gene Set 0.000726 72 0.008727 199 Genes up-regulated in primary granulosa cells in response to forskolin [PubChem=47936]. www.broad.mit.e...
Broad KAAB_HEART_ATRIUM_VS_VENTRICLE_UP View Gene Set 0.0007321 239 0.008756 200 Genes up-regulated in the atria of healthy hearts compared to venticles. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_LYSOSOME View Gene Set 1.771e-08 122 3.294e-06 1 Lysosome www.broad.mit.e...
Broad KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM View Gene Set 3.005e-07 76 2.795e-05 2 Phosphatidylinositol signaling system www.broad.mit.e...
Broad KEGG_AXON_GUIDANCE View Gene Set 1.983e-06 129 0.000123 3 Axon guidance www.broad.mit.e...
Broad KEGG_STEROID_BIOSYNTHESIS View Gene Set 2.162e-05 17 0.001005 4 Steroid biosynthesis www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION View Gene Set 0.0001776 44 0.00472 5 Valine leucine and isoleucine degradation www.broad.mit.e...
Broad KEGG_INOSITOL_PHOSPHATE_METABOLISM View Gene Set 0.000163 54 0.00472 5 Inositol phosphate metabolism www.broad.mit.e...
Broad KEGG_VIBRIO_CHOLERAE_INFECTION View Gene Set 0.000161 56 0.00472 5 Vibrio cholerae infection www.broad.mit.e...
Broad KEGG_MAPK_SIGNALING_PATHWAY View Gene Set 0.0002267 267 0.004906 8 MAPK signaling pathway www.broad.mit.e...
Broad KEGG_ENDOCYTOSIS View Gene Set 0.0002374 183 0.004906 8 Endocytosis www.broad.mit.e...
Broad KEGG_INSULIN_SIGNALING_PATHWAY View Gene Set 0.0005044 137 0.009382 10 Insulin signaling pathway www.broad.mit.e...
Broad KEGG_ARGININE_AND_PROLINE_METABOLISM View Gene Set 0.001042 54 0.01762 11 Arginine and proline metabolism www.broad.mit.e...
Broad KEGG_CITRATE_CYCLE_TCA_CYCLE View Gene Set 0.001634 32 0.02171 12 Citrate cycle (TCA cycle) www.broad.mit.e...
Broad KEGG_GLYCOSAMINOGLYCAN_BIOSYNTHESIS_HEPARAN_SULFATE View Gene Set 0.001455 26 0.02171 12 Glycosaminoglycan biosynthesis - heparan sulfate www.broad.mit.e...
Broad KEGG_GLYCEROPHOSPHOLIPID_METABOLISM View Gene Set 0.001565 76 0.02171 12 Glycerophospholipid metabolism www.broad.mit.e...
Broad KEGG_NITROGEN_METABOLISM View Gene Set 0.001925 23 0.02238 15 Nitrogen metabolism www.broad.mit.e...
Broad KEGG_ALDOSTERONE_REGULATED_SODIUM_REABSORPTION View Gene Set 0.001907 42 0.02238 15 Aldosterone-regulated sodium reabsorption www.broad.mit.e...
Broad KEGG_SULFUR_METABOLISM View Gene Set 0.002321 13 0.0254 17 Sulfur metabolism www.broad.mit.e...
Broad KEGG_OTHER_GLYCAN_DEGRADATION View Gene Set 0.003146 16 0.03251 18 Other glycan degradation www.broad.mit.e...
Broad KEGG_PPAR_SIGNALING_PATHWAY View Gene Set 0.00374 69 0.03661 19 PPAR signaling pathway www.broad.mit.e...
Broad KEGG_BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS View Gene Set 0.004288 22 0.03798 20 Biosynthesis of unsaturated fatty acids www.broad.mit.e...
Broad KEGG_GNRH_SIGNALING_PATHWAY View Gene Set 0.004278 101 0.03798 20 GnRH signaling pathway www.broad.mit.e...
Broad KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION View Gene Set 0.005063 118 0.0428 22 Leukocyte transendothelial migration www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CHOLESTEROL_BIOSYNTHESIS View Gene Set 6.446e-06 21 0.002772 1 Genes involved in Cholesterol biosynthesis www.broad.mit.e...
Broad REACTOME_TRANSMISSION_ACROSS_CHEMICAL_SYNAPSES View Gene Set 5.343e-05 130 0.01149 2 Genes involved in Transmission across Chemical Synapses www.broad.mit.e...
Broad REACTOME_NEUROTRANSMITTER_RELEASE_CYCLE View Gene Set 0.0001977 28 0.02125 3 Genes involved in Neurotransmitter Release Cycle www.broad.mit.e...
Broad REACTOME_BOTULINUM_NEUROTOXICITY View Gene Set 0.0001729 18 0.02125 3 Genes involved in Botulinum neurotoxicity www.broad.mit.e...
Broad REACTOME_PROTEOLYTIC_CLEAVAGE_OF_SNARE_COMPLEX_PROTEINS View Gene Set 0.0002998 16 0.02578 5 Genes involved in Proteolytic cleavage of SNARE complex proteins www.broad.mit.e...
Broad REACTOME_GLUTAMATE_NEUROTRANSMITTER_RELEASE_CYCLE View Gene Set 0.0005232 15 0.03331 6 Genes involved in Glutamate Neurotransmitter Release Cycle www.broad.mit.e...
Broad REACTOME_HEMOSTASIS View Gene Set 0.0005422 274 0.03331 6 Genes involved in Hemostasis www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GTGCCTT MIR-506 View Gene Set 1.292e-05 605 0.002855 1 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad AGGGCAG MIR-18A View Gene Set 8.933e-05 116 0.009871 2 Targets of MicroRNA AGGGCAG MIR-18A www.broad.mit.e... MIR-18A...
Broad TGGTGCT MIR-29A MIR-29B MIR-29C View Gene Set 0.0003852 436 0.02226 3 Targets of MicroRNA TGGTGCT MIR-29A MIR-29B MIR-29C www.broad.mit.e... MIR-29A... MIR-29B... MIR-29C...
Broad CTATGCA MIR-153 View Gene Set 0.0004429 182 0.02226 3 Targets of MicroRNA CTATGCA MIR-153 www.broad.mit.e... MIR-153...
Broad GGCAGTG MIR-324-3P View Gene Set 0.0005037 82 0.02226 3 Targets of MicroRNA GGCAGTG MIR-324-3P www.broad.mit.e... MIR-324-3P...
Broad CTGAGCC MIR-24 View Gene Set 0.0006974 195 0.02569 6 Targets of MicroRNA CTGAGCC MIR-24 www.broad.mit.e... MIR-24...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CAGGTG_V$E12_Q6 View Gene Set 4.117e-20 1818 2.532e-17 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGGTG which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad GCANCTGNY_V$MYOD_Q6 View Gene Set 8.387e-10 673 2.579e-07 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCANCTGNY which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad CAGCTG_V$AP4_Q5 View Gene Set 2.88e-07 1129 5.905e-05 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGCTG which matches annotation for REPIN1: replication initiator 1 www.broad.mit.e...
Broad CTGCAGY_UNKNOWN View Gene Set 8.907e-07 570 0.000137 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTGCAGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CREB_Q2 View Gene Set 2.264e-06 192 0.0002437 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NSTGACGTAANN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$E2A_Q2 View Gene Set 2.377e-06 179 0.0002437 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCACCTGYYNCNKN which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad V$SF1_Q6 View Gene Set 4.318e-06 187 0.0003794 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGRCCTTG which matches annotation for SF1: splicing factor 1 www.broad.mit.e...
Broad CTTTAAR_UNKNOWN View Gene Set 5.375e-06 739 0.0004132 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTTTAAR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E12_Q6 View Gene Set 1.059e-05 191 0.0006514 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RRCAGGTGNCV which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01 View Gene Set 9.677e-06 830 0.0006514 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CREB_Q4 View Gene Set 1.661e-05 188 0.000867 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NSTGACGTMANN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6 View Gene Set 1.692e-05 2120 0.000867 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$MYOD_Q6_01 View Gene Set 1.885e-05 182 0.0008917 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CNGNRNCAGGTGNNGNAN which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$RORA1_01 View Gene Set 2.78e-05 189 0.001137 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NWAWNNAGGTCAN which matches annotation for RORA: RAR-related orphan receptor A www.broad.mit.e...
Broad GGGAGGRR_V$MAZ_Q6 View Gene Set 3.059e-05 1701 0.001137 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAGGRR which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor) www.broad.mit.e...
Broad TGACAGNY_V$MEIS1_01 View Gene Set 3.045e-05 603 0.001137 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACAGNY which matches annotation for MEIS1: Meis1 myeloid ecotropic viral integration site 1 homolog (mouse) www.broad.mit.e...
Broad GGGTGGRR_V$PAX4_03 View Gene Set 3.144e-05 994 0.001137 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGTGGRR which matches annotation for PAX4: paired box gene 4 www.broad.mit.e...
Broad V$SP1_Q6_01 View Gene Set 3.393e-05 163 0.001159 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGGCGGGGC which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad RNGTGGGC_UNKNOWN View Gene Set 4.231e-05 557 0.00137 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RNGTGGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYOD_Q6 View Gene Set 5.269e-05 187 0.00162 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCACCTGNY which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$E47_01 View Gene Set 7.791e-05 201 0.002282 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VSNGCAGGTGKNCNN which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad TGGNNNNNNKCCAR_UNKNOWN View Gene Set 8.183e-05 314 0.002288 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGGNNNNNNKCCAR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NF1_Q6 View Gene Set 8.774e-05 206 0.002342 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNTTGGCNNNNNNCCNNN which matches annotation for NF1: neurofibromin 1 (neurofibromatosis von Recklinghausen disease Watson disease) www.broad.mit.e...
Broad CYTAGCAAY_UNKNOWN View Gene Set 0.0001028 105 0.002342 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CYTAGCAAY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYOGENIN_Q6 View Gene Set 9.21e-05 187 0.002342 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RGCAGSTG which matches annotation for MYOG: myogenin (myogenic factor 4) www.broad.mit.e...
Broad V$CREB_Q4_01 View Gene Set 0.0001002 159 0.002342 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CNNTGACGTMA which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad GGGYGTGNY_UNKNOWN View Gene Set 9.883e-05 487 0.002342 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGGYGTGNY. Motif does not match any known transcription factor www.broad.mit.e...
Broad GATAAGR_V$GATA_C View Gene Set 0.0001126 232 0.002473 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATAAGR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ATF_B View Gene Set 0.0001524 147 0.003232 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NTGACGTCANYS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ATF3_Q6 View Gene Set 0.0001578 193 0.003234 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CBCTGACGTCANCS which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$HEN1_02 View Gene Set 0.0002135 141 0.004235 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGGGNCGCAGCTGCGNCCCNN which matches annotation for NHLH1: nescient helix loop helix 1 www.broad.mit.e...
Broad V$CREB_01 View Gene Set 0.0002204 198 0.004236 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACGTMA which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$GATA_Q6 View Gene Set 0.0003453 159 0.006436 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGATARN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1) www.broad.mit.e...
Broad V$ATF_01 View Gene Set 0.000469 202 0.008242 34 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CNSTGACGTNNNYC. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGACGTCA_V$ATF3_Q6 View Gene Set 0.0004665 176 0.008242 34 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACGTCA which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$TEF1_Q6 View Gene Set 0.0005551 167 0.009484 36 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GRRATG. Motif does not match any known transcription factor www.broad.mit.e...
Broad ACAWYAAAG_UNKNOWN View Gene Set 0.0006065 81 0.01008 37 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWYAAAG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$GATA_C View Gene Set 0.0007441 204 0.01204 38 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGATAAGNMNN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1) www.broad.mit.e...
Broad GTGGGTGK_UNKNOWN View Gene Set 0.0008353 224 0.01317 39 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GTGGGTGK. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGGAAA_V$NFAT_Q4_01 View Gene Set 0.0008647 1403 0.0133 40 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGGAAA which matches annotation for NFAT<br> NFATC www.broad.mit.e...
Broad V$TGIF_01 View Gene Set 0.0009337 171 0.01401 41 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AGCTGTCANNA which matches annotation for TGIF: TGFB-induced factor (TALE family homeobox) www.broad.mit.e...
Broad TGACCTY_V$ERR1_Q2 View Gene Set 0.001067 772 0.01562 42 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACCTY which matches annotation for ESRRA: estrogen-related receptor alpha www.broad.mit.e...
Broad V$AP1_C View Gene Set 0.001161 222 0.01587 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGASTCAG which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$AREB6_03 View Gene Set 0.001141 178 0.01587 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VNRCACCTGKNC which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression) www.broad.mit.e...
Broad TGANTCA_V$AP1_C View Gene Set 0.001138 850 0.01587 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGANTCA which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$NFY_01 View Gene Set 0.001216 178 0.01625 46 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNRRCCAATSRGNNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ATF1_Q6 View Gene Set 0.001251 186 0.01636 47 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CYYTGACGTCA which matches annotation for ATF1: activating transcription factor 1 www.broad.mit.e...
Broad V$CREBP1CJUN_01 View Gene Set 0.001325 199 0.01664 48 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACGTYA which matches annotation for JUN: jun oncogene<br> ATF2: activating transcription factor 2 www.broad.mit.e...
Broad TGAYRTCA_V$ATF3_Q6 View Gene Set 0.001313 405 0.01664 48 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAYRTCA which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$SRF_C View Gene Set 0.001425 174 0.01753 50 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif DCCWTATATGGNCWN which matches annotation for SRF: serum response factor (c-fos serum response element-binding transcription factor) www.broad.mit.e...
Broad V$RFX1_01 View Gene Set 0.001462 179 0.01763 51 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGTNRCNWRGYAACNN which matches annotation for RFX1: regulatory factor X 1 (influences HLA class II expression) www.broad.mit.e...
Broad V$SP1_Q2_01 View Gene Set 0.001572 185 0.0186 52 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCCCGCCCCN which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$MIF1_01 View Gene Set 0.001782 123 0.02068 53 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGTTGCWWGGYAACNGS which matches annotation for MIF: macrophage migration inhibitory factor (glycosylation-inhibiting factor) www.broad.mit.e...
Broad V$ISRE_01 View Gene Set 0.001968 171 0.02241 54 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGTTTCWCTTTYCC which matches annotation for STAT1: signal transducer and activator of transcription 1 91kDa<br> STAT2: signal transducer and activator of transcription 2 113kDa www.broad.mit.e...
Broad V$AP4_01 View Gene Set 0.002103 190 0.02302 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGARYCAGCTGYGGNCNK which matches annotation for TFAP4: transcription factor AP-4 (activating enhancer binding protein 4) www.broad.mit.e...
Broad AACTTT_UNKNOWN View Gene Set 0.002133 1437 0.02302 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AACTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NF1_Q6_01 View Gene Set 0.002138 202 0.02302 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGGNNNNNNGCCAANN which matches annotation for NF1: neurofibromin 1 (neurofibromatosis von Recklinghausen disease Watson disease) www.broad.mit.e...
Broad V$CP2_02 View Gene Set 0.002209 178 0.02302 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCTGGNTNGNNCYNG which matches annotation for TFCP2: transcription factor CP2 www.broad.mit.e...
Broad GTGACGY_V$E4F1_Q6 View Gene Set 0.002208 462 0.02302 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GTGACGY which matches annotation for E4F1: E4F transcription factor 1 www.broad.mit.e...
Broad V$CREBP1_Q2 View Gene Set 0.002307 185 0.02325 60 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VGTGACGTMACN which matches annotation for ATF2: activating transcription factor 2 www.broad.mit.e...
Broad V$HNF4_Q6 View Gene Set 0.002287 195 0.02325 60 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AARGTCCAN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha www.broad.mit.e...
Broad V$AREB6_02 View Gene Set 0.002544 189 0.02524 62 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WNWCACCTGWNN which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression) www.broad.mit.e...
Broad V$LMO2COM_02 View Gene Set 0.002898 194 0.027 63 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NMGATANSG which matches annotation for LMO2: LIM domain only 2 (rhombotin-like 1) www.broad.mit.e...
Broad GTTNYYNNGGTNA_UNKNOWN View Gene Set 0.002819 56 0.027 63 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GTTNYYNNGGTNA. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGACATY_UNKNOWN View Gene Set 0.002787 503 0.027 63 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGACATY. Motif does not match any known transcription factor www.broad.mit.e...
Broad YGTCCTTGR_UNKNOWN View Gene Set 0.002893 76 0.027 63 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGTCCTTGR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MEIS1_01 View Gene Set 0.003011 173 0.02763 67 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTGACAGNNN which matches annotation for MEIS1: Meis1 myeloid ecotropic viral integration site 1 homolog (mouse) www.broad.mit.e...
Broad V$ERR1_Q2 View Gene Set 0.003061 193 0.02768 68 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTNAAGGTCANN which matches annotation for ESRRA: estrogen-related receptor alpha www.broad.mit.e...
Broad V$CEBPB_01 View Gene Set 0.003204 198 0.02854 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RNRTKDNGMAAKNN which matches annotation for CEBPB: CCAAT/enhancer binding protein (C/EBP) beta www.broad.mit.e...
Broad V$AR_01 View Gene Set 0.003249 106 0.02854 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGTACANNRTGTTCT which matches annotation for AR: androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) www.broad.mit.e...
Broad V$EVI1_01 View Gene Set 0.003402 12 0.02947 71 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGAYAAGATAAGATAA which matches annotation for EVI1: ecotropic viral integration site 1 www.broad.mit.e...
Broad CTTTGT_V$LEF1_Q2 View Gene Set 0.0035 1458 0.0299 72 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGT which matches annotation for LEF1: lymphoid enhancer-binding factor 1 www.broad.mit.e...
Broad V$LXR_DR4_Q3 View Gene Set 0.004024 64 0.033 73 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACCGNNAGTRACCC which matches annotation for NR1H3: nuclear receptor subfamily 1 group H member 3 www.broad.mit.e...
Broad GGAANCGGAANY_UNKNOWN View Gene Set 0.004012 79 0.033 73 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGAANCGGAANY. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGATTA_V$PITX2_Q2 View Gene Set 0.003944 456 0.033 73 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGATTA which matches annotation for PITX2: paired-like homeodomain transcription factor 2 www.broad.mit.e...
Broad V$SRF_Q5_01 View Gene Set 0.004094 189 0.03313 76 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCAWATAWGGMNMNG which matches annotation for SRF: serum response factor (c-fos serum response element-binding transcription factor) www.broad.mit.e...
Broad V$CREBP1_01 View Gene Set 0.004338 123 0.03465 77 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTACGTAA which matches annotation for ATF2: activating transcription factor 2 www.broad.mit.e...
Broad YATGNWAAT_V$OCT_C View Gene Set 0.004425 289 0.03489 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YATGNWAAT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$LFA1_Q6 View Gene Set 0.005161 186 0.03967 79 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGSTCWR which matches annotation for ITGAL: integrin alpha L (antigen CD11A (p180) lymphocyte function-associated antigen 1; alpha polypeptide) www.broad.mit.e...
Broad WGGAATGY_V$TEF1_Q6 View Gene Set 0.00512 281 0.03967 79 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGGAATGY which matches annotation for TEAD1: TEA domain family member 1 (SV40 transcriptional enhancer factor) www.broad.mit.e...
Broad V$MYOD_01 View Gene Set 0.005315 187 0.04014 81 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SRACAGGTGKYG which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$HEN1_01 View Gene Set 0.005353 154 0.04014 81 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGGNCNCAGCTGCGNCCCNN which matches annotation for NHLH1: nescient helix loop helix 1 www.broad.mit.e...
Broad V$SREBP_Q3 View Gene Set 0.005466 185 0.0405 83 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif VNNVTCACCCYA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$RP58_01 View Gene Set 0.005689 179 0.04165 84 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNAACATCTGGA which matches annotation for ZNF238: zinc finger protein 238 www.broad.mit.e...
Broad TTANTCA_UNKNOWN View Gene Set 0.006093 702 0.04409 85 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTANTCA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SP1_Q6 View Gene Set 0.006814 177 0.04873 86 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGGGGGCGGGGYN which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$SREBP1_02 View Gene Set 0.00699 69 0.04885 87 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif KATCACCCCAC which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad V$AP1_01 View Gene Set 0.006933 204 0.04885 87 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTGAGTCAKCN which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$CEBPA_01 View Gene Set 0.007095 189 0.04903 89 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNATTRCNNAANNN which matches annotation for CEBPA: CCAAT/enhancer binding protein (C/EBP) alpha www.broad.mit.e...
Broad RTAAACA_V$FREAC2_01 View Gene Set 0.007178 697 0.04905 90 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RTAAACA which matches annotation for FOXF2: forkhead box F2 www.broad.mit.e...
Broad V$SREBP1_Q6 View Gene Set 0.007299 195 0.04933 91 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACSCCA which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GNF2_RAB3A View Gene Set 1.407e-06 34 0.0006008 1 Neighborhood of RAB3A www.broad.mit.e...
Broad GNF2_DNM1 View Gene Set 1.743e-05 69 0.003721 2 Neighborhood of DNM1 www.broad.mit.e...
Broad GNF2_MAPT View Gene Set 0.0001387 38 0.01974 3 Neighborhood of MAPT www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 0.0005511 39 0.04707 4 Neighborhood of SIRT2 www.broad.mit.e...
Broad GNF2_SPTA1 View Gene Set 0.0004994 75 0.04707 4 Neighborhood of SPTA1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_11 View Gene Set 4.383e-21 520 1.99e-18 1 Genes in module_11 www.broad.mit.e...
Broad module_66 View Gene Set 1.777e-20 530 4.035e-18 2 Genes in module_66 www.broad.mit.e...
Broad module_100 View Gene Set 5.846e-20 523 8.846e-18 3 Genes in module_100 www.broad.mit.e...
Broad module_137 View Gene Set 8.317e-19 525 9.439e-17 4 Genes in module_137 www.broad.mit.e...
Broad module_6 View Gene Set 3.591e-15 403 3.261e-13 5 Genes in module_6 www.broad.mit.e...
Broad module_2 View Gene Set 9.578e-14 373 7.247e-12 6 Genes in module_2 www.broad.mit.e...
Broad module_88 View Gene Set 3.189e-13 812 2.068e-11 7 Genes in module_88 www.broad.mit.e...
Broad module_38 View Gene Set 1.074e-12 453 5.418e-11 8 Genes in module_38 www.broad.mit.e...
Broad module_60 View Gene Set 9.755e-13 403 5.418e-11 8 Genes in module_60 www.broad.mit.e...
Broad module_12 View Gene Set 1.617e-12 346 7.342e-11 10 Genes in module_12 www.broad.mit.e...
Broad module_55 View Gene Set 1.883e-12 807 7.77e-11 11 Genes in module_55 www.broad.mit.e...
Broad module_45 View Gene Set 1.025e-11 563 3.876e-10 12 Genes in module_45 www.broad.mit.e...
Broad module_23 View Gene Set 2.275e-10 552 7.946e-09 13 Genes in module_23 www.broad.mit.e...
Broad module_5 View Gene Set 5.429e-10 420 1.761e-08 14 Genes in module_5 www.broad.mit.e...
Broad module_24 View Gene Set 4.225e-09 443 1.279e-07 15 Genes in module_24 www.broad.mit.e...
Broad module_1 View Gene Set 9.458e-09 355 2.684e-07 16 Genes in module_1 www.broad.mit.e...
Broad module_33 View Gene Set 1.661e-08 369 4.435e-07 17 Genes in module_33 www.broad.mit.e...
Broad module_84 View Gene Set 1.135e-07 526 2.863e-06 18 Genes in module_84 www.broad.mit.e...
Broad module_212 View Gene Set 3.895e-07 316 9.308e-06 19 Genes in module_212 www.broad.mit.e...
Broad module_180 View Gene Set 1.015e-06 113 2.305e-05 20 Genes in module_180 www.broad.mit.e...
Broad module_19 View Gene Set 1.579e-06 306 3.414e-05 21 Genes in module_19 www.broad.mit.e...
Broad module_342 View Gene Set 3.321e-06 195 6.853e-05 22 Genes in module_342 www.broad.mit.e...
Broad module_257 View Gene Set 1.316e-05 137 0.0002597 23 Genes in module_257 www.broad.mit.e...
Broad module_44 View Gene Set 1.532e-05 319 0.0002897 24 Genes in module_44 www.broad.mit.e...
Broad module_64 View Gene Set 1.692e-05 506 0.0003074 25 Genes in module_64 www.broad.mit.e...
Broad module_235 View Gene Set 3.206e-05 81 0.0005599 26 Genes in module_235 www.broad.mit.e...
Broad module_40 View Gene Set 7.809e-05 81 0.001304 27 Genes in module_40 www.broad.mit.e...
Broad module_139 View Gene Set 8.043e-05 74 0.001304 27 Genes in module_139 www.broad.mit.e...
Broad module_41 View Gene Set 9.82e-05 542 0.001537 29 Genes in module_41 www.broad.mit.e...
Broad module_220 View Gene Set 0.0001078 328 0.001631 30 Genes in module_220 www.broad.mit.e...
Broad module_116 View Gene Set 0.0001243 29 0.00182 31 Genes in module_116 www.broad.mit.e...
Broad module_75 View Gene Set 0.0001313 391 0.001863 32 Genes in module_75 www.broad.mit.e...
Broad module_129 View Gene Set 0.0001464 215 0.002014 33 Genes in module_129 www.broad.mit.e...
Broad module_346 View Gene Set 0.0002213 17 0.002956 34 Genes in module_346 www.broad.mit.e...
Broad module_94 View Gene Set 0.0002719 362 0.003527 35 Genes in module_94 www.broad.mit.e...
Broad module_213 View Gene Set 0.0003626 77 0.004573 36 Genes in module_213 www.broad.mit.e...
Broad module_249 View Gene Set 0.0003878 21 0.004758 37 Genes in module_249 www.broad.mit.e...
Broad module_13 View Gene Set 0.0006007 498 0.007177 38 Genes in module_13 www.broad.mit.e...
Broad module_563 View Gene Set 0.0007972 15 0.00928 39 Genes in module_563 www.broad.mit.e...
Broad module_408 View Gene Set 0.0009757 18 0.01107 40 Genes in module_408 www.broad.mit.e...
Broad module_107 View Gene Set 0.001012 77 0.01121 41 Genes in module_107 www.broad.mit.e...
Broad module_259 View Gene Set 0.001442 46 0.01558 42 Genes in module_259 www.broad.mit.e...
Broad module_27 View Gene Set 0.001939 345 0.02047 43 Genes in module_27 www.broad.mit.e...
Broad module_174 View Gene Set 0.002015 92 0.0208 44 Genes in module_174 www.broad.mit.e...
Broad module_92 View Gene Set 0.002117 146 0.0209 45 Genes in module_92 www.broad.mit.e...
Broad module_562 View Gene Set 0.002109 21 0.0209 45 Genes in module_562 www.broad.mit.e...
Broad module_357 View Gene Set 0.002429 78 0.02347 47 Genes in module_357 www.broad.mit.e...
Broad module_274 View Gene Set 0.002537 82 0.02353 48 Genes in module_274 www.broad.mit.e...
Broad module_432 View Gene Set 0.002539 15 0.02353 48 Genes in module_432 www.broad.mit.e...
Broad module_112 View Gene Set 0.00269 255 0.02442 50 Genes in module_112 www.broad.mit.e...
Broad module_46 View Gene Set 0.002968 386 0.02543 51 Genes in module_46 www.broad.mit.e...
Broad module_122 View Gene Set 0.00291 138 0.02543 51 Genes in module_122 www.broad.mit.e...
Broad module_144 View Gene Set 0.002951 8 0.02543 51 Genes in module_144 www.broad.mit.e...
Broad module_154 View Gene Set 0.00426 73 0.03454 54 Genes in module_154 www.broad.mit.e...
Broad module_172 View Gene Set 0.004336 93 0.03454 54 Genes in module_172 www.broad.mit.e...
Broad module_248 View Gene Set 0.004199 126 0.03454 54 Genes in module_248 www.broad.mit.e...
Broad module_297 View Gene Set 0.004275 78 0.03454 54 Genes in module_297 www.broad.mit.e...
Broad module_43 View Gene Set 0.005719 97 0.04477 58 Genes in module_43 www.broad.mit.e...
Broad module_234 View Gene Set 0.006432 53 0.04787 59 Genes in module_234 www.broad.mit.e...
Broad module_305 View Gene Set 0.006383 19 0.04787 59 Genes in module_305 www.broad.mit.e...
Broad module_418 View Gene Set 0.006246 56 0.04787 59 Genes in module_418 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CELLULAR_CARBOHYDRATE_METABOLIC_PROCESS View Gene Set 3.126e-05 122 0.02579 1 Genes annotated by the GO term GO:0044262. The chemical reactions and pathways involving carbohydrates any of a group of organic compounds based of the general formula Cx(H2O)y as carried out by individual cells. www.broad.mit.e...
Broad INSULIN_RECEPTOR_SIGNALING_PATHWAY View Gene Set 7.194e-05 18 0.02967 2 Genes annotated by the GO term GO:0008286. The series of molecular signals generated as a consequence of the insulin receptor binding to insulin. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad PLASMA_MEMBRANE View Gene Set 2.152e-08 1392 5.014e-06 1 Genes annotated by the GO term GO:0005886. The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. www.broad.mit.e...
Broad MEMBRANE View Gene Set 7.033e-08 1939 8.193e-06 2 Genes annotated by the GO term GO:0016020. Double layer of lipid molecules that encloses all cells and in eukaryotes many organelles; may be a single or double lipid bilayer; also includes associated proteins. www.broad.mit.e...
Broad INTRINSIC_TO_MEMBRANE View Gene Set 4.896e-07 1319 3.803e-05 3 Genes annotated by the GO term GO:0031224. Located in a membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad INTEGRAL_TO_MEMBRANE View Gene Set 9.165e-07 1301 5.339e-05 4 Genes annotated by the GO term GO:0016021. Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein indicates that all or part of the peptide sequence is embedded in the membrane. www.broad.mit.e...
Broad MEMBRANE_PART View Gene Set 1.551e-06 1632 6.024e-05 5 Genes annotated by the GO term GO:0044425. Any constituent part of a membrane a double layer of lipid molecules that encloses all cells and in eukaryotes many organelles; may be a single or double lipid bilayer; also includes associated proteins. www.broad.mit.e...
Broad PLASMA_MEMBRANE_PART View Gene Set 1.407e-06 1142 6.024e-05 5 Genes annotated by the GO term GO:0044459. Any constituent part of the plasma membrane the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. www.broad.mit.e...
Broad INTRINSIC_TO_PLASMA_MEMBRANE View Gene Set 3.432e-06 978 0.0001142 7 Genes annotated by the GO term GO:0031226. Located in the plasma membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad INTEGRAL_TO_PLASMA_MEMBRANE View Gene Set 5.18e-06 964 0.0001509 8 Genes annotated by the GO term GO:0005887. Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad ACTIN_CYTOSKELETON View Gene Set 9.086e-05 127 0.002352 9 Genes annotated by the GO term GO:0015629. The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. www.broad.mit.e...
Broad MEMBRANE_FRACTION View Gene Set 0.000138 333 0.003217 10 Genes annotated by the GO term GO:0005624. That fraction of cells prepared by disruptive biochemical methods that includes the plasma and other membranes. www.broad.mit.e...
Broad INTEGRAL_TO_GOLGI_MEMBRANE View Gene Set 0.0002829 10 0.005991 11 Genes annotated by the GO term GO:0030173. Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad CELL_FRACTION View Gene Set 0.0006007 484 0.01166 12 Genes annotated by the GO term GO:0000267. A generic term for parts of cells prepared by disruptive biochemical techniques. www.broad.mit.e...
Broad MICROTUBULE_ASSOCIATED_COMPLEX View Gene Set 0.0009034 47 0.01619 13 Genes annotated by the GO term GO:0005875. Any multimeric complex connected to a microtubule. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad PHOSPHOTRANSFERASE_ACTIVITY_ALCOHOL_GROUP_AS_ACCEPTOR View Gene Set 2.379e-05 326 0.009422 1 Genes annotated by the GO term GO:0016773. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). www.broad.mit.e...
Broad ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0002138 122 0.01876 2 Genes annotated by the GO term GO:0022804. Catalysis of the transfer of a specific substance or related group of substances from one side of a membrane to the other up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction. www.broad.mit.e...
Broad KINASE_ACTIVITY View Gene Set 0.0001188 359 0.01876 2 Genes annotated by the GO term GO:0016301. Catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad SUBSTRATE_SPECIFIC_TRANSPORTER_ACTIVITY View Gene Set 0.0002842 389 0.01876 2 Genes annotated by the GO term GO:0022892. Enables the directed movement of a specific substance or group of related substances (such as macromolecules small molecules ions) into out of within or between cells. www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS View Gene Set 0.0002744 24 0.01876 2 Genes annotated by the GO term GO:0042625. Catalysis of the transfer of an ion from one side of a membrane to the other driven by the reaction: ATP + H2O = ADP + phosphate. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS View Gene Set 0.0001714 414 0.01876 2 Genes annotated by the GO term GO:0016772. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad HYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDESCATALYZING_TRANSMEMBRANE_MOVEMENT_OF_SUBSTANCES View Gene Set 0.0004325 39 0.01903 7 Genes annotated by the GO term GO:0016820. Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane. www.broad.mit.e...
Broad TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0004286 371 0.01903 7 Genes annotated by the GO term GO:0022857. Catalysis of the transfer of a substance from one side of a membrane to the other. www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED_TO_MOVEMENT_OF_SUBSTANCES View Gene Set 0.0004041 40 0.01903 7 Genes annotated by the GO term GO:0043492. Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of a substance. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS View Gene Set 0.0004963 23 0.01965 10 Genes annotated by the GO term GO:0016627. Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...
Broad PRIMARY_ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0006205 40 0.02234 11 Genes annotated by the GO term GO:0015399. Catalysis of the transfer of a solute from one side of the membrane to the other up the solute's concentration gradient by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is powered by a primary energy source. Primary energy sources known to be coupled to transport are chemical electrical and solar sources. www.broad.mit.e...
Broad SUBSTRATE_SPECIFIC_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0007885 341 0.02402 12 Genes annotated by the GO term GO:0022891. Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other. www.broad.mit.e...
Broad PROTEIN_KINASE_ACTIVITY View Gene Set 0.0007755 278 0.02402 12 Genes annotated by the GO term GO:0004672. Catalysis of the phosphorylation of an amino acid residue in a protein usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. www.broad.mit.e...
Broad NUCLEOTIDE_BINDING View Gene Set 0.001093 218 0.02706 14 Genes annotated by the GO term GO:0000166. Interacting selectively with a nucleotide any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety. www.broad.mit.e...
Broad CALCIUM_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.000981 11 0.02706 14 Genes annotated by the GO term GO:0015085. Catalysis of the transfer of calcium (Ca) ions from one side of a membrane to the other. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY View Gene Set 0.001066 280 0.02706 14 Genes annotated by the GO term GO:0016491. Catalysis of an oxidation-reduction (redox) reaction a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized while the other acts as hydrogen or electron acceptor and becomes reduced. www.broad.mit.e...
Broad PURINE_NUCLEOTIDE_BINDING View Gene Set 0.001303 205 0.03035 17 Genes annotated by the GO term GO:0017076. Interacting selectively with purine nucleotides any compound consisting of a purine nucleoside esterified with (ortho)phosphate. www.broad.mit.e...
Broad HYDRO_LYASE_ACTIVITY View Gene Set 0.001988 27 0.03632 18 Genes annotated by the GO term GO:0016836. Catalysis of the cleavage of a carbon-oxygen bond by elimination of water. www.broad.mit.e...
Broad CATION_TRANSPORTING_ATPASE_ACTIVITY View Gene Set 0.001789 11 0.03632 18 Genes annotated by the GO term GO:0019829. Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS_PHOSPHORYLATIVE_MECHANISM View Gene Set 0.002107 20 0.03632 18 Genes annotated by the GO term GO:0015662. Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate. www.broad.mit.e...
Broad LYASE_ACTIVITY View Gene Set 0.002009 68 0.03632 18 Genes annotated by the GO term GO:0016829. Catalysis of the cleavage of C-C C-O C-N and other bonds by other means than by hydrolysis or oxidation or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction but only one in the other direction. When acting on the single substrate a molecule is eliminated and this generates either a new double bond or a new ring. www.broad.mit.e...
Broad PURINE_RIBONUCLEOTIDE_BINDING View Gene Set 0.001711 200 0.03632 18 Genes annotated by the GO term GO:0032555. Interacting selectively with a purine ribonucleotide any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. www.broad.mit.e...
Broad PHOSPHOLIPID_TRANSPORTER_ACTIVITY View Gene Set 0.002109 12 0.03632 18 Genes annotated by the GO term GO:0005548. Enables the directed movement of phospholipids into out of within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester. www.broad.mit.e...
Broad METALLOENDOPEPTIDASE_ACTIVITY View Gene Set 0.002536 27 0.04185 24 Genes annotated by the GO term GO:0004222. Catalysis of the hydrolysis of nonterminal peptide linkages in oligopeptides or polypeptides. Enzymes of this class contain a chelated metal ion essential to their catalytic activity at their active sites. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_SULFUR_CONTAINING_GROUPS View Gene Set 0.002768 31 0.04385 25 Genes annotated by the GO term GO:0016782. Catalysis of the transfer of a sulfur-containing group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad SULFOTRANSFERASE_ACTIVITY View Gene Set 0.00318 27 0.04844 26 Genes annotated by the GO term GO:0008146. Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate. www.broad.mit.e...
Broad ADENYL_NUCLEOTIDE_BINDING View Gene Set 0.003555 163 0.04854 27 Genes annotated by the GO term GO:0030554. Interacting selectively with adenyl nucleotides any compound consisting of adenosine esterified with (ortho)phosphate. www.broad.mit.e...
Broad DEACETYLASE_ACTIVITY View Gene Set 0.003396 10 0.04854 27 Genes annotated by the GO term GO:0019213. Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS View Gene Set 0.003528 63 0.04854 27 Genes annotated by the GO term GO:0016614. Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 10207129 View Gene Set 7.486e-05 20 0.01332 1 Eph receptors and ephrins: effectors of morphogenesis. www.ncbi.nlm.ni...
PMID 10730216 View Gene Set 7.486e-05 21 0.01332 1 Eph receptors and ephrins: regulators of guidance and assembly. www.ncbi.nlm.ni...
PMID 11128993 View Gene Set 7.486e-05 21 0.01332 1 Roles of Eph receptors and ephrins in segmental patterning. www.ncbi.nlm.ni...
PMID 11256076 View Gene Set 7.486e-05 20 0.01332 1 Multiple roles of EPH receptors and ephrins in neural development. www.ncbi.nlm.ni...
PMID 11836511 View Gene Set 6.761e-05 22 0.01332 1 The vacuolar (H+)-ATPases--nature's most versatile proton pumps. www.ncbi.nlm.ni...
PMID 12788495 View Gene Set 6.761e-05 22 0.01332 1 Proton translocation driven by ATP hydrolysis in V-ATPases. www.ncbi.nlm.ni...
PMID 14580332 View Gene Set 6.761e-05 22 0.01332 1 Revised nomenclature for mammalian vacuolar-type H+ -ATPase subunit genes. www.ncbi.nlm.ni...
PMID 14594945 View Gene Set 1.667e-05 16 0.01332 1 MARK4 is a novel microtubule-associated proteins/microtubule affinity-regulating kinase that binds to the cellular microtubule network and to centrosomes. www.ncbi.nlm.ni...
PMID 14597263 View Gene Set 6.761e-05 22 0.01332 1 Neurotransmitter release: the dark side of the vacuolar-H+ATPase. www.ncbi.nlm.ni...
PMID 18660489 View Gene Set 1.165e-05 250 0.01332 1 Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations. www.ncbi.nlm.ni...
PMID 19851296 View Gene Set 8.502e-05 142 0.01332 1 Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals. www.ncbi.nlm.ni...
PMID 20198315 View Gene Set 5.382e-05 143 0.01332 1 Association of genetic variants with hemorrhagic stroke in Japanese individuals. www.ncbi.nlm.ni...
PMID 9267020 View Gene Set 7.486e-05 20 0.01332 1 Unified nomenclature for Eph family receptors and their ligands the ephrins. Eph Nomenclature Committee. www.ncbi.nlm.ni...
PMID 9442887 View Gene Set 8.388e-05 19 0.01332 1 Structure function and regulation of the vacuolar (H+)-ATPase. www.ncbi.nlm.ni...
PMID 9530499 View Gene Set 7.486e-05 20 0.01332 1 The ephrins and Eph receptors in neural development. www.ncbi.nlm.ni...
PMID 9576626 View Gene Set 7.486e-05 20 0.01332 1 The Eph family receptors and ligands. www.ncbi.nlm.ni...
PMID 20167577 View Gene Set 0.0001053 29 0.01554 17 Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk. www.ncbi.nlm.ni...
PMID 12754519 View Gene Set 0.0001394 71 0.01941 18 Identification and quantification of N-linked glycoproteins using hydrazide chemistry stable isotope labeling and mass spectrometry. www.ncbi.nlm.ni...
PMID 10221984 View Gene Set 0.000237 18 0.02583 19 Vacuolar and plasma membrane proton-adenosinetriphosphatases. www.ncbi.nlm.ni...
PMID 10224039 View Gene Set 0.000237 18 0.02583 19 Structure and properties of the vacuolar (H+)-ATPases. www.ncbi.nlm.ni...
PMID 10340843 View Gene Set 0.000237 18 0.02583 19 Introduction: V-ATPases 1992-1998. www.ncbi.nlm.ni...
PMID 10440860 View Gene Set 0.000237 18 0.02583 19 Animal plasma membrane energization by proton-motive V-ATPases. www.ncbi.nlm.ni...
PMID 9210392 View Gene Set 0.000237 18 0.02583 19 The vacuolar H+-ATPase: a universal proton pump of eukaryotes. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50002 View Gene Set 0.000105 212 0.03858 1 SH3 expasy.org/pros...
Null PS50194 View Gene Set 6.727e-05 11 0.03858 1 FILAMIN_REPEAT expasy.org/pros...
Null PS00010 View Gene Set 0.0001749 103 0.04284 3 ASX_HYDROXYL expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:3.6.3.14 View Gene Set 0.0001208 45 0.01908 1 H(+)-transporting two-sector ATPase expasy.org/enzy...
Null EC:2.7.10.1 View Gene Set 0.0002653 38 0.02096 2 Receptor protein-tyrosine kinase expasy.org/enzy...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SYNJ1 View Gene Set 1.154e-05 13 0.02739 1 Protein-protein-interaction for SYNJ1 www.ncbi.nlm.ni...
Null ppi.RAF1 View Gene Set 3.282e-05 56 0.03896 2 Protein-protein-interaction for RAF1 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SYNJ1 View Gene Set 1.154e-05 13 0.04147 1 Protein-protein-interaction for SYNJ1 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null cholesterol biosynthesis II (via 24 25-dihydrolanosterol) View Gene Set 4.183e-05 13 0.003625 1 HUMANCYC - cholesterol biosynthesis II (via 24 25-dihydrolanosterol) gene set www.pathwaycomm... 25-dihydrolanos...
Null cholesterol biosynthesis I View Gene Set 4.183e-05 13 0.003625 1 HUMANCYC - cholesterol biosynthesis I gene set www.pathwaycomm...
Null cholesterol biosynthesis III (via desmosterol) View Gene Set 4.183e-05 13 0.003625 1 HUMANCYC - cholesterol biosynthesis III (via desmosterol) gene set www.pathwaycomm...
Null superpathway of cholesterol biosynthesis View Gene Set 8.724e-05 25 0.005671 4 HUMANCYC - superpathway of cholesterol biosynthesis gene set www.pathwaycomm...
Null D-myo-inositol (1 4 5)-trisphosphate degradation View Gene Set 0.0005931 13 0.03084 5 HUMANCYC - D-myo-inositol (1 4 5)-trisphosphate degradation gene set www.pathwaycomm... 4... 5)-trisphosphat...
Null TCA cycle View Gene Set 0.0009213 13 0.03992 6 HUMANCYC - TCA cycle gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EphrinB-EPHB pathway View Gene Set 0.001577 57 0.03279 1 NCI_NATURE - EphrinB-EPHB pathway gene set www.pathwaycomm...
Null Nectin adhesion pathway View Gene Set 0.001651 126 0.03279 1 NCI_NATURE - Nectin adhesion pathway gene set www.pathwaycomm...
Null Plasma membrane estrogen receptor signaling View Gene Set 0.001763 297 0.03279 1 NCI_NATURE - Plasma membrane estrogen receptor signaling gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 0.0009063 812 0.03279 1 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null Endothelins View Gene Set 0.0002357 439 0.03279 1 NCI_NATURE - Endothelins gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 0.0009063 812 0.03279 1 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null IFN-gamma pathway View Gene Set 0.001652 590 0.03279 1 NCI_NATURE - IFN-gamma pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 0.0009063 812 0.03279 1 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 0.001504 841 0.03279 1 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null Ephrin B reverse signaling View Gene Set 0.00111 28 0.03279 1 NCI_NATURE - Ephrin B reverse signaling gene set www.pathwaycomm...
Null RAC1 signaling pathway View Gene Set 0.003697 194 0.0382 11 NCI_NATURE - RAC1 signaling pathway gene set www.pathwaycomm...
Null p38 MAPK signaling pathway View Gene Set 0.00257 189 0.0382 11 NCI_NATURE - p38 MAPK signaling pathway gene set www.pathwaycomm...
Null Signaling events mediated by VEGFR1 and VEGFR2 View Gene Set 0.002852 69 0.0382 11 NCI_NATURE - Signaling events mediated by VEGFR1 and VEGFR2 gene set www.pathwaycomm...
Null Regulation of p38-alpha and p38-beta View Gene Set 0.002311 164 0.0382 11 NCI_NATURE - Regulation of p38-alpha and p38-beta gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 0.00315 688 0.0382 11 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null Regulation of RAC1 activity View Gene Set 0.003697 194 0.0382 11 NCI_NATURE - Regulation of RAC1 activity gene set www.pathwaycomm...
Null Regulation of RhoA activity View Gene Set 0.003697 194 0.0382 11 NCI_NATURE - Regulation of RhoA activity gene set www.pathwaycomm...
Null RhoA signaling pathway View Gene Set 0.003697 194 0.0382 11 NCI_NATURE - RhoA signaling pathway gene set www.pathwaycomm...
Null Insulin Pathway View Gene Set 0.004744 263 0.04011 19 NCI_NATURE - Insulin Pathway gene set www.pathwaycomm...
Null Arf6 signaling events View Gene Set 0.004744 263 0.04011 19 NCI_NATURE - Arf6 signaling events gene set www.pathwaycomm...
Null Arf6 trafficking events View Gene Set 0.004744 263 0.04011 19 NCI_NATURE - Arf6 trafficking events gene set www.pathwaycomm...
Null LKB1 signaling events View Gene Set 0.004113 372 0.04011 19 NCI_NATURE - LKB1 signaling events gene set www.pathwaycomm...
Null IGF1 pathway View Gene Set 0.005889 271 0.04518 23 NCI_NATURE - IGF1 pathway gene set www.pathwaycomm...
Null Signaling events mediated by Stem cell factor receptor (c-Kit) View Gene Set 0.005803 52 0.04518 23 NCI_NATURE - Signaling events mediated by Stem cell factor receptor (c-Kit) gene set www.pathwaycomm...
Null IL1-mediated signaling events View Gene Set 0.006073 234 0.04518 23 NCI_NATURE - IL1-mediated signaling events gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 0.006979 677 0.04993 26 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Cholesterol biosynthesis View Gene Set 7.698e-07 20 0.0004299 1 REACTOME - Cholesterol biosynthesis gene set www.pathwaycomm...
Null Metabolism of lipids and lipoproteins View Gene Set 6.387e-07 252 0.0004299 1 REACTOME - Metabolism of lipids and lipoproteins gene set www.pathwaycomm...
Null Transmembrane transport of small molecules View Gene Set 3.06e-05 367 0.00695 3 REACTOME - Transmembrane transport of small molecules gene set www.pathwaycomm...
Null Ion transport by P-type ATPases View Gene Set 2.323e-05 29 0.00695 3 REACTOME - Ion transport by P-type ATPases gene set www.pathwaycomm...
Null Triglyceride Biosynthesis View Gene Set 3.111e-05 28 0.00695 3 REACTOME - Triglyceride Biosynthesis gene set www.pathwaycomm...
Null Insulin receptor recycling View Gene Set 8.479e-05 25 0.01578 6 REACTOME - Insulin receptor recycling gene set www.pathwaycomm...
Null Formation of Platelet plug View Gene Set 0.0001178 206 0.0188 7 REACTOME - Formation of Platelet plug gene set www.pathwaycomm...
Null Fatty acid triacylglycerol and ketone body metabolism View Gene Set 0.0001996 83 0.02786 8 REACTOME - Fatty acid triacylglycerol and ketone body metabolism gene set www.pathwaycomm... triacylglycerol... and ketone body...
Null Platelet Activation View Gene Set 0.000363 164 0.04505 9 REACTOME - Platelet Activation gene set www.pathwaycomm...
Null Transferrin endocytosis and recycling View Gene Set 0.0004246 27 0.04742 10 REACTOME - Transferrin endocytosis and recycling gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-331-3p View Gene Set 1.879e-09 1191 8.693e-07 1 microRNA targets for hsa-miR-331-3p from miranda.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 2.568e-09 1222 8.693e-07 1 microRNA targets for hsa-miR-874 from miranda.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 8.494e-09 1921 1.917e-06 3 microRNA targets for hsa-miR-486-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1207-5p View Gene Set 2.458e-08 2608 4.147e-06 4 microRNA targets for hsa-miR-1207-5p from miranda.targets www.mirbase.org...
Null hsa-miR-296-5p View Gene Set 3.675e-08 887 4.147e-06 4 microRNA targets for hsa-miR-296-5p from miranda.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 3.653e-08 2815 4.147e-06 4 microRNA targets for hsa-miR-608 from miranda.targets www.mirbase.org...
Null hsa-miR-765 View Gene Set 4.304e-08 2575 4.163e-06 7 microRNA targets for hsa-miR-765 from miranda.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 1.411e-07 2291 1.194e-05 8 microRNA targets for hsa-miR-637 from miranda.targets www.mirbase.org...
Null hsa-miR-1291 View Gene Set 2.042e-07 1386 1.536e-05 9 microRNA targets for hsa-miR-1291 from miranda.targets www.mirbase.org...
Null hsa-miR-939 View Gene Set 2.896e-07 2203 1.961e-05 10 microRNA targets for hsa-miR-939 from miranda.targets www.mirbase.org...
Null hsa-miR-328 View Gene Set 4.022e-07 1308 2.475e-05 11 microRNA targets for hsa-miR-328 from miranda.targets www.mirbase.org...
Null hsa-miR-663b View Gene Set 1.814e-06 871 0.0001024 12 microRNA targets for hsa-miR-663b from miranda.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 2.169e-06 1693 0.000113 13 microRNA targets for hsa-miR-149 from miranda.targets www.mirbase.org...
Null hsa-miR-1207-3p View Gene Set 1.275e-05 1414 0.0006167 14 microRNA targets for hsa-miR-1207-3p from miranda.targets www.mirbase.org...
Null hsa-miR-423-5p View Gene Set 1.407e-05 1898 0.000635 15 microRNA targets for hsa-miR-423-5p from miranda.targets www.mirbase.org...
Null hsa-miR-661 View Gene Set 2.027e-05 2076 0.0008575 16 microRNA targets for hsa-miR-661 from miranda.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 2.687e-05 1277 0.001011 17 microRNA targets for hsa-miR-324-3p from miranda.targets www.mirbase.org...
Null hsa-miR-663 View Gene Set 2.572e-05 993 0.001011 17 microRNA targets for hsa-miR-663 from miranda.targets www.mirbase.org...
Null hsa-miR-766 View Gene Set 3.436e-05 1609 0.001224 19 microRNA targets for hsa-miR-766 from miranda.targets www.mirbase.org...
Null hsa-miR-1233 View Gene Set 4.234e-05 824 0.001433 20 microRNA targets for hsa-miR-1233 from miranda.targets www.mirbase.org...
Null hsa-miR-146b-3p View Gene Set 4.72e-05 1049 0.001522 21 microRNA targets for hsa-miR-146b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-541 View Gene Set 8.966e-05 1275 0.002759 22 microRNA targets for hsa-miR-541 from miranda.targets www.mirbase.org...
Null hsa-miR-1296 View Gene Set 0.0001392 949 0.003926 23 microRNA targets for hsa-miR-1296 from miranda.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.0001354 1562 0.003926 23 microRNA targets for hsa-miR-24 from miranda.targets www.mirbase.org...
Null hsa-miR-339-5p View Gene Set 0.000145 1258 0.003928 25 microRNA targets for hsa-miR-339-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1268 View Gene Set 0.0001831 508 0.004364 26 microRNA targets for hsa-miR-1268 from miranda.targets www.mirbase.org...
Null hsa-miR-342-5p View Gene Set 0.0001867 861 0.004364 26 microRNA targets for hsa-miR-342-5p from miranda.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 0.0001869 1386 0.004364 26 microRNA targets for hsa-miR-506 from miranda.targets www.mirbase.org...
Null hsa-miR-602 View Gene Set 0.0001857 652 0.004364 26 microRNA targets for hsa-miR-602 from miranda.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 0.0001935 1145 0.004367 30 microRNA targets for hsa-miR-125b from miranda.targets www.mirbase.org...
Null hsa-miR-1205 View Gene Set 0.0002169 1762 0.004589 31 microRNA targets for hsa-miR-1205 from miranda.targets www.mirbase.org...
Null hsa-miR-654-5p View Gene Set 0.0002115 1123 0.004589 31 microRNA targets for hsa-miR-654-5p from miranda.targets www.mirbase.org...
Null hsa-miR-612 View Gene Set 0.0002242 2298 0.0046 33 microRNA targets for hsa-miR-612 from miranda.targets www.mirbase.org...
Null hsa-miR-1289 View Gene Set 0.0002506 1229 0.004989 34 microRNA targets for hsa-miR-1289 from miranda.targets www.mirbase.org...
Null hsa-miR-1225-3p View Gene Set 0.0002686 950 0.005195 35 microRNA targets for hsa-miR-1225-3p from miranda.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 0.0003544 1307 0.006485 36 microRNA targets for hsa-miR-125a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-658 View Gene Set 0.0003533 1103 0.006485 36 microRNA targets for hsa-miR-658 from miranda.targets www.mirbase.org...
Null hsa-miR-720 View Gene Set 0.0003764 342 0.006578 38 microRNA targets for hsa-miR-720 from miranda.targets www.mirbase.org...
Null hsa-miR-744 View Gene Set 0.0003789 797 0.006578 38 microRNA targets for hsa-miR-744 from miranda.targets www.mirbase.org...
Null hsa-miR-1247 View Gene Set 0.0004529 575 0.007665 40 microRNA targets for hsa-miR-1247 from miranda.targets www.mirbase.org...
Null hsa-miR-491-5p View Gene Set 0.0004999 1297 0.008254 41 microRNA targets for hsa-miR-491-5p from miranda.targets www.mirbase.org...
Null hsa-miR-611 View Gene Set 0.0006092 441 0.009373 42 microRNA targets for hsa-miR-611 from miranda.targets www.mirbase.org...
Null hsa-miR-665 View Gene Set 0.0006092 1901 0.009373 42 microRNA targets for hsa-miR-665 from miranda.targets www.mirbase.org...
Null hsa-miR-668 View Gene Set 0.0005897 719 0.009373 42 microRNA targets for hsa-miR-668 from miranda.targets www.mirbase.org...
Null hsa-miR-675 View Gene Set 0.0006713 528 0.0101 45 microRNA targets for hsa-miR-675 from miranda.targets www.mirbase.org...
Null hsa-miR-323-5p View Gene Set 0.000705 821 0.01022 46 microRNA targets for hsa-miR-323-5p from miranda.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 0.0007094 1945 0.01022 46 microRNA targets for hsa-miR-330-5p from miranda.targets www.mirbase.org...
Null hsa-miR-147 View Gene Set 0.0007309 1140 0.01031 48 microRNA targets for hsa-miR-147 from miranda.targets www.mirbase.org...
Null hsa-miR-1249 View Gene Set 0.0008151 586 0.01126 49 microRNA targets for hsa-miR-1249 from miranda.targets www.mirbase.org...
Null hsa-miR-1266 View Gene Set 0.0009189 2015 0.01244 50 microRNA targets for hsa-miR-1266 from miranda.targets www.mirbase.org...
Null hsa-miR-1321 View Gene Set 0.0009718 1850 0.0129 51 microRNA targets for hsa-miR-1321 from miranda.targets www.mirbase.org...
Null hsa-miR-1307 View Gene Set 0.001036 255 0.01302 52 microRNA targets for hsa-miR-1307 from miranda.targets www.mirbase.org...
Null hsa-miR-1827 View Gene Set 0.001035 1819 0.01302 52 microRNA targets for hsa-miR-1827 from miranda.targets www.mirbase.org...
Null hsa-miR-638 View Gene Set 0.001039 515 0.01302 52 microRNA targets for hsa-miR-638 from miranda.targets www.mirbase.org...
Null hsa-miR-933 View Gene Set 0.001064 300 0.0131 55 microRNA targets for hsa-miR-933 from miranda.targets www.mirbase.org...
Null hsa-miR-450b-3p View Gene Set 0.001202 987 0.01427 56 microRNA targets for hsa-miR-450b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-769-3p View Gene Set 0.001199 1112 0.01427 56 microRNA targets for hsa-miR-769-3p from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.001273 1319 0.01467 58 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-361-3p View Gene Set 0.001279 1615 0.01467 58 microRNA targets for hsa-miR-361-3p from miranda.targets www.mirbase.org...
Null hsa-miR-760 View Gene Set 0.001352 1689 0.01525 60 microRNA targets for hsa-miR-760 from miranda.targets www.mirbase.org...
Null hsa-miR-151-5p View Gene Set 0.001567 625 0.01739 61 microRNA targets for hsa-miR-151-5p from miranda.targets www.mirbase.org...
Null hsa-miR-484 View Gene Set 0.001656 1263 0.01808 62 microRNA targets for hsa-miR-484 from miranda.targets www.mirbase.org...
Null hsa-miR-923 View Gene Set 0.001752 471 0.01882 63 microRNA targets for hsa-miR-923 from miranda.targets www.mirbase.org...
Null hsa-miR-1298 View Gene Set 0.001923 406 0.02034 64 microRNA targets for hsa-miR-1298 from miranda.targets www.mirbase.org...
Null hsa-miR-601 View Gene Set 0.001984 884 0.02063 65 microRNA targets for hsa-miR-601 from miranda.targets www.mirbase.org...
Null hsa-miR-615-5p View Gene Set 0.002011 1189 0.02063 65 microRNA targets for hsa-miR-615-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1203 View Gene Set 0.002633 503 0.0266 67 microRNA targets for hsa-miR-1203 from miranda.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.003014 2301 0.03001 68 microRNA targets for hsa-miR-15a from miranda.targets www.mirbase.org...
Null hsa-miR-296-3p View Gene Set 0.003077 1695 0.03019 69 microRNA targets for hsa-miR-296-3p from miranda.targets www.mirbase.org...
Null hsa-miR-886-5p View Gene Set 0.003675 504 0.03555 70 microRNA targets for hsa-miR-886-5p from miranda.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.004108 1528 0.03917 71 microRNA targets for hsa-miR-370 from miranda.targets www.mirbase.org...
Null hsa-miR-642 View Gene Set 0.004557 1484 0.04264 72 microRNA targets for hsa-miR-642 from miranda.targets www.mirbase.org...
Null hsa-miR-941 View Gene Set 0.004598 459 0.04264 72 microRNA targets for hsa-miR-941 from miranda.targets www.mirbase.org...
Null hsa-miR-324-5p View Gene Set 0.004755 869 0.04311 74 microRNA targets for hsa-miR-324-5p from miranda.targets www.mirbase.org...
Null hsa-miR-483-3p View Gene Set 0.004776 1065 0.04311 74 microRNA targets for hsa-miR-483-3p from miranda.targets www.mirbase.org...
Null hsa-miR-650 View Gene Set 0.005172 1724 0.04607 76 microRNA targets for hsa-miR-650 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-484 View Gene Set 3.158e-11 733 1.961e-08 1 microRNA targets for hsa-miR-484 from mirbase.targets www.mirbase.org...
Null hsa-miR-663 View Gene Set 5.516e-11 743 1.961e-08 1 microRNA targets for hsa-miR-663 from mirbase.targets www.mirbase.org...
Null hsa-miR-744 View Gene Set 1.1e-10 715 2.607e-08 3 microRNA targets for hsa-miR-744 from mirbase.targets www.mirbase.org...
Null hsa-miR-661 View Gene Set 1.913e-09 575 3.4e-07 4 microRNA targets for hsa-miR-661 from mirbase.targets www.mirbase.org...
Null hsa-miR-324-5p View Gene Set 4.95e-08 801 7.04e-06 5 microRNA targets for hsa-miR-324-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 8.002e-08 729 9.483e-06 6 microRNA targets for hsa-miR-608 from mirbase.targets www.mirbase.org...
Null hsa-miR-328 View Gene Set 1.007e-07 685 1.023e-05 7 microRNA targets for hsa-miR-328 from mirbase.targets www.mirbase.org...
Null hsa-miR-296-5p View Gene Set 2.122e-07 755 1.371e-05 8 microRNA targets for hsa-miR-296-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-361-3p View Gene Set 2.132e-07 634 1.371e-05 8 microRNA targets for hsa-miR-361-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-483-3p View Gene Set 2.177e-07 702 1.371e-05 8 microRNA targets for hsa-miR-483-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 1.631e-07 773 1.371e-05 8 microRNA targets for hsa-miR-486-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-615-5p View Gene Set 2.314e-07 848 1.371e-05 8 microRNA targets for hsa-miR-615-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-92b* View Gene Set 2.586e-07 648 1.414e-05 13 microRNA targets for hsa-miR-92b* from mirbase.targets www.mirbase.org...
Null hsa-miR-560 View Gene Set 8.083e-07 730 3.831e-05 14 microRNA targets for hsa-miR-560 from mirbase.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 7.734e-07 722 3.831e-05 14 microRNA targets for hsa-miR-874 from mirbase.targets www.mirbase.org...
Null hsa-miR-572 View Gene Set 1.319e-06 602 5.86e-05 16 microRNA targets for hsa-miR-572 from mirbase.targets www.mirbase.org...
Null hsa-miR-423-5p View Gene Set 1.934e-06 767 8.087e-05 17 microRNA targets for hsa-miR-423-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 4.192e-06 739 0.0001656 18 microRNA targets for hsa-miR-24 from mirbase.targets www.mirbase.org...
Null hsa-miR-525-3p View Gene Set 5.722e-06 790 0.0002034 19 microRNA targets for hsa-miR-525-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-937 View Gene Set 5.629e-06 654 0.0002034 19 microRNA targets for hsa-miR-937 from mirbase.targets www.mirbase.org...
Null hsa-miR-326 View Gene Set 6.421e-06 650 0.0002174 21 microRNA targets for hsa-miR-326 from mirbase.targets www.mirbase.org...
Null hsa-miR-675 View Gene Set 6.85e-06 686 0.0002214 22 microRNA targets for hsa-miR-675 from mirbase.targets www.mirbase.org...
Null hsa-miR-139-3p View Gene Set 8.213e-06 736 0.0002539 23 microRNA targets for hsa-miR-139-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-668 View Gene Set 8.594e-06 560 0.0002546 24 microRNA targets for hsa-miR-668 from mirbase.targets www.mirbase.org...
Null hsa-miR-541 View Gene Set 1.098e-05 711 0.0003122 25 microRNA targets for hsa-miR-541 from mirbase.targets www.mirbase.org...
Null hsa-miR-940 View Gene Set 1.176e-05 660 0.0003217 26 microRNA targets for hsa-miR-940 from mirbase.targets www.mirbase.org...
Null hsa-miR-339-3p View Gene Set 1.39e-05 797 0.0003662 27 microRNA targets for hsa-miR-339-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-524-3p View Gene Set 1.881e-05 791 0.0004776 28 microRNA targets for hsa-miR-524-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-638 View Gene Set 2.856e-05 639 0.0007001 29 microRNA targets for hsa-miR-638 from mirbase.targets www.mirbase.org...
Null hsa-miR-939 View Gene Set 3.288e-05 667 0.0007793 30 microRNA targets for hsa-miR-939 from mirbase.targets www.mirbase.org...
Null hsa-miR-185* View Gene Set 3.925e-05 506 0.0008973 31 microRNA targets for hsa-miR-185* from mirbase.targets www.mirbase.org...
Null hsa-miR-339-5p View Gene Set 4.291e-05 659 0.0008973 31 microRNA targets for hsa-miR-339-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-564 View Gene Set 4.239e-05 706 0.0008973 31 microRNA targets for hsa-miR-564 from mirbase.targets www.mirbase.org...
Null hsa-miR-933 View Gene Set 4.271e-05 618 0.0008973 31 microRNA targets for hsa-miR-933 from mirbase.targets www.mirbase.org...
Null hsa-miR-331-3p View Gene Set 4.886e-05 712 0.0009925 35 microRNA targets for hsa-miR-331-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 6.274e-05 788 0.001239 36 microRNA targets for hsa-miR-324-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-214 View Gene Set 7.022e-05 797 0.001349 37 microRNA targets for hsa-miR-214 from mirbase.targets www.mirbase.org...
Null hsa-miR-639 View Gene Set 7.266e-05 561 0.00136 38 microRNA targets for hsa-miR-639 from mirbase.targets www.mirbase.org...
Null hsa-miR-596 View Gene Set 8.363e-05 644 0.001495 39 microRNA targets for hsa-miR-596 from mirbase.targets www.mirbase.org...
Null hsa-miR-612 View Gene Set 8.408e-05 685 0.001495 39 microRNA targets for hsa-miR-612 from mirbase.targets www.mirbase.org...
Null hsa-miR-146b-3p View Gene Set 9.946e-05 695 0.001725 41 microRNA targets for hsa-miR-146b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-650 View Gene Set 0.0001115 693 0.001888 42 microRNA targets for hsa-miR-650 from mirbase.targets www.mirbase.org...
Null hsa-miR-423-3p View Gene Set 0.0001313 741 0.002121 43 microRNA targets for hsa-miR-423-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-766 View Gene Set 0.0001302 517 0.002121 43 microRNA targets for hsa-miR-766 from mirbase.targets www.mirbase.org...
Null hsa-miR-151-5p View Gene Set 0.0001511 749 0.002387 45 microRNA targets for hsa-miR-151-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-342-5p View Gene Set 0.0002005 698 0.003033 46 microRNA targets for hsa-miR-342-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-525-5p View Gene Set 0.0001978 784 0.003033 46 microRNA targets for hsa-miR-525-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-532-3p View Gene Set 0.0002316 657 0.00343 48 microRNA targets for hsa-miR-532-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-492 View Gene Set 0.0002467 625 0.00358 49 microRNA targets for hsa-miR-492 from mirbase.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 0.0002692 728 0.003829 50 microRNA targets for hsa-miR-330-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-346 View Gene Set 0.0002871 568 0.003925 51 microRNA targets for hsa-miR-346 from mirbase.targets www.mirbase.org...
Null hsa-miR-615-3p View Gene Set 0.0002849 757 0.003925 51 microRNA targets for hsa-miR-615-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-886-5p View Gene Set 0.0003027 793 0.004061 53 microRNA targets for hsa-miR-886-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-504 View Gene Set 0.0003268 621 0.004303 54 microRNA targets for hsa-miR-504 from mirbase.targets www.mirbase.org...
Null hsa-miR-658 View Gene Set 0.000343 660 0.004434 55 microRNA targets for hsa-miR-658 from mirbase.targets www.mirbase.org...
Null hsa-miR-654-5p View Gene Set 0.0003872 718 0.004916 56 microRNA targets for hsa-miR-654-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-602 View Gene Set 0.0004205 710 0.005245 57 microRNA targets for hsa-miR-602 from mirbase.targets www.mirbase.org...
Null hsa-miR-631 View Gene Set 0.0005039 714 0.006177 58 microRNA targets for hsa-miR-631 from mirbase.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.0005442 710 0.006558 59 microRNA targets for hsa-miR-370 from mirbase.targets www.mirbase.org...
Null hsa-miR-665 View Gene Set 0.0006311 617 0.007479 60 microRNA targets for hsa-miR-665 from mirbase.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.0006531 602 0.007612 61 microRNA targets for hsa-miR-149 from mirbase.targets www.mirbase.org...
Null hsa-miR-885-3p View Gene Set 0.0006917 799 0.007932 62 microRNA targets for hsa-miR-885-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-920 View Gene Set 0.0007311 661 0.008251 63 microRNA targets for hsa-miR-920 from mirbase.targets www.mirbase.org...
Null hsa-miR-503 View Gene Set 0.000798 748 0.008865 64 microRNA targets for hsa-miR-503 from mirbase.targets www.mirbase.org...
Null hsa-miR-25* View Gene Set 0.0008298 418 0.009077 65 microRNA targets for hsa-miR-25* from mirbase.targets www.mirbase.org...
Null hsa-miR-611 View Gene Set 0.0009266 671 0.009982 66 microRNA targets for hsa-miR-611 from mirbase.targets www.mirbase.org...
Null hsa-miR-92a-2* View Gene Set 0.0009466 654 0.01005 67 microRNA targets for hsa-miR-92a-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-485-5p View Gene Set 0.0009887 556 0.01034 68 microRNA targets for hsa-miR-485-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-149* View Gene Set 0.00115 459 0.01185 69 microRNA targets for hsa-miR-149* from mirbase.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.001243 795 0.01227 70 microRNA targets for hsa-miR-15b from mirbase.targets www.mirbase.org...
Null hsa-miR-323-5p View Gene Set 0.001235 763 0.01227 70 microRNA targets for hsa-miR-323-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-671-5p View Gene Set 0.001241 813 0.01227 70 microRNA targets for hsa-miR-671-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 0.001435 672 0.01398 73 microRNA targets for hsa-miR-637 from mirbase.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.001512 770 0.01452 74 microRNA targets for hsa-miR-133b from mirbase.targets www.mirbase.org...
Null hsa-miR-220 View Gene Set 0.001559 748 0.01477 75 microRNA targets for hsa-miR-220 from mirbase.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 0.001806 763 0.0169 76 microRNA targets for hsa-miR-133a from mirbase.targets www.mirbase.org...
Null hsa-miR-769-5p View Gene Set 0.001916 790 0.0177 77 microRNA targets for hsa-miR-769-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.002574 780 0.02347 78 microRNA targets for hsa-miR-16 from mirbase.targets www.mirbase.org...
Null hsa-miR-199a-5p View Gene Set 0.00269 826 0.024 79 microRNA targets for hsa-miR-199a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-520a-5p View Gene Set 0.0027 933 0.024 79 microRNA targets for hsa-miR-520a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-191* View Gene Set 0.00274 462 0.02405 81 microRNA targets for hsa-miR-191* from mirbase.targets www.mirbase.org...
Null hsa-miR-604 View Gene Set 0.003004 691 0.02604 82 microRNA targets for hsa-miR-604 from mirbase.targets www.mirbase.org...
Null hsa-miR-298 View Gene Set 0.003295 716 0.02823 83 microRNA targets for hsa-miR-298 from mirbase.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 0.003356 817 0.02841 84 microRNA targets for hsa-miR-125a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-214* View Gene Set 0.00344 434 0.02877 85 microRNA targets for hsa-miR-214* from mirbase.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 0.003573 831 0.02954 86 microRNA targets for hsa-miR-125b from mirbase.targets www.mirbase.org...
Null hsa-miR-565 View Gene Set 0.003665 689 0.02996 87 microRNA targets for hsa-miR-565 from mirbase.targets www.mirbase.org...
Null hsa-miR-218-1* View Gene Set 0.004071 528 0.03289 88 microRNA targets for hsa-miR-218-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-760 View Gene Set 0.004218 690 0.03334 89 microRNA targets for hsa-miR-760 from mirbase.targets www.mirbase.org...
Null hsa-miR-92a-1* View Gene Set 0.004221 661 0.03334 89 microRNA targets for hsa-miR-92a-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-23a* View Gene Set 0.004382 604 0.03424 91 microRNA targets for hsa-miR-23a* from mirbase.targets www.mirbase.org...
Null hsa-miR-601 View Gene Set 0.00447 699 0.03454 92 microRNA targets for hsa-miR-601 from mirbase.targets www.mirbase.org...
Null hsa-miR-412 View Gene Set 0.004625 627 0.03536 93 microRNA targets for hsa-miR-412 from mirbase.targets www.mirbase.org...
Null hsa-miR-296-3p View Gene Set 0.004892 905 0.03661 94 microRNA targets for hsa-miR-296-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-623 View Gene Set 0.004886 693 0.03661 94 microRNA targets for hsa-miR-623 from mirbase.targets www.mirbase.org...
Null hsa-miR-127-3p View Gene Set 0.005322 653 0.03941 96 microRNA targets for hsa-miR-127-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-198 View Gene Set 0.00558 783 0.04065 97 microRNA targets for hsa-miR-198 from mirbase.targets www.mirbase.org...
Null hsa-miR-574-3p View Gene Set 0.005603 803 0.04065 97 microRNA targets for hsa-miR-574-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-765 View Gene Set 0.005909 674 0.04244 99 microRNA targets for hsa-miR-765 from mirbase.targets www.mirbase.org...
Null hsa-miR-453 View Gene Set 0.006255 702 0.04404 100 microRNA targets for hsa-miR-453 from mirbase.targets www.mirbase.org...
Null hsa-miR-662 View Gene Set 0.006213 663 0.04404 100 microRNA targets for hsa-miR-662 from mirbase.targets www.mirbase.org...
Null hsa-miR-128a View Gene Set 0.006438 811 0.04488 102 microRNA targets for hsa-miR-128a from mirbase.targets www.mirbase.org...
Null hsa-miR-220b View Gene Set 0.006702 852 0.04582 103 microRNA targets for hsa-miR-220b from mirbase.targets www.mirbase.org...
Null hsa-miR-647 View Gene Set 0.006662 724 0.04582 103 microRNA targets for hsa-miR-647 from mirbase.targets www.mirbase.org...
Null hsa-miR-33b* View Gene Set 0.007104 577 0.0481 105 microRNA targets for hsa-miR-33b* from mirbase.targets www.mirbase.org...
Null hsa-miR-432* View Gene Set 0.00736 544 0.04891 106 microRNA targets for hsa-miR-432* from mirbase.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.007359 805 0.04891 106 microRNA targets for hsa-miR-497 from mirbase.targets www.mirbase.org...
Null hsa-miR-744* View Gene Set 0.007431 472 0.04892 108 microRNA targets for hsa-miR-744* from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-608 View Gene Set 7.638e-06 308 0.004224 1 microRNA targets for hsa-miR-608 from mirtarget2.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-182 View Gene Set 0.0003135 552 0.02934 1 microRNA targets for hsa-miR-182 from pictar.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.0009564 558 0.02934 1 microRNA targets for hsa-miR-29a from pictar.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.0005139 559 0.02934 1 microRNA targets for hsa-miR-29b from pictar.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.000989 564 0.02934 1 microRNA targets for hsa-miR-29c from pictar.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 0.0005998 130 0.02934 1 microRNA targets for hsa-miR-324-3p from pictar.targets www.mirbase.org...
Null hsa-miR-339 View Gene Set 0.0006811 155 0.02934 1 microRNA targets for hsa-miR-339 from pictar.targets www.mirbase.org...
Null hsa-miR-219 View Gene Set 0.001699 188 0.03993 7 microRNA targets for hsa-miR-219 from pictar.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 0.001795 595 0.03993 7 microRNA targets for hsa-miR-96 from pictar.targets www.mirbase.org...

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-124 View Gene Set 2.418e-06 1299 0.000244 1 microRNA targets for hsa-miR-124 from targetscan.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 2.418e-06 1299 0.000244 1 microRNA targets for hsa-miR-506 from targetscan.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 3e-06 936 0.000244 1 microRNA targets for hsa-miR-9 from targetscan.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 5.765e-06 439 0.0003516 4 microRNA targets for hsa-miR-24 from targetscan.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 1.533e-05 604 0.0006234 5 microRNA targets for hsa-miR-125a-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 1.533e-05 604 0.0006234 5 microRNA targets for hsa-miR-125b from targetscan.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-106a from targetscan.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-106b from targetscan.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-17 from targetscan.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 6.223e-05 841 0.001268 7 microRNA targets for hsa-miR-182 from targetscan.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-20a from targetscan.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-20b from targetscan.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-519d from targetscan.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 7.273e-05 986 0.001268 7 microRNA targets for hsa-miR-93 from targetscan.targets www.mirbase.org...
Null hsa-miR-1271 View Gene Set 0.0005336 787 0.007369 15 microRNA targets for hsa-miR-1271 from targetscan.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.000604 850 0.007369 15 microRNA targets for hsa-miR-29a from targetscan.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.000604 850 0.007369 15 microRNA targets for hsa-miR-29b from targetscan.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.000604 850 0.007369 15 microRNA targets for hsa-miR-29c from targetscan.targets www.mirbase.org...
Null hsa-miR-485-5p View Gene Set 0.0005453 198 0.007369 15 microRNA targets for hsa-miR-485-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 0.0005336 787 0.007369 15 microRNA targets for hsa-miR-96 from targetscan.targets www.mirbase.org...
Null hsa-miR-326 View Gene Set 0.0007378 275 0.008183 21 microRNA targets for hsa-miR-326 from targetscan.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 0.0007378 275 0.008183 21 microRNA targets for hsa-miR-330-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 0.0008078 522 0.00857 23 microRNA targets for hsa-miR-448 from targetscan.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.001468 549 0.01492 24 microRNA targets for hsa-miR-153 from targetscan.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.00161 265 0.01571 25 microRNA targets for hsa-miR-149 from targetscan.targets www.mirbase.org...
Null hsa-miR-128 View Gene Set 0.00229 785 0.02149 26 microRNA targets for hsa-miR-128 from targetscan.targets www.mirbase.org...
Null hsa-miR-143 View Gene Set 0.003346 263 0.03024 27 microRNA targets for hsa-miR-143 from targetscan.targets www.mirbase.org...
Null hsa-miR-126 View Gene Set 0.004745 17 0.0386 28 microRNA targets for hsa-miR-126 from targetscan.targets www.mirbase.org...
Null hsa-miR-551a View Gene Set 0.004626 5 0.0386 28 microRNA targets for hsa-miR-551a from targetscan.targets www.mirbase.org...
Null hsa-miR-551b View Gene Set 0.004626 5 0.0386 28 microRNA targets for hsa-miR-551b from targetscan.targets www.mirbase.org...
Null hsa-miR-33a View Gene Set 0.005485 264 0.04183 31 microRNA targets for hsa-miR-33a from targetscan.targets www.mirbase.org...
Null hsa-miR-33b View Gene Set 0.005485 264 0.04183 31 microRNA targets for hsa-miR-33b from targetscan.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 0.006339 152 0.04687 33 microRNA targets for hsa-miR-874 from targetscan.targets www.mirbase.org...
Null hsa-miR-140-5p View Gene Set 0.00682 251 0.04894 34 microRNA targets for hsa-miR-140-5p from targetscan.targets www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p View Gene Set 1.105e-14 1519 2.557e-11 1 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p View Gene Set 2.346e-14 2545 2.714e-11 2 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p View Gene Set 4.878e-13 1764 3.763e-10 3 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 View Gene Set 7.574e-13 3384 4.381e-10 4 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 View Gene Set 2.7e-12 1582 8.924e-10 5 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 View Gene Set 2.632e-12 1840 8.924e-10 5 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 View Gene Set 2.077e-12 1806 8.924e-10 5 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 View Gene Set 2.671e-11 1858 7.727e-09 8 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-328 View Gene Set 4.801e-11 1892 1.234e-08 9 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 View Gene Set 1.778e-10 2729 4.115e-08 10 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-24 View Gene Set 3.338e-10 1220 7.022e-08 11 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 View Gene Set 5.81e-10 1838 1.12e-07 12 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 View Gene Set 7.878e-10 1378 1.402e-07 13 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 View Gene Set 1.126e-09 946 1.862e-07 14 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 1.937e-09 2258 2.801e-07 15 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 1.836e-09 1108 2.801e-07 15 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 View Gene Set 2.297e-09 2615 3.127e-07 17 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-484 View Gene Set 3.962e-09 1853 5.075e-07 18 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-484 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 View Gene Set 4.167e-09 2846 5.075e-07 18 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-765 View Gene Set 6.415e-09 3105 7.423e-07 20 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-765 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-324-5p View Gene Set 9.893e-09 1488 1.09e-06 21 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-5p View Gene Set 1.036e-08 1516 1.09e-06 22 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-24 View Gene Set 1.176e-08 2189 1.183e-06 23 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-874 View Gene Set 1.454e-08 1362 1.346e-06 24 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-24 View Gene Set 1.411e-08 1215 1.346e-06 24 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874 View Gene Set 1.799e-08 975 1.601e-06 26 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-24 View Gene Set 2.235e-08 2089 1.916e-06 27 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 View Gene Set 2.569e-08 872 2.123e-06 28 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-149 View Gene Set 2.751e-08 2201 2.195e-06 29 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 2.958e-08 1941 2.269e-06 30 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125b View Gene Set 3.138e-08 2046 2.269e-06 30 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-324-5p View Gene Set 3.09e-08 1517 2.269e-06 30 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p View Gene Set 4.557e-08 2496 3.101e-06 33 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-149 View Gene Set 4.489e-08 2200 3.101e-06 33 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-328 View Gene Set 5.264e-08 1458 3.48e-06 35 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-361-3p View Gene Set 5.894e-08 2123 3.686e-06 36 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-361-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-24 View Gene Set 5.837e-08 2222 3.686e-06 36 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-5p View Gene Set 6.116e-08 2173 3.724e-06 38 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p View Gene Set 7.023e-08 1865 4.167e-06 39 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-149 View Gene Set 9.044e-08 2203 5.207e-06 40 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-602 View Gene Set 9.226e-08 1257 5.207e-06 40 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-602 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-24 View Gene Set 1.12e-07 1137 6.172e-06 42 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146b-3p View Gene Set 1.168e-07 1606 6.178e-06 43 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146b-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 View Gene Set 1.175e-07 916 6.178e-06 43 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p View Gene Set 2.507e-07 1790 1.289e-05 45 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-766 View Gene Set 2.95e-07 2106 1.484e-05 46 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-766 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-638 View Gene Set 3.184e-07 1054 1.535e-05 47 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-638 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 View Gene Set 3.164e-07 1108 1.535e-05 47 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-3p View Gene Set 3.338e-07 1648 1.576e-05 49 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-24 View Gene Set 3.41e-07 989 1.578e-05 50 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572 View Gene Set 3.517e-07 825 1.59e-05 51 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 View Gene Set 3.573e-07 1071 1.59e-05 51 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-524-3p View Gene Set 3.825e-07 1058 1.639e-05 53 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-524-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-668 View Gene Set 3.823e-07 1225 1.639e-05 53 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-668 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p View Gene Set 4.146e-07 1946 1.744e-05 55 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612 View Gene Set 4.374e-07 2970 1.807e-05 56 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-328 View Gene Set 6.255e-07 1435 2.539e-05 57 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 View Gene Set 6.762e-07 1065 2.698e-05 58 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-125b View Gene Set 6.963e-07 1547 2.731e-05 59 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-933 View Gene Set 7.9e-07 854 3.047e-05 60 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-933 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125b View Gene Set 8.661e-07 1512 3.286e-05 61 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-665 View Gene Set 9.358e-07 2514 3.437e-05 62 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-665 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-24 View Gene Set 9.305e-07 938 3.437e-05 62 microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p View Gene Set 1.305e-06 2574 4.717e-05 64 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-328 View Gene Set 1.434e-06 1394 5.106e-05 65 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-5p View Gene Set 1.487e-06 886 5.214e-05 66 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541 View Gene Set 1.587e-06 1832 5.481e-05 67 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-342-5p View Gene Set 1.614e-06 1470 5.491e-05 68 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-342-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-658 View Gene Set 1.879e-06 1603 6.302e-05 69 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-658 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-326 View Gene Set 2.001e-06 2156 6.615e-05 70 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-125b View Gene Set 2.143e-06 1969 6.984e-05 71 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-324-5p View Gene Set 2.318e-06 892 7.451e-05 72 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-149 View Gene Set 2.584e-06 1859 8.192e-05 73 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p View Gene Set 2.765e-06 1899 8.648e-05 74 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p View Gene Set 3.789e-06 1675 0.0001169 75 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 View Gene Set 3.94e-06 2504 0.0001184 76 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-24 View Gene Set 3.936e-06 1845 0.0001184 76 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-125b View Gene Set 4.087e-06 1421 0.0001212 78 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-326 View Gene Set 4.398e-06 2171 0.0001271 79 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 4.45e-06 1505 0.0001271 79 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-149 View Gene Set 4.363e-06 1882 0.0001271 79 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 4.964e-06 574 0.0001401 82 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 5.578e-06 1760 0.0001555 83 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125b View Gene Set 6.027e-06 1849 0.0001642 84 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 View Gene Set 6.03e-06 1066 0.0001642 84 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-151-5p View Gene Set 6.483e-06 1244 0.0001744 86 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-151-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p View Gene Set 6.795e-06 1142 0.0001807 87 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214 View Gene Set 7.385e-06 1354 0.0001942 88 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 7.995e-06 1096 0.0002079 89 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p View Gene Set 8.17e-06 2597 0.0002101 90 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p View Gene Set 9.736e-06 1187 0.0002476 91 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125a-5p View Gene Set 1.091e-05 1986 0.0002735 92 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-324-5p View Gene Set 1.099e-05 934 0.0002735 92 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-149 View Gene Set 1.313e-05 1883 0.0003233 94 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 View Gene Set 1.364e-05 1071 0.0003289 95 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650 View Gene Set 1.371e-05 2314 0.0003289 95 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p View Gene Set 1.379e-05 1681 0.0003289 95 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p View Gene Set 1.399e-05 1485 0.0003303 98 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p View Gene Set 1.45e-05 1375 0.0003389 99 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-525-3p View Gene Set 1.696e-05 1112 0.0003925 100 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-525-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-214 View Gene Set 2.103e-05 2823 0.0004817 101 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326 View Gene Set 2.123e-05 2147 0.0004817 101 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 View Gene Set 2.421e-05 1420 0.0005439 103 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-370 View Gene Set 2.562e-05 2143 0.0005592 104 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-370 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-24 View Gene Set 2.542e-05 1840 0.0005592 104 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b View Gene Set 2.538e-05 1376 0.0005592 104 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 View Gene Set 2.711e-05 2252 0.0005863 107 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-139-3p View Gene Set 2.942e-05 1002 0.0006304 108 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-139-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 View Gene Set 3.025e-05 820 0.0006422 109 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-125b View Gene Set 3.653e-05 1428 0.0007684 110 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 View Gene Set 3.858e-05 1389 0.0008042 111 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-214 View Gene Set 4.045e-05 2832 0.0008306 112 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-133b View Gene Set 4.056e-05 1357 0.0008306 112 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-133b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-296-3p View Gene Set 4.21e-05 2354 0.0008502 114 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-506 View Gene Set 4.225e-05 2120 0.0008502 114 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 4.449e-05 571 0.0008874 116 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-24 View Gene Set 4.631e-05 692 0.0009158 117 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 View Gene Set 4.858e-05 1017 0.0009526 118 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-133a View Gene Set 5.069e-05 1343 0.0009857 119 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-133a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-491-5p View Gene Set 5.421e-05 1882 0.001045 120 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-491-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p View Gene Set 6.256e-05 1044 0.001196 121 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-3p View Gene Set 6.577e-05 2397 0.001248 122 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-485-5p View Gene Set 7.721e-05 969 0.001453 123 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-125b View Gene Set 8.227e-05 795 0.001535 124 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p View Gene Set 8.985e-05 1053 0.001663 125 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-601 View Gene Set 0.0001018 1475 0.001859 126 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-601 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-24 View Gene Set 0.000102 1680 0.001859 126 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001064 1909 0.001908 128 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001063 1448 0.001908 128 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p View Gene Set 0.0001108 1458 0.001971 130 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-491-5p View Gene Set 0.000116 1937 0.002015 131 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-491-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-24 View Gene Set 0.0001183 1812 0.002015 131 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-24 View Gene Set 0.0001184 1711 0.002015 131 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001167 2020 0.002015 131 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001168 1965 0.002015 131 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-20b View Gene Set 0.0001143 1139 0.002015 131 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001432 2056 0.002418 137 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-503 View Gene Set 0.0001805 1589 0.003027 138 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-503 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001926 2458 0.003207 139 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-504 View Gene Set 0.0001985 1464 0.00328 140 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-504 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 View Gene Set 0.0002028 1484 0.003329 141 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-370 View Gene Set 0.0002059 2126 0.003355 142 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-370 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-198 View Gene Set 0.0002302 2133 0.003725 143 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-198 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-149 View Gene Set 0.0002341 975 0.003761 144 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-412 View Gene Set 0.0002552 1710 0.004065 145 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-412 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p View Gene Set 0.0002565 1618 0.004065 145 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-149 View Gene Set 0.0002887 940 0.004545 147 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p View Gene Set 0.0003194 764 0.004995 148 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-504 View Gene Set 0.0003248 1489 0.005044 149 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-504 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-485-5p View Gene Set 0.0003324 2231 0.005095 150 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p View Gene Set 0.0003324 2177 0.005095 150 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-491-5p View Gene Set 0.0003741 1429 0.005696 152 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-491-5p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 0.0004001 1260 0.006052 153 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-214 View Gene Set 0.000406 2872 0.006101 154 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p View Gene Set 0.0004337 954 0.006474 155 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-492 View Gene Set 0.0004793 1377 0.00711 156 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-492 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b View Gene Set 0.0005069 1252 0.007472 157 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-506 View Gene Set 0.0005665 2522 0.008297 158 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-503 View Gene Set 0.0006197 1743 0.009019 159 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-503 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-133a View Gene Set 0.000625 1270 0.009039 160 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-133a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-5p View Gene Set 0.0006682 2249 0.009604 161 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-506 View Gene Set 0.0006914 1985 0.009876 162 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-346 View Gene Set 0.0007616 1502 0.01081 163 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-34a View Gene Set 0.0007824 1217 0.01104 164 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-34a from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-34a View Gene Set 0.0008435 1435 0.01183 165 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-34a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-326 View Gene Set 0.000851 1813 0.01186 166 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 View Gene Set 0.0008813 834 0.01221 167 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-346 View Gene Set 0.0009054 1493 0.01247 168 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-15a View Gene Set 0.0009203 2659 0.0126 169 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-485-5p View Gene Set 0.0009353 2302 0.01273 170 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-631 View Gene Set 0.001002 1374 0.01356 171 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-631 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-133b View Gene Set 0.001012 1276 0.01361 172 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-133b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-138 View Gene Set 0.001029 2339 0.01377 173 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-346 View Gene Set 0.00104 1521 0.01383 174 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-34a View Gene Set 0.001166 1410 0.01542 175 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-34a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-485-5p View Gene Set 0.001187 2002 0.01561 176 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-220b View Gene Set 0.001217 1647 0.01591 177 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-220b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-34a View Gene Set 0.001241 1346 0.01613 178 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-34a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-204 View Gene Set 0.001255 2428 0.01623 179 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-642 View Gene Set 0.001298 2012 0.01666 180 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-642 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-193b View Gene Set 0.001303 1496 0.01666 180 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-193b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-193b View Gene Set 0.00134 1463 0.01704 182 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-193b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-3p View Gene Set 0.001368 2295 0.01729 183 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-3p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29b View Gene Set 0.001426 977 0.01794 184 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29b from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 0.001435 1208 0.01795 185 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-449a View Gene Set 0.001452 1241 0.01807 186 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-449a from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29a View Gene Set 0.001544 970 0.01911 187 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-29a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-455-3p View Gene Set 0.001593 1801 0.01961 188 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-455-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p View Gene Set 0.001657 1112 0.02029 189 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p View Gene Set 0.001702 1113 0.02062 190 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-34c-5p View Gene Set 0.0017 1396 0.02062 190 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-34c-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-15b View Gene Set 0.001722 2623 0.02075 192 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-15b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-138 View Gene Set 0.001817 2152 0.02168 193 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-138 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-370 View Gene Set 0.001816 1067 0.02168 193 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-370 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-24 View Gene Set 0.001835 481 0.02178 195 microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-15b View Gene Set 0.00189 2993 0.02225 196 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-15b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-204 View Gene Set 0.001894 2477 0.02225 196 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-923 View Gene Set 0.001937 1070 0.02262 198 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-923 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20b View Gene Set 0.001945 1402 0.02262 198 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-133b View Gene Set 0.001961 1143 0.02269 200 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-133b from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: hprdBatch.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 1.301e-05 437 0.0002603 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 0.0005354 80 0.005354 2 From NetPath for IL-6 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 0.001498 792 0.009989 3 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 0.00768 130 0.0384 4 From NetPath for IL-5 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 3.378e-05 161 0.0004005 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 4.216e-05 291 0.0004005 1 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.006929 98 0.04388 3 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 0.009724 739 0.04619 4 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 1.82e-08 586 3.641e-07 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 0.0001499 1296 0.001499 2 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 0.002251 105 0.01501 3 From NetPath for IL-6 Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 0.006826 233 0.02275 4 From NetPath for IL-1 Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 0.005456 685 0.02275 4 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null IL-4 Signaling Pathway View Gene Set 0.005824 301 0.02275 4 From NetPath for IL-4 Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 0.0104 139 0.0297 7 From NetPath for IL-5 Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.01394 253 0.03485 8 From NetPath for EGFR1 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 9.018e-07 212 2.164e-05 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null FSH View Gene Set 1.684e-05 164 0.0002021 2 From NetPath for FSH www.netpath.org...
Null TSH View Gene Set 0.001712 48 0.0137 3 From NetPath for TSH www.netpath.org...
Null TNFalpha View Gene Set 0.002993 113 0.01796 4 From NetPath for TNFalpha www.netpath.org...
Null Wnt View Gene Set 0.003823 36 0.01835 5 From NetPath for Wnt www.netpath.org...

Gene Set Collection: hprdManual.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL2 View Gene Set 3.847e-05 297 0.000731 1 From NetPath for IL2 www.netpath.org...
Null TCR View Gene Set 0.0001406 178 0.001335 2 From NetPath for TCR www.netpath.org...
Null TGF_beta_Receptor View Gene Set 0.001831 399 0.0116 3 From NetPath for TGF_beta_Receptor www.netpath.org...

Gene Set Collection: hprdManual.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 2.795e-07 594 6.707e-06 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null FSH View Gene Set 1.598e-06 263 1.917e-05 2 From NetPath for FSH www.netpath.org...
Null TSH View Gene Set 0.0006219 90 0.004975 3 From NetPath for TSH www.netpath.org...
Null TNFalpha View Gene Set 0.002 121 0.012 4 From NetPath for TNFalpha www.netpath.org...

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null V_RFX1_02 View Gene Set 2.748e-07 364 5.854e-05 1 List of genes containing a conserved (FDR < 0.1%) V$RFX1_02 TFBS located within 3 kb around the TSS for the RFX1 transcription factor www.gene-regula...
Null V_AP1_01 View Gene Set 0.0001367 169 0.01455 2 List of genes containing a conserved (FDR < 0.1%) V$AP1_01 TFBS located within 3 kb around the TSS for the AP-1 transcription factor www.gene-regula...
Null V_NFE2_01 View Gene Set 0.0002463 213 0.01748 3 List of genes containing a conserved (FDR < 0.1%) V$NFE2_01 TFBS located within 3 kb around the TSS for the NF-E2 transcription factor www.gene-regula...
Null V_FREAC2_01 View Gene Set 0.0004979 227 0.02651 4 List of genes containing a conserved (FDR < 0.1%) V$FREAC2_01 TFBS located within 3 kb around the TSS for the FOXF2 transcription factor www.gene-regula...
Null V_COUP_01 View Gene Set 0.0008838 251 0.03138 5 List of genes containing a conserved (FDR < 0.1%) V$COUP_01 TFBS located within 3 kb around the TSS for the COUP-TF1 transcription factor www.gene-regula...
Null V_PAX3_01 View Gene Set 0.0007398 161 0.03138 5 List of genes containing a conserved (FDR < 0.1%) V$PAX3_01 TFBS located within 3 kb around the TSS for the Pax-3 transcription factor www.gene-regula...
Null V_BACH1_01 View Gene Set 0.001633 306 0.03478 7 List of genes containing a conserved (FDR < 0.1%) V$BACH1_01 TFBS located within 3 kb around the TSS for the Bach1 transcription factor www.gene-regula...
Null V_FOXO1_02 View Gene Set 0.001146 273 0.03478 7 List of genes containing a conserved (FDR < 0.1%) V$FOXO1_02 TFBS located within 3 kb around the TSS for the FOXO1a transcription factor www.gene-regula...
Null V_PAX4_01 View Gene Set 0.001568 49 0.03478 7 List of genes containing a conserved (FDR < 0.1%) V$PAX4_01 TFBS located within 3 kb around the TSS for the Pax-4a transcription factor www.gene-regula...
Null V_PPARG_02 View Gene Set 0.0014 151 0.03478 7 List of genes containing a conserved (FDR < 0.1%) V$PPARG_02 TFBS located within 3 kb around the TSS for the PPAR-gamma1 transcription factor www.gene-regula...