Results

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Go to: Gene Set Collection: KEGG
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AFA results for: TSA1-e07.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04145 View Gene Set 2.681e-08 158 5.738e-06 1 Phagosome www.genome.jp/d...
KEGG 04142 View Gene Set 6.003e-07 121 4.247e-05 2 Lysosome www.genome.jp/d...
KEGG 04360 View Gene Set 6.324e-07 129 4.247e-05 2 Axon guidance www.genome.jp/d...
KEGG 05110 View Gene Set 7.938e-07 56 4.247e-05 2 Vibrio cholerae infection www.genome.jp/d...
KEGG 00100 View Gene Set 4.068e-06 17 0.0001598 5 Steroid biosynthesis www.genome.jp/d...
KEGG 04070 View Gene Set 4.48e-06 78 0.0001598 5 Phosphatidylinositol signaling system www.genome.jp/d...
KEGG 04514 View Gene Set 1.34e-05 135 0.0004097 7 Cell adhesion molecules (CAMs) www.genome.jp/d...
KEGG 04144 View Gene Set 3.152e-05 205 0.0006746 8 Endocytosis www.genome.jp/d...
KEGG 04650 View Gene Set 3.038e-05 137 0.0006746 8 Natural killer cell mediated cytotoxicity www.genome.jp/d...
KEGG 04670 View Gene Set 2.796e-05 118 0.0006746 8 Leukocyte transendothelial migration www.genome.jp/d...
KEGG 04971 View Gene Set 3.512e-05 74 0.0006833 11 Gastric acid secretion www.genome.jp/d...
KEGG 04612 View Gene Set 6.995e-05 78 0.001248 12 Antigen processing and presentation www.genome.jp/d...
KEGG 00330 View Gene Set 9.848e-05 54 0.001621 13 Arginine and proline metabolism www.genome.jp/d...
KEGG 04960 View Gene Set 0.0001512 42 0.002311 14 Aldosterone-regulated sodium reabsorption www.genome.jp/d...
KEGG 00562 View Gene Set 0.0002133 57 0.002958 15 Inositol phosphate metabolism www.genome.jp/d...
KEGG 04910 View Gene Set 0.000231 137 0.002958 15 Insulin signaling pathway www.genome.jp/d...
KEGG 04966 View Gene Set 0.000235 27 0.002958 15 Collecting duct acid secretion www.genome.jp/d...
KEGG 04062 View Gene Set 0.0003434 189 0.004083 18 Chemokine signaling pathway www.genome.jp/d...
KEGG 04010 View Gene Set 0.0003968 267 0.004469 19 MAPK signaling pathway www.genome.jp/d...
KEGG 04664 View Gene Set 0.0005404 79 0.005782 20 Fc epsilon RI signaling pathway www.genome.jp/d...
KEGG 00280 View Gene Set 0.0007075 44 0.006736 21 Valine leucine and isoleucine degradation www.genome.jp/d...
KEGG 04520 View Gene Set 0.0007239 75 0.006736 21 Adherens junction www.genome.jp/d...
KEGG 04530 View Gene Set 0.0006691 134 0.006736 21 Tight junction www.genome.jp/d...
KEGG 04666 View Gene Set 0.0007768 95 0.006926 24 Fc gamma R-mediated phagocytosis www.genome.jp/d...
KEGG 05100 View Gene Set 0.001305 73 0.01117 25 Bacterial invasion of epithelial cells www.genome.jp/d...
KEGG 00071 View Gene Set 0.001424 42 0.01172 26 Fatty acid metabolism www.genome.jp/d...
KEGG 04964 View Gene Set 0.001982 23 0.01571 27 Proximal tubule bicarbonate reclamation www.genome.jp/d...
KEGG 04660 View Gene Set 0.002212 108 0.01691 28 T cell receptor signaling pathway www.genome.jp/d...
KEGG 05221 View Gene Set 0.002299 60 0.01697 29 Acute myeloid leukemia www.genome.jp/d...
KEGG 04912 View Gene Set 0.002804 101 0.02 30 GnRH signaling pathway www.genome.jp/d...
KEGG 01100 View Gene Set 0.002902 1120 0.02003 31 Metabolic pathways www.genome.jp/d...
KEGG 00600 View Gene Set 0.003267 40 0.02118 32 Sphingolipid metabolism www.genome.jp/d...
KEGG 04510 View Gene Set 0.003209 201 0.02118 32 Focal adhesion www.genome.jp/d...
KEGG 04930 View Gene Set 0.004035 47 0.0254 34 Type II diabetes mellitus www.genome.jp/d...
KEGG 01040 View Gene Set 0.00465 21 0.02689 35 Biosynthesis of unsaturated fatty acids www.genome.jp/d...
KEGG 04722 View Gene Set 0.004775 126 0.02689 35 Neurotrophin signaling pathway www.genome.jp/d...
KEGG 05332 View Gene Set 0.004765 43 0.02689 35 Graft-versus-host disease www.genome.jp/d...
KEGG 05412 View Gene Set 0.004608 76 0.02689 35 Arrhythmogenic right ventricular cardiomyopathy (ARVC) www.genome.jp/d...
KEGG 03320 View Gene Set 0.005489 69 0.03012 39 PPAR signaling pathway www.genome.jp/d...
KEGG 05120 View Gene Set 0.005791 68 0.03098 40 Epithelial cell signaling in Helicobacter pylori infection www.genome.jp/d...
KEGG 04810 View Gene Set 0.006187 216 0.03174 41 Regulation of actin cytoskeleton www.genome.jp/d...
KEGG 04940 View Gene Set 0.00623 45 0.03174 41 Type I diabetes mellitus www.genome.jp/d...
KEGG 04020 View Gene Set 0.007112 178 0.03539 43 Calcium signaling pathway www.genome.jp/d...
KEGG 04012 View Gene Set 0.008175 87 0.03887 44 ErbB signaling pathway www.genome.jp/d...
KEGG 04080 View Gene Set 0.008116 272 0.03887 44 Neuroactive ligand-receptor interaction www.genome.jp/d...
KEGG 00910 View Gene Set 0.008762 23 0.04025 46 Nitrogen metabolism www.genome.jp/d...
KEGG 04640 View Gene Set 0.008841 88 0.04025 46 Hematopoietic cell lineage www.genome.jp/d...
KEGG 04916 View Gene Set 0.009134 102 0.04072 48 Melanogenesis www.genome.jp/d...
KEGG 04146 View Gene Set 0.009418 78 0.04113 49 Peroxisome www.genome.jp/d...
KEGG 00450 View Gene Set 0.009685 26 0.04145 50 Selenoamino acid metabolism www.genome.jp/d...
KEGG 04970 View Gene Set 0.01009 89 0.04233 51 Salivary secretion www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0016020 View Gene Set 1.047e-53 7286 1.399e-49 1 membrane amigo.geneontol...
GO GO:0044425 View Gene Set 1.291e-47 6145 8.626e-44 2 membrane part amigo.geneontol...
GO GO:0005886 View Gene Set 7.065e-47 3759 3.146e-43 3 plasma membrane amigo.geneontol...
GO GO:0031224 View Gene Set 4.107e-38 5387 1.372e-34 4 intrinsic to membrane amigo.geneontol...
GO GO:0016021 View Gene Set 6.808e-37 5278 1.819e-33 5 integral to membrane amigo.geneontol...
GO GO:0044459 View Gene Set 8.043e-32 2023 1.791e-28 6 plasma membrane part amigo.geneontol...
GO GO:0032501 View Gene Set 6.029e-23 4631 1.151e-19 7 multicellular organismal process amigo.geneontol...
GO GO:0031226 View Gene Set 1.383e-22 1208 2.309e-19 8 intrinsic to plasma membrane amigo.geneontol...
GO GO:0005887 View Gene Set 5.138e-22 1186 7.628e-19 9 integral to plasma membrane amigo.geneontol...
GO GO:0023052 View Gene Set 2.629e-21 3571 3.513e-18 10 signaling amigo.geneontol...
GO GO:0051179 View Gene Set 1.56e-16 3376 1.894e-13 11 localization amigo.geneontol...
GO GO:0048856 View Gene Set 2.944e-15 2763 3.277e-12 12 anatomical structure development amigo.geneontol...
GO GO:0048731 View Gene Set 3.278e-15 2544 3.369e-12 13 system development amigo.geneontol...
GO GO:0006810 View Gene Set 5.201e-15 2892 4.963e-12 14 transport amigo.geneontol...
GO GO:0044281 View Gene Set 1.58e-14 1698 1.408e-11 15 small molecule metabolic process amigo.geneontol...
GO GO:0023046 View Gene Set 2.787e-14 2577 2.327e-11 16 signaling process amigo.geneontol...
GO GO:0051234 View Gene Set 3.11e-14 2928 2.444e-11 17 establishment of localization amigo.geneontol...
GO GO:0023060 View Gene Set 4.389e-14 2571 3.257e-11 18 signal transmission amigo.geneontol...
GO GO:0007166 View Gene Set 6.265e-14 1497 4.405e-11 19 cell surface receptor linked signaling pathway amigo.geneontol...
GO GO:0000267 View Gene Set 6.791e-14 1077 4.536e-11 20 cell fraction amigo.geneontol...
GO GO:0007275 View Gene Set 1.344e-13 3067 8.548e-11 21 multicellular organismal development amigo.geneontol...
GO GO:0023033 View Gene Set 1.487e-13 2547 9.029e-11 22 signaling pathway amigo.geneontol...
GO GO:0065008 View Gene Set 1.69e-13 1741 9.814e-11 23 regulation of biological quality amigo.geneontol...
GO GO:0005626 View Gene Set 2.38e-13 830 1.325e-10 24 insoluble fraction amigo.geneontol...
GO GO:0004871 View Gene Set 3.326e-13 2128 1.709e-10 25 signal transducer activity amigo.geneontol...
GO GO:0060089 View Gene Set 3.326e-13 2128 1.709e-10 25 molecular transducer activity amigo.geneontol...
GO GO:0032502 View Gene Set 3.642e-13 3351 1.802e-10 27 developmental process amigo.geneontol...
GO GO:0031982 View Gene Set 3.837e-13 718 1.831e-10 28 vesicle amigo.geneontol...
GO GO:0006811 View Gene Set 4.349e-13 829 2.004e-10 29 ion transport amigo.geneontol...
GO GO:0031410 View Gene Set 6.525e-13 688 2.834e-10 30 cytoplasmic vesicle amigo.geneontol...
GO GO:0031988 View Gene Set 6.576e-13 670 2.834e-10 30 membrane-bounded vesicle amigo.geneontol...
GO GO:0050896 View Gene Set 1.057e-12 3765 4.29e-10 32 response to stimulus amigo.geneontol...
GO GO:0005624 View Gene Set 1.06e-12 799 4.29e-10 32 membrane fraction amigo.geneontol...
GO GO:0042221 View Gene Set 1.708e-12 1516 6.521e-10 34 response to chemical stimulus amigo.geneontol...
GO GO:0004872 View Gene Set 1.665e-12 1688 6.521e-10 34 receptor activity amigo.geneontol...
GO GO:0016023 View Gene Set 1.931e-12 651 7.167e-10 36 cytoplasmic membrane-bounded vesicle amigo.geneontol...
GO GO:0007154 View Gene Set 5.182e-12 1687 1.871e-09 37 cell communication amigo.geneontol...
GO GO:0016192 View Gene Set 6.411e-12 672 2.254e-09 38 vesicle-mediated transport amigo.geneontol...
GO GO:0006812 View Gene Set 2.594e-11 587 8.885e-09 39 cation transport amigo.geneontol...
GO GO:0048513 View Gene Set 2.797e-11 1931 9.342e-09 40 organ development amigo.geneontol...
GO GO:0005576 View Gene Set 3.554e-11 2036 1.158e-08 41 extracellular region amigo.geneontol...
GO GO:0006629 View Gene Set 5.086e-11 910 1.618e-08 42 lipid metabolic process amigo.geneontol...
GO GO:0022891 View Gene Set 8.276e-11 823 2.571e-08 43 substrate-specific transmembrane transporter activity amigo.geneontol...
GO GO:0005794 View Gene Set 9.777e-11 893 2.969e-08 44 Golgi apparatus amigo.geneontol...
GO GO:0042995 View Gene Set 1.598e-10 766 4.745e-08 45 cell projection amigo.geneontol...
GO GO:0007165 View Gene Set 2.162e-10 2232 6.278e-08 46 signal transduction amigo.geneontol...
GO GO:0042592 View Gene Set 2.531e-10 844 7.194e-08 47 homeostatic process amigo.geneontol...
GO GO:0022857 View Gene Set 3.526e-10 905 9.814e-08 48 transmembrane transporter activity amigo.geneontol...
GO GO:0048878 View Gene Set 3.996e-10 563 1.075e-07 49 chemical homeostasis amigo.geneontol...
GO GO:0015075 View Gene Set 4.024e-10 715 1.075e-07 49 ion transmembrane transporter activity amigo.geneontol...
GO GO:0030154 View Gene Set 7.133e-10 1834 1.868e-07 51 cell differentiation amigo.geneontol...
GO GO:0003008 View Gene Set 7.954e-10 1632 2.044e-07 52 system process amigo.geneontol...
GO GO:0048869 View Gene Set 9.443e-10 1883 2.38e-07 53 cellular developmental process amigo.geneontol...
GO GO:0032879 View Gene Set 9.885e-10 741 2.446e-07 54 regulation of localization amigo.geneontol...
GO GO:0008324 View Gene Set 1.055e-09 548 2.564e-07 55 cation transmembrane transporter activity amigo.geneontol...
GO GO:0010033 View Gene Set 1.898e-09 903 4.528e-07 56 response to organic substance amigo.geneontol...
GO GO:0007155 View Gene Set 2.978e-09 827 6.859e-07 57 cell adhesion amigo.geneontol...
GO GO:0022610 View Gene Set 2.978e-09 828 6.859e-07 57 biological adhesion amigo.geneontol...
GO GO:0030001 View Gene Set 3.327e-09 496 7.533e-07 59 metal ion transport amigo.geneontol...
GO GO:0007267 View Gene Set 4.021e-09 720 8.953e-07 60 cell-cell signaling amigo.geneontol...
GO GO:0005773 View Gene Set 4.827e-09 286 1.057e-06 61 vacuole amigo.geneontol...
GO GO:0045202 View Gene Set 6.662e-09 371 1.435e-06 62 synapse amigo.geneontol...
GO GO:0005783 View Gene Set 8.364e-09 1024 1.774e-06 63 endoplasmic reticulum amigo.geneontol...
GO GO:0005215 View Gene Set 9.346e-09 1174 1.951e-06 64 transporter activity amigo.geneontol...
GO GO:0007399 View Gene Set 1.272e-08 1174 2.614e-06 65 nervous system development amigo.geneontol...
GO GO:0007169 View Gene Set 1.313e-08 296 2.632e-06 66 transmembrane receptor protein tyrosine kinase signaling pathway amigo.geneontol...
GO GO:0022892 View Gene Set 1.32e-08 964 2.632e-06 66 substrate-specific transporter activity amigo.geneontol...
GO GO:0012505 View Gene Set 1.447e-08 1454 2.842e-06 68 endomembrane system amigo.geneontol...
GO GO:0071212 View Gene Set 1.91e-08 723 3.697e-06 69 subsynaptic reticulum amigo.geneontol...
GO GO:0030054 View Gene Set 2.033e-08 539 3.854e-06 70 cell junction amigo.geneontol...
GO GO:0004888 View Gene Set 2.048e-08 1275 3.854e-06 70 transmembrane receptor activity amigo.geneontol...
GO GO:0005509 View Gene Set 2.309e-08 626 4.285e-06 72 calcium ion binding amigo.geneontol...
GO GO:0019725 View Gene Set 2.422e-08 500 4.432e-06 73 cellular homeostasis amigo.geneontol...
GO GO:0044432 View Gene Set 2.612e-08 689 4.715e-06 74 endoplasmic reticulum part amigo.geneontol...
GO GO:0035556 View Gene Set 2.782e-08 1205 4.955e-06 75 intracellular signal transduction amigo.geneontol...
GO GO:0006897 View Gene Set 3.19e-08 276 5.535e-06 76 endocytosis amigo.geneontol...
GO GO:0010324 View Gene Set 3.19e-08 276 5.535e-06 76 membrane invagination amigo.geneontol...
GO GO:0009888 View Gene Set 3.706e-08 827 6.348e-06 78 tissue development amigo.geneontol...
GO GO:0010646 View Gene Set 4.28e-08 1173 7.238e-06 79 regulation of cell communication amigo.geneontol...
GO GO:0044255 View Gene Set 5.098e-08 588 8.514e-06 80 cellular lipid metabolic process amigo.geneontol...
GO GO:0055082 View Gene Set 7.124e-08 411 1.175e-05 81 cellular chemical homeostasis amigo.geneontol...
GO GO:0009986 View Gene Set 8.056e-08 350 1.312e-05 82 cell surface amigo.geneontol...
GO GO:0050801 View Gene Set 8.722e-08 441 1.404e-05 83 ion homeostasis amigo.geneontol...
GO GO:0061024 View Gene Set 1.009e-07 446 1.605e-05 84 membrane organization amigo.geneontol...
GO GO:0006873 View Gene Set 1.173e-07 405 1.844e-05 85 cellular ion homeostasis amigo.geneontol...
GO GO:0009611 View Gene Set 1.398e-07 621 2.172e-05 86 response to wounding amigo.geneontol...
GO GO:0016044 View Gene Set 1.417e-07 445 2.176e-05 87 cellular membrane organization amigo.geneontol...
GO GO:0009719 View Gene Set 1.519e-07 513 2.307e-05 88 response to endogenous stimulus amigo.geneontol...
GO GO:0022804 View Gene Set 1.541e-07 343 2.313e-05 89 active transmembrane transporter activity amigo.geneontol...
GO GO:0044282 View Gene Set 1.692e-07 441 2.512e-05 90 small molecule catabolic process amigo.geneontol...
GO GO:0051049 View Gene Set 1.757e-07 525 2.579e-05 91 regulation of transport amigo.geneontol...
GO GO:0002376 View Gene Set 1.853e-07 1101 2.691e-05 92 immune system process amigo.geneontol...
GO GO:0019752 View Gene Set 2.151e-07 613 3.057e-05 93 carboxylic acid metabolic process amigo.geneontol...
GO GO:0043436 View Gene Set 2.151e-07 613 3.057e-05 93 oxoacid metabolic process amigo.geneontol...
GO GO:0005789 View Gene Set 2.188e-07 622 3.077e-05 95 endoplasmic reticulum membrane amigo.geneontol...
GO GO:0006163 View Gene Set 2.489e-07 446 3.464e-05 96 purine nucleotide metabolic process amigo.geneontol...
GO GO:0030030 View Gene Set 2.646e-07 458 3.644e-05 97 cell projection organization amigo.geneontol...
GO GO:0009205 View Gene Set 2.707e-07 253 3.69e-05 98 purine ribonucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0032787 View Gene Set 3.133e-07 356 4.228e-05 99 monocarboxylic acid metabolic process amigo.geneontol...
GO GO:0042625 View Gene Set 3.185e-07 69 4.255e-05 100 ATPase activity coupled to transmembrane movement of ions amigo.geneontol...
GO GO:0006082 View Gene Set 3.228e-07 620 4.27e-05 101 organic acid metabolic process amigo.geneontol...
GO GO:0006575 View Gene Set 3.382e-07 183 4.349e-05 102 cellular amino acid derivative metabolic process amigo.geneontol...
GO GO:0007186 View Gene Set 3.436e-07 543 4.349e-05 102 G-protein coupled receptor protein signaling pathway amigo.geneontol...
GO GO:0030029 View Gene Set 3.346e-07 301 4.349e-05 102 actin filament-based process amigo.geneontol...
GO GO:0000323 View Gene Set 3.451e-07 239 4.349e-05 102 lytic vacuole amigo.geneontol...
GO GO:0005764 View Gene Set 3.451e-07 239 4.349e-05 102 lysosome amigo.geneontol...
GO GO:0009605 View Gene Set 3.613e-07 666 4.511e-05 107 response to external stimulus amigo.geneontol...
GO GO:0030036 View Gene Set 4.206e-07 284 5.203e-05 108 actin cytoskeleton organization amigo.geneontol...
GO GO:0009141 View Gene Set 4.28e-07 267 5.246e-05 109 nucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0006066 View Gene Set 4.744e-07 471 5.762e-05 110 alcohol metabolic process amigo.geneontol...
GO GO:0043005 View Gene Set 4.836e-07 371 5.821e-05 111 neuron projection amigo.geneontol...
GO GO:0009144 View Gene Set 4.977e-07 258 5.937e-05 112 purine nucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0009199 View Gene Set 5.505e-07 254 6.509e-05 113 ribonucleoside triphosphate metabolic process amigo.geneontol...
GO GO:0044057 View Gene Set 6.768e-07 315 7.931e-05 114 regulation of system process amigo.geneontol...
GO GO:0015672 View Gene Set 8.407e-07 306 9.767e-05 115 monovalent inorganic cation transport amigo.geneontol...
GO GO:0048468 View Gene Set 9.014e-07 804 0.0001033 116 cell development amigo.geneontol...
GO GO:0042175 View Gene Set 9.044e-07 637 0.0001033 116 nuclear membrane-endoplasmic reticulum network amigo.geneontol...
GO GO:0009725 View Gene Set 9.398e-07 460 0.0001064 118 response to hormone stimulus amigo.geneontol...
GO GO:0006928 View Gene Set 9.521e-07 653 0.0001069 119 cellular component movement amigo.geneontol...
GO GO:0051239 View Gene Set 1.027e-06 1088 0.0001143 120 regulation of multicellular organismal process amigo.geneontol...
GO GO:0044444 View Gene Set 1.122e-06 5184 0.0001239 121 cytoplasmic part amigo.geneontol...
GO GO:0007167 View Gene Set 1.166e-06 475 0.0001277 122 enzyme linked receptor protein signaling pathway amigo.geneontol...
GO GO:0042180 View Gene Set 1.184e-06 627 0.0001286 123 cellular ketone metabolic process amigo.geneontol...
GO GO:0022890 View Gene Set 1.404e-06 215 0.0001512 124 inorganic cation transmembrane transporter activity amigo.geneontol...
GO GO:0030246 View Gene Set 1.428e-06 367 0.0001527 125 carbohydrate binding amigo.geneontol...
GO GO:0044421 View Gene Set 1.444e-06 1001 0.0001531 126 extracellular region part amigo.geneontol...
GO GO:0006631 View Gene Set 1.655e-06 245 0.0001735 127 fatty acid metabolic process amigo.geneontol...
GO GO:0019226 View Gene Set 1.662e-06 421 0.0001735 127 transmission of nerve impulse amigo.geneontol...
GO GO:0044437 View Gene Set 1.705e-06 138 0.0001766 129 vacuolar part amigo.geneontol...
GO GO:0031090 View Gene Set 1.735e-06 1905 0.0001783 130 organelle membrane amigo.geneontol...
GO GO:0009653 View Gene Set 1.916e-06 1301 0.0001954 131 anatomical structure morphogenesis amigo.geneontol...
GO GO:0008202 View Gene Set 2.263e-06 238 0.000229 132 steroid metabolic process amigo.geneontol...
GO GO:0006816 View Gene Set 2.458e-06 196 0.0002469 133 calcium ion transport amigo.geneontol...
GO GO:0070838 View Gene Set 2.956e-06 203 0.0002947 134 divalent metal ion transport amigo.geneontol...
GO GO:0044431 View Gene Set 3.152e-06 540 0.0003097 135 Golgi apparatus part amigo.geneontol...
GO GO:0019829 View Gene Set 3.14e-06 31 0.0003097 135 cation-transporting ATPase activity amigo.geneontol...
GO GO:0006793 View Gene Set 3.293e-06 1308 0.0003188 137 phosphorus metabolic process amigo.geneontol...
GO GO:0006796 View Gene Set 3.293e-06 1308 0.0003188 137 phosphate metabolic process amigo.geneontol...
GO GO:0005774 View Gene Set 3.502e-06 131 0.0003366 139 vacuolar membrane amigo.geneontol...
GO GO:0006754 View Gene Set 3.603e-06 90 0.0003438 140 ATP biosynthetic process amigo.geneontol...
GO GO:0055065 View Gene Set 3.628e-06 225 0.0003438 140 metal ion homeostasis amigo.geneontol...
GO GO:0009897 View Gene Set 4.657e-06 140 0.0004381 142 external side of plasma membrane amigo.geneontol...
GO GO:0043434 View Gene Set 4.76e-06 201 0.0004446 143 response to peptide hormone stimulus amigo.geneontol...
GO GO:0015629 View Gene Set 4.792e-06 281 0.0004446 143 actin cytoskeleton amigo.geneontol...
GO GO:0005792 View Gene Set 5.076e-06 244 0.0004677 145 microsome amigo.geneontol...
GO GO:0030136 View Gene Set 5.142e-06 147 0.0004706 146 clathrin-coated vesicle amigo.geneontol...
GO GO:0009150 View Gene Set 5.269e-06 275 0.0004789 147 purine ribonucleotide metabolic process amigo.geneontol...
GO GO:0050877 View Gene Set 5.408e-06 1272 0.0004882 148 neurological system process amigo.geneontol...
GO GO:0003013 View Gene Set 5.531e-06 250 0.0004894 149 circulatory system process amigo.geneontol...
GO GO:0007268 View Gene Set 5.513e-06 362 0.0004894 149 synaptic transmission amigo.geneontol...
GO GO:0008015 View Gene Set 5.531e-06 250 0.0004894 149 blood circulation amigo.geneontol...
GO GO:0006952 View Gene Set 5.765e-06 717 0.0005067 152 defense response amigo.geneontol...
GO GO:0003779 View Gene Set 5.804e-06 329 0.0005068 153 actin binding amigo.geneontol...
GO GO:0043025 View Gene Set 5.961e-06 182 0.0005138 154 neuronal cell body amigo.geneontol...
GO GO:0044297 View Gene Set 5.961e-06 182 0.0005138 154 cell body amigo.geneontol...
GO GO:0031175 View Gene Set 6.169e-06 322 0.0005283 156 neuron projection development amigo.geneontol...
GO GO:0044283 View Gene Set 7.394e-06 589 0.0006292 157 small molecule biosynthetic process amigo.geneontol...
GO GO:0046903 View Gene Set 7.579e-06 502 0.0006409 158 secretion amigo.geneontol...
GO GO:0009206 View Gene Set 8.476e-06 100 0.0007122 159 purine ribonucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0006954 View Gene Set 9.742e-06 380 0.0008135 160 inflammatory response amigo.geneontol...
GO GO:0006753 View Gene Set 1.054e-05 557 0.0008647 161 nucleoside phosphate metabolic process amigo.geneontol...
GO GO:0009117 View Gene Set 1.054e-05 557 0.0008647 161 nucleotide metabolic process amigo.geneontol...
GO GO:0055086 View Gene Set 1.055e-05 580 0.0008647 161 nucleobase nucleoside and nucleotide metabolic process amigo.geneontol...
GO GO:0015674 View Gene Set 1.077e-05 239 0.0008776 164 di- tri-valent inorganic cation transport amigo.geneontol...
GO GO:0006790 View Gene Set 1.143e-05 130 0.0009258 165 sulfur metabolic process amigo.geneontol...
GO GO:0009145 View Gene Set 1.181e-05 101 0.0009506 166 purine nucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0015662 View Gene Set 1.197e-05 53 0.0009578 167 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism amigo.geneontol...
GO GO:0046034 View Gene Set 1.227e-05 100 0.0009731 168 ATP metabolic process amigo.geneontol...
GO GO:0019717 View Gene Set 1.231e-05 94 0.0009731 168 synaptosome amigo.geneontol...
GO GO:0042598 View Gene Set 1.251e-05 251 0.0009835 170 vesicular fraction amigo.geneontol...
GO GO:0030135 View Gene Set 1.337e-05 179 0.001045 171 coated vesicle amigo.geneontol...
GO GO:0032868 View Gene Set 1.397e-05 137 0.001085 172 response to insulin stimulus amigo.geneontol...
GO GO:0030182 View Gene Set 1.405e-05 546 0.001085 173 neuron differentiation amigo.geneontol...
GO GO:0009142 View Gene Set 1.458e-05 103 0.001119 174 nucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0032989 View Gene Set 1.468e-05 423 0.00112 175 cellular component morphogenesis amigo.geneontol...
GO GO:0008092 View Gene Set 1.495e-05 512 0.001135 176 cytoskeletal protein binding amigo.geneontol...
GO GO:0005975 View Gene Set 1.511e-05 550 0.00114 177 carbohydrate metabolic process amigo.geneontol...
GO GO:0016126 View Gene Set 1.672e-05 42 0.001255 178 sterol biosynthetic process amigo.geneontol...
GO GO:0006955 View Gene Set 1.695e-05 732 0.001265 179 immune response amigo.geneontol...
GO GO:0000902 View Gene Set 1.71e-05 380 0.001269 180 cell morphogenesis amigo.geneontol...
GO GO:0016820 View Gene Set 1.753e-05 105 0.001294 181 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances amigo.geneontol...
GO GO:0055074 View Gene Set 1.882e-05 211 0.001381 182 calcium ion homeostasis amigo.geneontol...
GO GO:0023034 View Gene Set 1.96e-05 1522 0.001431 183 intracellular signaling pathway amigo.geneontol...
GO GO:0009201 View Gene Set 2.157e-05 101 0.001566 184 ribonucleoside triphosphate biosynthetic process amigo.geneontol...
GO GO:0015399 View Gene Set 2.191e-05 114 0.001574 185 primary active transmembrane transporter activity amigo.geneontol...
GO GO:0015405 View Gene Set 2.191e-05 114 0.001574 185 P-P-bond-hydrolysis-driven transmembrane transporter activity amigo.geneontol...
GO GO:0019199 View Gene Set 2.274e-05 82 0.001625 187 transmembrane receptor protein kinase activity amigo.geneontol...
GO GO:0032870 View Gene Set 2.322e-05 182 0.00165 188 cellular response to hormone stimulus amigo.geneontol...
GO GO:0043492 View Gene Set 2.367e-05 104 0.001673 189 ATPase activity coupled to movement of substances amigo.geneontol...
GO GO:0048812 View Gene Set 2.429e-05 247 0.001708 190 neuron projection morphogenesis amigo.geneontol...
GO GO:0006875 View Gene Set 2.573e-05 215 0.0018 191 cellular metal ion homeostasis amigo.geneontol...
GO GO:0003924 View Gene Set 2.605e-05 213 0.001813 192 GTPase activity amigo.geneontol...
GO GO:0016054 View Gene Set 2.761e-05 127 0.001892 193 organic acid catabolic process amigo.geneontol...
GO GO:0046395 View Gene Set 2.761e-05 127 0.001892 193 carboxylic acid catabolic process amigo.geneontol...
GO GO:0071495 View Gene Set 2.76e-05 190 0.001892 193 cellular response to endogenous stimulus amigo.geneontol...
GO GO:0040011 View Gene Set 2.829e-05 617 0.001909 196 locomotion amigo.geneontol...
GO GO:0048858 View Gene Set 2.808e-05 283 0.001909 196 cell projection morphogenesis amigo.geneontol...
GO GO:0016323 View Gene Set 2.821e-05 224 0.001909 196 basolateral plasma membrane amigo.geneontol...
GO GO:0044456 View Gene Set 2.97e-05 274 0.001993 199 synapse part amigo.geneontol...
GO GO:0042626 View Gene Set 2.983e-05 103 0.001993 199 ATPase activity coupled to transmembrane movement of substances amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr3q25 View Gene Set 0.0001712 61 0.02791 1 Genes in cytogenetic band chr3q25 www.broad.mit.e...
Broad chr8p22 View Gene Set 9.936e-05 37 0.02791 1 Genes in cytogenetic band chr8p22 www.broad.mit.e...
Broad chr6q23 View Gene Set 0.0002914 66 0.03167 3 Genes in cytogenetic band chr6q23 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 1.958e-52 399 4.683e-49 1 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 2.183e-44 268 2.611e-41 2 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_UP View Gene Set 1.824e-21 178 1.124e-18 3 Genes up-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 1.879e-21 1582 1.124e-18 3 Genes up-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5 View Gene Set 1.306e-18 446 6.25e-16 5 The 'group 5 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 but not ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad PEREZ_TP53_TARGETS View Gene Set 2.957e-17 1066 1.179e-14 6 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of TP53 [Gene ID=7157] off adenoviral vector. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 View Gene Set 9.098e-17 681 3.109e-14 7 The 'group 3 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad PEREZ_TP63_TARGETS View Gene Set 2.72e-16 328 8.134e-14 8 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vector. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 1.364e-15 944 3.625e-13 9 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad GOZGIT_ESR1_TARGETS_DN View Gene Set 8.156e-15 710 1.951e-12 10 Genes down-regulated in TMX2-28 cells (breast cancer) which do not express ESR1 [Gene ID=2099]) compared to the parental MCF7 cells which do. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN View Gene Set 5.308e-12 306 1.058e-09 11 Genes down-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2B View Gene Set 5.119e-12 384 1.058e-09 11 Genes specifically up-regulated in Cluster IIb of urothelial cell carcinom (UCC) tumors. www.broad.mit.e...
Broad NAGASHIMA_NRG1_SIGNALING_UP View Gene Set 9.89e-12 171 1.82e-09 13 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [Gene ID=3084]. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_UP View Gene Set 1.269e-11 249 2.168e-09 14 Genes up-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 1.872e-11 504 2.985e-09 15 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN View Gene Set 2.266e-11 361 3.189e-09 16 Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors. www.broad.mit.e...
Broad MASSARWEH_TAMOXIFEN_RESISTANCE_UP View Gene Set 2.16e-11 531 3.189e-09 16 Genes up-regulated in breast cancer tumors (formed by MCF-7 xenografts) resistant to tamoxifen [PubChem=5376]. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_UP View Gene Set 5.812e-11 99 7.724e-09 18 Genes up-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad PEREZ_TP53_AND_TP63_TARGETS View Gene Set 1.238e-10 187 1.525e-08 19 Genes up-regulated in HMEC cells (primary mammary epithelium) upon expression of both of TP53 [Gene ID=7157] and the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vectors. www.broad.mit.e...
Broad RIGGI_EWING_SARCOMA_PROGENITOR_UP View Gene Set 1.275e-10 399 1.525e-08 19 Genes up-regulated in mesenchymal stem cells (MSC) engineered to express EWS-FLI1 [Gene ID=2130 2321] fusion protein. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_UP View Gene Set 3.133e-10 413 3.568e-08 21 Genes up-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad UEDA_PERIFERAL_CLOCK View Gene Set 4.093e-10 146 4.45e-08 22 Molecular timetable composed of 162 time-indicating genes (182 probes) in the peripheral (liver) clock. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_DN View Gene Set 5.025e-10 664 5.226e-08 23 Genes down-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad BENPORATH_ES_WITH_H3K27ME3 View Gene Set 5.607e-10 1094 5.507e-08 24 Set 'H3K27 bound': genes posessing the trimethylated H3K27 (H3K27me3) mark in their promoters in human embryonic stem cells as identified by ChIP on chip. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 5.755e-10 453 5.507e-08 24 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_DN View Gene Set 1.501e-09 397 1.381e-07 26 Genes down-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad DOANE_RESPONSE_TO_ANDROGEN_UP View Gene Set 1.855e-09 175 1.506e-07 27 Genes up-regulated in MDA-MB-453 cells (class A ER(-) [Gene ID=2099] breast cancer) after exposure to the androgen R1881 [PubChem=13766]. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_UP View Gene Set 1.878e-09 157 1.506e-07 27 Genes up-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad DELYS_THYROID_CANCER_DN View Gene Set 1.705e-09 213 1.506e-07 27 Genes down-regulated in papillary thyroid carcinoma (PTC) compared to normal tissue. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 1.888e-09 402 1.506e-07 27 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 2.978e-09 353 2.298e-07 31 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 3.697e-09 471 2.68e-07 32 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_DN View Gene Set 3.628e-09 549 2.68e-07 32 Genes down-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_UP View Gene Set 5.379e-09 96 3.784e-07 34 Genes up-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 6.3e-09 532 4.305e-07 35 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad TAVOR_CEBPA_TARGETS_UP View Gene Set 1.141e-08 45 7.583e-07 36 Genes up-regulated in KCL22 cells (chronic myelogenous leukemia CML with BCR-ABL1 [GeneID=613 25] fusion) by expression of CEBPA [GeneID=1050]. www.broad.mit.e...
Broad DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP View Gene Set 2.343e-08 317 1.509e-06 37 Genes up-regulated in mARMS (molecular ARMS) compared to the mERMS (molecular ERMS) class of rhabdomyosarcoma tumors. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_DN View Gene Set 2.398e-08 334 1.509e-06 37 Genes whose expression negatively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad JAATINEN_HEMATOPOIETIC_STEM_CELL_DN View Gene Set 4.124e-08 215 2.529e-06 39 Genes up-regulated in CD133+ [Gene ID=8842] cells (hematopoietic stem cells HSC) compared to the CD133- cells. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 4.687e-08 783 2.803e-06 40 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 4.899e-08 509 2.858e-06 41 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN View Gene Set 5.024e-08 485 2.861e-06 42 Genes down-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad SUNG_METASTASIS_STROMA_UP View Gene Set 5.516e-08 106 3.069e-06 43 Genes up-regulated in metastatic vs non-metastatic stromal cells originated from either bone or prostate tissues. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_UP View Gene Set 5.979e-08 401 3.25e-06 44 Genes up-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_UP View Gene Set 6.471e-08 163 3.44e-06 45 Genes up-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 7.076e-08 517 3.68e-06 46 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad DANG_REGULATED_BY_MYC_DN View Gene Set 7.798e-08 242 3.969e-06 47 Genes down-regulated by MYC [Gene ID=4609] according to the MYC Target Gene Database. www.broad.mit.e...
Broad CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP View Gene Set 9.618e-08 228 4.793e-06 48 Genes up-regulated in SH-SY5Y cells (neuroblastoma) after treatment with epoxomicin [PubChem=3035402] a protease inhibitor causing apoptosis. www.broad.mit.e...
Broad CHIBA_RESPONSE_TO_TSA View Gene Set 1.29e-07 38 6.299e-06 49 Genes up-regulated in more than one of several human hepatoma cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad SATO_SILENCED_BY_METHYLATION_IN_PANCREATIC_CANCER_1 View Gene Set 1.428e-07 407 6.83e-06 50 Genes up-regulated in the pancreatic cancer cell lines (AsPC1 Hs766T MiaPaCa2 Panc1) but not in the non-neoplastic cells (HPDE) by decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP View Gene Set 1.551e-07 178 7.275e-06 51 Genes up-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad SMID_BREAST_CANCER_NORMAL_LIKE_UP View Gene Set 1.781e-07 459 8.194e-06 52 Genes up-regulated in the normal-like subtype of breast cancer. www.broad.mit.e...
Broad LENAOUR_DENDRITIC_CELL_MATURATION_UP View Gene Set 2.14e-07 92 9.66e-06 53 Genes up-regulated during in vitro maturation of CD14+ [Gene ID=929] monocytes (day 0) into immature (day 7) and mature dendritic cells (day 14). www.broad.mit.e...
Broad WINTER_HYPOXIA_METAGENE View Gene Set 2.346e-07 216 1.039e-05 54 Genes regulated by hypoxia based on literature searches. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_UP View Gene Set 2.395e-07 284 1.042e-05 55 Genes up-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_UP View Gene Set 2.555e-07 65 1.084e-05 56 Genes up-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad SATO_SILENCED_BY_DEACETYLATION_IN_PANCREATIC_CANCER View Gene Set 2.583e-07 48 1.084e-05 56 50 most interesting genes up-regulated in pancreatic cancer cell lines (AsPC1 Hs766T MiaPaCa2 Panc1) but not in the non-neoplastic cells (HPDE) by TSA [PubChem=5562]. www.broad.mit.e...
Broad SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP View Gene Set 2.63e-07 339 1.085e-05 58 Genes up-regulated in invasive ductal carcinoma (IDC) relative to ductal carcinoma in situ (DCIS non-invasive). www.broad.mit.e...
Broad KOBAYASHI_RESPONSE_TO_ROMIDEPSIN View Gene Set 2.93e-07 19 1.188e-05 59 Genes up-regulated in MM-LH cells (malignant melanoma) after treatment with the HDAC inhibitor romidepsin (FK228) [PubChem=5352062]. www.broad.mit.e...
Broad GERY_CEBP_TARGETS View Gene Set 3.346e-07 115 1.334e-05 60 Genes changed in NIH 3T3 cells (embryonic fibroblast) by expression of one or more of C/EBP proteins: CEBPA CEBPB CEBPG and CEBPD [Gene ID=1050 1051 1054 1052]. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_UP View Gene Set 3.582e-07 165 1.404e-05 61 Genes up-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_DN View Gene Set 3.796e-07 264 1.464e-05 62 Genes down-regulated in hepatoblastoma samples compared to normal liver tissue. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_DN View Gene Set 3.976e-07 230 1.502e-05 63 Genes down-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_UP View Gene Set 4.018e-07 394 1.502e-05 63 Genes up-regulated in peripheral blood mononucleocytes by HGF [Gene ID=3082] compared to those regulated by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad KIM_WT1_TARGETS_UP View Gene Set 5.32e-07 207 1.958e-05 65 Genes up-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S3 View Gene Set 6.503e-07 266 2.357e-05 66 Genes from 'subtype S3' signature of hepatocellular carcinoma (HCC): hepatocyte differentiation. www.broad.mit.e...
Broad LE_EGR2_TARGETS_DN View Gene Set 6.97e-07 100 2.488e-05 67 Genes down-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959]. www.broad.mit.e...
Broad BOYLAN_MULTIPLE_MYELOMA_C_D_DN View Gene Set 7.475e-07 232 2.63e-05 68 Genes down-regulated both in group C and D of tumors arising from overexpression of BCL2L1 and MYC [Gene ID=598 4609] in plasma cells. www.broad.mit.e...
Broad DELYS_THYROID_CANCER_UP View Gene Set 7.695e-07 397 2.668e-05 69 Genes up-regulated in papillary thyroid carcinoma (PTC) compared to normal tissue. www.broad.mit.e...
Broad ELVIDGE_HIF1A_AND_HIF2A_TARGETS_DN View Gene Set 8.097e-07 100 2.767e-05 70 Genes down-regulated in MCF7 cells (breast cancer) after knockdown of both HIF1A and HIF2A [Gene ID=3091 2034] by RNAi. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_DN View Gene Set 8.903e-07 235 2.864e-05 71 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_BY_DMOG_UP View Gene Set 8.934e-07 125 2.864e-05 71 Genes up-regulated in MCF7 cells (breast cancer) treated with hypoxia mimetic DMOG [PubChem=3080614]. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_DN View Gene Set 8.98e-07 205 2.864e-05 71 Genes down-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad UZONYI_RESPONSE_TO_LEUKOTRIENE_AND_THROMBIN View Gene Set 8.582e-07 37 2.864e-05 71 Genes up-regulated in HUVEC cells (primary endothelium) after stimulation with leukotriene LTD4 [PubChem=3908] or thrombin (F2) [Gene ID=2147] for 1 h. www.broad.mit.e...
Broad CHEN_LVAD_SUPPORT_OF_FAILING_HEART_UP View Gene Set 8.863e-07 100 2.864e-05 71 Up-regulated genesin the left ventricle myocardium of patients with heart failure following implantation of LVAD (left ventricular assist device). www.broad.mit.e...
Broad YAGI_AML_FAB_MARKERS View Gene Set 9.266e-07 189 2.916e-05 76 Genes specifically expressed in FAB subtypes M2 M4 M5 and M7 of pediatric AML (acute myeloid leukemia). www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 1.021e-06 583 3.173e-05 77 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_CTNNB1_DN View Gene Set 1.094e-06 144 3.355e-05 78 Top 200 marker genes down-regulated in the 'CTNNB1' subclass of hepatocellular carcinoma (HCC); characterized by activated CTNNB1 [Gene ID=1499]. www.broad.mit.e...
Broad WALLACE_PROSTATE_CANCER_RACE_UP View Gene Set 1.255e-06 288 3.801e-05 79 Genes up-regulated in prostate cancer samples from African-American patients compared to those from the European-American patients. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_0 View Gene Set 1.308e-06 69 3.912e-05 80 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 0. www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP View Gene Set 1.753e-06 365 5.176e-05 81 Genes distinguishing in multiple myeloma (MM) samples with higher expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP View Gene Set 2.011e-06 257 5.867e-05 82 Genes up-regulated in post-GC BCL6 [Gene ID=604] dependent B cell non-Hodgkin's lymphoma (B-NHL) vs MYC [Gene ID=4609] driven pre-GC lymphoma; GC = germinal center. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 2.037e-06 140 5.872e-05 83 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad DIRMEIER_LMP1_RESPONSE_EARLY View Gene Set 2.174e-06 54 6.191e-05 84 Clusters 1 and 2: genes up-regulated in B2264-19/3 cells (primary B lymphocytes) within 30-60 min after activation of LMP1 (an oncogene encoded by Epstein???Barr virus EBV). www.broad.mit.e...
Broad CHIBA_RESPONSE_TO_TSA_UP View Gene Set 2.293e-06 43 6.452e-05 85 Cancer related genes up-regulated in any of four hepatoma cell lines following 24 h treatment with TSA [PubChem=5562]. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_DN View Gene Set 2.429e-06 346 6.757e-05 86 Down-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad BROCKE_APOPTOSIS_REVERSED_BY_IL6 View Gene Set 2.48e-06 140 6.819e-05 87 Genes changed in INA-6 cells (multiple myeloma MM) by re-addition of IL6 [Gene ID=3569] after its initial withdrawal for 12h. www.broad.mit.e...
Broad PAPASPYRIDONOS_UNSTABLE_ATEROSCLEROTIC_PLAQUE_UP View Gene Set 2.564e-06 49 6.97e-05 88 Genes up-regulated in unstable ateroslerotic plaques compared to the stable ones. www.broad.mit.e...
Broad NAGASHIMA_EGF_SIGNALING_UP View Gene Set 2.65e-06 57 7.122e-05 89 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with EGF [Gene ID=1950]. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN View Gene Set 2.748e-06 431 7.224e-05 90 Genes down-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_DN View Gene Set 2.746e-06 301 7.224e-05 90 Genes down-regulated in peripheral blood monocytes by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_DN View Gene Set 2.782e-06 211 7.233e-05 92 Genes down-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN View Gene Set 2.898e-06 224 7.453e-05 93 Genes down-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_DN View Gene Set 3.294e-06 446 8.294e-05 94 Genes down-regulated in prostate cancer samples. www.broad.mit.e...
Broad BASSO_CD40_SIGNALING_UP View Gene Set 3.264e-06 100 8.294e-05 94 Gene changed by CD40 [Gene ID=958] signaling in Ramos cells (EBV negative Burkitt lymphoma). www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_UP View Gene Set 3.348e-06 95 8.343e-05 96 Genes commonly up-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_60_MCF10A View Gene Set 3.664e-06 56 8.982e-05 97 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad MCLACHLAN_DENTAL_CARIES_DN View Gene Set 3.68e-06 234 8.982e-05 97 Genes down-regulated in pulpal tissue extracted from carious teeth. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP View Gene Set 3.918e-06 224 9.335e-05 99 Genes up-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_DN View Gene Set 3.918e-06 224 9.335e-05 99 Genes down-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_UP View Gene Set 3.942e-06 409 9.335e-05 99 Genes up-regulated in peripheral blood monocytes by HGF [Gene ID=3082]. www.broad.mit.e...
Broad MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_DN View Gene Set 4.094e-06 64 9.601e-05 102 Down-regulated 'cooperation response genes': responded synergystically to the combination of mutant TP53 [Gene ID=7157] and HRAS [Gene ID=3265] in YAMC cells (colon). www.broad.mit.e...
Broad HESS_TARGETS_OF_HOXA9_AND_MEIS1_DN View Gene Set 4.849e-06 70 0.0001126 103 Genes down-regulated in hematopoietic precursor cells conditionally expressing HOXA9 and MEIS1 [Gene ID=3205 4211]. www.broad.mit.e...
Broad MASSARWEH_TAMOXIFEN_RESISTANCE_DN View Gene Set 4.902e-06 235 0.0001127 104 Genes down-regulated in breast cancer tumors (formed by MCF-7 xenografts) resistant to tamoxifen [PubChem=5376]. www.broad.mit.e...
Broad MANALO_HYPOXIA_UP View Gene Set 5.312e-06 197 0.000121 105 Genes up-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad BENPORATH_SUZ12_TARGETS View Gene Set 5.856e-06 1011 0.0001321 106 Set 'Suz12 targets': genes identified by ChIP on chip as targets of the Polycomb protein SUZ12 [Gene ID=23512] in human embryonic stem cells. www.broad.mit.e...
Broad DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_UP View Gene Set 6.552e-06 247 0.0001465 107 Genes up-regulated in RD cells (embryonal rhabdomyosarcoma ERMS) by expression of PAX3- or PAX7-FOXO1 [Gene ID=5077 5081 2308] fusions off retroviral vectors. www.broad.mit.e...
Broad FOSTER_INFLAMMATORY_RESPONSE_LPS_DN View Gene Set 7.089e-06 369 0.000157 108 Genes down-regulated by bacterial lipopolysaccharide (LPS) in non-tolerizeable (NT class) macrophages compared to the ???tolerizeable??? (T class) ones. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_UP View Gene Set 7.188e-06 155 0.0001577 109 Genes up-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad MCCLUNG_CREB1_TARGETS_UP View Gene Set 8.243e-06 89 0.0001793 110 Genes up-regulated in the nucleus accumbens (a major reward center in the brain) 8 weeks after induction of CREB1 [Gene ID=1385] expression in a transgenic Tet-Off system. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_DN View Gene Set 8.806e-06 158 0.0001864 111 Down-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad ONDER_CDH1_SIGNALING_VIA_CTNNB1 View Gene Set 8.794e-06 81 0.0001864 111 Genes changed in HMLE cells (mmortalized nontransformed mammary epithelium) after RNAi knockdown of both CDH1 [Gene ID=999] and CTNNB1 [Gene ID=1499] compared to the knockdown of CDH1 alone. www.broad.mit.e...
Broad RAGHAVACHARI_PLATELET_SPECIFIC_GENES View Gene Set 8.786e-06 68 0.0001864 111 Genes in this set correspond to the most abuntant transcripts that are also specific to platelets. www.broad.mit.e...
Broad GAJATE_RESPONSE_TO_TRABECTEDIN_UP View Gene Set 8.991e-06 53 0.0001886 114 Genes up-regulated in HeLa cells (cervical carcinoma) by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP View Gene Set 9.524e-06 539 0.0001981 115 Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad LEE_TARGETS_OF_PTCH1_AND_SUFU_UP View Gene Set 9.883e-06 77 0.0002038 116 Genes up-regulated in medulloblastoma tumors from animals with inactivating mutations of one copy of PTCH1 or SUFU [Gene ID=5727 51684] in conjunction with TP53 [Gene ID=7157] loss. www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_UP View Gene Set 1.001e-05 41 0.0002047 117 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage. www.broad.mit.e...
Broad JAEGER_METASTASIS_DN View Gene Set 1.025e-05 252 0.0002078 118 Genes down-regulated in metastases from malignant melanoma compared to the primary tumors. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_UP View Gene Set 1.309e-05 16 0.0002631 119 Genes up-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_UP View Gene Set 1.382e-05 175 0.0002755 120 Genes up-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad LU_AGING_BRAIN_DN View Gene Set 1.423e-05 255 0.0002812 121 Genes down-regulated in postmortem brain frontal cortex samples from old subjects compared to those from the young ones. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_UP View Gene Set 1.63e-05 208 0.0003169 122 Genes up-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK). www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_UP View Gene Set 1.618e-05 145 0.0003169 122 Genes up-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_CDC25_DN View Gene Set 1.65e-05 140 0.0003184 124 Genes down-regulated in reverted NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845] which then reverted to normal cells upon stable over-expression of a dominant negative form of CDC25 [Gene ID=5923]) vs normal fibroblasts. www.broad.mit.e...
Broad GARY_CD5_TARGETS_UP View Gene Set 1.729e-05 463 0.0003308 125 Genes up-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad LU_AGING_BRAIN_UP View Gene Set 1.801e-05 146 0.0003412 126 Genes up-regulated in postmortem brain frontal cortex samples from old subjects compared to those from the young ones. www.broad.mit.e...
Broad HENDRICKS_SMARCA4_TARGETS_UP View Gene Set 1.811e-05 49 0.0003412 126 Genes up-regulated in ALAB cells (breast cancer) upon reintroduction of SMARCA4 [Gene ID=6597] expressed off adenoviral vector. www.broad.mit.e...
Broad DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN View Gene Set 1.857e-05 303 0.000347 128 Genes down-regulated in T-PLL cells (T-cell prolymphocytic leukemia) bearing the inv(14)/t(14:14) chromosomal aberration. www.broad.mit.e...
Broad TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_8D_DN View Gene Set 2.002e-05 192 0.0003712 129 Genes down-regulated in CD34+ [Gene ID=947] hematopoetic cells by expression of NUP98-HOXA9 fusion [Gene ID=4928 3205] off a retroviral vector at 8 days after transduction. www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_HSC_UP View Gene Set 2.028e-05 182 0.0003732 130 Genes up-regulated in normal hematopoietic progenitors by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad STOSSI_RESPONSE_TO_ESTRADIOL View Gene Set 2.265e-05 37 0.0004136 131 Genes up-regulated by estradiol (E2) [PubChem=5757] in U2OS cells (osteosarcoma) expressing ESR1 or ESR2 [[Gene ID = 2099 2100]. www.broad.mit.e...
Broad SMITH_TERT_TARGETS_DN View Gene Set 2.326e-05 71 0.0004215 132 Genes consistently down-regulated in HMEC cells (primary mammary epithelium) upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_UP View Gene Set 2.52e-05 55 0.0004531 133 Common up-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP View Gene Set 2.714e-05 716 0.0004845 134 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad VERHAAK_AML_WITH_NPM1_MUTATED_DN View Gene Set 2.777e-05 241 0.000492 135 Genes down-regulated in acute myeloid leukemia (AML) patients with mutated NPM1 [Gene ID=4869]. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_UP View Gene Set 3.083e-05 162 0.0005397 136 Genes up-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad SENGUPTA_EBNA1_ANTICORRELATED View Gene Set 3.091e-05 156 0.0005397 136 Genes whose reduced expression in nasopharyngeal carinoma (NPC) correlated most with the increased expression of EBNA1 [Gene ID=3783774] a latent gene of Epstein-Barr virus (EBV). www.broad.mit.e...
Broad PICCALUGA_ANGIOIMMUNOBLASTIC_LYMPHOMA_DN View Gene Set 3.264e-05 123 0.0005658 138 Down-regulated genes in angioimmunoblastic lymphoma (AILT) compared to normal T lymphocytes. www.broad.mit.e...
Broad GESERICK_TERT_TARGETS_DN View Gene Set 3.3e-05 20 0.0005679 139 Genes down-regulated in MEF cells (embryonic fibroblasts) with TERT [Gene ID=7015] knockout after expression of the gene off a retroviral vector. www.broad.mit.e...
Broad LIU_CMYB_TARGETS_UP View Gene Set 3.331e-05 158 0.0005691 140 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN View Gene Set 3.4e-05 732 0.0005727 141 Genes down-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_UP View Gene Set 3.382e-05 131 0.0005727 141 Genes up-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_LATE_RECURRENCE_UP View Gene Set 3.483e-05 54 0.0005826 143 Genes whose expression correlated with higher risk of late recurrence of hepatocellular carcinoma (HCC). www.broad.mit.e...
Broad KIM_WT1_TARGETS_8HR_UP View Gene Set 3.587e-05 160 0.0005917 144 Genes up-regulated in UB27 cells (osteosarcoma) at 8 hr after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad KAAB_HEART_ATRIUM_VS_VENTRICLE_UP View Gene Set 3.586e-05 239 0.0005917 144 Genes up-regulated in the atria of healthy hearts compared to venticles. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 3.923e-05 296 0.0006428 146 Genes down-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad EBAUER_TARGETS_OF_PAX3_FOXO1_FUSION_UP View Gene Set 4.039e-05 201 0.0006548 147 Genes up-regulated in Rh4 cells (alveolar rhabdomyosarcoma ARMS) after knockdown of the PAX3-FOXO1 [Gene iD=5077 2308] fusion protein by RNAi for 72 hr. www.broad.mit.e...
Broad NELSON_RESPONSE_TO_ANDROGEN_UP View Gene Set 4.052e-05 81 0.0006548 147 Genes up-regulated in LNCaP cells (prostate cancer) in response to synthetic androgen R1881 [PubChem=13766]. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_DN View Gene Set 4.339e-05 516 0.0006966 149 Genes down-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN View Gene Set 4.721e-05 153 0.0007512 150 Genes down-regulated in medullary breast cancer (MBC) relative to ductal breast cancer (DBD). www.broad.mit.e...
Broad DITTMER_PTHLH_TARGETS_DN View Gene Set 4.774e-05 72 0.0007512 150 Genes down-regulated in MDA-MB-231 cells (breast cancer) after knockdown of PTHLH [Gene ID=5744] by RNAi. www.broad.mit.e...
Broad KHETCHOUMIAN_TRIM24_TARGETS_UP View Gene Set 4.755e-05 45 0.0007512 150 Retinoic acid-responsive genes up-regulated in hepatocellular carcinoma (HCC) samples of TRIM24 [Gene ID=8805] knockout mice. www.broad.mit.e...
Broad LEE_DOUBLE_POLAR_THYMOCYTE View Gene Set 4.831e-05 17 0.0007552 153 Genes enriched in the double polar (DP) thymocyte compared to all other T lymphocyte differentiation stages. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP View Gene Set 5.127e-05 86 0.0007964 154 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad VALK_AML_CLUSTER_7 View Gene Set 5.209e-05 26 0.0008039 155 Top 40 genes from cluster 7 of acute myeloid leukemia (AML) expression profile; 61% of the samples are FAB M1 or M2 subtype. www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_3_4WK_UP View Gene Set 5.26e-05 187 0.0008066 156 Genes up-regulated during pubertal mammary gland development between weeks 3 and 4. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN View Gene Set 5.566e-05 135 0.0008455 157 Genes whose expression profile is specific to Cluster IIa of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_ESTRADIOL_UP View Gene Set 5.585e-05 32 0.0008455 157 Genes up-regulated in MCF-7 cells (breast cancer) by estradiol (E2) [PubChem=5757]. www.broad.mit.e...
Broad VALK_AML_CLUSTER_8 View Gene Set 5.683e-05 23 0.0008549 159 Top 40 genes from cluster 8 of aculte myeloid leukemia (AML) expression profile; 69% of the samples are FAB M2 subtype. www.broad.mit.e...
Broad MCLACHLAN_DENTAL_CARIES_UP View Gene Set 5.758e-05 207 0.0008608 160 Genes up-regulated in pulpal tissue extracted from carious teeth. www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN View Gene Set 5.841e-05 133 0.0008677 161 Genes down-regulated in transformed NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845]) vs normal cells. www.broad.mit.e...
Broad THUM_SYSTOLIC_HEART_FAILURE_UP View Gene Set 6.009e-05 393 0.0008873 162 Genes up-regulated in samples with systolic heart failure compared to normal hearts. www.broad.mit.e...
Broad KERLEY_RESPONSE_TO_CISPLATIN_UP View Gene Set 6.302e-05 38 0.0009247 163 Genes genes up-regulated in NT2/D1 cells (embryonal carcinoma) in response to treatment with cisplatin [PubChem=2767]. www.broad.mit.e...
Broad CAIRO_LIVER_DEVELOPMENT_DN View Gene Set 6.341e-05 208 0.0009249 164 Genes down-regulated at early fetal liver stage (embryonic days E11.5 - E12.5) compared to the late fetal liver stage (embryonic days E14.5 - E16.5). www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_UP View Gene Set 6.387e-05 70 0.0009259 165 Genes up-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI (TNFRSF13B) [Gene ID=23495]. www.broad.mit.e...
Broad ZHAN_V1_LATE_DIFFERENTIATION_GENES_UP View Gene Set 6.908e-05 31 0.0009953 166 The v1LDG set: most variable late differentiation genes (LDG) with similar expression patterns in tonsil plasma cells (TPC) and multiple myeloma (MM) samples. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_DN View Gene Set 7.002e-05 87 0.001003 167 Genes down-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad LEE_DIFFERENTIATING_T_LYMPHOCYTE View Gene Set 7.215e-05 129 0.001023 168 Genes enriched at every T lymphocyte differentiation stage compared to the early passage fetal thymic stromal cultures (TSC). www.broad.mit.e...
Broad ZHANG_TARGETS_OF_EWSR1_FLI1_FUSION View Gene Set 7.227e-05 84 0.001023 168 Genes up-regulated in RD-EF cells (rhabdomyosarcoma) engineered to express EWSR1-FLI1 fusion [Gene ID=2130 2313] and which are also highly expressed in Ewing's famliy tumors. www.broad.mit.e...
Broad LEE_NEURAL_CREST_STEM_CELL_DN View Gene Set 7.679e-05 114 0.00108 170 Genes down-regulated in the neural crest stem cells (NCS) defined as p75+/HNK1+ [Gene ID=4804 27087]. www.broad.mit.e...
Broad ZHOU_INFLAMMATORY_RESPONSE_LIVE_UP View Gene Set 8.241e-05 458 0.001153 171 Genes up-regulated in macrophage by live P.gingivalis. www.broad.mit.e...
Broad PARK_TRETINOIN_RESPONSE_AND_RARA_PLZF_FUSION View Gene Set 8.389e-05 18 0.001167 172 Genes up-regulated by tretinoin (all-trans retinoic acid ATRA) [PubChem=5538] in U937 cells (acute promyelocytic leukemia APL) made resistant to the drug by expression of the PLZF-RARA fusion [Gene ID = 7704 5914]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 9.175e-05 437 0.001269 173 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad SMID_BREAST_CANCER_ERBB2_UP View Gene Set 0.0001041 138 0.001431 174 Genes up-regulated in the erbb2 subype of breast cancer samples characterized by higher expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_UP View Gene Set 0.000107 158 0.001463 175 Genes up-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad RODRIGUES_DCC_TARGETS_DN View Gene Set 0.0001133 121 0.001539 176 Genes down-regulated in HCT8/S1 cells (colon cancer) which normally lack DCC [Gene ID=9423] compared to those stably expressing wild type DCC off a plasmid vector. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_APOCRINE VS LUMINAL View Gene Set 0.0001163 312 0.001571 177 Genes which best discriminate between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: apocrine (ESR1- AR+) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 0.0001254 422 0.001674 178 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad GAUSSMANN_MLL_AF4_FUSION_TARGETS_E_UP View Gene Set 0.0001258 75 0.001674 178 Up-regulated genes from the set E (Fig. 5a): specific signature shared by cells expressing either MLL-AF4 [Gene ID=4297 4299] or AF4-MLL fusion proteins alone and those expressing both fusion proteins. www.broad.mit.e...
Broad CHUNG_BLISTER_CYTOTOXICITY_DN View Gene Set 0.0001259 40 0.001674 178 Genes changed in blister cells from patients with adverse drug reactions (ADR). www.broad.mit.e...
Broad HAN_SATB1_TARGETS_DN View Gene Set 0.0001341 320 0.001773 181 Genes down-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad BEGUM_TARGETS_OF_PAX3_FOXO1_FUSION_UP View Gene Set 0.0001377 50 0.001809 182 Genes up-regulated in SaOS-2 cells (osteosarcoma) upon expression of PAX3-FOXO1 [Gene ID=5077 2308] fusion protein off an adenoviral vector. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 0.0001421 182 0.001857 183 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad SASSON_RESPONSE_TO_GONADOTROPHINS_DN View Gene Set 0.0001467 72 0.001907 184 Genes down-regulated in primary granulosa cells after stimulation with LH or FSH gonadotrophic hormones for 24 h. www.broad.mit.e...
Broad ROSS_AML_WITH_PML_RARA_FUSION View Gene Set 0.0001572 74 0.002032 185 Top 100 probe sets for pediatric acute myeloid leukemia (AML) subtype t(15;17): has PML RARA fusion [Gene ID=5371 5914]. www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G24 View Gene Set 0.0001601 18 0.002059 186 Cluster G24: genes induced in NHEK (normal keratinocyte) but not in SCC12B2 cells (squamous cell carcinoma) by UV-B radiation. www.broad.mit.e...
Broad KIM_MYCN_AMPLIFICATION_TARGETS_DN View Gene Set 0.000178 78 0.002265 187 Genes negatively correlated with amplifications of MYCN [Gene ID=4613] in the SCLC (small cell lung cancer) cell lines. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SURVIVAL_DN View Gene Set 0.0001781 112 0.002265 187 Survival signature genes defined in adjacent liver tissue: genes correlated with good survival of hepatocellular carcinoma (HCC) patients. www.broad.mit.e...
Broad BEGUM_TARGETS_OF_PAX3_FOXO1_FUSION_DN View Gene Set 0.0001809 36 0.002278 189 Genes down-regulated in SaOS-2 cells (osteosarcoma) upon expression of PAX3-FOXO1 [Gene ID=5077 2308] fusion protein off an adenoviral vector. www.broad.mit.e...
Broad MAHAJAN_RESPONSE_TO_IL1A_UP View Gene Set 0.0001803 67 0.002278 189 Genes up-regulated in corneal fibroblasts after treatment with IL1A [Gene ID=3552]. www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_4_5WK_UP View Gene Set 0.0001838 243 0.002289 191 Genes up-regulated during pubertal mammary gland development between week 4 and 5. www.broad.mit.e...
Broad VART_KSHV_INFECTION_ANGIOGENIC_MARKERS_UP View Gene Set 0.0001828 163 0.002289 191 Angiogenic markers up-regulated in lymph endothelial cells upon infection with KSHV (Kaposi's sarcoma herpes virus). www.broad.mit.e...
Broad PARK_TRETINOIN_RESPONSE View Gene Set 0.0001865 10 0.002311 193 Genes up-regulated in U937 cells (acute promyelocytic leukemia APL) by tretinoin (all-trans retinoic acid ATRA) [PubChem=5538]. www.broad.mit.e...
Broad DAVICIONI_RHABDOMYOSARCOMA_PAX_FOXO1_FUSION_UP View Gene Set 0.0001949 62 0.002402 194 Genes up-regulated in RMS cells (rhabdomyosarcoma) expressing PAX3 or PAX7 fusions with FOXO1 [Gene ID=5077 5081 2308] compared to the fusion negative cell lines. www.broad.mit.e...
Broad PAPASPYRIDONOS_UNSTABLE_ATEROSCLEROTIC_PLAQUE_DN View Gene Set 0.0001968 42 0.002402 194 Genes down-regulated in unstable ateroslerotic plaques compared to the stable ones. www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_UP View Gene Set 0.0001959 78 0.002402 194 Genes up-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and down-regulated by RNAi knockdown of TFRC [Gene ID=7037]. www.broad.mit.e...
Broad CREIGHTON_AKT1_SIGNALING_VIA_MTOR_UP View Gene Set 0.0002093 34 0.002541 197 Genes in the AKT1 [Gene ID=207] pathway which are independent of MTOR [Gene ID=2475] insensitive to RAD001 (everolimus) [PubChem=6442177]. www.broad.mit.e...
Broad SABATES_COLORECTAL_ADENOMA_DN View Gene Set 0.0002185 276 0.002639 198 Genes down-regulated in colorectal adenoma compared to normal mucosa samples. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_UP View Gene Set 0.0002201 64 0.002646 199 Genes up-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad DAUER_STAT3_TARGETS_UP View Gene Set 0.000227 39 0.002715 200 Top 50 genes up-regulated in A549 cells (lung cancer) expressing STAT3 [Gene ID=6774] off an adenovirus vector. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_BIOPEPTIDES_PATHWAY View Gene Set 0.0001242 43 0.02695 1 Bioactive Peptide Induced Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_CCR5_PATHWAY View Gene Set 0.0003341 18 0.03625 2 Pertussis toxin-insensitive CCR5 Signaling in Macrophage www.broad.mit.e...
Broad BIOCARTA_HDAC_PATHWAY View Gene Set 0.0008432 30 0.04574 3 Control of skeletal myogenesis by HDAC and calcium/calmodulin-dependent kinase (CaMK) www.broad.mit.e...
Broad BIOCARTA_EPHA4_PATHWAY View Gene Set 0.0006994 10 0.04574 3 Eph Kinases and ephrins support platelet aggregation www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_LYSOSOME View Gene Set 6.003e-07 122 4.922e-05 1 Lysosome www.broad.mit.e...
Broad KEGG_AXON_GUIDANCE View Gene Set 6.324e-07 129 4.922e-05 1 Axon guidance www.broad.mit.e...
Broad KEGG_VIBRIO_CHOLERAE_INFECTION View Gene Set 7.938e-07 56 4.922e-05 1 Vibrio cholerae infection www.broad.mit.e...
Broad KEGG_STEROID_BIOSYNTHESIS View Gene Set 4.068e-06 17 0.0001892 4 Steroid biosynthesis www.broad.mit.e...
Broad KEGG_ENDOCYTOSIS View Gene Set 6.232e-06 183 0.0002318 5 Endocytosis www.broad.mit.e...
Broad KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM View Gene Set 9.874e-06 76 0.0003061 6 Phosphatidylinositol signaling system www.broad.mit.e...
Broad KEGG_CELL_ADHESION_MOLECULES_CAMS View Gene Set 1.34e-05 134 0.0003561 7 Cell adhesion molecules (CAMs) www.broad.mit.e...
Broad KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY View Gene Set 3.038e-05 137 0.0006279 8 Natural killer cell mediated cytotoxicity www.broad.mit.e...
Broad KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION View Gene Set 2.796e-05 118 0.0006279 8 Leukocyte transendothelial migration www.broad.mit.e...
Broad KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION View Gene Set 6.527e-05 89 0.001214 10 Antigen processing and presentation www.broad.mit.e...
Broad KEGG_ARGININE_AND_PROLINE_METABOLISM View Gene Set 9.848e-05 54 0.001665 11 Arginine and proline metabolism www.broad.mit.e...
Broad KEGG_ALDOSTERONE_REGULATED_SODIUM_REABSORPTION View Gene Set 0.0001512 42 0.002343 12 Aldosterone-regulated sodium reabsorption www.broad.mit.e...
Broad KEGG_INSULIN_SIGNALING_PATHWAY View Gene Set 0.000231 137 0.003305 13 Insulin signaling pathway www.broad.mit.e...
Broad KEGG_CHEMOKINE_SIGNALING_PATHWAY View Gene Set 0.0003434 190 0.004563 14 Chemokine signaling pathway www.broad.mit.e...
Broad KEGG_MAPK_SIGNALING_PATHWAY View Gene Set 0.0003968 267 0.00492 15 MAPK signaling pathway www.broad.mit.e...
Broad KEGG_INOSITOL_PHOSPHATE_METABOLISM View Gene Set 0.0004611 54 0.005361 16 Inositol phosphate metabolism www.broad.mit.e...
Broad KEGG_FC_EPSILON_RI_SIGNALING_PATHWAY View Gene Set 0.0005404 79 0.005913 17 Fc epsilon RI signaling pathway www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION View Gene Set 0.0007075 44 0.006732 18 Valine leucine and isoleucine degradation www.broad.mit.e...
Broad KEGG_ADHERENS_JUNCTION View Gene Set 0.0007239 75 0.006732 18 Adherens junction www.broad.mit.e...
Broad KEGG_TIGHT_JUNCTION View Gene Set 0.0006691 134 0.006732 18 Tight junction www.broad.mit.e...
Broad KEGG_FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS View Gene Set 0.0008338 97 0.007385 21 Fc gamma R-mediated phagocytosis www.broad.mit.e...
Broad KEGG_FATTY_ACID_METABOLISM View Gene Set 0.001424 42 0.01204 22 Fatty acid metabolism www.broad.mit.e...
Broad KEGG_PROXIMAL_TUBULE_BICARBONATE_RECLAMATION View Gene Set 0.001982 23 0.01603 23 Proximal tubule bicarbonate reclamation www.broad.mit.e...
Broad KEGG_T_CELL_RECEPTOR_SIGNALING_PATHWAY View Gene Set 0.002212 109 0.01711 24 T cell receptor signaling pathway www.broad.mit.e...
Broad KEGG_ACUTE_MYELOID_LEUKEMIA View Gene Set 0.002299 60 0.01711 24 Acute myeloid leukemia www.broad.mit.e...
Broad KEGG_GNRH_SIGNALING_PATHWAY View Gene Set 0.002804 101 0.02006 26 GnRH signaling pathway www.broad.mit.e...
Broad KEGG_SPHINGOLIPID_METABOLISM View Gene Set 0.003267 40 0.0217 27 Sphingolipid metabolism www.broad.mit.e...
Broad KEGG_FOCAL_ADHESION View Gene Set 0.003209 201 0.0217 27 Focal adhesion www.broad.mit.e...
Broad KEGG_TYPE_II_DIABETES_MELLITUS View Gene Set 0.004035 47 0.02588 29 Type II diabetes mellitus www.broad.mit.e...
Broad KEGG_NEUROTROPHIN_SIGNALING_PATHWAY View Gene Set 0.004775 126 0.02776 30 Neurotrophin signaling pathway www.broad.mit.e...
Broad KEGG_GRAFT_VERSUS_HOST_DISEASE View Gene Set 0.004765 42 0.02776 30 Graft-versus-host disease www.broad.mit.e...
Broad KEGG_ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC View Gene Set 0.004608 76 0.02776 30 Arrhythmogenic right ventricular cardiomyopathy (ARVC) www.broad.mit.e...
Broad KEGG_GLYCEROPHOSPHOLIPID_METABOLISM View Gene Set 0.005279 76 0.02976 33 Glycerophospholipid metabolism www.broad.mit.e...
Broad KEGG_PPAR_SIGNALING_PATHWAY View Gene Set 0.005489 69 0.03003 34 PPAR signaling pathway www.broad.mit.e...
Broad KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION View Gene Set 0.005791 68 0.03078 35 Epithelial cell signaling in Helicobacter pylori infection www.broad.mit.e...
Broad KEGG_REGULATION_OF_ACTIN_CYTOSKELETON View Gene Set 0.006187 216 0.03132 36 Regulation of actin cytoskeleton www.broad.mit.e...
Broad KEGG_TYPE_I_DIABETES_MELLITUS View Gene Set 0.00623 44 0.03132 36 Type I diabetes mellitus www.broad.mit.e...
Broad KEGG_CALCIUM_SIGNALING_PATHWAY View Gene Set 0.007112 178 0.03481 38 Calcium signaling pathway www.broad.mit.e...
Broad KEGG_ERBB_SIGNALING_PATHWAY View Gene Set 0.008175 87 0.03801 39 ErbB signaling pathway www.broad.mit.e...
Broad KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION View Gene Set 0.008116 272 0.03801 39 Neuroactive ligand-receptor interaction www.broad.mit.e...
Broad KEGG_NITROGEN_METABOLISM View Gene Set 0.008762 23 0.03824 41 Nitrogen metabolism www.broad.mit.e...
Broad KEGG_BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS View Gene Set 0.008824 22 0.03824 41 Biosynthesis of unsaturated fatty acids www.broad.mit.e...
Broad KEGG_HEMATOPOIETIC_CELL_LINEAGE View Gene Set 0.008841 88 0.03824 41 Hematopoietic cell lineage www.broad.mit.e...
Broad KEGG_MELANOGENESIS View Gene Set 0.009134 102 0.03861 44 Melanogenesis www.broad.mit.e...
Broad KEGG_PEROXISOME View Gene Set 0.009418 78 0.03893 45 Peroxisome www.broad.mit.e...
Broad KEGG_SELENOAMINO_ACID_METABOLISM View Gene Set 0.009685 26 0.03916 46 Selenoamino acid metabolism www.broad.mit.e...
Broad KEGG_VEGF_SIGNALING_PATHWAY View Gene Set 0.01263 76 0.04999 47 VEGF signaling pathway www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CHOLESTEROL_BIOSYNTHESIS View Gene Set 6.346e-07 21 0.0002012 1 Genes involved in Cholesterol biosynthesis www.broad.mit.e...
Broad REACTOME_HEMOSTASIS View Gene Set 1.404e-06 274 0.0002012 1 Genes involved in Hemostasis www.broad.mit.e...
Broad REACTOME_SIGNALING_IN_IMMUNE_SYSTEM View Gene Set 9.882e-07 366 0.0002012 1 Genes involved in Signaling in Immune system www.broad.mit.e...
Broad REACTOME_FORMATION_OF_PLATELET_PLUG View Gene Set 2.896e-05 186 0.003113 4 Genes involved in Formation of Platelet plug www.broad.mit.e...
Broad REACTOME_SLC_MEDIATED_TRANSMEMBRANE_TRANSPORT View Gene Set 3.719e-05 169 0.003198 5 Genes involved in SLC-mediated transmembrane transport www.broad.mit.e...
Broad REACTOME_DOWNSTREAM_EVENTS_IN_GPCR_SIGNALING View Gene Set 8.414e-05 448 0.004088 6 Genes involved in Downstream events in GPCR signaling www.broad.mit.e...
Broad REACTOME_IMMUNOREGULATORY_INTERACTIONS_BETWEEN_A_LYMPHOID_AND_A_NON_LYMPHOID_CELL View Gene Set 8.556e-05 106 0.004088 6 Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell www.broad.mit.e...
Broad REACTOME_TRANSFORMATION_OF_LANOSTEROL_TO_CHOLESTEROL View Gene Set 8.355e-05 10 0.004088 6 Genes involved in Transformation of lanosterol to cholesterol www.broad.mit.e...
Broad REACTOME_TRANSMISSION_ACROSS_CHEMICAL_SYNAPSES View Gene Set 6.029e-05 130 0.004088 6 Genes involved in Transmission across Chemical Synapses www.broad.mit.e...
Broad REACTOME_NEUROTRANSMITTER_RELEASE_CYCLE View Gene Set 0.0001814 28 0.007176 10 Genes involved in Neurotransmitter Release Cycle www.broad.mit.e...
Broad REACTOME_PLATELET_ACTIVATION View Gene Set 0.0001836 167 0.007176 10 Genes involved in Platelet Activation www.broad.mit.e...
Broad REACTOME_CELL_JUNCTION_ORGANIZATION View Gene Set 0.0002063 84 0.007392 12 Genes involved in Cell junction organization www.broad.mit.e...
Broad REACTOME_STEROID_METABOLISM View Gene Set 0.0002329 62 0.007704 13 Genes involved in Steroid metabolism www.broad.mit.e...
Broad REACTOME_AXON_GUIDANCE View Gene Set 0.0003244 160 0.009965 14 Genes involved in Axon guidance www.broad.mit.e...
Broad REACTOME_GLUTAMATE_NEUROTRANSMITTER_RELEASE_CYCLE View Gene Set 0.0005719 15 0.01537 15 Genes involved in Glutamate Neurotransmitter Release Cycle www.broad.mit.e...
Broad REACTOME_INORGANIC_CATION_ANION_SLC_TRANSPORTERS View Gene Set 0.0005369 94 0.01537 15 Genes involved in Inorganic cation/anion SLC transporters www.broad.mit.e...
Broad REACTOME_CELL_SURFACE_INTERACTIONS_AT_THE_VASCULAR_WALL View Gene Set 0.0008474 94 0.0187 17 Genes involved in Cell surface interactions at the vascular wall www.broad.mit.e...
Broad REACTOME_BOTULINUM_NEUROTOXICITY View Gene Set 0.0007657 18 0.0187 17 Genes involved in Botulinum neurotoxicity www.broad.mit.e...
Broad REACTOME_CREB_PHOPHORYLATION_THROUGH_THE_ACTIVATION_OF_RAS View Gene Set 0.0008696 26 0.0187 17 Genes involved in CREB phophorylation through the activation of Ras www.broad.mit.e...
Broad REACTOME_POST_NMDA_RECEPTOR_ACTIVATION_EVENTS View Gene Set 0.0008552 32 0.0187 17 Genes involved in Post NMDA receptor activation events www.broad.mit.e...
Broad REACTOME_SEMAPHORIN_INTERACTIONS View Gene Set 0.0009942 66 0.02036 21 Genes involved in Semaphorin interactions www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_NMDA_RECEPTOR_UPON_GLUTAMATE_BINDING_AND_POSTSYNAPTIC_EVENTS View Gene Set 0.001323 36 0.02586 22 Genes involved in Activation of NMDA receptor upon glutamate binding and postsynaptic events www.broad.mit.e...
Broad REACTOME_FURTHER_PLATELET_RELEASATE View Gene Set 0.001456 24 0.02609 23 Genes involved in Further platelet releasate www.broad.mit.e...
Broad REACTOME_TRANSMEMBRANE_TRANSPORT_OF_SMALL_MOLECULES View Gene Set 0.00145 218 0.02609 23 Genes involved in Transmembrane transport of small molecules www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_LIPIDS_AND_LIPOPROTEINS View Gene Set 0.002004 228 0.03293 25 Genes involved in Metabolism of lipids and lipoproteins www.broad.mit.e...
Broad REACTOME_TRKA_SIGNALLING_FROM_THE_PLASMA_MEMBRANE View Gene Set 0.002068 103 0.03293 25 Genes involved in TRKA signalling from the plasma membrane www.broad.mit.e...
Broad REACTOME_GAP_JUNCTION_DEGRADATION View Gene Set 0.002012 10 0.03293 25 Genes involved in Gap junction degradation www.broad.mit.e...
Broad REACTOME_NOREPINEPHRINE_NEUROTRANSMITTER_RELEASE_CYCLE View Gene Set 0.002241 12 0.03441 28 Genes involved in Norepinephrine Neurotransmitter Release Cycle www.broad.mit.e...
Broad REACTOME_SIGNALLING_BY_NGF View Gene Set 0.002417 216 0.03584 29 Genes involved in Signalling by NGF www.broad.mit.e...
Broad REACTOME_PROTEOLYTIC_CLEAVAGE_OF_SNARE_COMPLEX_PROTEINS View Gene Set 0.00259 16 0.03713 30 Genes involved in Proteolytic cleavage of SNARE complex proteins www.broad.mit.e...
Broad REACTOME_COLLAGEN_MEDIATED_ACTIVATION_CASCADE View Gene Set 0.003212 23 0.04455 31 Genes involved in Collagen-mediated activation cascade www.broad.mit.e...
Broad REACTOME_BRANCHED_CHAIN_AMINO_ACID_CATABOLISM View Gene Set 0.004092 17 0.0463 32 Genes involved in Branched-chain amino acid catabolism www.broad.mit.e...
Broad REACTOME_CLASS_A1_RHODOPSIN_LIKE_RECEPTORS View Gene Set 0.003721 292 0.0463 32 Genes involved in Class A/1 (Rhodopsin-like receptors) www.broad.mit.e...
Broad REACTOME_PHASE_1_FUNCTIONALIZATION View Gene Set 0.004025 15 0.0463 32 Genes involved in Phase 1 functionalization www.broad.mit.e...
Broad REACTOME_PLATELET_ACTIVATION_TRIGGERS View Gene Set 0.00398 59 0.0463 32 Genes involved in Platelet activation triggers www.broad.mit.e...
Broad REACTOME_REGULATION_OF_INSULIN_SECRETION_BY_GLUCAGON_LIKE_PEPTIDE_1 View Gene Set 0.003672 61 0.0463 32 Genes involved in Regulation of Insulin Secretion by Glucagon-like Peptide-1 www.broad.mit.e...
Broad REACTOME_GPCR_LIGAND_BINDING View Gene Set 0.003846 392 0.0463 32 Genes involved in GPCR ligand binding www.broad.mit.e...
Broad REACTOME_MAPK_TARGETS_NUCLEAR_EVENTS_MEDIATED_BY_MAP_KINASES View Gene Set 0.00363 30 0.0463 32 Genes involved in MAPK targets/Nuclear events mediated by MAP kinases www.broad.mit.e...
Broad REACTOME_CELLEXTRACELLULAR_MATRIX_INTERACTIONS View Gene Set 0.00425 16 0.0468 39 Genes involved in Cell-extracellular matrix interactions www.broad.mit.e...
Broad REACTOME_MAP_KINASES_ACTIVATION_IN_TLR_CASCADE View Gene Set 0.004353 44 0.0468 39 Genes involved in MAP kinases activation in TLR cascade www.broad.mit.e...
Broad REACTOME_PLC_GAMMA1_SIGNALLING View Gene Set 0.004682 35 0.0491 41 Genes involved in PLC-gamma1 signalling www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GTGCCTT MIR-506 View Gene Set 4.383e-07 605 9.687e-05 1 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad CTATGCA MIR-153 View Gene Set 1.766e-05 182 0.001301 2 Targets of MicroRNA CTATGCA MIR-153 www.broad.mit.e... MIR-153...
Broad TTGCCAA MIR-182 View Gene Set 1.225e-05 274 0.001301 2 Targets of MicroRNA TTGCCAA MIR-182 www.broad.mit.e... MIR-182...
Broad GACAATC MIR-219 View Gene Set 2.743e-05 124 0.001515 4 Targets of MicroRNA GACAATC MIR-219 www.broad.mit.e... MIR-219...
Broad TGGTGCT MIR-29A MIR-29B MIR-29C View Gene Set 0.0001182 436 0.003265 5 Targets of MicroRNA TGGTGCT MIR-29A MIR-29B MIR-29C www.broad.mit.e... MIR-29A... MIR-29B... MIR-29C...
Broad CAGTATT MIR-200B MIR-200C MIR-429 View Gene Set 0.0001153 386 0.003265 5 Targets of MicroRNA CAGTATT MIR-200B MIR-200C MIR-429 www.broad.mit.e... MIR-200B... MIR-200C... MIR-429...
Broad AGGGCAG MIR-18A View Gene Set 9.177e-05 116 0.003265 5 Targets of MicroRNA AGGGCAG MIR-18A www.broad.mit.e... MIR-18A...
Broad AAGCACA MIR-218 View Gene Set 8.875e-05 336 0.003265 5 Targets of MicroRNA AAGCACA MIR-218 www.broad.mit.e... MIR-218...
Broad AAGCCAT MIR-135A MIR-135B View Gene Set 0.0001579 283 0.003878 9 Targets of MicroRNA AAGCCAT MIR-135A MIR-135B www.broad.mit.e... MIR-135A... MIR-135B...
Broad GCTTGAA MIR-498 View Gene Set 0.0001762 96 0.003893 10 Targets of MicroRNA GCTTGAA MIR-498 www.broad.mit.e... MIR-498...
Broad CTGAGCC MIR-24 View Gene Set 0.0004925 195 0.009895 11 Targets of MicroRNA CTGAGCC MIR-24 www.broad.mit.e... MIR-24...
Broad ATGCTGC MIR-103 MIR-107 View Gene Set 0.0005851 185 0.009947 12 Targets of MicroRNA ATGCTGC MIR-103 MIR-107 www.broad.mit.e... MIR-103... MIR-107...
Broad TGCCTTA MIR-124A View Gene Set 0.0005762 471 0.009947 12 Targets of MicroRNA TGCCTTA MIR-124A www.broad.mit.e... MIR-124A...
Broad GCACTTT MIR-17-5P MIR-20A MIR-106A MIR-106B MIR-20B MIR-519D View Gene Set 0.000662 506 0.01045 14 Targets of MicroRNA GCACTTT MIR-17-5P MIR-20A MIR-106A MIR-106B MIR-20B MIR-519D www.broad.mit.e... MIR-17-5P... MIR-20A... MIR-106A... MIR-106B... MIR-20B... MIR-519D...
Broad ACCAAAG MIR-9 View Gene Set 0.0009022 428 0.01329 15 Targets of MicroRNA ACCAAAG MIR-9 www.broad.mit.e... MIR-9...
Broad TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D View Gene Set 0.001341 418 0.01743 16 Targets of MicroRNA TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D www.broad.mit.e... MIR-181A... MIR-181B... MIR-181C... MIR-181D...
Broad CTTTGCA MIR-527 View Gene Set 0.001316 198 0.01743 16 Targets of MicroRNA CTTTGCA MIR-527 www.broad.mit.e... MIR-527...
Broad ACTGTGA MIR-27A MIR-27B View Gene Set 0.001511 385 0.01855 18 Targets of MicroRNA ACTGTGA MIR-27A MIR-27B www.broad.mit.e... MIR-27A... MIR-27B...
Broad AATGTGA MIR-23A MIR-23B View Gene Set 0.001898 356 0.02207 19 Targets of MicroRNA AATGTGA MIR-23A MIR-23B www.broad.mit.e... MIR-23A... MIR-23B...
Broad GTGCCAA MIR-96 View Gene Set 0.002264 265 0.02502 20 Targets of MicroRNA GTGCCAA MIR-96 www.broad.mit.e... MIR-96...
Broad GCTCTTG MIR-335 View Gene Set 0.00248 70 0.0261 21 Targets of MicroRNA GCTCTTG MIR-335 www.broad.mit.e... MIR-335...
Broad CTCAGGG MIR-125B MIR-125A View Gene Set 0.002896 277 0.02855 22 Targets of MicroRNA CTCAGGG MIR-125B MIR-125A www.broad.mit.e... MIR-125B... MIR-125A...
Broad CTACTGT MIR-199A View Gene Set 0.002971 146 0.02855 22 Targets of MicroRNA CTACTGT MIR-199A www.broad.mit.e... MIR-199A...
Broad AGCATTA MIR-155 View Gene Set 0.003637 118 0.03349 24 Targets of MicroRNA AGCATTA MIR-155 www.broad.mit.e... MIR-155...
Broad CACTGTG MIR-128A MIR-128B View Gene Set 0.003956 276 0.03497 25 Targets of MicroRNA CACTGTG MIR-128A MIR-128B www.broad.mit.e... MIR-128A... MIR-128B...
Broad TGCACTG MIR-148A MIR-152 MIR-148B View Gene Set 0.00544 252 0.04294 26 Targets of MicroRNA TGCACTG MIR-148A MIR-152 MIR-148B www.broad.mit.e... MIR-148A... MIR-152... MIR-148B...
Broad GGCAGTG MIR-324-3P View Gene Set 0.005292 82 0.04294 26 Targets of MicroRNA GGCAGTG MIR-324-3P www.broad.mit.e... MIR-324-3P...
Broad AACTGAC MIR-223 View Gene Set 0.005149 84 0.04294 26 Targets of MicroRNA AACTGAC MIR-223 www.broad.mit.e... MIR-223...
Broad CAGCACT MIR-512-3P View Gene Set 0.005859 134 0.04465 29 Targets of MicroRNA CAGCACT MIR-512-3P www.broad.mit.e... MIR-512-3P...
Broad ATACCTC MIR-202 View Gene Set 0.006694 150 0.04932 30 Targets of MicroRNA ATACCTC MIR-202 www.broad.mit.e... MIR-202...
Broad CAGCCTC MIR-485-5P View Gene Set 0.006929 117 0.0494 31 Targets of MicroRNA CAGCCTC MIR-485-5P www.broad.mit.e... MIR-485-5P...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CAGGTG_V$E12_Q6 View Gene Set 4.322e-22 1818 2.658e-19 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGGTG which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad GCANCTGNY_V$MYOD_Q6 View Gene Set 1.453e-11 673 4.466e-09 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCANCTGNY which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad CAGCTG_V$AP4_Q5 View Gene Set 7.588e-11 1129 1.555e-08 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGCTG which matches annotation for REPIN1: replication initiator 1 www.broad.mit.e...
Broad CTGCAGY_UNKNOWN View Gene Set 1.605e-10 570 2.468e-08 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTGCAGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGACAGNY_V$MEIS1_01 View Gene Set 2.385e-09 603 2.933e-07 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACAGNY which matches annotation for MEIS1: Meis1 myeloid ecotropic viral integration site 1 homolog (mouse) www.broad.mit.e...
Broad AACTTT_UNKNOWN View Gene Set 3.381e-09 1437 3.465e-07 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AACTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGGAAA_V$NFAT_Q4_01 View Gene Set 6.023e-09 1403 5.291e-07 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGGAAA which matches annotation for NFAT<br> NFATC www.broad.mit.e...
Broad TTGTTT_V$FOXO4_01 View Gene Set 1.336e-07 1507 1.027e-05 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGTTT which matches annotation for MLLT7: myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog Drosophila); translocated to 7 www.broad.mit.e...
Broad TGACATY_UNKNOWN View Gene Set 3.651e-07 503 2.245e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGACATY. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGCCAAR_V$NF1_Q6 View Gene Set 3.295e-07 532 2.245e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGCCAAR which matches annotation for NF1: neurofibromin 1 (neurofibromatosis von Recklinghausen disease Watson disease) www.broad.mit.e...
Broad V$E2A_Q2 View Gene Set 1.091e-06 179 6.1e-05 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCACCTGYYNCNKN which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad V$E47_01 View Gene Set 2.454e-06 201 0.0001258 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VSNGCAGGTGKNCNN which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad CTTTAAR_UNKNOWN View Gene Set 2.837e-06 739 0.0001342 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTTTAAR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$GATA_C View Gene Set 3.881e-06 204 0.0001705 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGATAAGNMNN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1) www.broad.mit.e...
Broad GGGYGTGNY_UNKNOWN View Gene Set 5.526e-06 487 0.000219 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGGYGTGNY. Motif does not match any known transcription factor www.broad.mit.e...
Broad GTGGGTGK_UNKNOWN View Gene Set 5.697e-06 224 0.000219 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GTGGGTGK. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NF1_Q6 View Gene Set 7.279e-06 206 0.0002487 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNTTGGCNNNNNNCCNNN which matches annotation for NF1: neurofibromin 1 (neurofibromatosis von Recklinghausen disease Watson disease) www.broad.mit.e...
Broad RTAAACA_V$FREAC2_01 View Gene Set 7.147e-06 697 0.0002487 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RTAAACA which matches annotation for FOXF2: forkhead box F2 www.broad.mit.e...
Broad CTTTGT_V$LEF1_Q2 View Gene Set 8.768e-06 1458 0.0002838 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGT which matches annotation for LEF1: lymphoid enhancer-binding factor 1 www.broad.mit.e...
Broad RNGTGGGC_UNKNOWN View Gene Set 1.304e-05 557 0.0004011 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RNGTGGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad TTAYRTAA_V$E4BP4_01 View Gene Set 1.679e-05 189 0.0004916 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTAYRTAA which matches annotation for NFIL3: nuclear factor interleukin 3 regulated www.broad.mit.e...
Broad V$GATA_Q6 View Gene Set 1.954e-05 159 0.0005462 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGATARN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1) www.broad.mit.e...
Broad TTANTCA_UNKNOWN View Gene Set 2.179e-05 702 0.0005828 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTANTCA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$TEF1_Q6 View Gene Set 2.902e-05 167 0.0007138 24 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GRRATG. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGATTA_V$PITX2_Q2 View Gene Set 2.871e-05 456 0.0007138 24 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGATTA which matches annotation for PITX2: paired-like homeodomain transcription factor 2 www.broad.mit.e...
Broad V$CREBP1_01 View Gene Set 3.316e-05 123 0.0007328 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTACGTAA which matches annotation for ATF2: activating transcription factor 2 www.broad.mit.e...
Broad V$E12_Q6 View Gene Set 3.301e-05 191 0.0007328 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RRCAGGTGNCV which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad TGGNNNNNNKCCAR_UNKNOWN View Gene Set 3.455e-05 314 0.0007328 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGGNNNNNNKCCAR. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGGTGGRR_V$PAX4_03 View Gene Set 3.372e-05 994 0.0007328 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGTGGRR which matches annotation for PAX4: paired box gene 4 www.broad.mit.e...
Broad GATAAGR_V$GATA_C View Gene Set 4.778e-05 232 0.0009795 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATAAGR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NF1_Q6_01 View Gene Set 5.166e-05 202 0.001025 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGGNNNNNNGCCAANN which matches annotation for NF1: neurofibromin 1 (neurofibromatosis von Recklinghausen disease Watson disease) www.broad.mit.e...
Broad YTATTTTNR_V$MEF2_02 View Gene Set 6.156e-05 528 0.001183 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif YTATTTTNR which matches annotation for MEF2A: MADS box transcription enhancer factor 2 polypeptide A (myocyte enhancer factor 2A) www.broad.mit.e...
Broad V$NKX62_Q2 View Gene Set 6.748e-05 187 0.001233 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NWADTAAWTANN which matches annotation for NKX6-2: NK6 transcription factor related locus 2 (Drosophila) www.broad.mit.e...
Broad V$RP58_01 View Gene Set 6.815e-05 179 0.001233 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNAACATCTGGA which matches annotation for ZNF238: zinc finger protein 238 www.broad.mit.e...
Broad V$AP4_01 View Gene Set 7.061e-05 190 0.001241 35 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGARYCAGCTGYGGNCNK which matches annotation for TFAP4: transcription factor AP-4 (activating enhancer binding protein 4) www.broad.mit.e...
Broad V$MYOD_Q6_01 View Gene Set 7.936e-05 182 0.001356 36 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CNGNRNCAGGTGNNGNAN which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad YNGTTNNNATT_UNKNOWN View Gene Set 0.0001209 265 0.001968 37 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YNGTTNNNATT. Motif does not match any known transcription factor www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01 View Gene Set 0.0001216 830 0.001968 37 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SP1_Q2_01 View Gene Set 0.0001356 185 0.002138 39 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCCCGCCCCN which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$RORA1_01 View Gene Set 0.0001429 189 0.002197 40 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NWAWNNAGGTCAN which matches annotation for RORA: RAR-related orphan receptor A www.broad.mit.e...
Broad V$MYOGENIN_Q6 View Gene Set 0.0001507 187 0.002261 41 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RGCAGSTG which matches annotation for MYOG: myogenin (myogenic factor 4) www.broad.mit.e...
Broad V$SRF_C View Gene Set 0.0001754 174 0.002568 42 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif DCCWTATATGGNCWN which matches annotation for SRF: serum response factor (c-fos serum response element-binding transcription factor) www.broad.mit.e...
Broad V$BRN2_01 View Gene Set 0.000194 188 0.002741 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCATNSRWAATNMRN which matches annotation for POU3F2: POU domain class 3 transcription factor 2 www.broad.mit.e...
Broad WGGAATGY_V$TEF1_Q6 View Gene Set 0.0001961 281 0.002741 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGGAATGY which matches annotation for TEAD1: TEA domain family member 1 (SV40 transcriptional enhancer factor) www.broad.mit.e...
Broad V$TGIF_01 View Gene Set 0.0002519 171 0.003443 45 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AGCTGTCANNA which matches annotation for TGIF: TGFB-induced factor (TALE family homeobox) www.broad.mit.e...
Broad V$AREB6_03 View Gene Set 0.0002723 178 0.003641 46 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VNRCACCTGKNC which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression) www.broad.mit.e...
Broad V$LMO2COM_02 View Gene Set 0.00028 194 0.003647 47 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NMGATANSG which matches annotation for LMO2: LIM domain only 2 (rhombotin-like 1) www.broad.mit.e...
Broad TGANTCA_V$AP1_C View Gene Set 0.0002846 850 0.003647 47 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGANTCA which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$MEF2_03 View Gene Set 0.0002942 184 0.003693 49 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNNNWKCTAWAAATAGMNNNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad YATGNWAAT_V$OCT_C View Gene Set 0.0003028 289 0.003725 50 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YATGNWAAT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYOD_Q6 View Gene Set 0.0003442 187 0.004151 51 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCACCTGNY which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$ISRE_01 View Gene Set 0.0003605 171 0.004264 52 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGTTTCWCTTTYCC which matches annotation for STAT1: signal transducer and activator of transcription 1 91kDa<br> STAT2: signal transducer and activator of transcription 2 113kDa www.broad.mit.e...
Broad V$CREB_Q2 View Gene Set 0.0003772 192 0.004332 53 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NSTGACGTAANN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$MAF_Q6 View Gene Set 0.0003804 202 0.004332 53 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TRGRRGGAAGTKKSST which matches annotation for MAF: v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) www.broad.mit.e...
Broad V$FOXO4_02 View Gene Set 0.0004795 190 0.005362 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGTTGTTTACNTN which matches annotation for MLLT7: myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog Drosophila); translocated to 7 www.broad.mit.e...
Broad V$MEIS1_01 View Gene Set 0.0004907 173 0.005389 56 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTGACAGNNN which matches annotation for MEIS1: Meis1 myeloid ecotropic viral integration site 1 homolog (mouse) www.broad.mit.e...
Broad V$SRF_Q5_01 View Gene Set 0.0005437 189 0.005866 57 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCAWATAWGGMNMNG which matches annotation for SRF: serum response factor (c-fos serum response element-binding transcription factor) www.broad.mit.e...
Broad V$E4BP4_01 View Gene Set 0.0005629 159 0.005868 58 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NRTTAYGTAAYN which matches annotation for NFIL3: nuclear factor interleukin 3 regulated www.broad.mit.e...
Broad V$CEBP_Q2_01 View Gene Set 0.0005571 207 0.005868 58 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTRCNNAANNN which matches annotation for CEBPA: CCAAT/enhancer binding protein (C/EBP) alpha www.broad.mit.e...
Broad V$HEN1_02 View Gene Set 0.0007275 141 0.007457 60 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGGGNCGCAGCTGCGNCCCNN which matches annotation for NHLH1: nescient helix loop helix 1 www.broad.mit.e...
Broad TGAYRTCA_V$ATF3_Q6 View Gene Set 0.0007571 405 0.007633 61 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAYRTCA which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$CP2_02 View Gene Set 0.000829 178 0.008223 62 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCTGGNTNGNNCYNG which matches annotation for TFCP2: transcription factor CP2 www.broad.mit.e...
Broad CTAWWWATA_V$RSRFC4_Q2 View Gene Set 0.0009223 283 0.009003 63 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTAWWWATA which matches annotation for MEF2A: MADS box transcription enhancer factor 2 polypeptide A (myocyte enhancer factor 2A) www.broad.mit.e...
Broad V$SF1_Q6 View Gene Set 0.0009594 187 0.009077 64 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGRCCTTG which matches annotation for SF1: splicing factor 1 www.broad.mit.e...
Broad GGGAGGRR_V$MAZ_Q6 View Gene Set 0.0009449 1701 0.009077 64 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAGGRR which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor) www.broad.mit.e...
Broad ACAWYAAAG_UNKNOWN View Gene Set 0.0009939 81 0.009123 66 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWYAAAG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ATF1_Q6 View Gene Set 0.0009851 186 0.009123 66 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CYYTGACGTCA which matches annotation for ATF1: activating transcription factor 1 www.broad.mit.e...
Broad V$OCT_C View Gene Set 0.001088 206 0.00984 68 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTNATTTGCATAY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AP1_C View Gene Set 0.001162 222 0.01035 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGASTCAG which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$HNF4_Q6 View Gene Set 0.001218 195 0.0107 70 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AARGTCCAN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha www.broad.mit.e...
Broad V$AP4_Q6 View Gene Set 0.00126 170 0.01077 71 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CWCAGCTGGN which matches annotation for TFAP4: transcription factor AP-4 (activating enhancer binding protein 4) www.broad.mit.e...
Broad YGTCCTTGR_UNKNOWN View Gene Set 0.001261 76 0.01077 71 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGTCCTTGR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AREB6_02 View Gene Set 0.00146 189 0.0123 73 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WNWCACCTGWNN which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression) www.broad.mit.e...
Broad TGTTTGY_V$HNF3_Q6 View Gene Set 0.001539 560 0.01279 74 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGTTTGY which matches annotation for FOXA1: forkhead box A1 www.broad.mit.e...
Broad V$SP1_Q6_01 View Gene Set 0.00159 163 0.01304 75 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGGCGGGGC which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$FREAC2_01 View Gene Set 0.001643 196 0.01329 76 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANNGTAAACAANNN which matches annotation for FOXF2: forkhead box F2 www.broad.mit.e...
Broad CTGYNNCTYTAA_UNKNOWN View Gene Set 0.001741 60 0.01391 77 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTGYNNCTYTAA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$EVI1_03 View Gene Set 0.002007 44 0.01571 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AGATAAGATAA which matches annotation for EVI1: ecotropic viral integration site 1 www.broad.mit.e...
Broad V$AR_01 View Gene Set 0.002069 106 0.01571 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGTACANNRTGTTCT which matches annotation for AR: androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) www.broad.mit.e...
Broad V$AR_02 View Gene Set 0.002048 29 0.01571 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGNRRGNACANNGTGTTCTNNNNNN which matches annotation for AR: androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) www.broad.mit.e...
Broad TTCYRGAA_UNKNOWN View Gene Set 0.002049 221 0.01571 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTCYRGAA. Motif does not match any known transcription factor www.broad.mit.e...
Broad CYTAGCAAY_UNKNOWN View Gene Set 0.002124 105 0.01584 82 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CYTAGCAAY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$HFH4_01 View Gene Set 0.002138 162 0.01584 82 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AWKTGTTTGTTTA which matches annotation for FOXJ1: forkhead box J1 www.broad.mit.e...
Broad V$ATF3_Q6 View Gene Set 0.002204 193 0.01614 84 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CBCTGACGTCANCS which matches annotation for ATF3: activating transcription factor 3 www.broad.mit.e...
Broad V$GATA1_04 View Gene Set 0.002332 191 0.01688 85 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCWGATARNNNN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1) www.broad.mit.e...
Broad V$SREBP_Q3 View Gene Set 0.002395 185 0.01712 86 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif VNNVTCACCCYA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CREB_Q4 View Gene Set 0.002541 188 0.01796 87 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NSTGACGTMANN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$EVI1_01 View Gene Set 0.002609 12 0.01803 88 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGAYAAGATAAGATAA which matches annotation for EVI1: ecotropic viral integration site 1 www.broad.mit.e...
Broad V$OCT1_06 View Gene Set 0.00258 213 0.01803 88 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CWNAWTKWSATRYN which matches annotation for POU2F1: POU domain class 2 transcription factor 1 www.broad.mit.e...
Broad V$OCT_Q6 View Gene Set 0.002664 206 0.0182 90 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TNATTTGCATN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SP1_Q6 View Gene Set 0.002752 177 0.0186 91 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGGGGGCGGGGYN which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$AML_Q6 View Gene Set 0.002858 196 0.0191 92 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGKNTGTGGTTWNC which matches annotation for RUNX1: runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) www.broad.mit.e...
Broad V$GATA6_01 View Gene Set 0.003127 191 0.02068 93 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGATWANN which matches annotation for GATA6: GATA binding protein 6 www.broad.mit.e...
Broad V$HNF6_Q6 View Gene Set 0.003417 182 0.02235 94 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif HWAAATCAATAW which matches annotation for ONECUT1: one cut domain family member 1 www.broad.mit.e...
Broad CTTTGA_V$LEF1_Q2 View Gene Set 0.003505 902 0.02269 95 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGA which matches annotation for LEF1: lymphoid enhancer-binding factor 1 www.broad.mit.e...
Broad V$FOXO3_01 View Gene Set 0.003579 177 0.02293 96 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TNNTTGTTTACNTW which matches annotation for FOXO3A: forkhead box O3A www.broad.mit.e...
Broad V$MEF2_Q6_01 View Gene Set 0.003623 191 0.02297 97 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RGCTATWTTTAR. Motif does not match any known transcription factor www.broad.mit.e...
Broad RYAAAKNNNNNNTTGW_UNKNOWN View Gene Set 0.003684 71 0.02312 98 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RYAAAKNNNNNNTTGW. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6 View Gene Set 0.003755 2120 0.02333 99 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$CEBP_C View Gene Set 0.00391 153 0.02405 100 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGWVTKNKGYAAKNSAYA which matches annotation for CEBPA: CCAAT/enhancer binding protein (C/EBP) alpha www.broad.mit.e...
Broad V$SOX5_01 View Gene Set 0.004047 194 0.02428 101 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNAACAATNN which matches annotation for SOX5: SRY (sex determining region Y)-box 5 www.broad.mit.e...
Broad V$EN1_01 View Gene Set 0.004028 84 0.02428 101 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GTANTNN which matches annotation for EN1: engrailed homolog 1 www.broad.mit.e...
Broad V$FOXO4_01 View Gene Set 0.004067 184 0.02428 101 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RWAAACAANNN which matches annotation for MLLT7: myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog Drosophila); translocated to 7 www.broad.mit.e...
Broad V$NFY_01 View Gene Set 0.004227 178 0.025 104 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNRRCCAATSRGNNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SP1_Q4_01 View Gene Set 0.004389 181 0.02571 105 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGGGGCGGGGNN which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$AP4_Q5 View Gene Set 0.004476 206 0.02597 106 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VDCAGCTGNN which matches annotation for TFAP4: transcription factor AP-4 (activating enhancer binding protein 4) www.broad.mit.e...
Broad V$CEBPB_01 View Gene Set 0.004535 198 0.02607 107 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RNRTKDNGMAAKNN which matches annotation for CEBPB: CCAAT/enhancer binding protein (C/EBP) beta www.broad.mit.e...
Broad V$CEBPA_01 View Gene Set 0.004626 189 0.02634 108 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNATTRCNNAANNN which matches annotation for CEBPA: CCAAT/enhancer binding protein (C/EBP) alpha www.broad.mit.e...
Broad V$PAX_Q6 View Gene Set 0.005128 202 0.02893 109 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTGGAACTMAC which matches annotation for PAX2: paired box gene 2 www.broad.mit.e...
Broad V$FOX_Q2 View Gene Set 0.005387 169 0.03012 110 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif KATTGTTTRTTTW which matches annotation for FOXF2: forkhead box F2 www.broad.mit.e...
Broad RYTTCCTG_V$ETS2_B View Gene Set 0.005543 809 0.03071 111 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RYTTCCTG which matches annotation for ETS2: v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) www.broad.mit.e...
Broad GTTNYYNNGGTNA_UNKNOWN View Gene Set 0.005733 56 0.03148 112 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GTTNYYNNGGTNA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$HEN1_01 View Gene Set 0.005812 154 0.03158 113 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGGNCNCAGCTGCGNCCCNN which matches annotation for NHLH1: nescient helix loop helix 1 www.broad.mit.e...
Broad V$RORA2_01 View Gene Set 0.00588 116 0.03158 113 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NWAWNTAGGTCAN which matches annotation for RORA: RAR-related orphan receptor A www.broad.mit.e...
Broad V$RFX1_01 View Gene Set 0.005905 179 0.03158 113 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGTNRCNWRGYAACNN which matches annotation for RFX1: regulatory factor X 1 (influences HLA class II expression) www.broad.mit.e...
Broad V$P300_01 View Gene Set 0.006129 182 0.03219 116 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGGGAGTNNNNS which matches annotation for PCAF: p300/CBP-associated factor www.broad.mit.e...
Broad V$EVI1_02 View Gene Set 0.006177 95 0.03219 116 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AGAYAAGATAA which matches annotation for EVI1: ecotropic viral integration site 1 www.broad.mit.e...
Broad V$SOX9_B1 View Gene Set 0.006084 183 0.03219 116 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNAACAATRGNN which matches annotation for SOX9: SRY (sex determining region Y)-box 9 (campomelic dysplasia autosomal sex-reversal) www.broad.mit.e...
Broad WTTGKCTG_UNKNOWN View Gene Set 0.006317 387 0.03265 119 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif WTTGKCTG. Motif does not match any known transcription factor www.broad.mit.e...
Broad CAGGTA_V$AREB6_01 View Gene Set 0.006399 575 0.03279 120 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGGTA which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression) www.broad.mit.e...
Broad V$FREAC4_01 View Gene Set 0.006479 111 0.03293 121 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTWAWGTAAACANWGN which matches annotation for FOXD1: forkhead box D1 www.broad.mit.e...
Broad V$CREBP1_Q2 View Gene Set 0.006766 185 0.03411 122 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VGTGACGTMACN which matches annotation for ATF2: activating transcription factor 2 www.broad.mit.e...
Broad TGANNYRGCA_V$TCF11MAFG_01 View Gene Set 0.006948 218 0.03474 123 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGANNYRGCA which matches annotation for NFE2L1: nuclear factor (erythroid-derived 2)-like 1<br> MAFG: v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) www.broad.mit.e...
Broad V$OCT1_Q6 View Gene Set 0.007036 202 0.0349 124 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNATGCAAATNAN which matches annotation for POU2F1: POU domain class 2 transcription factor 1 www.broad.mit.e...
Broad V$MYOD_01 View Gene Set 0.007249 187 0.03507 125 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SRACAGGTGKYG which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$FXR_Q3 View Gene Set 0.007325 82 0.03507 125 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CARGKTSAWTRACC which matches annotation for NR1H4: nuclear receptor subfamily 1 group H member 4 www.broad.mit.e...
Broad V$CACBINDINGPROTEIN_Q6 View Gene Set 0.007185 175 0.03507 125 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GRGGSTGGG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$LXR_DR4_Q3 View Gene Set 0.007212 64 0.03507 125 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACCGNNAGTRACCC which matches annotation for NR1H3: nuclear receptor subfamily 1 group H member 3 www.broad.mit.e...
Broad V$OCT1_Q5_01 View Gene Set 0.007355 209 0.03507 125 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TNATTTGCATW which matches annotation for POU2F1: POU domain class 2 transcription factor 1 www.broad.mit.e...
Broad V$OCT1_05 View Gene Set 0.007434 201 0.03517 130 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MKVATTTGCATATT which matches annotation for POU2F1: POU domain class 2 transcription factor 1 www.broad.mit.e...
Broad V$CEBP_Q2 View Gene Set 0.0076 173 0.0355 131 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNATTGCNNAANNN which matches annotation for CEBPA: CCAAT/enhancer binding protein (C/EBP) alpha www.broad.mit.e...
Broad GTTRYCATRR_UNKNOWN View Gene Set 0.00762 123 0.0355 131 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GTTRYCATRR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$TAL1BETAITF2_01 View Gene Set 0.008193 191 0.03789 133 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNAACAGATGKTNNN which matches annotation for TAL1: T-cell acute lymphocytic leukemia 1<br> TCF4: transcription factor 4 www.broad.mit.e...
Broad CCTNTMAGA_UNKNOWN View Gene Set 0.008322 94 0.03819 134 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CCTNTMAGA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$IK1_01 View Gene Set 0.008573 207 0.03906 135 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NHNTGGGAATRCC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SRF_Q6 View Gene Set 0.008893 209 0.04021 136 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GNCCAWATAWGGMN which matches annotation for SRF: serum response factor (c-fos serum response element-binding transcription factor) www.broad.mit.e...
Broad YGCANTGCR_UNKNOWN View Gene Set 0.009088 93 0.0408 137 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCANTGCR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AP2_Q6_01 View Gene Set 0.009327 181 0.04157 138 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SNNNCCNCAGGCN which matches annotation for GTF3A: general transcription factor IIIA www.broad.mit.e...
Broad V$NFE2_01 View Gene Set 0.009468 208 0.04189 139 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGCTGAGTCAY which matches annotation for NFE2: nuclear factor (erythroid-derived 2) 45kDa www.broad.mit.e...
Broad V$HAND1E47_01 View Gene Set 0.009951 199 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNGNRTCTGGMWTT which matches annotation for HAND1: heart and neural crest derivatives expressed 1 www.broad.mit.e...
Broad V$HLF_01 View Gene Set 0.01013 194 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GTTACRYAAT which matches annotation for HLF: hepatic leukemia factor www.broad.mit.e...
Broad V$P53_02 View Gene Set 0.009934 189 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGRCWTGYCY which matches annotation for TP53: tumor protein p53 (Li-Fraumeni syndrome) www.broad.mit.e...
Broad V$HFH3_01 View Gene Set 0.01007 156 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif KNNTRTTTRTTTA which matches annotation for FOXI1: forkhead box I1 www.broad.mit.e...
Broad V$OCT1_B View Gene Set 0.01012 213 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TATGCAAATN which matches annotation for POU2F1: POU domain class 2 transcription factor 1 www.broad.mit.e...
Broad V$CHX10_01 View Gene Set 0.009878 182 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTAATTAGCNNN which matches annotation for VSX1: visual system homeobox 1 homolog CHX10-like (zebrafish) www.broad.mit.e...
Broad TATAAA_V$TATA_01 View Gene Set 0.009987 1012 0.04267 140 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TATAAA which matches annotation for TAF<br> TATA www.broad.mit.e...
Broad V$LFA1_Q6 View Gene Set 0.01108 186 0.04634 147 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGSTCWR which matches annotation for ITGAL: integrin alpha L (antigen CD11A (p180) lymphocyte function-associated antigen 1; alpha polypeptide) www.broad.mit.e...
Broad V$TTF1_Q6 View Gene Set 0.01125 197 0.04674 148 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNCAAGNRNN which matches annotation for TITF1: thyroid transcription factor 1 www.broad.mit.e...
Broad CATTGTYY_V$SOX9_B1 View Gene Set 0.01164 275 0.04803 149 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CATTGTYY which matches annotation for SOX9: SRY (sex determining region Y)-box 9 (campomelic dysplasia autosomal sex-reversal) www.broad.mit.e...
Broad V$TAL1ALPHAE47_01 View Gene Set 0.01218 192 0.04932 150 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNAACAGATGKTNNN which matches annotation for TAL1: T-cell acute lymphocytic leukemia 1<br> TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad V$EVI1_05 View Gene Set 0.01212 135 0.04932 150 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AGATAAGATAN which matches annotation for EVI1: ecotropic viral integration site 1 www.broad.mit.e...
Broad V$PITX2_Q2 View Gene Set 0.01219 206 0.04932 150 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WNTAATCCCAR which matches annotation for PITX2: paired-like homeodomain transcription factor 2 www.broad.mit.e...
Broad V$IRF1_Q6 View Gene Set 0.01232 200 0.04952 153 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTCACTT which matches annotation for IRF1: interferon regulatory factor 1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GCM_MAPK10 View Gene Set 2.137e-05 75 0.003161 1 Neighborhood of MAPK10 www.broad.mit.e...
Broad GNF2_DNM1 View Gene Set 1.067e-05 69 0.003161 1 Neighborhood of DNM1 www.broad.mit.e...
Broad GNF2_SPTA1 View Gene Set 2.221e-05 75 0.003161 1 Neighborhood of SPTA1 www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 8.783e-05 39 0.00923 4 Neighborhood of SIRT2 www.broad.mit.e...
Broad GNF2_JAK1 View Gene Set 0.0001297 28 0.00923 4 Neighborhood of JAK1 www.broad.mit.e...
Broad GNF2_RAB3A View Gene Set 0.0001166 34 0.00923 4 Neighborhood of RAB3A www.broad.mit.e...
Broad GNF2_BNIP3L View Gene Set 0.0002244 62 0.01369 7 Neighborhood of BNIP3L www.broad.mit.e...
Broad GNF2_ANK1 View Gene Set 0.0003039 68 0.01442 8 Neighborhood of ANK1 www.broad.mit.e...
Broad GNF2_SPTB View Gene Set 0.0003039 68 0.01442 8 Neighborhood of SPTB www.broad.mit.e...
Broad GNF2_RAD23A View Gene Set 0.0005913 61 0.02525 10 Neighborhood of RAD23A www.broad.mit.e...
Broad GNF2_FOS View Gene Set 0.0008183 35 0.02715 11 Neighborhood of FOS www.broad.mit.e...
Broad GNF2_ITGAL View Gene Set 0.0007691 49 0.02715 11 Neighborhood of ITGAL www.broad.mit.e...
Broad GNF2_MAPT View Gene Set 0.0008266 38 0.02715 11 Neighborhood of MAPT www.broad.mit.e...
Broad GNF2_PTPN4 View Gene Set 0.001017 47 0.02895 14 Neighborhood of PTPN4 www.broad.mit.e...
Broad GNF2_TAL1 View Gene Set 0.0009983 69 0.02895 14 Neighborhood of TAL1 www.broad.mit.e...
Broad GNF2_MAP2K3 View Gene Set 0.001189 67 0.03172 16 Neighborhood of MAP2K3 www.broad.mit.e...
Broad GNF2_IL2RB View Gene Set 0.001319 44 0.03313 17 Neighborhood of IL2RB www.broad.mit.e...
Broad GCM_AQP4 View Gene Set 0.001591 43 0.03773 18 Neighborhood of AQP4 www.broad.mit.e...
Broad GNF2_PTPN6 View Gene Set 0.001989 44 0.04469 19 Neighborhood of PTPN6 www.broad.mit.e...
Broad GNF2_HLA-C View Gene Set 0.00221 44 0.04718 20 Neighborhood of HLA-C www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_11 View Gene Set 2.106e-23 520 9.561e-21 1 Genes in module_11 www.broad.mit.e...
Broad module_66 View Gene Set 2.655e-22 530 6.028e-20 2 Genes in module_66 www.broad.mit.e...
Broad module_100 View Gene Set 1.177e-21 523 1.781e-19 3 Genes in module_100 www.broad.mit.e...
Broad module_137 View Gene Set 1.039e-20 525 1.179e-18 4 Genes in module_137 www.broad.mit.e...
Broad module_12 View Gene Set 1.472e-15 346 1.337e-13 5 Genes in module_12 www.broad.mit.e...
Broad module_2 View Gene Set 5.223e-15 373 3.952e-13 6 Genes in module_2 www.broad.mit.e...
Broad module_64 View Gene Set 7.759e-15 506 5.032e-13 7 Genes in module_64 www.broad.mit.e...
Broad module_1 View Gene Set 2.709e-13 355 1.538e-11 8 Genes in module_1 www.broad.mit.e...
Broad module_45 View Gene Set 3.41e-13 563 1.72e-11 9 Genes in module_45 www.broad.mit.e...
Broad module_84 View Gene Set 2.425e-12 526 1.101e-10 10 Genes in module_84 www.broad.mit.e...
Broad module_5 View Gene Set 4.389e-11 420 1.811e-09 11 Genes in module_5 www.broad.mit.e...
Broad module_88 View Gene Set 1.039e-10 812 3.932e-09 12 Genes in module_88 www.broad.mit.e...
Broad module_6 View Gene Set 1.189e-10 403 4.153e-09 13 Genes in module_6 www.broad.mit.e...
Broad module_55 View Gene Set 3.005e-10 807 9.744e-09 14 Genes in module_55 www.broad.mit.e...
Broad module_60 View Gene Set 5.235e-10 403 1.584e-08 15 Genes in module_60 www.broad.mit.e...
Broad module_27 View Gene Set 2.496e-09 345 7.081e-08 16 Genes in module_27 www.broad.mit.e...
Broad module_19 View Gene Set 4.111e-09 306 1.098e-07 17 Genes in module_19 www.broad.mit.e...
Broad module_75 View Gene Set 6.996e-09 391 1.765e-07 18 Genes in module_75 www.broad.mit.e...
Broad module_112 View Gene Set 1.881e-08 255 4.495e-07 19 Genes in module_112 www.broad.mit.e...
Broad module_220 View Gene Set 2.369e-08 328 5.378e-07 20 Genes in module_220 www.broad.mit.e...
Broad module_38 View Gene Set 5.064e-08 453 1.095e-06 21 Genes in module_38 www.broad.mit.e...
Broad module_212 View Gene Set 1.16e-07 316 2.393e-06 22 Genes in module_212 www.broad.mit.e...
Broad module_24 View Gene Set 1.989e-07 443 3.611e-06 23 Genes in module_24 www.broad.mit.e...
Broad module_44 View Gene Set 1.862e-07 319 3.611e-06 23 Genes in module_44 www.broad.mit.e...
Broad module_176 View Gene Set 1.956e-07 225 3.611e-06 23 Genes in module_176 www.broad.mit.e...
Broad module_23 View Gene Set 2.881e-07 552 5.03e-06 26 Genes in module_23 www.broad.mit.e...
Broad module_46 View Gene Set 3.645e-07 386 6.129e-06 27 Genes in module_46 www.broad.mit.e...
Broad module_33 View Gene Set 1.133e-06 369 1.836e-05 28 Genes in module_33 www.broad.mit.e...
Broad module_129 View Gene Set 3.208e-06 215 5.022e-05 29 Genes in module_129 www.broad.mit.e...
Broad module_117 View Gene Set 1.082e-05 699 0.0001637 30 Genes in module_117 www.broad.mit.e...
Broad module_63 View Gene Set 2.82e-05 210 0.000413 31 Genes in module_63 www.broad.mit.e...
Broad module_180 View Gene Set 6.115e-05 113 0.0008649 32 Genes in module_180 www.broad.mit.e...
Broad module_419 View Gene Set 6.287e-05 34 0.0008649 32 Genes in module_419 www.broad.mit.e...
Broad module_41 View Gene Set 0.0001172 542 0.001548 34 Genes in module_41 www.broad.mit.e...
Broad module_249 View Gene Set 0.0001193 21 0.001548 34 Genes in module_249 www.broad.mit.e...
Broad module_199 View Gene Set 0.0001548 57 0.001952 36 Genes in module_199 www.broad.mit.e...
Broad module_92 View Gene Set 0.0001632 146 0.002003 37 Genes in module_92 www.broad.mit.e...
Broad module_524 View Gene Set 0.0001745 30 0.002085 38 Genes in module_524 www.broad.mit.e...
Broad module_259 View Gene Set 0.0001813 46 0.00211 39 Genes in module_259 www.broad.mit.e...
Broad module_274 View Gene Set 0.0002836 82 0.003219 40 Genes in module_274 www.broad.mit.e...
Broad module_99 View Gene Set 0.0003043 346 0.00337 41 Genes in module_99 www.broad.mit.e...
Broad module_47 View Gene Set 0.0003286 216 0.003469 42 Genes in module_47 www.broad.mit.e...
Broad module_342 View Gene Set 0.0003233 195 0.003469 42 Genes in module_342 www.broad.mit.e...
Broad module_122 View Gene Set 0.0004092 138 0.004222 44 Genes in module_122 www.broad.mit.e...
Broad module_235 View Gene Set 0.0005628 81 0.005554 45 Genes in module_235 www.broad.mit.e...
Broad module_432 View Gene Set 0.0005533 15 0.005554 45 Genes in module_432 www.broad.mit.e...
Broad module_144 View Gene Set 0.0005868 8 0.005668 47 Genes in module_144 www.broad.mit.e...
Broad module_139 View Gene Set 0.0006884 74 0.006511 48 Genes in module_139 www.broad.mit.e...
Broad module_7 View Gene Set 0.0007291 227 0.006755 49 Genes in module_7 www.broad.mit.e...
Broad module_111 View Gene Set 0.0009721 151 0.008826 50 Genes in module_111 www.broad.mit.e...
Broad module_402 View Gene Set 0.001037 12 0.009231 51 Genes in module_402 www.broad.mit.e...
Broad module_85 View Gene Set 0.001068 51 0.009326 52 Genes in module_85 www.broad.mit.e...
Broad module_94 View Gene Set 0.001294 362 0.01108 53 Genes in module_94 www.broad.mit.e...
Broad module_357 View Gene Set 0.001691 78 0.01396 54 Genes in module_357 www.broad.mit.e...
Broad module_563 View Gene Set 0.001667 15 0.01396 54 Genes in module_563 www.broad.mit.e...
Broad module_113 View Gene Set 0.001878 105 0.01523 56 Genes in module_113 www.broad.mit.e...
Broad module_154 View Gene Set 0.002 73 0.01593 57 Genes in module_154 www.broad.mit.e...
Broad module_13 View Gene Set 0.002237 498 0.01722 58 Genes in module_13 www.broad.mit.e...
Broad module_297 View Gene Set 0.002213 78 0.01722 58 Genes in module_297 www.broad.mit.e...
Broad module_346 View Gene Set 0.002299 17 0.01739 60 Genes in module_346 www.broad.mit.e...
Broad module_157 View Gene Set 0.002347 105 0.01747 61 Genes in module_157 www.broad.mit.e...
Broad module_248 View Gene Set 0.002506 126 0.01835 62 Genes in module_248 www.broad.mit.e...
Broad module_213 View Gene Set 0.0026 77 0.01845 63 Genes in module_213 www.broad.mit.e...
Broad module_324 View Gene Set 0.002574 131 0.01845 63 Genes in module_324 www.broad.mit.e...
Broad module_408 View Gene Set 0.00309 18 0.02158 65 Genes in module_408 www.broad.mit.e...
Broad module_86 View Gene Set 0.003719 43 0.02558 66 Genes in module_86 www.broad.mit.e...
Broad module_40 View Gene Set 0.00381 81 0.02581 67 Genes in module_40 www.broad.mit.e...
Broad module_116 View Gene Set 0.003893 29 0.02599 68 Genes in module_116 www.broad.mit.e...
Broad module_143 View Gene Set 0.00503 14 0.0331 69 Genes in module_143 www.broad.mit.e...
Broad module_223 View Gene Set 0.005678 140 0.03613 70 Genes in module_223 www.broad.mit.e...
Broad module_234 View Gene Set 0.005729 53 0.03613 70 Genes in module_234 www.broad.mit.e...
Broad module_492 View Gene Set 0.005682 17 0.03613 70 Genes in module_492 www.broad.mit.e...
Broad module_119 View Gene Set 0.005962 135 0.03708 73 Genes in module_119 www.broad.mit.e...
Broad module_165 View Gene Set 0.006551 78 0.04019 74 Genes in module_165 www.broad.mit.e...
Broad module_169 View Gene Set 0.006952 95 0.04208 75 Genes in module_169 www.broad.mit.e...
Broad module_381 View Gene Set 0.007078 12 0.04228 76 Genes in module_381 www.broad.mit.e...
Broad module_239 View Gene Set 0.007451 112 0.04393 77 Genes in module_239 www.broad.mit.e...
Broad module_455 View Gene Set 0.007603 35 0.04425 78 Genes in module_455 www.broad.mit.e...
Broad module_321 View Gene Set 0.007791 107 0.04477 79 Genes in module_321 www.broad.mit.e...
Broad module_51 View Gene Set 0.008371 36 0.0475 80 Genes in module_51 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SYSTEM_DEVELOPMENT View Gene Set 2.215e-06 853 0.0009135 1 Genes annotated by the GO term GO:0048731. The process whose specific outcome is the progression of an organismal system over time from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. www.broad.mit.e...
Broad TRANSPORT View Gene Set 2.011e-06 777 0.0009135 1 Genes annotated by the GO term GO:0006810. The directed movement of substances (such as macromolecules small molecules ions) into out of within or between cells. www.broad.mit.e...
Broad ESTABLISHMENT_OF_LOCALIZATION View Gene Set 5.117e-06 851 0.001407 3 Genes annotated by the GO term GO:0051234. The directed movement of a cell substance or cellular entity such as a protein complex or organelle to a specific location. www.broad.mit.e...
Broad CELL_CELL_SIGNALING View Gene Set 1.266e-05 400 0.002089 4 Genes annotated by the GO term GO:0007267. Any process that mediates the transfer of information from one cell to another. www.broad.mit.e...
Broad ANATOMICAL_STRUCTURE_DEVELOPMENT View Gene Set 1.208e-05 1004 0.002089 4 Genes annotated by the GO term GO:0048856. The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel or microscopic such as an acrosome. www.broad.mit.e...
Broad CATION_TRANSPORT View Gene Set 2.092e-05 145 0.002877 6 Genes annotated by the GO term GO:0006812. The directed movement of cations atoms or small molecules with a net positive charge into out of within or between cells. www.broad.mit.e...
Broad SIGNAL_TRANSDUCTION View Gene Set 3.224e-05 1597 0.003799 7 Genes annotated by the GO term GO:0007165. The cascade of processes by which a signal interacts with a receptor causing a change in the level or activity of a second messenger or other downstream target and ultimately effecting a change in the functioning of the cell. www.broad.mit.e...
Broad CELL_SURFACE_RECEPTOR_LINKED_SIGNAL_TRANSDUCTION_GO_0007166 View Gene Set 3.903e-05 620 0.003866 8 Genes annotated by the GO term GO:0007166. Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell. www.broad.mit.e...
Broad ION_TRANSPORT View Gene Set 4.217e-05 183 0.003866 8 Genes annotated by the GO term GO:0006811. The directed movement of charged atoms or small charged molecules into out of within or between cells. www.broad.mit.e...
Broad MONOVALENT_INORGANIC_CATION_TRANSPORT View Gene Set 6.733e-05 92 0.005554 10 Genes annotated by the GO term GO:0015672. The directed movement of inorganic cations with a valency of one into out of within or between cells. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. www.broad.mit.e...
Broad REGULATION_OF_BIOLOGICAL_QUALITY View Gene Set 0.000158 406 0.01185 11 Genes annotated by the GO term GO:0065008. Any process that modulates the frequency rate or extent of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism such as size mass shape color etc. www.broad.mit.e...
Broad SYSTEM_PROCESS View Gene Set 0.0001893 558 0.01302 12 Genes annotated by the GO term GO:0003008. A biological process occurring at the level of an organ system pertinent to the function of the organism. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. www.broad.mit.e...
Broad NERVOUS_SYSTEM_DEVELOPMENT View Gene Set 0.0002874 380 0.01626 13 Genes annotated by the GO term GO:0007399. The process whose specific outcome is the progression of nervous tissue over time from its formation to its mature state. www.broad.mit.e...
Broad CARBOXYLIC_ACID_METABOLIC_PROCESS View Gene Set 0.0002723 173 0.01626 13 Genes annotated by the GO term GO:0019752. The chemical reactions and pathways involving carboxylic acids any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). www.broad.mit.e...
Broad ORGANIC_ACID_METABOLIC_PROCESS View Gene Set 0.0003153 175 0.01626 13 Genes annotated by the GO term GO:0006082. The chemical reactions and pathways involving organic acids any acidic compound containing carbon in covalent linkage. www.broad.mit.e...
Broad MULTICELLULAR_ORGANISMAL_DEVELOPMENT View Gene Set 0.0003138 1037 0.01626 13 Genes annotated by the GO term GO:0007275. The biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). www.broad.mit.e...
Broad LIPID_METABOLIC_PROCESS View Gene Set 0.0003797 317 0.01842 17 Genes annotated by the GO term GO:0006629. The chemical reactions and pathways involving lipids compounds soluble in an organic solvent but not or sparingly in an aqueous solvent. Includes fatty acids; neutral fats other fatty-acid esters and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids phospholipids and sphingolipids; and carotenes polyprenols sterols terpenes and other isoprenoids. www.broad.mit.e...
Broad TRANSMEMBRANE_RECEPTOR_PROTEIN_TYROSINE_KINASE_SIGNALING_PATHWAY View Gene Set 0.0004125 82 0.01891 18 Genes annotated by the GO term GO:0007169. The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand. www.broad.mit.e...
Broad ORGAN_DEVELOPMENT View Gene Set 0.0004471 567 0.01941 19 Genes annotated by the GO term GO:0048513. Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time from its formation to the mature structure. Organs are commonly observed as visibly distinct structures but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. www.broad.mit.e...
Broad METAL_ION_TRANSPORT View Gene Set 0.0005141 116 0.02121 20 Genes annotated by the GO term GO:0030001. The directed movement of metal ions any metal ion with an electric charge into out of within or between cells. www.broad.mit.e...
Broad VESICLE_LOCALIZATION View Gene Set 0.0005611 11 0.02204 21 Genes annotated by the GO term GO:0051648. The processes by which a vesicle or vesicles are transported to and/or maintained in a specific location. www.broad.mit.e...
Broad CELLULAR_CARBOHYDRATE_METABOLIC_PROCESS View Gene Set 0.0006632 122 0.02328 22 Genes annotated by the GO term GO:0044262. The chemical reactions and pathways involving carbohydrates any of a group of organic compounds based of the general formula Cx(H2O)y as carried out by individual cells. www.broad.mit.e...
Broad VESICLE_MEDIATED_TRANSPORT View Gene Set 0.0006426 188 0.02328 22 Genes annotated by the GO term GO:0016192. The directed movement of substances either within a vesicle or in the vesicle membrane into out of or within a cell. www.broad.mit.e...
Broad RESPONSE_TO_EXTERNAL_STIMULUS View Gene Set 0.0006773 305 0.02328 22 Genes annotated by the GO term GO:0009605. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an external stimulus. www.broad.mit.e...
Broad MONOCARBOXYLIC_ACID_METABOLIC_PROCESS View Gene Set 0.0007554 86 0.02493 25 Genes annotated by the GO term GO:0032787. The chemical reactions and pathways involving monocarboxylic acids any organic acid containing one carboxyl (COOH) group or anion (COO-). www.broad.mit.e...
Broad SYNAPTIC_TRANSMISSION View Gene Set 0.0009439 172 0.02995 26 Genes annotated by the GO term GO:0007268. The process of communication from a neuron to a target (neuron muscle or secretory cell) across a synapse. www.broad.mit.e...
Broad N_ACETYLGLUCOSAMINE_METABOLIC_PROCESS View Gene Set 0.0009913 12 0.03029 27 Genes annotated by the GO term GO:0006044. The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein. www.broad.mit.e...
Broad SULFUR_METABOLIC_PROCESS View Gene Set 0.001053 35 0.03104 28 Genes annotated by the GO term GO:0006790. The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur such as the amino acids methionine and cysteine or the tripeptide glutathione. www.broad.mit.e...
Broad ESTABLISHMENT_OF_VESICLE_LOCALIZATION View Gene Set 0.001111 10 0.03161 29 Genes annotated by the GO term GO:0051650. The directed movement of a vesicle to a specific location. www.broad.mit.e...
Broad DEFENSE_RESPONSE View Gene Set 0.001279 264 0.03518 30 Genes annotated by the GO term GO:0006952. Reactions triggered in response to the presence of a foreign body or the occurrence of an injury which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. www.broad.mit.e...
Broad HOMEOSTATIC_PROCESS View Gene Set 0.001344 202 0.03578 31 Genes annotated by the GO term GO:0042592. The biological processes involved in the maintenance of an internal equilibrium. www.broad.mit.e...
Broad ACTIN_FILAMENT_BASED_PROCESS View Gene Set 0.001509 115 0.03772 32 Genes annotated by the GO term GO:0030029. Any cellular process that depends upon or alters the actin cytoskeleton that part of the cytoskeleton comprising actin filaments and their associated proteins. www.broad.mit.e...
Broad TRANSMISSION_OF_NERVE_IMPULSE View Gene Set 0.001508 187 0.03772 32 Genes annotated by the GO term GO:0019226. The sequential electrochemical polarization and depolarization that travels across the membrane of a nerve cell (neuron) in response to stimulation. www.broad.mit.e...
Broad IMMUNE_RESPONSE View Gene Set 0.001579 232 0.03832 34 Genes annotated by the GO term GO:0006955. Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. www.broad.mit.e...
Broad CARBOHYDRATE_METABOLIC_PROCESS View Gene Set 0.001686 175 0.03974 35 Genes annotated by the GO term GO:0005975. The chemical reactions and pathways involving carbohydrates any of a group of organic compounds based of the general formula Cx(H2O)y. www.broad.mit.e...
Broad IMMUNE_SYSTEM_PROCESS View Gene Set 0.001977 326 0.0453 36 Genes annotated by the GO term GO:0002376. Any process involved in the development or functioning of the immune system an organismal system for calibrated responses to potential internal or invasive threats. www.broad.mit.e...
Broad CATION_HOMEOSTASIS View Gene Set 0.002103 104 0.0469 37 Genes annotated by the GO term GO:0055080. The regulation of the levels transport and metabolism of cations. www.broad.mit.e...
Broad ENZYME_LINKED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY View Gene Set 0.002316 139 0.04941 38 Genes annotated by the GO term GO:0007167. Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase. www.broad.mit.e...
Broad G_PROTEIN_COUPLED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY View Gene Set 0.002396 326 0.04941 38 Genes annotated by the GO term GO:0007186. The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand. www.broad.mit.e...
Broad POTASSIUM_ION_TRANSPORT View Gene Set 0.002336 58 0.04941 38 Genes annotated by the GO term GO:0006813. The directed movement of potassium ions (K+) into out of within or between cells. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad PLASMA_MEMBRANE View Gene Set 1.216e-20 1392 2.832e-18 1 Genes annotated by the GO term GO:0005886. The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. www.broad.mit.e...
Broad MEMBRANE View Gene Set 1.799e-18 1939 2.096e-16 2 Genes annotated by the GO term GO:0016020. Double layer of lipid molecules that encloses all cells and in eukaryotes many organelles; may be a single or double lipid bilayer; also includes associated proteins. www.broad.mit.e...
Broad INTRINSIC_TO_MEMBRANE View Gene Set 3.127e-18 1319 2.429e-16 3 Genes annotated by the GO term GO:0031224. Located in a membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad INTEGRAL_TO_MEMBRANE View Gene Set 6.837e-18 1301 3.982e-16 4 Genes annotated by the GO term GO:0016021. Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein indicates that all or part of the peptide sequence is embedded in the membrane. www.broad.mit.e...
Broad INTRINSIC_TO_PLASMA_MEMBRANE View Gene Set 6.13e-17 978 2.857e-15 5 Genes annotated by the GO term GO:0031226. Located in the plasma membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad PLASMA_MEMBRANE_PART View Gene Set 1.244e-16 1142 4.829e-15 6 Genes annotated by the GO term GO:0044459. Any constituent part of the plasma membrane the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. www.broad.mit.e...
Broad INTEGRAL_TO_PLASMA_MEMBRANE View Gene Set 1.643e-16 964 5.468e-15 7 Genes annotated by the GO term GO:0005887. Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad MEMBRANE_PART View Gene Set 5.478e-16 1632 1.596e-14 8 Genes annotated by the GO term GO:0044425. Any constituent part of a membrane a double layer of lipid molecules that encloses all cells and in eukaryotes many organelles; may be a single or double lipid bilayer; also includes associated proteins. www.broad.mit.e...
Broad MEMBRANE_FRACTION View Gene Set 7.124e-08 333 1.844e-06 9 Genes annotated by the GO term GO:0005624. That fraction of cells prepared by disruptive biochemical methods that includes the plasma and other membranes. www.broad.mit.e...
Broad CELL_FRACTION View Gene Set 8.772e-07 484 2.044e-05 10 Genes annotated by the GO term GO:0000267. A generic term for parts of cells prepared by disruptive biochemical techniques. www.broad.mit.e...
Broad ACTIN_CYTOSKELETON View Gene Set 2.328e-06 127 4.931e-05 11 Genes annotated by the GO term GO:0015629. The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. www.broad.mit.e...
Broad INTEGRAL_TO_GOLGI_MEMBRANE View Gene Set 0.0003379 10 0.00656 12 Genes annotated by the GO term GO:0030173. Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad LYSOSOMAL_MEMBRANE View Gene Set 0.0009142 10 0.01639 13 Genes annotated by the GO term GO:0005765. The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. www.broad.mit.e...
Broad VACUOLAR_MEMBRANE View Gene Set 0.001443 11 0.02402 14 Genes annotated by the GO term GO:0005774. The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. www.broad.mit.e...
Broad VACUOLAR_PART View Gene Set 0.002681 13 0.03904 15 Genes annotated by the GO term GO:0044437. Any constituent part of a vacuole a closed structure found only in eukaryotic cells that is completely surrounded by unit membrane and contains liquid material. www.broad.mit.e...
Broad ACTIN_FILAMENT View Gene Set 0.002639 18 0.03904 15 Genes annotated by the GO term GO:0005884. A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments comprising polymerized globular actin molecules appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles two-dimensional networks and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SUBSTRATE_SPECIFIC_TRANSPORTER_ACTIVITY View Gene Set 9.314e-09 389 3.688e-06 1 Genes annotated by the GO term GO:0022892. Enables the directed movement of a specific substance or group of related substances (such as macromolecules small molecules ions) into out of within or between cells. www.broad.mit.e...
Broad SUBSTRATE_SPECIFIC_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 3.053e-08 341 4.125e-06 2 Genes annotated by the GO term GO:0022891. Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other. www.broad.mit.e...
Broad TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 3.125e-08 371 4.125e-06 2 Genes annotated by the GO term GO:0022857. Catalysis of the transfer of a substance from one side of a membrane to the other. www.broad.mit.e...
Broad RECEPTOR_ACTIVITY View Gene Set 5.977e-07 572 5.917e-05 4 Genes annotated by the GO term GO:0004872. Combining with an extracellular or intracellular messenger to initiate a change in cell activity. www.broad.mit.e...
Broad ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 1.848e-06 275 0.0001464 5 Genes annotated by the GO term GO:0015075. Catalysis of the transfer of an ion from one side of a membrane to the other. www.broad.mit.e...
Broad CATION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 5.217e-06 211 0.0003443 6 Genes annotated by the GO term GO:0008324. Catalysis of the transfer of cation from one side of the membrane to the other. www.broad.mit.e...
Broad ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 1.839e-05 122 0.0009797 7 Genes annotated by the GO term GO:0022804. Catalysis of the transfer of a specific substance or related group of substances from one side of a membrane to the other up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction. www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS View Gene Set 1.979e-05 24 0.0009797 7 Genes annotated by the GO term GO:0042625. Catalysis of the transfer of an ion from one side of a membrane to the other driven by the reaction: ATP + H2O = ADP + phosphate. www.broad.mit.e...
Broad PHOSPHOTRANSFERASE_ACTIVITY_ALCOHOL_GROUP_AS_ACCEPTOR View Gene Set 2.691e-05 326 0.001184 9 Genes annotated by the GO term GO:0016773. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). www.broad.mit.e...
Broad PROTEIN_KINASE_ACTIVITY View Gene Set 3.905e-05 278 0.001547 10 Genes annotated by the GO term GO:0004672. Catalysis of the phosphorylation of an amino acid residue in a protein usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. www.broad.mit.e...
Broad CATION_TRANSPORTING_ATPASE_ACTIVITY View Gene Set 6.508e-05 11 0.002343 11 Genes annotated by the GO term GO:0019829. Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). www.broad.mit.e...
Broad TRANSMEMBRANE_RECEPTOR_ACTIVITY View Gene Set 8.917e-05 411 0.002943 12 Genes annotated by the GO term GO:0004888. Combining with an extracellular or intracellular messenger to initiate a change in cell activity and spanning to the membrane of either the cell or an organelle. www.broad.mit.e...
Broad KINASE_ACTIVITY View Gene Set 0.0001859 359 0.005664 13 Genes annotated by the GO term GO:0016301. Catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad PRIMARY_ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0002162 40 0.006061 14 Genes annotated by the GO term GO:0015399. Catalysis of the transfer of a solute from one side of the membrane to the other up the solute's concentration gradient by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is powered by a primary energy source. Primary energy sources known to be coupled to transport are chemical electrical and solar sources. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS View Gene Set 0.0002296 414 0.006061 14 Genes annotated by the GO term GO:0016772. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED_TO_MOVEMENT_OF_SUBSTANCES View Gene Set 0.0002917 40 0.007219 16 Genes annotated by the GO term GO:0043492. Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of a substance. www.broad.mit.e...
Broad NUCLEOTIDE_BINDING View Gene Set 0.0003268 218 0.007613 17 Genes annotated by the GO term GO:0000166. Interacting selectively with a nucleotide any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety. www.broad.mit.e...
Broad HYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDESCATALYZING_TRANSMEMBRANE_MOVEMENT_OF_SUBSTANCES View Gene Set 0.0003807 39 0.008375 18 Genes annotated by the GO term GO:0016820. Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane. www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS_PHOSPHORYLATIVE_MECHANISM View Gene Set 0.0005734 20 0.01195 19 Genes annotated by the GO term GO:0015662. Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate. www.broad.mit.e...
Broad TRANSMEMBRANE_RECEPTOR_PROTEIN_KINASE_ACTIVITY View Gene Set 0.0007027 51 0.01215 20 Genes annotated by the GO term GO:0019199. www.broad.mit.e...
Broad PURINE_NUCLEOTIDE_BINDING View Gene Set 0.0006766 205 0.01215 20 Genes annotated by the GO term GO:0017076. Interacting selectively with purine nucleotides any compound consisting of a purine nucleoside esterified with (ortho)phosphate. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS View Gene Set 0.0007367 23 0.01215 20 Genes annotated by the GO term GO:0016627. Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...
Broad METAL_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0006542 145 0.01215 20 Genes annotated by the GO term GO:0046873. Catalysis of the transfer of metal ions from one side of a membrane to the other. www.broad.mit.e...
Broad INORGANIC_CATION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.0007211 57 0.01215 20 Genes annotated by the GO term GO:0022890. Catalysis of the transfer of inorganic cations from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage. www.broad.mit.e...
Broad PURINE_RIBONUCLEOTIDE_BINDING View Gene Set 0.001158 200 0.01834 25 Genes annotated by the GO term GO:0032555. Interacting selectively with a purine ribonucleotide any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY View Gene Set 0.001312 280 0.01856 26 Genes annotated by the GO term GO:0016491. Catalysis of an oxidation-reduction (redox) reaction a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized while the other acts as hydrogen or electron acceptor and becomes reduced. www.broad.mit.e...
Broad PHOSPHORIC_DIESTER_HYDROLASE_ACTIVITY View Gene Set 0.001278 39 0.01856 26 Genes annotated by the GO term GO:0008081. Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. www.broad.mit.e...
Broad GTPASE_ACTIVITY View Gene Set 0.001277 98 0.01856 26 Genes annotated by the GO term GO:0003924. Catalysis of the reaction: GTP + H2O = GDP + phosphate. www.broad.mit.e...
Broad TRANSMEMBRANE_RECEPTOR_PROTEIN_TYROSINE_KINASE_ACTIVITY View Gene Set 0.001435 43 0.0196 29 Genes annotated by the GO term GO:0004714. Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate to initiate a change in cell activity. www.broad.mit.e...
Broad CALCIUM_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.001619 11 0.02136 30 Genes annotated by the GO term GO:0015085. Catalysis of the transfer of calcium (Ca) ions from one side of a membrane to the other. www.broad.mit.e...
Broad STRUCTURAL_CONSTITUENT_OF_CYTOSKELETON View Gene Set 0.001872 57 0.02391 31 Genes annotated by the GO term GO:0005200. The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. www.broad.mit.e...
Broad POTASSIUM_CHANNEL_REGULATOR_ACTIVITY View Gene Set 0.002301 13 0.02848 32 Genes annotated by the GO term GO:0015459. www.broad.mit.e...
Broad ADENYL_NUCLEOTIDE_BINDING View Gene Set 0.002812 163 0.03375 33 Genes annotated by the GO term GO:0030554. Interacting selectively with adenyl nucleotides any compound consisting of adenosine esterified with (ortho)phosphate. www.broad.mit.e...
Broad HORMONE_BINDING View Gene Set 0.003062 13 0.03566 34 Genes annotated by the GO term GO:0042562. Interacting selectively with any hormone naturally occurring substances secreted by specialized cells that affect the metabolism or behavior of other cells possessing functional receptors for the hormone. www.broad.mit.e...
Broad HYDRO_LYASE_ACTIVITY View Gene Set 0.003432 27 0.03636 35 Genes annotated by the GO term GO:0016836. Catalysis of the cleavage of a carbon-oxygen bond by elimination of water. www.broad.mit.e...
Broad LYASE_ACTIVITY View Gene Set 0.003473 68 0.03636 35 Genes annotated by the GO term GO:0016829. Catalysis of the cleavage of C-C C-O C-N and other bonds by other means than by hydrolysis or oxidation or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction but only one in the other direction. When acting on the single substrate a molecule is eliminated and this generates either a new double bond or a new ring. www.broad.mit.e...
Broad GATED_CHANNEL_ACTIVITY View Gene Set 0.003257 121 0.03636 35 Genes annotated by the GO term GO:0022836. Catalysis of the transmembrane transfer of a solute by a channel that opens in response to a specific stimulus. www.broad.mit.e...
Broad ACTIN_BINDING View Gene Set 0.003489 76 0.03636 35 Genes annotated by the GO term GO:0003779. Interacting selectively with monomeric or multimeric forms of actin including actin filaments. www.broad.mit.e...
Broad PROTEIN_SERINE_THREONINE_KINASE_ACTIVITY View Gene Set 0.003793 200 0.03703 39 Genes annotated by the GO term GO:0004674. Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate. www.broad.mit.e...
Broad LIPID_TRANSPORTER_ACTIVITY View Gene Set 0.003763 28 0.03703 39 Genes annotated by the GO term GO:0005319. Enables the directed movement of lipids into out of within or between cells. www.broad.mit.e...
Broad PHOSPHOLIPID_TRANSPORTER_ACTIVITY View Gene Set 0.003834 12 0.03703 39 Genes annotated by the GO term GO:0005548. Enables the directed movement of phospholipids into out of within or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester. www.broad.mit.e...
Broad DI___TRI_VALENT_INORGANIC_CATION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY View Gene Set 0.00463 22 0.04322 42 Genes annotated by the GO term GO:0015082. Catalysis of the transfer of inorganic cations with a valency of two or three from one side of the membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage. www.broad.mit.e...
Broad ADENYL_RIBONUCLEOTIDE_BINDING View Gene Set 0.004802 158 0.04322 42 Genes annotated by the GO term GO:0032559. Interacting selectively with an adenyl ribonucleotide any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. www.broad.mit.e...
Broad SUBSTRATE_SPECIFIC_CHANNEL_ACTIVITY View Gene Set 0.00476 154 0.04322 42 Genes annotated by the GO term GO:0022838. Catalysis of energy-independent facilitated diffusion mediated by passage of a specific solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. www.broad.mit.e...
Broad ACTIN_FILAMENT_BINDING View Gene Set 0.005189 25 0.04566 45 Genes annotated by the GO term GO:0051015. Interacting selectively with an actin filament also known as F-actin a helical filamentous polymer of globular G-actin subunits. www.broad.mit.e...
Broad CHANNEL_REGULATOR_ACTIVITY View Gene Set 0.005539 23 0.04768 46 Genes annotated by the GO term GO:0016247. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 11836511 View Gene Set 5.024e-06 22 0.001936 1 The vacuolar (H+)-ATPases--nature's most versatile proton pumps. www.ncbi.nlm.ni...
PMID 12788495 View Gene Set 5.024e-06 22 0.001936 1 Proton translocation driven by ATP hydrolysis in V-ATPases. www.ncbi.nlm.ni...
PMID 14580332 View Gene Set 5.024e-06 22 0.001936 1 Revised nomenclature for mammalian vacuolar-type H+ -ATPase subunit genes. www.ncbi.nlm.ni...
PMID 14597263 View Gene Set 5.024e-06 22 0.001936 1 Neurotransmitter release: the dark side of the vacuolar-H+ATPase. www.ncbi.nlm.ni...
PMID 18660489 View Gene Set 3.433e-06 250 0.001936 1 Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations. www.ncbi.nlm.ni...
PMID 20237496 View Gene Set 2.189e-06 828 0.001936 1 New genetic associations detected in a host response study to hepatitis B vaccine. www.ncbi.nlm.ni...
PMID 9442887 View Gene Set 5.405e-06 19 0.001936 1 Structure function and regulation of the vacuolar (H+)-ATPase. www.ncbi.nlm.ni...
PMID 10221984 View Gene Set 1.579e-05 18 0.002827 8 Vacuolar and plasma membrane proton-adenosinetriphosphatases. www.ncbi.nlm.ni...
PMID 10224039 View Gene Set 1.579e-05 18 0.002827 8 Structure and properties of the vacuolar (H+)-ATPases. www.ncbi.nlm.ni...
PMID 10340843 View Gene Set 1.579e-05 18 0.002827 8 Introduction: V-ATPases 1992-1998. www.ncbi.nlm.ni...
PMID 10440860 View Gene Set 1.579e-05 18 0.002827 8 Animal plasma membrane energization by proton-motive V-ATPases. www.ncbi.nlm.ni...
PMID 17081065 View Gene Set 1.115e-05 80 0.002827 8 Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. www.ncbi.nlm.ni...
PMID 19086053 View Gene Set 1.051e-05 301 0.002827 8 Identification of new putative susceptibility genes for several psychiatric disorders by association analysis of regulatory and non-synonymous SNPs of 306 genes involved in neurotransmission and neurodevelopment. www.ncbi.nlm.ni...
PMID 9210392 View Gene Set 1.579e-05 18 0.002827 8 The vacuolar H+-ATPase: a universal proton pump of eukaryotes. www.ncbi.nlm.ni...
PMID 12643545 View Gene Set 1.974e-05 29 0.003299 15 Proteomic analysis of early melanosomes: identification of novel melanosomal proteins. www.ncbi.nlm.ni...
PMID 19861144 View Gene Set 4.656e-05 21 0.006866 16 Activating killer cell immunoglobulin-like receptors 3DS1 and 2DS1 protect against developing the severe form of recurrent respiratory papillomatosis. www.ncbi.nlm.ni...
PMID 20492596 View Gene Set 4.656e-05 22 0.006866 16 Distribution of KIR genes in the population of unrelated individuals homozygous for ancestral haplotype AH8.1 (HLA-A1B8DR3). www.ncbi.nlm.ni...
PMID 10207129 View Gene Set 9.057e-05 20 0.006881 18 Eph receptors and ephrins: effectors of morphogenesis. www.ncbi.nlm.ni...
PMID 10730216 View Gene Set 9.057e-05 21 0.006881 18 Eph receptors and ephrins: regulators of guidance and assembly. www.ncbi.nlm.ni...
PMID 11128993 View Gene Set 9.057e-05 21 0.006881 18 Roles of Eph receptors and ephrins in segmental patterning. www.ncbi.nlm.ni...
PMID 11256076 View Gene Set 9.057e-05 20 0.006881 18 Multiple roles of EPH receptors and ephrins in neural development. www.ncbi.nlm.ni...
PMID 18571006 View Gene Set 8.378e-05 19 0.006881 18 KIR and HLA gene combinations in Vogt-Koyanagi-Harada disease. www.ncbi.nlm.ni...
PMID 18778326 View Gene Set 8.378e-05 19 0.006881 18 Association between killer-cell immunoglobulin-like receptor genotypes and leprosy in Brazil. www.ncbi.nlm.ni...
PMID 18848853 View Gene Set 8.378e-05 19 0.006881 18 Killer cell immunoglobulin-like receptor gene diversity in a Southern Brazilian population from the state of ParanĂ¡. www.ncbi.nlm.ni...
PMID 19156168 View Gene Set 8.84e-05 118 0.006881 18 Pharmacogenetics of antipsychotic response in the CATIE trial: a candidate gene analysis. www.ncbi.nlm.ni...
PMID 19630074 View Gene Set 8.378e-05 18 0.006881 18 Killer immunoglobulin-like receptor ligand HLA-Bw4 protects against multiple sclerosis. www.ncbi.nlm.ni...
PMID 19968064 View Gene Set 8.378e-05 17 0.006881 18 [Effects of killer immunoglobulin-like receptor and human leukocyte antigen class I ligand on the prognosis of related donor hematopoitic stem cell transplantation]. www.ncbi.nlm.ni...
PMID 20173792 View Gene Set 8.378e-05 17 0.006881 18 The role of killer immunoglobulin-like receptor haplotypes on the outcome of unrelated donor haematopoietic SCT for thalassaemia. www.ncbi.nlm.ni...
PMID 20193031 View Gene Set 8.378e-05 20 0.006881 18 Compound KIR-HLA genotype analyses in the Iranian population by a novel PCR-SSP assay. www.ncbi.nlm.ni...
PMID 20519398 View Gene Set 8.378e-05 18 0.006881 18 Influence of HLA class I and HLA-KIR compound genotypes on HIV-2 infection and markers of disease progression in a Manjako community in West Africa. www.ncbi.nlm.ni...
PMID 9267020 View Gene Set 9.057e-05 20 0.006881 18 Unified nomenclature for Eph family receptors and their ligands the ephrins. Eph Nomenclature Committee. www.ncbi.nlm.ni...
PMID 9530499 View Gene Set 9.057e-05 20 0.006881 18 The ephrins and Eph receptors in neural development. www.ncbi.nlm.ni...
PMID 9576626 View Gene Set 9.057e-05 20 0.006881 18 The Eph family receptors and ligands. www.ncbi.nlm.ni...
PMID 20173784 View Gene Set 0.0001008 17 0.007434 34 The beneficial impact of missing KIR ligands and absence of donor KIR2DS3 gene on outcome following unrelated hematopoietic SCT for myeloid leukemia in the Chinese population. www.ncbi.nlm.ni...
PMID 20210918 View Gene Set 0.0001242 18 0.008897 35 Distribution of killer cell immunoglobulin-like receptor genes in the mestizo population from Venezuela. www.ncbi.nlm.ni...
PMID 17868255 View Gene Set 0.0001784 16 0.01016 36 No association of KIR genes with Behcet's disease. www.ncbi.nlm.ni...
PMID 18996102 View Gene Set 0.0001673 117 0.01016 36 Physiogenomic comparison of edema and BMI in patients receiving rosiglitazone or pioglitazone. www.ncbi.nlm.ni...
PMID 19046302 View Gene Set 0.0001537 18 0.01016 36 Combination of KIR 2DL2 and HLA-C1 (Asn 80) confers susceptibility to type 1 diabetes in Latvians. www.ncbi.nlm.ni...
PMID 19110265 View Gene Set 0.0001687 24 0.01016 36 Proteomic analysis of dorsolateral prefrontal cortex indicates the involvement of cytoskeleton oligodendrocyte energy metabolism and new potential markers in schizophrenia. www.ncbi.nlm.ni...
PMID 19169284 View Gene Set 0.0001784 17 0.01016 36 KIR genes and KIR ligands affect occurrence of acute GVHD after unrelated 12/12 HLA matched hematopoietic stem cell transplantation. www.ncbi.nlm.ni...
PMID 19846535 View Gene Set 0.0001784 18 0.01016 36 Effect of killer immunoglobulin-like receptors in the response to combined treatment in patients with chronic hepatitis C virus infection. www.ncbi.nlm.ni...
PMID 20331834 View Gene Set 0.0001642 16 0.01016 36 Report from the killer immunoglobulin-like receptor (KIR) anthropology component of the 15th International Histocompatibility Workshop: worldwide variation in the KIR loci and further evidence for the co-evolution of KIR and HLA. www.ncbi.nlm.ni...
PMID 20426625 View Gene Set 0.0001638 20 0.01016 36 HLA and KIR frequencies in Sicilian Centenarians. www.ncbi.nlm.ni...
PMID 20483367 View Gene Set 0.0001642 16 0.01016 36 Role of killer cell immunoglobulin-like receptor gene content and human leukocyte antigen-C group in susceptibility to human T-lymphotropic virus 1-associated myelopathy/tropical spastic paraparesis in Peru. www.ncbi.nlm.ni...
PMID 19493232 View Gene Set 0.0002186 15 0.01191 45 Killer immunoglobulin-like receptors (KIR2DL2 and/or KIR2DS2) in presence of their ligand (HLA-C1 group) protect against chronic myeloid leukaemia. www.ncbi.nlm.ni...
PMID 19850842 View Gene Set 0.0002186 15 0.01191 45 Killer cell immunoglobulin-like receptors in HLA-B27-associated acute anterior uveitis with and without axial spondyloarthropathy. www.ncbi.nlm.ni...
PMID 18643961 View Gene Set 0.0002456 16 0.01256 47 A study of the killer cell immunoglobulin-like receptor gene KIR2DS1 in a Caucasoid Brazilian population with psoriasis vulgaris. www.ncbi.nlm.ni...
PMID 19326408 View Gene Set 0.0002456 15 0.01256 47 Killer cell immunoglobulin-like receptor genotype and killer cell immunoglobulin-like receptor-human leukocyte antigen C ligand compatibility affect the severity of hepatitis C virus recurrence after liver transplantation. www.ncbi.nlm.ni...
PMID 20356536 View Gene Set 0.0002456 15 0.01256 47 [Killer cell immunoglobin-like receptor and its ligand gene polymorphisms in Hunan Han patients with type 1 diabetes]. www.ncbi.nlm.ni...
PMID 20082482 View Gene Set 0.0002671 29 0.01339 50 Immunogenetic characteristics of patients with autoimmune gastritis. www.ncbi.nlm.ni...
PMID 19032228 View Gene Set 0.0002753 17 0.01353 51 Natural killer cell receptor repertoire and their ligands and the risk of CMV infection after kidney transplantation. www.ncbi.nlm.ni...
PMID 9446795 View Gene Set 0.0002915 21 0.01405 52 Extracellular HIV-1 Tat protein induces a rapid and selective activation of protein kinase C (PKC)-alpha and -epsilon and -zeta isoforms in PC12 cells. www.ncbi.nlm.ni...
PMID 12960231 View Gene Set 0.0003143 17 0.0145 53 Macrophage activation through CCR5- and CXCR4-mediated gp120-elicited signaling pathways. www.ncbi.nlm.ni...
PMID 20200544 View Gene Set 0.0003181 18 0.0145 53 Signatures of natural selection and coevolution between killer cell immunoglobulin-like receptors (KIR) and HLA class I genes. www.ncbi.nlm.ni...
PMID 20210919 View Gene Set 0.0003086 16 0.0145 53 HLA-DQA1*0505 sharing and killer immunoglobulin-like receptors in sub fertile couples: report from the 15th International Histocompatibility Workshop. www.ncbi.nlm.ni...
PMID 11154208 View Gene Set 0.0004084 22 0.01639 56 HIV-1 Tat promotes monocyte chemoattractant protein-1 secretion followed by transmigration of monocytes. www.ncbi.nlm.ni...
PMID 12754519 View Gene Set 0.0003995 71 0.01639 56 Identification and quantification of N-linked glycoproteins using hydrazide chemistry stable isotope labeling and mass spectrometry. www.ncbi.nlm.ni...
PMID 15689238 View Gene Set 0.0004056 25 0.01639 56 Signalling crosstalk in FGF2-mediated protection of endothelial cells from HIV-gp120. www.ncbi.nlm.ni...
PMID 15896204 View Gene Set 0.0004838 14 0.01639 56 Distribution of killer cell immunoglobulin-like receptor genes in the Chinese Han population. www.ncbi.nlm.ni...
PMID 18628988 View Gene Set 0.0004183 22 0.01639 56 Neither replication nor simulation supports a role for the axon guidance pathway in the genetics of Parkinson's disease. www.ncbi.nlm.ni...
PMID 18668235 View Gene Set 0.0004838 16 0.01639 56 Asian population frequencies and haplotype distribution of killer cell immunoglobulin-like receptor (KIR) genes among Chinese Malay and Indian in Singapore. www.ncbi.nlm.ni...
PMID 19000141 View Gene Set 0.0004838 16 0.01639 56 Diversity of killer cell immunoglobulin-like receptor genes in Indonesian populations of Java Kalimantan Timor and Irian Jaya. www.ncbi.nlm.ni...
PMID 19058789 View Gene Set 0.0004275 129 0.01639 56 A common variant in DRD3 receptor is associated with autism spectrum disorder. www.ncbi.nlm.ni...
PMID 19218127 View Gene Set 0.0004838 17 0.01639 56 [Analysis of natural killer cell immunoglobulin-like receptor genes in Chinese]. www.ncbi.nlm.ni...
PMID 19279038 View Gene Set 0.0004838 16 0.01639 56 Influence of activating and inhibitory killer immunoglobulin-like receptors on predisposition to recurrent miscarriages. www.ncbi.nlm.ni...
PMID 19309280 View Gene Set 0.0004838 16 0.01639 56 Distribution of killer cell immunoglobulin-like receptor (KIR) genotypes in patients with familial Mediterranean fever. www.ncbi.nlm.ni...
PMID 19450876 View Gene Set 0.0004838 17 0.01639 56 Killer cell immunoglobulin-like receptor gene polymorphisms in patients with leukemia: possible association with susceptibility to the disease. www.ncbi.nlm.ni...
PMID 19527230 View Gene Set 0.0004838 16 0.01639 56 Activating killer cell immunoglobulin-like receptor genes' association with recurrent miscarriage. www.ncbi.nlm.ni...
PMID 19761533 View Gene Set 0.0004838 17 0.01639 56 Distribution of killer-cell immunoglobulin-like receptor genes in Eastern mainland Chinese Han and Taiwanese Han populations. www.ncbi.nlm.ni...
PMID 19875891 View Gene Set 0.0004838 14 0.01639 56 Frequencies of killer immunoglobulin-like receptor genotypes influence susceptibility to spontaneous abortion. www.ncbi.nlm.ni...
PMID 19897003 View Gene Set 0.0004838 16 0.01639 56 Killer cell immunoglobulin-like receptor gene-cluster 3DS1-2DL5-2DS1-2DS5 predisposes susceptibility to Vogt-Koyanagi-Harada syndrome in Japanese individuals. www.ncbi.nlm.ni...
PMID 19926642 View Gene Set 0.0004838 15 0.01639 56 Disparate distribution of activating and inhibitory killer cell immunoglobulin-like receptor genes in patients with systemic lupus erythematosus. www.ncbi.nlm.ni...
PMID 19934297 View Gene Set 0.0003706 13 0.01639 56 KIR and HLA genotypes are associated with disease progression and survival following autologous hematopoietic stem cell transplantation for high-risk neuroblastoma. www.ncbi.nlm.ni...
PMID 20082646 View Gene Set 0.0004838 15 0.01639 56 Killer cell immunoglobulin-like receptor gene diversity in a Caucasian population of southern Brazil. www.ncbi.nlm.ni...
PMID 16335952 View Gene Set 0.0005564 257 0.0186 75 Human plasma N-glycoproteome analysis by immunoaffinity subtraction hydrazide chemistry and mass spectrometry. www.ncbi.nlm.ni...
PMID 7539755 View Gene Set 0.000584 21 0.01927 76 Modulation of CD4 lateral interaction with lymphocyte surface molecules induced by HIV-1 gp120. www.ncbi.nlm.ni...
PMID 11751963 View Gene Set 0.0006229 21 0.02027 77 Native HIV-1 Tat protein targets monocyte-derived dendritic cells and enhances their maturation function and antigen-specific T cell responses. www.ncbi.nlm.ni...
PMID 15146195 View Gene Set 0.0006318 22 0.02027 77 Time-controlled transcardiac perfusion cross-linking for the study of protein interactions in complex tissues. www.ncbi.nlm.ni...
PMID 19120281 View Gene Set 0.0006468 13 0.02027 77 Different KIRs confer susceptibility and protection to adults with latent autoimmune diabetes in Latvian and Asian Indian populations. www.ncbi.nlm.ni...
PMID 19936734 View Gene Set 0.0006468 12 0.02027 77 Distribution of killer cell immunoglobulin-like receptors (KIR) and their HLA-C ligands in two Iranian populations. www.ncbi.nlm.ni...
PMID 18814951 View Gene Set 0.0006691 10 0.02071 81 Gene-expression profiles of peripheral blood mononuclear cell subpopulations in acute graft-vs-host disease following cord blood transplantation. www.ncbi.nlm.ni...
PMID 11786539 View Gene Set 0.0007214 10 0.02193 82 The delta subunit of retinal rod cGMP phosphodiesterase regulates the membrane association of Ras and Rap GTPases. www.ncbi.nlm.ni...
PMID 15117958 View Gene Set 0.00073 11 0.02193 82 90-kDa ribosomal S6 kinase is a direct target for the nuclear fibroblast growth factor receptor 1 (FGFR1): role in FGFR1 signaling. www.ncbi.nlm.ni...
PMID 18487259 View Gene Set 0.0007434 10 0.02193 82 Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. www.ncbi.nlm.ni...
PMID 8755474 View Gene Set 0.0007348 16 0.02193 82 Eph receptors and ligands comprise two major specificity subclasses and are reciprocally compartmentalized during embryogenesis. www.ncbi.nlm.ni...
PMID 19181658 View Gene Set 0.0007973 12 0.02324 86 Association of killer cell immunoglobulin-like receptors with primary Sjogren's syndrome. www.ncbi.nlm.ni...
PMID 16403292 View Gene Set 0.0008677 16 0.02472 87 [Polymorphism of killer cell immunoglobulin-like receptors gene family in Zhejiang Han population]. www.ncbi.nlm.ni...
PMID 17498266 View Gene Set 0.0008677 15 0.02472 87 KIR genes polymorphism in Argentinean Caucasoid and Amerindian populations. www.ncbi.nlm.ni...
PMID 10229200 View Gene Set 0.0008897 10 0.02506 89 Differential effects of the widely expressed dMax splice variant of Max on E-box vs initiator element-mediated regulation by c-Myc. www.ncbi.nlm.ni...
PMID 20371502 View Gene Set 0.0009483 12 0.02641 90 Association of killer cell immunoglobulin-like receptor 2DL5 with systemic lupus erythematosus and accompanying infections. www.ncbi.nlm.ni...
PMID 19305409 View Gene Set 0.001036 19 0.02853 91 Common variants at ten loci modulate the QT interval duration in the QTSCD Study. www.ncbi.nlm.ni...
PMID 20351714 View Gene Set 0.001075 51 0.0293 92 Poor replication of candidate genes for major depressive disorder using genome-wide association data. www.ncbi.nlm.ni...
PMID 19148283 View Gene Set 0.001105 19 0.02979 93 Genetic differences between the determinants of lipid profile phenotypes in African and European Americans: the Jackson Heart Study. www.ncbi.nlm.ni...
PMID 15340161 View Gene Set 0.001119 264 0.02985 94 Signal peptide prediction based on analysis of experimentally verified cleavage sites. www.ncbi.nlm.ni...
PMID 11504923 View Gene Set 0.001165 15 0.03042 95 HIV envelope gp120 activates human arterial smooth muscle cells. www.ncbi.nlm.ni...
PMID 19010793 View Gene Set 0.00116 78 0.03042 95 Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. www.ncbi.nlm.ni...
PMID 19489269 View Gene Set 0.001209 14 0.03125 97 [Genotype and haplotype analysis of killer cell immunoglobulin-like receptors in ankylosing spondylitis]. www.ncbi.nlm.ni...
PMID 10843712 View Gene Set 0.001296 25 0.03184 98 Release of calcium from inositol 1 4 5-trisphosphate receptor-regulated stores by HIV-1 Tat regulates TNF-alpha production in human macrophages. www.ncbi.nlm.ni...
PMID 18687225 View Gene Set 0.001285 13 0.03184 98 [Study on the polymorphism of killer cell immunoglobulin like receptor (KIR) gene with systemic lupus erythematosus of North population in China]. www.ncbi.nlm.ni...
PMID 19664392 View Gene Set 0.001285 11 0.03184 98 [Genotype analysis of killer cell immunoglobulin-like receptors in Graves' disease patients]. www.ncbi.nlm.ni...
PMID 19948975 View Gene Set 0.001246 229 0.03184 98 Integrative predictive model of coronary artery calcification in atherosclerosis. www.ncbi.nlm.ni...
PMID 20207982 View Gene Set 0.001293 15 0.03184 98 Natural killer-cell receptor polymorphisms and posttransplantation non-Hodgkin lymphoma. www.ncbi.nlm.ni...
PMID 16044242 View Gene Set 0.001324 11 0.03222 103 PAQR proteins: a novel membrane receptor family defined by an ancient 7-transmembrane pass motif. www.ncbi.nlm.ni...
PMID 20137308 View Gene Set 0.001449 12 0.03493 104 [Relationship between CMV reactivation and KIR haplotype/HLA-Cw genotype in patients after unrelated-donor hematopoietic stem cell transplantation.]. www.ncbi.nlm.ni...
PMID 11994280 View Gene Set 0.001524 22 0.03511 105 HIV-1-Tat protein activates phosphatidylinositol 3-kinase/ AKT-dependent survival pathways in Kaposi's sarcoma cells. www.ncbi.nlm.ni...
PMID 18945962 View Gene Set 0.001501 14 0.03511 105 Donors with group B KIR haplotypes improve relapse-free survival after unrelated hematopoietic cell transplantation for acute myelogenous leukemia. www.ncbi.nlm.ni...
PMID 19536175 View Gene Set 0.001524 76 0.03511 105 Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study. www.ncbi.nlm.ni...
PMID 19578796 View Gene Set 0.001527 152 0.03511 105 Association of genetic variants with chronic kidney disease in individuals with different lipid profiles. www.ncbi.nlm.ni...
PMID 19862010 View Gene Set 0.001485 55 0.03511 105 Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. www.ncbi.nlm.ni...
PMID 1602151 View Gene Set 0.001616 99 0.03684 110 Treatment of Haemophilus aphrophilus endocarditis with ciprofloxacin. www.ncbi.nlm.ni...
PMID 18830515 View Gene Set 0.001931 11 0.0436 111 Natural killer cells and immune surveillance. www.ncbi.nlm.ni...
PMID 10491200 View Gene Set 0.002051 10 0.04517 112 Effect of serine and tyrosine phosphorylation on retroviral proteinase substrates. www.ncbi.nlm.ni...
PMID 14684825 View Gene Set 0.002054 27 0.04517 112 Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 0.002039 58 0.04517 112 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS00154 View Gene Set 4.41e-05 37 0.009722 1 ATPASE_E1_E2 expasy.org/pros...
Null PS50011 View Gene Set 5.291e-05 493 0.009722 1 PROTEIN_KINASE_DOM expasy.org/pros...
Null PS50835 View Gene Set 2.521e-05 658 0.009722 1 IG_LIKE expasy.org/pros...
Null PS51285 View Gene Set 3.912e-05 55 0.009722 1 AGC_KINASE_CTER expasy.org/pros...
Null PS50002 View Gene Set 8.981e-05 212 0.0132 5 SH3 expasy.org/pros...
Null PS50003 View Gene Set 0.0001623 259 0.01988 6 PH_DOMAIN expasy.org/pros...
Null PS50004 View Gene Set 0.0003046 115 0.03198 7 C2 expasy.org/pros...
Null PS00455 View Gene Set 0.0004803 27 0.04413 8 AMP_BINDING expasy.org/pros...
Null PS00107 View Gene Set 0.0005475 384 0.04471 9 PROTEIN_KINASE_ATP expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:2.7.10.1 View Gene Set 0.0001536 38 0.02428 1 Receptor protein-tyrosine kinase expasy.org/enzy...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.EGFR View Gene Set 1.362e-05 38 0.0309 1 Protein-protein-interaction for EGFR www.ncbi.nlm.ni...
Null ppi.SYNJ1 View Gene Set 2.603e-05 13 0.0309 1 Protein-protein-interaction for SYNJ1 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EGFR1 View Gene Set 0.0031 137 0.031 1 CELL_MAP - EGFR1 gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null cholesterol biosynthesis II (via 24 25-dihydrolanosterol) View Gene Set 1.405e-06 13 0.0001217 1 HUMANCYC - cholesterol biosynthesis II (via 24 25-dihydrolanosterol) gene set www.pathwaycomm... 25-dihydrolanos...
Null cholesterol biosynthesis I View Gene Set 1.405e-06 13 0.0001217 1 HUMANCYC - cholesterol biosynthesis I gene set www.pathwaycomm...
Null cholesterol biosynthesis III (via desmosterol) View Gene Set 1.405e-06 13 0.0001217 1 HUMANCYC - cholesterol biosynthesis III (via desmosterol) gene set www.pathwaycomm...
Null superpathway of cholesterol biosynthesis View Gene Set 1.754e-05 25 0.00114 4 HUMANCYC - superpathway of cholesterol biosynthesis gene set www.pathwaycomm...
Null fatty acid beta-oxidation I View Gene Set 6.147e-05 19 0.003197 5 HUMANCYC - fatty acid beta-oxidation I gene set www.pathwaycomm...
Null cysteine biosynthesis III (mammalia) View Gene Set 0.0003638 8 0.01351 6 HUMANCYC - cysteine biosynthesis III (mammalia) gene set www.pathwaycomm...
Null 3-phosphoinositide biosynthesis View Gene Set 0.0003412 26 0.01351 6 HUMANCYC - 3-phosphoinositide biosynthesis gene set www.pathwaycomm...
Null superpathway of methionine degradation View Gene Set 0.0007975 17 0.02592 8 HUMANCYC - superpathway of methionine degradation gene set www.pathwaycomm...
Null methionine degradation I (to homocysteine) View Gene Set 0.001597 6 0.04614 9 HUMANCYC - methionine degradation I (to homocysteine) gene set www.pathwaycomm...
Null gamma-linolenate biosynthesis II (animals) View Gene Set 0.002281 7 0.04943 10 HUMANCYC - gamma-linolenate biosynthesis II (animals) gene set www.pathwaycomm...
Null zymosterol biosynthesis View Gene Set 0.002232 6 0.04943 10 HUMANCYC - zymosterol biosynthesis gene set www.pathwaycomm...
Null UDP-N-acetyl-D-glucosamine biosynthesis II View Gene Set 0.002246 5 0.04943 10 HUMANCYC - UDP-N-acetyl-D-glucosamine biosynthesis II gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Endothelins View Gene Set 6.506e-08 439 1.21e-05 1 NCI_NATURE - Endothelins gene set www.pathwaycomm...
Null Plasma membrane estrogen receptor signaling View Gene Set 1.51e-07 297 1.404e-05 2 NCI_NATURE - Plasma membrane estrogen receptor signaling gene set www.pathwaycomm...
Null IGF1 pathway View Gene Set 6.482e-07 271 2.148e-05 3 NCI_NATURE - IGF1 pathway gene set www.pathwaycomm...
Null Insulin Pathway View Gene Set 6.928e-07 263 2.148e-05 3 NCI_NATURE - Insulin Pathway gene set www.pathwaycomm...
Null Arf6 signaling events View Gene Set 6.928e-07 263 2.148e-05 3 NCI_NATURE - Arf6 signaling events gene set www.pathwaycomm...
Null Arf6 trafficking events View Gene Set 6.928e-07 263 2.148e-05 3 NCI_NATURE - Arf6 trafficking events gene set www.pathwaycomm...
Null LKB1 signaling events View Gene Set 8.914e-07 372 2.368e-05 7 NCI_NATURE - LKB1 signaling events gene set www.pathwaycomm...
Null IFN-gamma pathway View Gene Set 1.675e-06 590 3.894e-05 8 NCI_NATURE - IFN-gamma pathway gene set www.pathwaycomm...
Null EGFR-dependent Endothelin signaling events View Gene Set 6.323e-06 345 0.0001307 9 NCI_NATURE - EGFR-dependent Endothelin signaling events gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 1.272e-05 812 0.000182 10 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 1.272e-05 812 0.000182 10 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null mTOR signaling pathway View Gene Set 1.068e-05 343 0.000182 10 NCI_NATURE - mTOR signaling pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 1.272e-05 812 0.000182 10 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 1.869e-05 688 0.0002483 14 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 2.175e-05 841 0.0002697 15 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 4.995e-05 677 0.0005807 16 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...
Null EphrinB-EPHB pathway View Gene Set 6.438e-05 57 0.000671 17 NCI_NATURE - EphrinB-EPHB pathway gene set www.pathwaycomm...
Null Nectin adhesion pathway View Gene Set 6.569e-05 126 0.000671 17 NCI_NATURE - Nectin adhesion pathway gene set www.pathwaycomm...
Null Signaling events mediated by focal adhesion kinase View Gene Set 7.215e-05 660 0.000671 17 NCI_NATURE - Signaling events mediated by focal adhesion kinase gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 7.037e-05 686 0.000671 17 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null Ephrin B reverse signaling View Gene Set 7.848e-05 28 0.0006951 21 NCI_NATURE - Ephrin B reverse signaling gene set www.pathwaycomm...
Null Class I PI3K signaling events View Gene Set 8.532e-05 632 0.0007213 22 NCI_NATURE - Class I PI3K signaling events gene set www.pathwaycomm...
Null TNF receptor signaling pathway View Gene Set 9.993e-05 299 0.0008081 23 NCI_NATURE - TNF receptor signaling pathway gene set www.pathwaycomm...
Null Regulation of p38-alpha and p38-beta View Gene Set 0.0001075 164 0.0008165 24 NCI_NATURE - Regulation of p38-alpha and p38-beta gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 0.0001097 875 0.0008165 24 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 0.000144 796 0.000999 26 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null CXCR4-mediated signaling events View Gene Set 0.000145 192 0.000999 26 NCI_NATURE - CXCR4-mediated signaling events gene set www.pathwaycomm...
Null Thromboxane A2 receptor signaling View Gene Set 0.0002684 54 0.001783 28 NCI_NATURE - Thromboxane A2 receptor signaling gene set www.pathwaycomm...
Null Neurotrophic factor-mediated Trk receptor signaling View Gene Set 0.0003526 103 0.002262 29 NCI_NATURE - Neurotrophic factor-mediated Trk receptor signaling gene set www.pathwaycomm...
Null p38 MAPK signaling pathway View Gene Set 0.0005077 189 0.003148 30 NCI_NATURE - p38 MAPK signaling pathway gene set www.pathwaycomm...
Null IL1-mediated signaling events View Gene Set 0.0005917 234 0.00355 31 NCI_NATURE - IL1-mediated signaling events gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 0.0006367 937 0.003701 32 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...
Null Downstream signaling in na&#xef;ve CD8+ T cells View Gene Set 0.0006636 67 0.00374 33 NCI_NATURE - Downstream signaling in na&#xef;ve CD8+ T cells gene set www.pathwaycomm...
Null Nephrin/Neph1 signaling in the kidney podocyte View Gene Set 0.0008748 26 0.004786 34 NCI_NATURE - Nephrin/Neph1 signaling in the kidney podocyte gene set www.pathwaycomm...
Null p75(NTR)-mediated signaling View Gene Set 0.0009927 180 0.005276 35 NCI_NATURE - p75(NTR)-mediated signaling gene set www.pathwaycomm...
Null Signaling events mediated by VEGFR1 and VEGFR2 View Gene Set 0.001132 69 0.005847 36 NCI_NATURE - Signaling events mediated by VEGFR1 and VEGFR2 gene set www.pathwaycomm...
Null ALK1 pathway View Gene Set 0.001255 324 0.006144 37 NCI_NATURE - ALK1 pathway gene set www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt View Gene Set 0.001233 532 0.006144 37 NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set www.pathwaycomm...
Null E-cadherin signaling events View Gene Set 0.001394 73 0.006649 39 NCI_NATURE - E-cadherin signaling events gene set www.pathwaycomm...
Null ALK1 signaling events View Gene Set 0.001721 322 0.008002 40 NCI_NATURE - ALK1 signaling events gene set www.pathwaycomm...
Null S1P1 pathway View Gene Set 0.001782 71 0.008085 41 NCI_NATURE - S1P1 pathway gene set www.pathwaycomm...
Null IL2-mediated signaling events View Gene Set 0.00199 116 0.008814 42 NCI_NATURE - IL2-mediated signaling events gene set www.pathwaycomm...
Null Trk receptor signaling mediated by the MAPK pathway View Gene Set 0.002656 34 0.01149 43 NCI_NATURE - Trk receptor signaling mediated by the MAPK pathway gene set www.pathwaycomm...
Null BMP receptor signaling View Gene Set 0.002966 226 0.01254 44 NCI_NATURE - BMP receptor signaling gene set www.pathwaycomm...
Null EPHA forward signaling View Gene Set 0.003167 31 0.01309 45 NCI_NATURE - EPHA forward signaling gene set www.pathwaycomm...
Null TGF-beta receptor signaling View Gene Set 0.003769 306 0.0146 46 NCI_NATURE - TGF-beta receptor signaling gene set www.pathwaycomm...
Null Regulation of nuclear SMAD2/3 signaling View Gene Set 0.003769 306 0.0146 46 NCI_NATURE - Regulation of nuclear SMAD2/3 signaling gene set www.pathwaycomm...
Null Regulation of cytoplasmic and nuclear SMAD2/3 signaling View Gene Set 0.003769 306 0.0146 46 NCI_NATURE - Regulation of cytoplasmic and nuclear SMAD2/3 signaling gene set www.pathwaycomm...
Null Trk receptor signaling mediated by PI3K and PLC-gamma View Gene Set 0.003867 63 0.01468 49 NCI_NATURE - Trk receptor signaling mediated by PI3K and PLC-gamma gene set www.pathwaycomm...
Null Arf6 downstream pathway View Gene Set 0.004066 93 0.01486 50 NCI_NATURE - Arf6 downstream pathway gene set www.pathwaycomm...
Null Stabilization and expansion of the E-cadherin adherens junction View Gene Set 0.004175 67 0.01486 50 NCI_NATURE - Stabilization and expansion of the E-cadherin adherens junction gene set www.pathwaycomm...
Null E-cadherin signaling in the nascent adherens junction View Gene Set 0.004175 67 0.01486 50 NCI_NATURE - E-cadherin signaling in the nascent adherens junction gene set www.pathwaycomm...
Null N-cadherin signaling events View Gene Set 0.004235 36 0.01486 50 NCI_NATURE - N-cadherin signaling events gene set www.pathwaycomm...
Null Syndecan-2-mediated signaling events View Gene Set 0.004716 77 0.01625 54 NCI_NATURE - Syndecan-2-mediated signaling events gene set www.pathwaycomm...
Null Hedgehog signaling events mediated by Gli proteins View Gene Set 0.004851 48 0.01641 55 NCI_NATURE - Hedgehog signaling events mediated by Gli proteins gene set www.pathwaycomm...
Null TCR signaling in na&#xef;ve CD8+ T cells View Gene Set 0.004964 129 0.01649 56 NCI_NATURE - TCR signaling in na&#xef;ve CD8+ T cells gene set www.pathwaycomm...
Null IL12 signaling mediated by STAT4 View Gene Set 0.005834 31 0.01904 57 NCI_NATURE - IL12 signaling mediated by STAT4 gene set www.pathwaycomm...
Null Retinoic acid receptors-mediated signaling View Gene Set 0.006004 47 0.01925 58 NCI_NATURE - Retinoic acid receptors-mediated signaling gene set www.pathwaycomm...
Null IL6-mediated signaling events View Gene Set 0.006346 48 0.02 59 NCI_NATURE - IL6-mediated signaling events gene set www.pathwaycomm...
Null IL4-mediated signaling events View Gene Set 0.006485 62 0.0201 60 NCI_NATURE - IL4-mediated signaling events gene set www.pathwaycomm...
Null Signaling events mediated by the Hedgehog family View Gene Set 0.007551 65 0.02229 61 NCI_NATURE - Signaling events mediated by the Hedgehog family gene set www.pathwaycomm...
Null EPO signaling pathway View Gene Set 0.007528 34 0.02229 61 NCI_NATURE - EPO signaling pathway gene set www.pathwaycomm...
Null JNK signaling in the CD4+ TCR pathway View Gene Set 0.007344 42 0.02229 61 NCI_NATURE - JNK signaling in the CD4+ TCR pathway gene set www.pathwaycomm...
Null VEGFR1 specific signals View Gene Set 0.00797 30 0.02316 64 NCI_NATURE - VEGFR1 specific signals gene set www.pathwaycomm...
Null Signaling events mediated by Stem cell factor receptor (c-Kit) View Gene Set 0.008131 52 0.02327 65 NCI_NATURE - Signaling events mediated by Stem cell factor receptor (c-Kit) gene set www.pathwaycomm...
Null TCR signaling in na&#xef;ve CD4+ T cells View Gene Set 0.008359 135 0.02356 66 NCI_NATURE - TCR signaling in na&#xef;ve CD4+ T cells gene set www.pathwaycomm...
Null Insulin-mediated glucose transport View Gene Set 0.009353 29 0.02597 67 NCI_NATURE - Insulin-mediated glucose transport gene set www.pathwaycomm...
Null Regulation of Notch signaling View Gene Set 0.009526 37 0.02606 68 NCI_NATURE - Regulation of Notch signaling gene set www.pathwaycomm...
Null Sphingosine 1-phosphate (S1P) pathway View Gene Set 0.00983 138 0.0265 69 NCI_NATURE - Sphingosine 1-phosphate (S1P) pathway gene set www.pathwaycomm...
Null RAC1 signaling pathway View Gene Set 0.01097 194 0.02756 70 NCI_NATURE - RAC1 signaling pathway gene set www.pathwaycomm...
Null S1P4 pathway View Gene Set 0.01091 14 0.02756 70 NCI_NATURE - S1P4 pathway gene set www.pathwaycomm...
Null Regulation of RAC1 activity View Gene Set 0.01097 194 0.02756 70 NCI_NATURE - Regulation of RAC1 activity gene set www.pathwaycomm...
Null Regulation of RhoA activity View Gene Set 0.01097 194 0.02756 70 NCI_NATURE - Regulation of RhoA activity gene set www.pathwaycomm...
Null RhoA signaling pathway View Gene Set 0.01097 194 0.02756 70 NCI_NATURE - RhoA signaling pathway gene set www.pathwaycomm...
Null Cellular roles of Anthrax toxin View Gene Set 0.01149 22 0.02849 75 NCI_NATURE - Cellular roles of Anthrax toxin gene set www.pathwaycomm...
Null EphrinA-EPHA pathway View Gene Set 0.01172 43 0.02868 76 NCI_NATURE - EphrinA-EPHA pathway gene set www.pathwaycomm...
Null Regulation of CDC42 activity View Gene Set 0.01258 231 0.03039 77 NCI_NATURE - Regulation of CDC42 activity gene set www.pathwaycomm...
Null CDC42 signaling events View Gene Set 0.01322 219 0.03153 78 NCI_NATURE - CDC42 signaling events gene set www.pathwaycomm...
Null Ras signaling in the CD4+ TCR pathway View Gene Set 0.01468 42 0.03456 79 NCI_NATURE - Ras signaling in the CD4+ TCR pathway gene set www.pathwaycomm...
Null EPHB forward signaling View Gene Set 0.01521 40 0.03536 80 NCI_NATURE - EPHB forward signaling gene set www.pathwaycomm...
Null E-cadherin signaling in keratinocytes View Gene Set 0.01777 21 0.04072 81 NCI_NATURE - E-cadherin signaling in keratinocytes gene set www.pathwaycomm...
Null S1P5 pathway View Gene Set 0.01795 8 0.04072 81 NCI_NATURE - S1P5 pathway gene set www.pathwaycomm...
Null VEGFR3 signaling in lymphatic endothelium View Gene Set 0.01855 24 0.04158 83 NCI_NATURE - VEGFR3 signaling in lymphatic endothelium gene set www.pathwaycomm...
Null Calcium signaling in the CD4+ TCR pathway View Gene Set 0.02066 29 0.04575 84 NCI_NATURE - Calcium signaling in the CD4+ TCR pathway gene set www.pathwaycomm...
Null PDGFR-beta signaling pathway View Gene Set 0.02149 55 0.04702 85 NCI_NATURE - PDGFR-beta signaling pathway gene set www.pathwaycomm...
Null Role of Calcineurin-dependent NFAT signaling in lymphocytes View Gene Set 0.02245 95 0.04856 86 NCI_NATURE - Role of Calcineurin-dependent NFAT signaling in lymphocytes gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Transmembrane transport of small molecules View Gene Set 8.614e-09 367 9.622e-06 1 REACTOME - Transmembrane transport of small molecules gene set www.pathwaycomm...
Null Cholesterol biosynthesis View Gene Set 4.492e-08 20 2.509e-05 2 REACTOME - Cholesterol biosynthesis gene set www.pathwaycomm...
Null Formation of Platelet plug View Gene Set 8.681e-08 206 3.232e-05 3 REACTOME - Formation of Platelet plug gene set www.pathwaycomm...
Null Hemostasis View Gene Set 1.409e-07 394 3.934e-05 4 REACTOME - Hemostasis gene set www.pathwaycomm...
Null Platelet Activation View Gene Set 2.278e-07 164 5.089e-05 5 REACTOME - Platelet Activation gene set www.pathwaycomm...
Null Metabolism of lipids and lipoproteins View Gene Set 7.421e-07 252 0.0001382 6 REACTOME - Metabolism of lipids and lipoproteins gene set www.pathwaycomm...
Null Axon guidance View Gene Set 2.423e-06 225 0.0003867 7 REACTOME - Axon guidance gene set www.pathwaycomm...
Null Transferrin endocytosis and recycling View Gene Set 1.279e-05 27 0.001785 8 REACTOME - Transferrin endocytosis and recycling gene set www.pathwaycomm...
Null Ion transport by P-type ATPases View Gene Set 1.806e-05 29 0.002242 9 REACTOME - Ion transport by P-type ATPases gene set www.pathwaycomm...
Null Synaptic Transmission View Gene Set 2.274e-05 134 0.002309 10 REACTOME - Synaptic Transmission gene set www.pathwaycomm...
Null Signaling by GPCR View Gene Set 2.225e-05 802 0.002309 10 REACTOME - Signaling by GPCR gene set www.pathwaycomm...
Null Triglyceride Biosynthesis View Gene Set 2.567e-05 28 0.002389 12 REACTOME - Triglyceride Biosynthesis gene set www.pathwaycomm...
Null Transmission across Chemical Synapses View Gene Set 4.253e-05 129 0.003318 13 REACTOME - Transmission across Chemical Synapses gene set www.pathwaycomm...
Null Insulin receptor recycling View Gene Set 3.987e-05 25 0.003318 13 REACTOME - Insulin receptor recycling gene set www.pathwaycomm...
Null Iron uptake and transport View Gene Set 4.456e-05 37 0.003318 13 REACTOME - Iron uptake and transport gene set www.pathwaycomm...
Null Platelet activation triggers View Gene Set 4.857e-05 60 0.003391 16 REACTOME - Platelet activation triggers gene set www.pathwaycomm...
Null Signaling in Immune system View Gene Set 6.67e-05 404 0.004383 17 REACTOME - Signaling in Immune system gene set www.pathwaycomm...
Null GPCR downstream signaling View Gene Set 9.091e-05 595 0.005642 18 REACTOME - GPCR downstream signaling gene set www.pathwaycomm...
Null GPVI-mediated activation cascade View Gene Set 0.0001339 27 0.007871 19 REACTOME - GPVI-mediated activation cascade gene set www.pathwaycomm...
Null Post NMDA receptor activation events View Gene Set 0.0001832 34 0.008899 20 REACTOME - Post NMDA receptor activation events gene set www.pathwaycomm...
Null CREB phosphorylation through the activation of Ras View Gene Set 0.0001674 28 0.008899 20 REACTOME - CREB phosphorylation through the activation of Ras gene set www.pathwaycomm...
Null Activation of NMDA receptor upon glutamate binding and postsynaptic events View Gene Set 0.0001832 34 0.008899 20 REACTOME - Activation of NMDA receptor upon glutamate binding and postsynaptic events gene set www.pathwaycomm...
Null Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell View Gene Set 0.0001643 60 0.008899 20 REACTOME - Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell gene set www.pathwaycomm...
Null Ion channel transport View Gene Set 0.0002314 52 0.01077 24 REACTOME - Ion channel transport gene set www.pathwaycomm...
Null L1CAM interactions View Gene Set 0.0002624 83 0.01172 25 REACTOME - L1CAM interactions gene set www.pathwaycomm...
Null RSK activation View Gene Set 0.000278 7 0.01194 26 REACTOME - RSK activation gene set www.pathwaycomm...
Null Fatty Acyl-CoA Biosynthesis View Gene Set 0.0002937 18 0.01215 27 REACTOME - Fatty Acyl-CoA Biosynthesis gene set www.pathwaycomm...
Null ERK/MAPK targets View Gene Set 0.0003277 13 0.01262 28 REACTOME - ERK/MAPK targets gene set www.pathwaycomm...
Null NGF signalling via TRKA from the plasma membrane View Gene Set 0.0003238 110 0.01262 28 REACTOME - NGF signalling via TRKA from the plasma membrane gene set www.pathwaycomm...
Null Cell junction organization View Gene Set 0.0003401 80 0.01266 30 REACTOME - Cell junction organization gene set www.pathwaycomm...
Null Transport of inorganic cations/anions and amino acids/oligopeptides View Gene Set 0.0005369 94 0.01935 31 REACTOME - Transport of inorganic cations/anions and amino acids/oligopeptides gene set www.pathwaycomm...
Null Interferon gamma signaling View Gene Set 0.0006048 48 0.02047 32 REACTOME - Interferon gamma signaling gene set www.pathwaycomm...
Null Nuclear Events (kinase and transcription factor activation) View Gene Set 0.0005895 16 0.02047 32 REACTOME - Nuclear Events (kinase and transcription factor activation) gene set www.pathwaycomm...
Null G-protein mediated events View Gene Set 0.00067 40 0.02146 34 REACTOME - G-protein mediated events gene set www.pathwaycomm...
Null Recycling pathway of L1 View Gene Set 0.0006725 34 0.02146 34 REACTOME - Recycling pathway of L1 gene set www.pathwaycomm...
Null PLC beta mediated events View Gene Set 0.0007123 39 0.0221 36 REACTOME - PLC beta mediated events gene set www.pathwaycomm...
Null Fatty acid triacylglycerol and ketone body metabolism View Gene Set 0.0007496 83 0.02263 37 REACTOME - Fatty acid triacylglycerol and ketone body metabolism gene set www.pathwaycomm... triacylglycerol... and ketone body...
Null Interactions of the immunoglobulin superfamily (IgSF) member proteins View Gene Set 0.0008316 42 0.02445 38 REACTOME - Interactions of the immunoglobulin superfamily (IgSF) member proteins gene set www.pathwaycomm...
Null Neuroransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell View Gene Set 0.00104 95 0.02969 39 REACTOME - Neuroransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell gene set www.pathwaycomm...
Null Netrin-1 signaling View Gene Set 0.001063 46 0.02969 39 REACTOME - Netrin-1 signaling gene set www.pathwaycomm...
Null MAPK targets/ Nuclear events mediated by MAP kinases View Gene Set 0.001121 21 0.03055 41 REACTOME - MAPK targets/ Nuclear events mediated by MAP kinases gene set www.pathwaycomm...
Null Opioid Signalling View Gene Set 0.001219 53 0.03194 42 REACTOME - Opioid Signalling gene set www.pathwaycomm...
Null Semaphorin interactions View Gene Set 0.00123 64 0.03194 42 REACTOME - Semaphorin interactions gene set www.pathwaycomm...
Null PLC-gamma1 signalling View Gene Set 0.001322 31 0.03356 44 REACTOME - PLC-gamma1 signalling gene set www.pathwaycomm...
Null Ca-dependent events View Gene Set 0.001635 27 0.04057 45 REACTOME - Ca-dependent events gene set www.pathwaycomm...
Null Cell surface interactions at the vascular wall View Gene Set 0.001748 76 0.04155 46 REACTOME - Cell surface interactions at the vascular wall gene set www.pathwaycomm...
Null SLC-mediated transmembrane transport View Gene Set 0.001733 248 0.04155 46 REACTOME - SLC-mediated transmembrane transport gene set www.pathwaycomm...
Null Glucose metabolism View Gene Set 0.001816 37 0.04225 48 REACTOME - Glucose metabolism gene set www.pathwaycomm...
Null Signal transduction by L1 View Gene Set 0.001912 35 0.04358 49 REACTOME - Signal transduction by L1 gene set www.pathwaycomm...
Null Synthesis of very long-chain fatty acyl-CoAs View Gene Set 0.002036 14 0.04547 50 REACTOME - Synthesis of very long-chain fatty acyl-CoAs gene set www.pathwaycomm...
Null Synthesis of UDP-N-acetyl-glucosamine View Gene Set 0.002246 5 0.0492 51 REACTOME - Synthesis of UDP-N-acetyl-glucosamine gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-765 View Gene Set 2.532e-09 2575 1.714e-06 1 microRNA targets for hsa-miR-765 from miranda.targets www.mirbase.org...
Null hsa-miR-147 View Gene Set 1.266e-07 1140 2.251e-05 2 microRNA targets for hsa-miR-147 from miranda.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 1.33e-07 2301 2.251e-05 2 microRNA targets for hsa-miR-15a from miranda.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 8.89e-08 1222 2.251e-05 2 microRNA targets for hsa-miR-874 from miranda.targets www.mirbase.org...
Null hsa-miR-1253 View Gene Set 1.78e-07 1976 2.41e-05 5 microRNA targets for hsa-miR-1253 from miranda.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 2.358e-07 1386 2.66e-05 6 microRNA targets for hsa-miR-506 from miranda.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 3.749e-07 1494 3.536e-05 7 microRNA targets for hsa-miR-18b from miranda.targets www.mirbase.org...
Null hsa-miR-331-3p View Gene Set 4.179e-07 1191 3.536e-05 7 microRNA targets for hsa-miR-331-3p from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 6.244e-07 1844 4.697e-05 9 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 8.237e-07 1169 5.577e-05 10 microRNA targets for hsa-miR-142-3p from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 9.566e-07 1319 5.599e-05 11 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 9.925e-07 1682 5.599e-05 11 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-125a-3p View Gene Set 1.144e-06 1648 5.958e-05 13 microRNA targets for hsa-miR-125a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1206 View Gene Set 1.815e-06 1455 8.775e-05 14 microRNA targets for hsa-miR-1206 from miranda.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 2.258e-06 1494 0.0001019 15 microRNA targets for hsa-miR-18a from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 2.758e-06 2312 0.0001167 16 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 3.736e-06 1946 0.0001405 17 microRNA targets for hsa-miR-181a from miranda.targets www.mirbase.org...
Null hsa-miR-450b-3p View Gene Set 3.565e-06 987 0.0001405 17 microRNA targets for hsa-miR-450b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 4.148e-06 1949 0.0001478 19 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 4.494e-06 1786 0.0001521 20 microRNA targets for hsa-miR-519b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1277 View Gene Set 5.156e-06 688 0.0001662 21 microRNA targets for hsa-miR-1277 from miranda.targets www.mirbase.org...
Null hsa-miR-1266 View Gene Set 5.57e-06 2015 0.0001714 22 microRNA targets for hsa-miR-1266 from miranda.targets www.mirbase.org...
Null hsa-miR-432 View Gene Set 6.818e-06 1906 0.0001923 23 microRNA targets for hsa-miR-432 from miranda.targets www.mirbase.org...
Null hsa-miR-593 View Gene Set 6.655e-06 1337 0.0001923 23 microRNA targets for hsa-miR-593 from miranda.targets www.mirbase.org...
Null hsa-miR-1205 View Gene Set 7.59e-06 1762 0.0001976 25 microRNA targets for hsa-miR-1205 from miranda.targets www.mirbase.org...
Null hsa-miR-601 View Gene Set 7.312e-06 884 0.0001976 25 microRNA targets for hsa-miR-601 from miranda.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 8.583e-06 1837 0.0002152 27 microRNA targets for hsa-miR-519a from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 9.356e-06 1687 0.000221 28 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-199b-5p View Gene Set 9.465e-06 1567 0.000221 28 microRNA targets for hsa-miR-199b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-218 View Gene Set 9.974e-06 1341 0.0002251 30 microRNA targets for hsa-miR-218 from miranda.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 1.091e-05 1660 0.0002382 31 microRNA targets for hsa-miR-448 from miranda.targets www.mirbase.org...
Null hsa-miR-1294 View Gene Set 1.172e-05 1427 0.0002479 32 microRNA targets for hsa-miR-1294 from miranda.targets www.mirbase.org...
Null hsa-miR-574-5p View Gene Set 1.249e-05 1642 0.0002561 33 microRNA targets for hsa-miR-574-5p from miranda.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 1.313e-05 2253 0.0002615 34 microRNA targets for hsa-miR-15b from miranda.targets www.mirbase.org...
Null hsa-miR-204 View Gene Set 1.423e-05 1890 0.0002676 35 microRNA targets for hsa-miR-204 from miranda.targets www.mirbase.org...
Null hsa-miR-768-5p View Gene Set 1.413e-05 2575 0.0002676 35 microRNA targets for hsa-miR-768-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1246 View Gene Set 1.572e-05 1219 0.0002877 37 microRNA targets for hsa-miR-1246 from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 1.645e-05 2118 0.000293 38 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-298 View Gene Set 1.705e-05 2446 0.0002959 39 microRNA targets for hsa-miR-298 from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 1.756e-05 2900 0.0002972 40 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 1.956e-05 2011 0.0003229 41 microRNA targets for hsa-miR-519c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-33a View Gene Set 2.257e-05 1258 0.0003638 42 microRNA targets for hsa-miR-33a from miranda.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 2.485e-05 1693 0.0003683 43 microRNA targets for hsa-miR-149 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 2.502e-05 2212 0.0003683 43 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 2.419e-05 2219 0.0003683 43 microRNA targets for hsa-miR-195 from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 2.357e-05 2090 0.0003683 43 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-1300 View Gene Set 2.697e-05 1403 0.0003884 47 microRNA targets for hsa-miR-1300 from miranda.targets www.mirbase.org...
Null hsa-miR-33b View Gene Set 3.099e-05 1071 0.0004371 48 microRNA targets for hsa-miR-33b from miranda.targets www.mirbase.org...
Null hsa-miR-665 View Gene Set 3.484e-05 1901 0.0004814 49 microRNA targets for hsa-miR-665 from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 3.671e-05 2114 0.000497 50 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-490-5p View Gene Set 3.921e-05 830 0.0005204 51 microRNA targets for hsa-miR-490-5p from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 4.098e-05 2065 0.0005335 52 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-185 View Gene Set 4.284e-05 2402 0.0005472 53 microRNA targets for hsa-miR-185 from miranda.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 4.492e-05 1136 0.0005632 54 microRNA targets for hsa-miR-384 from miranda.targets www.mirbase.org...
Null hsa-miR-1197 View Gene Set 4.732e-05 1210 0.0005721 55 microRNA targets for hsa-miR-1197 from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 4.672e-05 2860 0.0005721 55 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 5.125e-05 2815 0.0006087 57 microRNA targets for hsa-miR-608 from miranda.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 5.281e-05 2159 0.0006164 58 microRNA targets for hsa-miR-9 from miranda.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 5.731e-05 1307 0.0006576 59 microRNA targets for hsa-miR-224 from miranda.targets www.mirbase.org...
Null hsa-miR-1233 View Gene Set 6.002e-05 824 0.0006595 60 microRNA targets for hsa-miR-1233 from miranda.targets www.mirbase.org...
Null hsa-miR-1298 View Gene Set 6.132e-05 406 0.0006595 60 microRNA targets for hsa-miR-1298 from miranda.targets www.mirbase.org...
Null hsa-miR-146b-3p View Gene Set 6.36e-05 1049 0.0006595 60 microRNA targets for hsa-miR-146b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-151-5p View Gene Set 6.187e-05 625 0.0006595 60 microRNA targets for hsa-miR-151-5p from miranda.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 6.429e-05 2258 0.0006595 60 microRNA targets for hsa-miR-16 from miranda.targets www.mirbase.org...
Null hsa-miR-296-5p View Gene Set 6.163e-05 887 0.0006595 60 microRNA targets for hsa-miR-296-5p from miranda.targets www.mirbase.org...
Null hsa-miR-938 View Gene Set 6.318e-05 580 0.0006595 60 microRNA targets for hsa-miR-938 from miranda.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 6.739e-05 1930 0.000681 67 microRNA targets for hsa-miR-182 from miranda.targets www.mirbase.org...
Null hsa-miR-103 View Gene Set 7.268e-05 1799 0.0006929 68 microRNA targets for hsa-miR-103 from miranda.targets www.mirbase.org...
Null hsa-miR-107 View Gene Set 7.268e-05 1799 0.0006929 68 microRNA targets for hsa-miR-107 from miranda.targets www.mirbase.org...
Null hsa-miR-1257 View Gene Set 7.184e-05 1202 0.0006929 68 microRNA targets for hsa-miR-1257 from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 7.436e-05 2246 0.0006929 68 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-769-3p View Gene Set 7.472e-05 1112 0.0006929 68 microRNA targets for hsa-miR-769-3p from miranda.targets www.mirbase.org...
Null hsa-miR-922 View Gene Set 7.013e-05 2129 0.0006929 68 microRNA targets for hsa-miR-922 from miranda.targets www.mirbase.org...
Null hsa-miR-616 View Gene Set 7.724e-05 1094 0.0007067 74 microRNA targets for hsa-miR-616 from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 8.102e-05 1804 0.0007313 75 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-642 View Gene Set 8.238e-05 1484 0.0007338 76 microRNA targets for hsa-miR-642 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.0001111 2173 0.0009508 77 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.0001111 2173 0.0009508 77 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-342-5p View Gene Set 0.0001138 861 0.0009508 77 microRNA targets for hsa-miR-342-5p from miranda.targets www.mirbase.org...
Null hsa-miR-34c-5p View Gene Set 0.0001108 1881 0.0009508 77 microRNA targets for hsa-miR-34c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-542-3p View Gene Set 0.0001131 1391 0.0009508 77 microRNA targets for hsa-miR-542-3p from miranda.targets www.mirbase.org...
Null hsa-miR-654-3p View Gene Set 0.0001189 1154 0.0009819 82 microRNA targets for hsa-miR-654-3p from miranda.targets www.mirbase.org...
Null hsa-miR-324-5p View Gene Set 0.0001246 869 0.001008 83 microRNA targets for hsa-miR-324-5p from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.000125 1802 0.001008 83 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-1308 View Gene Set 0.0001452 729 0.001157 85 microRNA targets for hsa-miR-1308 from miranda.targets www.mirbase.org...
Null hsa-miR-1299 View Gene Set 0.0001631 2168 0.001214 86 microRNA targets for hsa-miR-1299 from miranda.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.0001599 1331 0.001214 86 microRNA targets for hsa-miR-155 from miranda.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 0.0001614 1921 0.001214 86 microRNA targets for hsa-miR-486-3p from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.0001623 2072 0.001214 86 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 0.0001575 2745 0.001214 86 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-668 View Gene Set 0.0001546 719 0.001214 86 microRNA targets for hsa-miR-668 from miranda.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 0.0001687 1222 0.001242 92 microRNA targets for hsa-miR-139-5p from miranda.targets www.mirbase.org...
Null hsa-miR-196a View Gene Set 0.0001801 1412 0.001311 93 microRNA targets for hsa-miR-196a from miranda.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 0.0001842 1145 0.001327 94 microRNA targets for hsa-miR-125b from miranda.targets www.mirbase.org...
Null hsa-miR-1244 View Gene Set 0.0001952 2675 0.001335 95 microRNA targets for hsa-miR-1244 from miranda.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.0001937 2124 0.001335 95 microRNA targets for hsa-miR-330-3p from miranda.targets www.mirbase.org...
Null hsa-miR-423-5p View Gene Set 0.0001948 1898 0.001335 95 microRNA targets for hsa-miR-423-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.0001945 2983 0.001335 95 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.0001925 2077 0.001335 95 microRNA targets for hsa-miR-93 from miranda.targets www.mirbase.org...
Null hsa-miR-135a View Gene Set 0.0002163 2105 0.001436 100 microRNA targets for hsa-miR-135a from miranda.targets www.mirbase.org...
Null hsa-miR-199a-5p View Gene Set 0.0002157 1394 0.001436 100 microRNA targets for hsa-miR-199a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-296-3p View Gene Set 0.0002162 1695 0.001436 100 microRNA targets for hsa-miR-296-3p from miranda.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.0002485 1491 0.001603 103 microRNA targets for hsa-miR-148b from miranda.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 0.0002486 1605 0.001603 103 microRNA targets for hsa-miR-518a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-527 View Gene Set 0.0002486 1605 0.001603 103 microRNA targets for hsa-miR-527 from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.0002621 2025 0.001674 106 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-190b View Gene Set 0.0003082 1281 0.00195 107 microRNA targets for hsa-miR-190b from miranda.targets www.mirbase.org...
Null hsa-miR-1272 View Gene Set 0.000325 1955 0.002018 108 microRNA targets for hsa-miR-1272 from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.0003228 2909 0.002018 108 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-519e View Gene Set 0.000328 1108 0.002019 110 microRNA targets for hsa-miR-519e from miranda.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.0003312 1901 0.00202 111 microRNA targets for hsa-miR-520d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.0003482 1528 0.002105 112 microRNA targets for hsa-miR-370 from miranda.targets www.mirbase.org...
Null hsa-miR-1289 View Gene Set 0.0003585 1229 0.002148 113 microRNA targets for hsa-miR-1289 from miranda.targets www.mirbase.org...
Null hsa-miR-1248 View Gene Set 0.0003788 3013 0.002249 114 microRNA targets for hsa-miR-1248 from miranda.targets www.mirbase.org...
Null hsa-miR-1184 View Gene Set 0.0004061 1654 0.002312 115 microRNA targets for hsa-miR-1184 from miranda.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 0.0004009 1829 0.002312 115 microRNA targets for hsa-miR-488 from miranda.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 0.0003984 2421 0.002312 115 microRNA targets for hsa-miR-586 from miranda.targets www.mirbase.org...
Null hsa-miR-610 View Gene Set 0.0004038 853 0.002312 115 microRNA targets for hsa-miR-610 from miranda.targets www.mirbase.org...
Null hsa-miR-621 View Gene Set 0.0004065 615 0.002312 115 microRNA targets for hsa-miR-621 from miranda.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.0004099 1590 0.002312 120 microRNA targets for hsa-miR-520a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1179 View Gene Set 0.0004184 1381 0.002341 121 microRNA targets for hsa-miR-1179 from miranda.targets www.mirbase.org...
Null hsa-miR-211 View Gene Set 0.0004392 1917 0.002404 122 microRNA targets for hsa-miR-211 from miranda.targets www.mirbase.org...
Null hsa-miR-511 View Gene Set 0.0004362 2178 0.002404 122 microRNA targets for hsa-miR-511 from miranda.targets www.mirbase.org...
Null hsa-miR-520f View Gene Set 0.0004402 1654 0.002404 122 microRNA targets for hsa-miR-520f from miranda.targets www.mirbase.org...
Null hsa-miR-196b View Gene Set 0.0004656 1207 0.002521 125 microRNA targets for hsa-miR-196b from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 0.0004739 1933 0.002546 126 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-532-5p View Gene Set 0.0004866 1187 0.002594 127 microRNA targets for hsa-miR-532-5p from miranda.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.000506 2080 0.002676 128 microRNA targets for hsa-miR-497 from miranda.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 0.0005469 1700 0.00287 129 microRNA targets for hsa-miR-520b from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.0005696 2504 0.002966 130 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-let-7f View Gene Set 0.0005845 1584 0.003004 131 microRNA targets for hsa-let-7f from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.0005902 2295 0.003004 131 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-876-3p View Gene Set 0.000588 1305 0.003004 131 microRNA targets for hsa-miR-876-3p from miranda.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.0006138 1562 0.003055 134 microRNA targets for hsa-miR-24 from miranda.targets www.mirbase.org...
Null hsa-miR-508-5p View Gene Set 0.0006102 1429 0.003055 134 microRNA targets for hsa-miR-508-5p from miranda.targets www.mirbase.org...
Null hsa-miR-939 View Gene Set 0.0006058 2203 0.003055 134 microRNA targets for hsa-miR-939 from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.0006255 1861 0.003069 137 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-609 View Gene Set 0.0006226 825 0.003069 137 microRNA targets for hsa-miR-609 from miranda.targets www.mirbase.org...
Null hsa-miR-502-5p View Gene Set 0.0006319 1080 0.003078 139 microRNA targets for hsa-miR-502-5p from miranda.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 0.0006427 1840 0.003086 140 microRNA targets for hsa-miR-579 from miranda.targets www.mirbase.org...
Null hsa-miR-892a View Gene Set 0.0006422 1197 0.003086 140 microRNA targets for hsa-miR-892a from miranda.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.00065 1404 0.003099 142 microRNA targets for hsa-miR-29c from miranda.targets www.mirbase.org...
Null hsa-miR-128 View Gene Set 0.0006579 1465 0.003115 143 microRNA targets for hsa-miR-128 from miranda.targets www.mirbase.org...
Null hsa-miR-1296 View Gene Set 0.0006679 949 0.00314 144 microRNA targets for hsa-miR-1296 from miranda.targets www.mirbase.org...
Null hsa-miR-1207-3p View Gene Set 0.0006838 1414 0.003141 145 microRNA targets for hsa-miR-1207-3p from miranda.targets www.mirbase.org...
Null hsa-miR-328 View Gene Set 0.0006855 1308 0.003141 145 microRNA targets for hsa-miR-328 from miranda.targets www.mirbase.org...
Null hsa-miR-491-5p View Gene Set 0.0006867 1297 0.003141 145 microRNA targets for hsa-miR-491-5p from miranda.targets www.mirbase.org...
Null hsa-miR-623 View Gene Set 0.0006805 1227 0.003141 145 microRNA targets for hsa-miR-623 from miranda.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.0006965 1148 0.003165 149 microRNA targets for hsa-miR-153 from miranda.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 0.0007139 1357 0.003222 150 microRNA targets for hsa-miR-376b from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.0007306 2384 0.003276 151 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.0007378 1858 0.003286 152 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 0.0007438 2711 0.003291 153 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-32 View Gene Set 0.000757 1319 0.003328 154 microRNA targets for hsa-miR-32 from miranda.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 0.0008541 1773 0.003726 155 microRNA targets for hsa-miR-190 from miranda.targets www.mirbase.org...
Null hsa-miR-516b View Gene Set 0.0008634 1890 0.003726 155 microRNA targets for hsa-miR-516b from miranda.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.0008642 1842 0.003726 155 microRNA targets for hsa-miR-520c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.0008721 1644 0.003737 158 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.0009064 2122 0.003859 159 microRNA targets for hsa-miR-20b from miranda.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 0.0009316 1723 0.003919 160 microRNA targets for hsa-miR-27a from miranda.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 0.0009411 2046 0.003919 160 microRNA targets for hsa-miR-302c from miranda.targets www.mirbase.org...
Null hsa-miR-550 View Gene Set 0.0009435 1282 0.003919 160 microRNA targets for hsa-miR-550 from miranda.targets www.mirbase.org...
Null hsa-miR-583 View Gene Set 0.0009374 2115 0.003919 160 microRNA targets for hsa-miR-583 from miranda.targets www.mirbase.org...
Null hsa-miR-1254 View Gene Set 0.0009759 1726 0.00398 164 microRNA targets for hsa-miR-1254 from miranda.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 0.0009756 1307 0.00398 164 microRNA targets for hsa-miR-125a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-526b View Gene Set 0.000972 1677 0.00398 164 microRNA targets for hsa-miR-526b from miranda.targets www.mirbase.org...
Null hsa-miR-299-3p View Gene Set 0.0009847 1099 0.003992 167 microRNA targets for hsa-miR-299-3p from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.001025 2091 0.004129 168 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 0.001037 1277 0.004153 169 microRNA targets for hsa-miR-324-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1207-5p View Gene Set 0.001063 2608 0.004233 170 microRNA targets for hsa-miR-1207-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.001086 3270 0.0043 171 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 0.001105 1393 0.004351 172 microRNA targets for hsa-miR-873 from miranda.targets www.mirbase.org...
Null hsa-miR-27b View Gene Set 0.001117 1732 0.004372 173 microRNA targets for hsa-miR-27b from miranda.targets www.mirbase.org...
Null hsa-miR-485-5p View Gene Set 0.001141 1753 0.004427 174 microRNA targets for hsa-miR-485-5p from miranda.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 0.001144 2291 0.004427 174 microRNA targets for hsa-miR-637 from miranda.targets www.mirbase.org...
Null hsa-miR-202 View Gene Set 0.001195 855 0.004598 176 microRNA targets for hsa-miR-202 from miranda.targets www.mirbase.org...
Null hsa-miR-135b View Gene Set 0.00121 1979 0.004626 177 microRNA targets for hsa-miR-135b from miranda.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.001242 1343 0.004724 178 microRNA targets for hsa-miR-29a from miranda.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 0.001263 1183 0.004751 179 microRNA targets for hsa-miR-567 from miranda.targets www.mirbase.org...
Null hsa-miR-612 View Gene Set 0.001263 2298 0.004751 179 microRNA targets for hsa-miR-612 from miranda.targets www.mirbase.org...
Null hsa-miR-510 View Gene Set 0.001277 1405 0.004776 181 microRNA targets for hsa-miR-510 from miranda.targets www.mirbase.org...
Null hsa-miR-576-3p View Gene Set 0.001299 1704 0.004831 182 microRNA targets for hsa-miR-576-3p from miranda.targets www.mirbase.org...
Null hsa-miR-362-5p View Gene Set 0.001334 1341 0.004936 183 microRNA targets for hsa-miR-362-5p from miranda.targets www.mirbase.org...
Null hsa-miR-140-5p View Gene Set 0.001394 1363 0.005128 184 microRNA targets for hsa-miR-140-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1290 View Gene Set 0.001467 1539 0.005188 185 microRNA targets for hsa-miR-1290 from miranda.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.001476 1131 0.005188 185 microRNA targets for hsa-miR-219-2-3p from miranda.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.001472 1236 0.005188 185 microRNA targets for hsa-miR-361-5p from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.001431 1454 0.005188 185 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.001451 1199 0.005188 185 microRNA targets for hsa-miR-376a from miranda.targets www.mirbase.org...
Null hsa-miR-489 View Gene Set 0.001479 991 0.005188 185 microRNA targets for hsa-miR-489 from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.001419 1646 0.005188 185 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.001458 2308 0.005188 185 microRNA targets for hsa-miR-539 from miranda.targets www.mirbase.org...
Null hsa-miR-541 View Gene Set 0.001473 1275 0.005188 185 microRNA targets for hsa-miR-541 from miranda.targets www.mirbase.org...
Null hsa-miR-1321 View Gene Set 0.001508 1850 0.005264 194 microRNA targets for hsa-miR-1321 from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.001542 1877 0.005355 195 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 0.001563 2111 0.005399 196 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.001597 2681 0.005488 197 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-219-5p View Gene Set 0.001635 607 0.005589 198 microRNA targets for hsa-miR-219-5p from miranda.targets www.mirbase.org...
Null hsa-miR-136 View Gene Set 0.001645 2134 0.005595 199 microRNA targets for hsa-miR-136 from miranda.targets www.mirbase.org...
Null hsa-miR-663b View Gene Set 0.001692 871 0.005703 200 microRNA targets for hsa-miR-663b from miranda.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-129-3p View Gene Set 3.755e-05 171 0.02077 1 microRNA targets for hsa-miR-129-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 9.016e-05 308 0.02493 2 microRNA targets for hsa-miR-608 from mirtarget2.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-182 View Gene Set 5.865e-07 552 0.0001044 1 microRNA targets for hsa-miR-182 from pictar.targets www.mirbase.org...
Null hsa-miR-135a View Gene Set 2.199e-05 358 0.001305 2 microRNA targets for hsa-miR-135a from pictar.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 1.608e-05 595 0.001305 2 microRNA targets for hsa-miR-96 from pictar.targets www.mirbase.org...
Null hsa-miR-135b View Gene Set 6.502e-05 362 0.002893 4 microRNA targets for hsa-miR-135b from pictar.targets www.mirbase.org...
Null hsa-miR-219 View Gene Set 0.0001046 188 0.003723 5 microRNA targets for hsa-miR-219 from pictar.targets www.mirbase.org...
Null hsa-miR-218 View Gene Set 0.0001552 434 0.004603 6 microRNA targets for hsa-miR-218 from pictar.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.0002214 376 0.005227 7 microRNA targets for hsa-miR-153 from pictar.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.0002349 559 0.005227 7 microRNA targets for hsa-miR-29b from pictar.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.0003322 305 0.00657 9 microRNA targets for hsa-miR-24 from pictar.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.0004691 558 0.007591 10 microRNA targets for hsa-miR-29a from pictar.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.0004584 564 0.007591 10 microRNA targets for hsa-miR-29c from pictar.targets www.mirbase.org...
Null hsa-miR-17-5p View Gene Set 0.0007802 602 0.01157 12 microRNA targets for hsa-miR-17-5p from pictar.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.001282 601 0.01755 13 microRNA targets for hsa-miR-20b from pictar.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.001447 670 0.0184 14 microRNA targets for hsa-miR-9 from pictar.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 0.001927 306 0.02287 15 microRNA targets for hsa-miR-9* from pictar.targets www.mirbase.org...
Null hsa-miR-34a View Gene Set 0.002219 365 0.02469 16 microRNA targets for hsa-miR-34a from pictar.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 0.002952 133 0.0292 17 microRNA targets for hsa-miR-18a from pictar.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.00288 558 0.0292 17 microRNA targets for hsa-miR-19b from pictar.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.003257 613 0.03052 19 microRNA targets for hsa-miR-106b from pictar.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.003464 562 0.03083 20 microRNA targets for hsa-miR-19a from pictar.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 0.004371 130 0.03705 21 microRNA targets for hsa-miR-324-3p from pictar.targets www.mirbase.org...
Null hsa-miR-31 View Gene Set 0.00504 164 0.04078 22 microRNA targets for hsa-miR-31 from pictar.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 0.005696 324 0.04212 23 microRNA targets for hsa-miR-133a from pictar.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.00569 337 0.04212 23 microRNA targets for hsa-miR-133b from pictar.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 0.005916 134 0.04212 23 microRNA targets for hsa-miR-18b from pictar.targets www.mirbase.org...
Null hsa-miR-185 View Gene Set 0.006542 266 0.04479 26 microRNA targets for hsa-miR-185 from pictar.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.007446 611 0.04909 27 microRNA targets for hsa-miR-20a from pictar.targets www.mirbase.org...

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-124 View Gene Set 1.171e-08 1299 1.429e-06 1 microRNA targets for hsa-miR-124 from targetscan.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 1.171e-08 1299 1.429e-06 1 microRNA targets for hsa-miR-506 from targetscan.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 2.096e-08 841 1.705e-06 3 microRNA targets for hsa-miR-182 from targetscan.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-106a from targetscan.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-106b from targetscan.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-17 from targetscan.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-20a from targetscan.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-20b from targetscan.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-519d from targetscan.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 9.937e-08 986 2.425e-06 4 microRNA targets for hsa-miR-93 from targetscan.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 5.553e-07 936 1.232e-05 11 microRNA targets for hsa-miR-9 from targetscan.targets www.mirbase.org...
Null hsa-miR-1271 View Gene Set 9.297e-07 787 1.745e-05 12 microRNA targets for hsa-miR-1271 from targetscan.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 9.297e-07 787 1.745e-05 12 microRNA targets for hsa-miR-96 from targetscan.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 1.303e-06 439 2.272e-05 14 microRNA targets for hsa-miR-24 from targetscan.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 3.626e-06 549 5.549e-05 15 microRNA targets for hsa-miR-153 from targetscan.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 3.639e-06 522 5.549e-05 15 microRNA targets for hsa-miR-448 from targetscan.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 2.554e-05 921 0.0003462 17 microRNA targets for hsa-miR-27a from targetscan.targets www.mirbase.org...
Null hsa-miR-27b View Gene Set 2.554e-05 921 0.0003462 17 microRNA targets for hsa-miR-27b from targetscan.targets www.mirbase.org...
Null hsa-miR-128 View Gene Set 4.139e-05 785 0.0004591 19 microRNA targets for hsa-miR-128 from targetscan.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 4.003e-05 850 0.0004591 19 microRNA targets for hsa-miR-29a from targetscan.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 4.003e-05 850 0.0004591 19 microRNA targets for hsa-miR-29b from targetscan.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 4.003e-05 850 0.0004591 19 microRNA targets for hsa-miR-29c from targetscan.targets www.mirbase.org...
Null hsa-miR-485-5p View Gene Set 0.0001116 198 0.001184 23 microRNA targets for hsa-miR-485-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 0.0001844 1080 0.001607 24 microRNA targets for hsa-miR-30a from targetscan.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.0001844 1080 0.001607 24 microRNA targets for hsa-miR-30b from targetscan.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.0001844 1080 0.001607 24 microRNA targets for hsa-miR-30c from targetscan.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.0001844 1080 0.001607 24 microRNA targets for hsa-miR-30d from targetscan.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 0.0001844 1080 0.001607 24 microRNA targets for hsa-miR-30e from targetscan.targets www.mirbase.org...
Null hsa-miR-31 View Gene Set 0.0001944 233 0.001636 29 microRNA targets for hsa-miR-31 from targetscan.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.0007388 893 0.005302 30 microRNA targets for hsa-miR-181a from targetscan.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.0007388 893 0.005302 30 microRNA targets for hsa-miR-181b from targetscan.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.0007388 893 0.005302 30 microRNA targets for hsa-miR-181c from targetscan.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.0007388 893 0.005302 30 microRNA targets for hsa-miR-181d from targetscan.targets www.mirbase.org...
Null hsa-miR-219-5p View Gene Set 0.0007074 273 0.005302 30 microRNA targets for hsa-miR-219-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.0008999 646 0.005778 35 microRNA targets for hsa-miR-1297 from targetscan.targets www.mirbase.org...
Null hsa-miR-218 View Gene Set 0.0008336 699 0.005778 35 microRNA targets for hsa-miR-218 from targetscan.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0008999 646 0.005778 35 microRNA targets for hsa-miR-26a from targetscan.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0008999 646 0.005778 35 microRNA targets for hsa-miR-26b from targetscan.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 0.001246 604 0.007602 39 microRNA targets for hsa-miR-125a-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 0.001246 604 0.007602 39 microRNA targets for hsa-miR-125b from targetscan.targets www.mirbase.org...
Null hsa-miR-137 View Gene Set 0.001595 857 0.009494 41 microRNA targets for hsa-miR-137 from targetscan.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.002041 937 0.01158 42 microRNA targets for hsa-miR-19a from targetscan.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.002041 937 0.01158 42 microRNA targets for hsa-miR-19b from targetscan.targets www.mirbase.org...
Null hsa-miR-135a View Gene Set 0.002268 510 0.0123 44 microRNA targets for hsa-miR-135a from targetscan.targets www.mirbase.org...
Null hsa-miR-135b View Gene Set 0.002268 510 0.0123 44 microRNA targets for hsa-miR-135b from targetscan.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.002651 295 0.01406 46 microRNA targets for hsa-miR-183 from targetscan.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 0.00312 155 0.0162 47 microRNA targets for hsa-miR-335 from targetscan.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 0.0038 189 0.01892 48 microRNA targets for hsa-miR-18a from targetscan.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 0.0038 189 0.01892 48 microRNA targets for hsa-miR-18b from targetscan.targets www.mirbase.org...
Null hsa-miR-25 View Gene Set 0.004266 692 0.01892 50 microRNA targets for hsa-miR-25 from targetscan.targets www.mirbase.org...
Null hsa-miR-32 View Gene Set 0.004266 692 0.01892 50 microRNA targets for hsa-miR-32 from targetscan.targets www.mirbase.org...
Null hsa-miR-363 View Gene Set 0.004266 692 0.01892 50 microRNA targets for hsa-miR-363 from targetscan.targets www.mirbase.org...
Null hsa-miR-367 View Gene Set 0.004266 692 0.01892 50 microRNA targets for hsa-miR-367 from targetscan.targets www.mirbase.org...
Null hsa-miR-92a View Gene Set 0.004266 692 0.01892 50 microRNA targets for hsa-miR-92a from targetscan.targets www.mirbase.org...
Null hsa-miR-92b View Gene Set 0.004266 692 0.01892 50 microRNA targets for hsa-miR-92b from targetscan.targets www.mirbase.org...
Null hsa-miR-34a View Gene Set 0.005312 469 0.02197 56 microRNA targets for hsa-miR-34a from targetscan.targets www.mirbase.org...
Null hsa-miR-34c-5p View Gene Set 0.005312 469 0.02197 56 microRNA targets for hsa-miR-34c-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-449a View Gene Set 0.005312 469 0.02197 56 microRNA targets for hsa-miR-449a from targetscan.targets www.mirbase.org...
Null hsa-miR-449b View Gene Set 0.005312 469 0.02197 56 microRNA targets for hsa-miR-449b from targetscan.targets www.mirbase.org...
Null hsa-miR-33a View Gene Set 0.005527 264 0.02211 60 microRNA targets for hsa-miR-33a from targetscan.targets www.mirbase.org...
Null hsa-miR-33b View Gene Set 0.005527 264 0.02211 60 microRNA targets for hsa-miR-33b from targetscan.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.006232 722 0.02304 62 microRNA targets for hsa-miR-130a from targetscan.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.006232 722 0.02304 62 microRNA targets for hsa-miR-130b from targetscan.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 0.006232 722 0.02304 62 microRNA targets for hsa-miR-301a from targetscan.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.006232 722 0.02304 62 microRNA targets for hsa-miR-301b from targetscan.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.006232 722 0.02304 62 microRNA targets for hsa-miR-454 from targetscan.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 0.00769 202 0.02719 67 microRNA targets for hsa-miR-223 from targetscan.targets www.mirbase.org...
Null hsa-miR-551a View Gene Set 0.007632 5 0.02719 67 microRNA targets for hsa-miR-551a from targetscan.targets www.mirbase.org...
Null hsa-miR-551b View Gene Set 0.007632 5 0.02719 67 microRNA targets for hsa-miR-551b from targetscan.targets www.mirbase.org...
Null hsa-miR-140-5p View Gene Set 0.008209 251 0.02782 70 microRNA targets for hsa-miR-140-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 0.008176 420 0.02782 70 microRNA targets for hsa-miR-410 from targetscan.targets www.mirbase.org...
Null hsa-miR-874 View Gene Set 0.008174 152 0.02782 70 microRNA targets for hsa-miR-874 from targetscan.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.01062 536 0.0341 73 microRNA targets for hsa-miR-148a from targetscan.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.01062 536 0.0341 73 microRNA targets for hsa-miR-148b from targetscan.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 0.01062 536 0.0341 73 microRNA targets for hsa-miR-152 from targetscan.targets www.mirbase.org...
Null hsa-miR-202 View Gene Set 0.01032 597 0.0341 73 microRNA targets for hsa-miR-202 from targetscan.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 0.0118 283 0.03692 77 microRNA targets for hsa-miR-132 from targetscan.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.0118 283 0.03692 77 microRNA targets for hsa-miR-212 from targetscan.targets www.mirbase.org...
Null hsa-miR-126 View Gene Set 0.01239 17 0.03828 79 microRNA targets for hsa-miR-126 from targetscan.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.01258 346 0.03838 80 microRNA targets for hsa-miR-544 from targetscan.targets www.mirbase.org...
Null hsa-miR-103 View Gene Set 0.01535 472 0.04232 81 microRNA targets for hsa-miR-103 from targetscan.targets www.mirbase.org...
Null hsa-miR-107 View Gene Set 0.01535 472 0.04232 81 microRNA targets for hsa-miR-107 from targetscan.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.01562 265 0.04232 81 microRNA targets for hsa-miR-149 from targetscan.targets www.mirbase.org...
Null hsa-miR-185 View Gene Set 0.01544 176 0.04232 81 microRNA targets for hsa-miR-185 from targetscan.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.01612 209 0.04232 81 microRNA targets for hsa-miR-21 from targetscan.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.01623 838 0.04232 81 microRNA targets for hsa-miR-23a from targetscan.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.01623 838 0.04232 81 microRNA targets for hsa-miR-23b from targetscan.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-302a from targetscan.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-302b from targetscan.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-302c from targetscan.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-302d from targetscan.targets www.mirbase.org...
Null hsa-miR-302e View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-302e from targetscan.targets www.mirbase.org...
Null hsa-miR-326 View Gene Set 0.01656 275 0.04232 81 microRNA targets for hsa-miR-326 from targetscan.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 0.01656 275 0.04232 81 microRNA targets for hsa-miR-330-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-372 from targetscan.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-373 from targetscan.targets www.mirbase.org...
Null hsa-miR-450a View Gene Set 0.01502 3 0.04232 81 microRNA targets for hsa-miR-450a from targetscan.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-520a-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-520b from targetscan.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-520c-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-520d-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 0.01786 605 0.04232 81 microRNA targets for hsa-miR-520e from targetscan.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 0.01612 209 0.04232 81 microRNA targets for hsa-miR-590-5p from targetscan.targets www.mirbase.org...
Null hsa-let-7a View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7a from targetscan.targets www.mirbase.org...
Null hsa-let-7b View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7b from targetscan.targets www.mirbase.org...
Null hsa-let-7c View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7c from targetscan.targets www.mirbase.org...
Null hsa-let-7d View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7d from targetscan.targets www.mirbase.org...
Null hsa-let-7e View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7e from targetscan.targets www.mirbase.org...
Null hsa-let-7f View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7f from targetscan.targets www.mirbase.org...
Null hsa-let-7g View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7g from targetscan.targets www.mirbase.org...
Null hsa-let-7i View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-let-7i from targetscan.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 0.0195 216 0.04274 104 microRNA targets for hsa-miR-488 from targetscan.targets www.mirbase.org...
Null hsa-miR-98 View Gene Set 0.01979 820 0.04274 104 microRNA targets for hsa-miR-98 from targetscan.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.02285 539 0.04729 114 microRNA targets for hsa-miR-320a from targetscan.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.02285 539 0.04729 114 microRNA targets for hsa-miR-320b from targetscan.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.02285 539 0.04729 114 microRNA targets for hsa-miR-320c from targetscan.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.02285 539 0.04729 114 microRNA targets for hsa-miR-320d from targetscan.targets www.mirbase.org...
Null hsa-miR-455-5p View Gene Set 0.02287 135 0.04729 114 microRNA targets for hsa-miR-455-5p from targetscan.targets www.mirbase.org...

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 View Gene Set 2.149e-05 243 0.008827 1 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181b View Gene Set 1.554e-05 360 0.008827 1 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-182 View Gene Set 1.661e-05 193 0.008827 1 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-182 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 View Gene Set 1.234e-05 238 0.008827 1 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-153 View Gene Set 2.018e-05 39 0.008827 1 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-153 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-182 View Gene Set 2.913e-05 223 0.009372 6 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-182 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-96 View Gene Set 3.194e-05 196 0.009372 6 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-96 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181d View Gene Set 5.006e-05 357 0.01196 8 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181d from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-24 View Gene Set 5.239e-05 111 0.01196 8 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-24 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-335 View Gene Set 7.394e-05 22 0.01519 10 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-335 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106a View Gene Set 9.196e-05 389 0.01717 11 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-17 View Gene Set 0.0001113 384 0.01733 12 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-17 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181c View Gene Set 0.0001013 361 0.01733 12 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181c from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-335 View Gene Set 0.0001181 27 0.01733 12 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-335 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-182 View Gene Set 0.0001375 138 0.01883 15 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-182 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181a View Gene Set 0.0001684 350 0.02035 16 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-181a from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-153 View Gene Set 0.0001648 27 0.02035 16 microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-153 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20b View Gene Set 0.0002316 394 0.02503 18 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-448 View Gene Set 0.0002208 141 0.02503 18 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-448 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-335 View Gene Set 0.0003129 33 0.03214 20 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-335 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-183 View Gene Set 0.0003788 39 0.03357 21 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-183 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106b View Gene Set 0.0004413 372 0.03357 21 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-96 View Gene Set 0.000347 130 0.03357 21 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-96 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-106b View Gene Set 0.0004052 356 0.03357 21 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-106b from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-20a View Gene Set 0.0004231 363 0.03357 21 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-20a from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-29a View Gene Set 0.0004255 288 0.03357 21 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-29a from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-183 View Gene Set 0.0003999 38 0.03357 21 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-183 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20a View Gene Set 0.0004706 390 0.03411 28 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-93 View Gene Set 0.0004816 381 0.03411 28 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-93 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-33b View Gene Set 0.000507 21 0.03471 30 microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-33b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-96 View Gene Set 0.0005454 97 0.03613 31 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-96 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-29c View Gene Set 0.0005994 286 0.03848 32 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-29c from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-29b View Gene Set 0.0007967 287 0.04959 33 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-29b from miRNAtargetIntersection www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-765 View Gene Set 2.071e-08 3105 2.359e-05 1 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-765 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-130b View Gene Set 4.077e-08 2027 2.359e-05 1 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-142-3p View Gene Set 3.008e-08 1279 2.359e-05 1 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 3.784e-08 2450 2.359e-05 1 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-20b View Gene Set 5.396e-08 1139 2.497e-05 5 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-3p View Gene Set 8.878e-08 1283 3.424e-05 6 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-142-3p View Gene Set 2.008e-07 1299 4.224e-05 7 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-18b View Gene Set 1.765e-07 1614 4.224e-05 7 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-18b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-874 View Gene Set 1.707e-07 1362 4.224e-05 7 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-18b View Gene Set 1.964e-07 1581 4.224e-05 7 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-18b from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 1.62e-07 2020 4.224e-05 7 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130b View Gene Set 2.297e-07 1947 4.43e-05 12 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-15a View Gene Set 2.822e-07 2659 5.023e-05 13 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 3.32e-07 1208 5.488e-05 14 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-18b View Gene Set 3.741e-07 1606 5.771e-05 15 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-18b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-506 View Gene Set 4.376e-07 2120 6.329e-05 16 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-27b View Gene Set 4.888e-07 2221 6.654e-05 17 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-142-3p View Gene Set 6.219e-07 1792 7.196e-05 18 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-124 View Gene Set 5.987e-07 2056 7.196e-05 18 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-18a View Gene Set 5.65e-07 1583 7.196e-05 18 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-18a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-448 View Gene Set 7.22e-07 2294 7.411e-05 21 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-448 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-130a View Gene Set 7.366e-07 1862 7.411e-05 21 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-130a View Gene Set 7.126e-07 2029 7.411e-05 21 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-18a View Gene Set 8.722e-07 1612 7.547e-05 24 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-18a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-182 View Gene Set 8.806e-07 2467 7.547e-05 24 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-18a View Gene Set 8.52e-07 1619 7.547e-05 24 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-18a from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-27b View Gene Set 8.128e-07 2111 7.547e-05 24 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-142-3p View Gene Set 1.257e-06 1810 0.0001003 28 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-9 View Gene Set 1.252e-06 2656 0.0001003 28 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-182 View Gene Set 1.445e-06 2769 0.0001079 30 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-27a View Gene Set 1.433e-06 2209 0.0001079 30 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 View Gene Set 1.544e-06 1806 0.0001117 32 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20b View Gene Set 1.67e-06 1402 0.0001171 33 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130b View Gene Set 1.756e-06 1981 0.0001179 34 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 1.784e-06 2653 0.0001179 34 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-15a View Gene Set 2e-06 2702 0.000127 36 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 2.03e-06 574 0.000127 36 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-204 View Gene Set 2.092e-06 2428 0.0001274 38 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181c View Gene Set 2.268e-06 2350 0.0001306 39 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-218 View Gene Set 2.284e-06 1668 0.0001306 39 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-218 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-27a View Gene Set 2.314e-06 2103 0.0001306 39 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-3p View Gene Set 2.443e-06 1795 0.0001326 42 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-3p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-96 View Gene Set 2.464e-06 1037 0.0001326 42 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-96 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 View Gene Set 2.855e-06 1840 0.0001436 44 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-181c View Gene Set 2.836e-06 2200 0.0001436 44 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-96 View Gene Set 2.785e-06 1911 0.0001436 44 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-96 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p View Gene Set 3.021e-06 1764 0.0001444 47 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-204 View Gene Set 3.12e-06 2477 0.0001444 47 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-182 View Gene Set 3.019e-06 2337 0.0001444 47 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 3.116e-06 1448 0.0001444 47 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-665 View Gene Set 3.257e-06 2514 0.0001467 51 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-665 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 3.297e-06 2458 0.0001467 51 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-3p View Gene Set 3.596e-06 1778 0.000157 53 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-3p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-153 View Gene Set 4.2e-06 746 0.00018 54 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130a View Gene Set 4.467e-06 1949 0.0001879 55 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-182 View Gene Set 5.168e-06 2624 0.0002098 56 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181c View Gene Set 5.121e-06 2256 0.0002098 56 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-454 View Gene Set 5.342e-06 2229 0.0002131 58 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-24 View Gene Set 6.01e-06 1220 0.0002357 59 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 6.206e-06 2258 0.0002393 60 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-182 View Gene Set 6.617e-06 1579 0.000251 61 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-298 View Gene Set 7.032e-06 3039 0.0002625 62 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-298 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 View Gene Set 7.436e-06 3384 0.0002731 63 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-15a View Gene Set 8.516e-06 2600 0.0002776 64 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-106b View Gene Set 7.781e-06 2198 0.0002776 64 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-106b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-15b View Gene Set 8.51e-06 2623 0.0002776 64 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-15b from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-130a View Gene Set 8.369e-06 1901 0.0002776 64 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-106b View Gene Set 8.299e-06 1351 0.0002776 64 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-106b from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 8.318e-06 1260 0.0002776 64 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-20b View Gene Set 8.209e-06 1283 0.0002776 64 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 7.821e-06 571 0.0002776 64 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125b View Gene Set 8.653e-06 1512 0.0002781 72 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-153 View Gene Set 8.966e-06 1466 0.0002842 73 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-135a View Gene Set 1.039e-05 2316 0.0003184 74 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-135a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181a View Gene Set 1.128e-05 2345 0.0003184 74 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-185 View Gene Set 1.091e-05 2650 0.0003184 74 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-185 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-185 View Gene Set 1.126e-05 2594 0.0003184 74 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-185 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27b View Gene Set 1.126e-05 2255 0.0003184 74 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-448 View Gene Set 1.122e-05 2038 0.0003184 74 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-448 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-135a View Gene Set 1.065e-05 2336 0.0003184 74 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-135a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-195 View Gene Set 1.026e-05 2586 0.0003184 74 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-195 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-106a View Gene Set 1.111e-05 1271 0.0003184 74 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-155 View Gene Set 1.172e-05 1488 0.0003267 83 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-224 View Gene Set 1.306e-05 1520 0.0003597 84 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-224 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-149 View Gene Set 1.352e-05 2200 0.0003624 85 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130a View Gene Set 1.348e-05 1972 0.0003624 85 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-181a View Gene Set 1.363e-05 2301 0.0003624 85 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-204 View Gene Set 1.401e-05 2528 0.0003683 88 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-185 View Gene Set 1.422e-05 2549 0.0003698 89 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-185 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-181c View Gene Set 1.492e-05 2613 0.0003836 90 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-204 View Gene Set 1.617e-05 2141 0.0004112 91 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-24 View Gene Set 1.696e-05 692 0.0004265 92 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-185 View Gene Set 1.737e-05 2893 0.0004322 93 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-185 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-185 View Gene Set 1.763e-05 2840 0.0004341 94 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-185 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p View Gene Set 1.784e-05 2649 0.0004345 95 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-153 View Gene Set 1.848e-05 1457 0.0004431 96 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181a View Gene Set 1.865e-05 2438 0.0004431 96 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 1.876e-05 1909 0.0004431 96 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-148b View Gene Set 2.012e-05 2199 0.0004704 99 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-148b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-9 View Gene Set 2.037e-05 2572 0.0004714 100 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-218 View Gene Set 2.173e-05 1711 0.0004868 101 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-218 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301b View Gene Set 2.209e-05 2363 0.0004868 101 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-125b View Gene Set 2.158e-05 1547 0.0004868 101 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-16 View Gene Set 2.206e-05 2616 0.0004868 101 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-16 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 2.155e-05 1760 0.0004868 101 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-18b View Gene Set 2.232e-05 2045 0.0004873 106 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-18b from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-106a View Gene Set 2.321e-05 2496 0.000502 107 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181d View Gene Set 2.437e-05 2688 0.0005033 108 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-24 View Gene Set 2.436e-05 1845 0.0005033 108 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27a View Gene Set 2.431e-05 2242 0.0005033 108 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-24 View Gene Set 2.374e-05 1108 0.0005033 108 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-218 View Gene Set 2.458e-05 966 0.0005033 108 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-218 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-30d View Gene Set 2.445e-05 1434 0.0005033 108 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-182 View Gene Set 2.593e-05 1640 0.0005263 114 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-182 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-29c View Gene Set 2.626e-05 1748 0.0005283 115 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-29c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29c View Gene Set 2.689e-05 1819 0.0005319 116 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29c from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-20b View Gene Set 2.671e-05 2525 0.0005319 116 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-20b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-18b View Gene Set 2.774e-05 2038 0.0005404 118 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-18b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-218 View Gene Set 2.779e-05 1623 0.0005404 118 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-218 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-181a View Gene Set 2.83e-05 2602 0.0005458 120 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-15a View Gene Set 2.907e-05 2933 0.0005465 121 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-181c View Gene Set 2.929e-05 2502 0.0005465 121 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-324-5p View Gene Set 2.866e-05 1488 0.0005465 121 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-27b View Gene Set 2.952e-05 2604 0.0005465 121 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-135a View Gene Set 2.946e-05 2346 0.0005465 121 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-135a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-15b View Gene Set 3.287e-05 2666 0.0006036 126 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-15b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-185 View Gene Set 3.362e-05 2925 0.0006095 127 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-185 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p View Gene Set 3.47e-05 1519 0.0006095 127 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p View Gene Set 3.439e-05 2545 0.0006095 127 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181b View Gene Set 3.477e-05 2603 0.0006095 127 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301a View Gene Set 3.429e-05 2387 0.0006095 127 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-27b View Gene Set 3.443e-05 1097 0.0006095 127 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-149 View Gene Set 3.604e-05 2203 0.0006224 133 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-124 View Gene Set 3.586e-05 1965 0.0006224 133 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-485-5p View Gene Set 3.638e-05 2002 0.0006235 135 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-149 View Gene Set 3.789e-05 1859 0.0006447 136 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-5p View Gene Set 3.908e-05 1516 0.0006601 137 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-148b View Gene Set 4.051e-05 2141 0.0006792 138 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-148b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-33b View Gene Set 4.132e-05 1741 0.0006878 139 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-33b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-3p View Gene Set 4.207e-05 2295 0.000693 140 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-181a View Gene Set 4.223e-05 2715 0.000693 140 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-149 View Gene Set 4.302e-05 2201 0.000701 142 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-196a View Gene Set 4.444e-05 1497 0.0007192 143 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-196a from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-16 View Gene Set 4.492e-05 2605 0.0007218 144 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-16 from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-27a View Gene Set 4.759e-05 1087 0.0007595 145 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-24 View Gene Set 4.866e-05 2189 0.0007712 146 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125a-3p View Gene Set 4.931e-05 2343 0.0007762 147 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125a-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-488 View Gene Set 5.048e-05 2027 0.0007892 148 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-488 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-125b View Gene Set 5.301e-05 1428 0.0008123 149 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-153 View Gene Set 5.288e-05 1406 0.0008123 149 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-153 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-93 View Gene Set 5.247e-05 2566 0.0008123 149 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-93 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-181a View Gene Set 5.569e-05 2712 0.0008478 152 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-33a View Gene Set 5.735e-05 1453 0.0008674 153 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-33a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-155 View Gene Set 5.841e-05 1477 0.0008741 154 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-24 View Gene Set 5.855e-05 1215 0.0008741 154 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-93 View Gene Set 5.979e-05 2475 0.0008813 156 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-93 from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-29a View Gene Set 5.944e-05 1687 0.0008813 156 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-29a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-668 View Gene Set 6.082e-05 1225 0.0008823 158 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-668 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 View Gene Set 6.148e-05 2729 0.0008823 158 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-135a View Gene Set 6.188e-05 2717 0.0008823 158 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-135a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-130a View Gene Set 6.14e-05 1799 0.0008823 158 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29a View Gene Set 6.291e-05 1758 0.0008823 158 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-29a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-107 View Gene Set 6.089e-05 2153 0.0008823 158 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-107 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-27b View Gene Set 6.233e-05 1993 0.0008823 158 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-181b View Gene Set 6.265e-05 2464 0.0008823 158 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-15a View Gene Set 6.356e-05 3046 0.000886 166 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p View Gene Set 6.461e-05 1675 0.0008953 167 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20a View Gene Set 6.583e-05 1350 0.0009067 168 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-20a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-199b-5p View Gene Set 7.009e-05 1789 0.0009596 169 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-199b-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-18a View Gene Set 7.243e-05 2083 0.0009805 170 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-18a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-196b View Gene Set 7.245e-05 1291 0.0009805 170 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-196b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-149 View Gene Set 7.616e-05 1883 0.001014 172 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-195 View Gene Set 7.609e-05 2502 0.001014 172 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-195 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-29c View Gene Set 7.621e-05 1803 0.001014 172 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-29c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181b View Gene Set 7.668e-05 2510 0.001014 175 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-135b View Gene Set 7.728e-05 2194 0.001016 176 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-135b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-155 View Gene Set 7.782e-05 1940 0.001017 177 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-768-5p View Gene Set 7.938e-05 3139 0.001022 178 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-768-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-15a View Gene Set 7.954e-05 2939 0.001022 178 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-15a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-24 View Gene Set 7.943e-05 1840 0.001022 178 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-32 View Gene Set 8.031e-05 1658 0.001027 181 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-32 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-124 View Gene Set 8.32e-05 1943 0.001051 182 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-124 View Gene Set 8.267e-05 1518 0.001051 182 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-155 View Gene Set 8.355e-05 1473 0.001051 182 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-155 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-195 View Gene Set 8.674e-05 2605 0.001085 185 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-195 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-324-5p View Gene Set 8.834e-05 1517 0.001099 186 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125b View Gene Set 8.986e-05 2046 0.001112 187 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-135b View Gene Set 9.088e-05 2216 0.001119 188 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-135b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-218 View Gene Set 9.634e-05 1967 0.00118 189 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-218 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-27a View Gene Set 9.692e-05 1979 0.00118 190 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-96 View Gene Set 9.756e-05 1843 0.001182 191 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-96 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-922 View Gene Set 9.958e-05 2731 0.0012 192 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-922 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-24 View Gene Set 0.0001013 2222 0.001214 193 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-24 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-506 View Gene Set 0.0001026 2522 0.001218 194 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-106b View Gene Set 0.0001023 2280 0.001218 194 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-106b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-204 View Gene Set 0.0001039 2205 0.001227 196 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-204 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-33b View Gene Set 0.0001045 1676 0.001227 197 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-33b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-15b View Gene Set 0.0001068 2563 0.001248 198 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-15b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-103 View Gene Set 0.000108 2600 0.001256 199 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-103 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-454 View Gene Set 0.0001086 2596 0.001257 200 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: hprdBatch.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 9.04e-07 437 1.808e-05 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null IL-4 Signaling Pathway View Gene Set 1.642e-05 217 0.0001642 2 From NetPath for IL-4 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 0.0005767 792 0.003845 3 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 0.001242 130 0.006208 4 From NetPath for IL-5 Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 0.003453 154 0.01381 5 From NetPath for IL-1 Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 0.00665 80 0.02217 6 From NetPath for IL-6 Signaling Pathway www.netpath.org...
Null IL-3 Signaling Pathway View Gene Set 0.008992 40 0.02569 7 From NetPath for IL-3 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL-2 Signaling Pathway View Gene Set 7.661e-08 291 1.456e-06 1 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null Androgen Receptor Signaling Pathway View Gene Set 4.038e-06 161 3.836e-05 2 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 0.001725 739 0.01092 3 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.003397 98 0.01614 4 From NetPath for EGFR1 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 1.484e-10 586 2.968e-09 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null IL-4 Signaling Pathway View Gene Set 1.069e-06 301 1.069e-05 2 From NetPath for IL-4 Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 5.591e-06 685 3.727e-05 3 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 2.03e-05 1296 0.0001015 4 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.0007434 253 0.002974 5 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 0.001063 105 0.003545 6 From NetPath for IL-6 Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 0.001746 139 0.004987 7 From NetPath for IL-5 Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 0.008096 233 0.02024 8 From NetPath for IL-1 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 2.26e-06 212 5.425e-05 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null TSH View Gene Set 4.771e-05 48 0.0005725 2 From NetPath for TSH www.netpath.org...
Null IL4 View Gene Set 0.0002167 199 0.001734 3 From NetPath for IL4 www.netpath.org...
Null Wnt View Gene Set 0.000748 36 0.004488 4 From NetPath for Wnt www.netpath.org...
Null TNFalpha View Gene Set 0.00102 113 0.004895 5 From NetPath for TNFalpha www.netpath.org...
Null FSH View Gene Set 0.001535 164 0.006078 6 From NetPath for FSH www.netpath.org...
Null IL1 View Gene Set 0.002026 85 0.006078 6 From NetPath for IL1 www.netpath.org...
Null IL5 View Gene Set 0.001853 136 0.006078 6 From NetPath for IL5 www.netpath.org...
Null Hedgehog View Gene Set 0.01314 3 0.03504 9 From NetPath for Hedgehog www.netpath.org...

Gene Set Collection: hprdManual.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL2 View Gene Set 1.41e-07 297 2.679e-06 1 From NetPath for IL2 www.netpath.org...
Null TGF_beta_Receptor View Gene Set 4.939e-05 399 0.0004692 2 From NetPath for TGF_beta_Receptor www.netpath.org...
Null FSH View Gene Set 0.0002903 99 0.001838 3 From NetPath for FSH www.netpath.org...
Null TCR View Gene Set 0.003733 178 0.01773 4 From NetPath for TCR www.netpath.org...

Gene Set Collection: hprdManual.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 6.415e-09 594 1.54e-07 1 From NetPath for TGF_beta_Receptor www.netpath.org...
Null FSH View Gene Set 3.74e-06 263 4.488e-05 2 From NetPath for FSH www.netpath.org...
Null IL4 View Gene Set 6.801e-06 269 5.441e-05 3 From NetPath for IL4 www.netpath.org...
Null IL2 View Gene Set 9.958e-06 796 5.975e-05 4 From NetPath for IL2 www.netpath.org...
Null TSH View Gene Set 2.423e-05 90 0.0001163 5 From NetPath for TSH www.netpath.org...
Null TNFalpha View Gene Set 0.001315 121 0.00526 6 From NetPath for TNFalpha www.netpath.org...
Null IL5 View Gene Set 0.002164 144 0.006648 7 From NetPath for IL5 www.netpath.org...
Null Wnt View Gene Set 0.002216 45 0.006648 7 From NetPath for Wnt www.netpath.org...
Null IL1 View Gene Set 0.00657 120 0.01752 9 From NetPath for IL1 www.netpath.org...
Null Hedgehog View Gene Set 0.01314 3 0.03154 10 From NetPath for Hedgehog www.netpath.org...

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null V_FREAC2_01 View Gene Set 1.404e-06 227 0.000182 1 List of genes containing a conserved (FDR < 0.1%) V$FREAC2_01 TFBS located within 3 kb around the TSS for the FOXF2 transcription factor www.gene-regula...
Null V_RFX1_02 View Gene Set 1.709e-06 364 0.000182 1 List of genes containing a conserved (FDR < 0.1%) V$RFX1_02 TFBS located within 3 kb around the TSS for the RFX1 transcription factor www.gene-regula...
Null V_NKX25_02 View Gene Set 6.959e-06 252 0.0004941 3 List of genes containing a conserved (FDR < 0.1%) V$NKX25_02 TFBS located within 3 kb around the TSS for the Nkx2-5 transcription factor www.gene-regula...
Null V_RSRFC4_01 View Gene Set 1.185e-05 394 0.0006312 4 List of genes containing a conserved (FDR < 0.1%) V$RSRFC4_01 TFBS located within 3 kb around the TSS for the RSRFC4 transcription factor www.gene-regula...
Null V_FOXO1_02 View Gene Set 2.297e-05 273 0.0008155 5 List of genes containing a conserved (FDR < 0.1%) V$FOXO1_02 TFBS located within 3 kb around the TSS for the FOXO1a transcription factor www.gene-regula...
Null V_MEIS1AHOXA9_01 View Gene Set 2.048e-05 263 0.0008155 5 List of genes containing a conserved (FDR < 0.1%) V$MEIS1AHOXA9_01 TFBS located within 3 kb around the TSS for the HOXA9B transcription factor www.gene-regula...
Null V_CEBPA_01 View Gene Set 0.0001361 45 0.004042 7 List of genes containing a conserved (FDR < 0.1%) V$CEBPA_01 TFBS located within 3 kb around the TSS for the C/EBPalpha transcription factor www.gene-regula...
Null V_OCT_C View Gene Set 0.0001518 316 0.004042 7 List of genes containing a conserved (FDR < 0.1%) V$OCT_C TFBS located within 3 kb around the TSS for the Oct-B1 transcription factor www.gene-regula...
Null V_AP1_01 View Gene Set 0.0002067 169 0.004471 9 List of genes containing a conserved (FDR < 0.1%) V$AP1_01 TFBS located within 3 kb around the TSS for the AP-1 transcription factor www.gene-regula...
Null V_PBX1_02 View Gene Set 0.0002099 223 0.004471 9 List of genes containing a conserved (FDR < 0.1%) V$PBX1_02 TFBS located within 3 kb around the TSS for the Pbx1a transcription factor www.gene-regula...
Null V_FOXO4_02 View Gene Set 0.0002961 244 0.005734 11 List of genes containing a conserved (FDR < 0.1%) V$FOXO4_02 TFBS located within 3 kb around the TSS for the FOXO4 transcription factor www.gene-regula...
Null V_BACH1_01 View Gene Set 0.0003443 306 0.006112 12 List of genes containing a conserved (FDR < 0.1%) V$BACH1_01 TFBS located within 3 kb around the TSS for the Bach1 transcription factor www.gene-regula...
Null V_OCT1_07 View Gene Set 0.000548 213 0.007781 13 List of genes containing a conserved (FDR < 0.1%) V$OCT1_07 TFBS located within 3 kb around the TSS for the POU2F1 transcription factor www.gene-regula...
Null V_SOX9_B1 View Gene Set 0.0004763 135 0.007781 13 List of genes containing a conserved (FDR < 0.1%) V$SOX9_B1 TFBS located within 3 kb around the TSS for the Sox9 transcription factor www.gene-regula...
Null V_ZIC1_01 View Gene Set 0.0005232 99 0.007781 13 List of genes containing a conserved (FDR < 0.1%) V$ZIC1_01 TFBS located within 3 kb around the TSS for the Zic1 transcription factor www.gene-regula...
Null V_OCT1_04 View Gene Set 0.0006087 82 0.008104 16 List of genes containing a conserved (FDR < 0.1%) V$OCT1_04 TFBS located within 3 kb around the TSS for the POU2F1 transcription factor www.gene-regula...
Null V_HTF_01 View Gene Set 0.0007102 183 0.008899 17 List of genes containing a conserved (FDR < 0.1%) V$HTF_01 TFBS located within 3 kb around the TSS for the HTF transcription factor www.gene-regula...
Null V_MEF2_02 View Gene Set 0.0008801 157 0.01042 18 List of genes containing a conserved (FDR < 0.1%) V$MEF2_02 TFBS located within 3 kb around the TSS for the MEF-2A transcription factor www.gene-regula...
Null V_NFKB_C View Gene Set 0.001169 143 0.0131 19 List of genes containing a conserved (FDR < 0.1%) V$NFKB_C TFBS located within 3 kb around the TSS for the NF-kappaB transcription factor www.gene-regula...
Null V_FOXO3_01 View Gene Set 0.001272 232 0.01355 20 List of genes containing a conserved (FDR < 0.1%) V$FOXO3_01 TFBS located within 3 kb around the TSS for the FOXO3a transcription factor www.gene-regula...
Null V_RORA1_01 View Gene Set 0.001337 133 0.01356 21 List of genes containing a conserved (FDR < 0.1%) V$RORA1_01 TFBS located within 3 kb around the TSS for the RORalpha1 transcription factor www.gene-regula...
Null V_FOXJ2_01 View Gene Set 0.001569 51 0.01519 22 List of genes containing a conserved (FDR < 0.1%) V$FOXJ2_01 TFBS located within 3 kb around the TSS for the FOXJ2 (long isoform) transcription factor www.gene-regula...
Null V_FOXJ2_02 View Gene Set 0.001746 257 0.01617 23 List of genes containing a conserved (FDR < 0.1%) V$FOXJ2_02 TFBS located within 3 kb around the TSS for the FOXJ2 (long isoform) transcription factor www.gene-regula...
Null V_FREAC4_01 View Gene Set 0.002181 281 0.01936 24 List of genes containing a conserved (FDR < 0.1%) V$FREAC4_01 TFBS located within 3 kb around the TSS for the FOXD1 transcription factor www.gene-regula...
Null V_PAX6_01 View Gene Set 0.003115 245 0.02577 25 List of genes containing a conserved (FDR < 0.1%) V$PAX6_01 TFBS located within 3 kb around the TSS for the Pax-6 transcription factor www.gene-regula...
Null V_SRY_02 View Gene Set 0.003145 65 0.02577 25 List of genes containing a conserved (FDR < 0.1%) V$SRY_02 TFBS located within 3 kb around the TSS for the SRY transcription factor www.gene-regula...
Null V_HFH1_01 View Gene Set 0.003392 174 0.0258 27 List of genes containing a conserved (FDR < 0.1%) V$HFH1_01 TFBS located within 3 kb around the TSS for the HFH-1 transcription factor www.gene-regula...
Null V_POU3F2_02 View Gene Set 0.003391 261 0.0258 27 List of genes containing a conserved (FDR < 0.1%) V$POU3F2_02 TFBS located within 3 kb around the TSS for the POU3F2 transcription factor www.gene-regula...
Null V_HAND1E47_01 View Gene Set 0.004013 82 0.02831 29 List of genes containing a conserved (FDR < 0.1%) V$HAND1E47_01 TFBS located within 3 kb around the TSS for the E47 transcription factor www.gene-regula...
Null V_NF1_Q6 View Gene Set 0.00412 10 0.02831 29 List of genes containing a conserved (FDR < 0.1%) V$NF1_Q6 TFBS located within 3 kb around the TSS for the NF-1 transcription factor www.gene-regula...
Null V_TGIF_01 View Gene Set 0.004045 92 0.02831 29 List of genes containing a conserved (FDR < 0.1%) V$TGIF_01 TFBS located within 3 kb around the TSS for the TGIF transcription factor www.gene-regula...
Null V_POU6F1_01 View Gene Set 0.004607 200 0.03066 32 List of genes containing a conserved (FDR < 0.1%) V$POU6F1_01 TFBS located within 3 kb around the TSS for the POU6F1 (c2) transcription factor www.gene-regula...
Null V_PPARG_02 View Gene Set 0.004998 151 0.03226 33 List of genes containing a conserved (FDR < 0.1%) V$PPARG_02 TFBS located within 3 kb around the TSS for the PPAR-gamma1 transcription factor www.gene-regula...
Null V_PAX3_01 View Gene Set 0.005211 161 0.03265 34 List of genes containing a conserved (FDR < 0.1%) V$PAX3_01 TFBS located within 3 kb around the TSS for the Pax-3 transcription factor www.gene-regula...
Null V_HOXA3_01 View Gene Set 0.005627 81 0.03424 35 List of genes containing a conserved (FDR < 0.1%) V$HOXA3_01 TFBS located within 3 kb around the TSS for the HOXA3 transcription factor www.gene-regula...
Null V_CDPCR1_01 View Gene Set 0.005918 160 0.03502 36 List of genes containing a conserved (FDR < 0.1%) V$CDPCR1_01 TFBS located within 3 kb around the TSS for the CUTL1 transcription factor www.gene-regula...
Null V_MYOD_01 View Gene Set 0.006649 43 0.03583 37 List of genes containing a conserved (FDR < 0.1%) V$MYOD_01 TFBS located within 3 kb around the TSS for the MyoD transcription factor www.gene-regula...
Null V_NFE2_01 View Gene Set 0.006656 213 0.03583 37 List of genes containing a conserved (FDR < 0.1%) V$NFE2_01 TFBS located within 3 kb around the TSS for the NF-E2 transcription factor www.gene-regula...
Null V_OCT1_02 View Gene Set 0.006705 216 0.03583 37 List of genes containing a conserved (FDR < 0.1%) V$OCT1_02 TFBS located within 3 kb around the TSS for the POU2F1 transcription factor www.gene-regula...
Null V_ZIC3_01 View Gene Set 0.006729 82 0.03583 37 List of genes containing a conserved (FDR < 0.1%) V$ZIC3_01 TFBS located within 3 kb around the TSS for the Zic3 transcription factor www.gene-regula...
Null V_GATA_C View Gene Set 0.007024 183 0.03649 41 List of genes containing a conserved (FDR < 0.1%) V$GATA_C TFBS located within 3 kb around the TSS for the GATA-1 transcription factor www.gene-regula...
Null V_FREAC3_01 View Gene Set 0.007702 272 0.03906 42 List of genes containing a conserved (FDR < 0.1%) V$FREAC3_01 TFBS located within 3 kb around the TSS for the FOXC1 transcription factor www.gene-regula...
Null V_EVI1_03 View Gene Set 0.008284 149 0.04104 43 List of genes containing a conserved (FDR < 0.1%) V$EVI1_03 TFBS located within 3 kb around the TSS for the Evi-1 transcription factor www.gene-regula...
Null V_STAT5B_01 View Gene Set 0.008707 50 0.04215 44 List of genes containing a conserved (FDR < 0.1%) V$STAT5B_01 TFBS located within 3 kb around the TSS for the STAT5B transcription factor www.gene-regula...
Null V_HNF1_01 View Gene Set 0.009154 185 0.04239 45 List of genes containing a conserved (FDR < 0.1%) V$HNF1_01 TFBS located within 3 kb around the TSS for the HNF-1A transcription factor www.gene-regula...
Null V_HNF3B_01 View Gene Set 0.009015 168 0.04239 45 List of genes containing a conserved (FDR < 0.1%) V$HNF3B_01 TFBS located within 3 kb around the TSS for the HNF-3beta transcription factor www.gene-regula...
Null V_MEF2_01 View Gene Set 0.01026 385 0.04651 47 List of genes containing a conserved (FDR < 0.1%) V$MEF2_01 TFBS located within 3 kb around the TSS for the MEF-2A transcription factor www.gene-regula...