Results

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Go to: Gene Set Collection: miranda.targets
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Go to: Gene Set Collection: tfbsK3Z3

AFA results for: miR.206vsControl.ls

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04110 View Gene Set 4.784e-13 128 1.024e-10 1 Cell cycle www.genome.jp/d...
KEGG 03030 View Gene Set 1.942e-10 36 2.078e-08 2 DNA replication www.genome.jp/d...
KEGG 04120 View Gene Set 8.728e-06 139 0.0006226 3 Ubiquitin mediated proteolysis www.genome.jp/d...
KEGG 04520 View Gene Set 1.621e-05 75 0.0008674 4 Adherens junction www.genome.jp/d...
KEGG 03430 View Gene Set 4.061e-05 23 0.001245 5 Mismatch repair www.genome.jp/d...
KEGG 04114 View Gene Set 3.663e-05 114 0.001245 5 Oocyte meiosis www.genome.jp/d...
KEGG 05131 View Gene Set 4.071e-05 64 0.001245 5 Shigellosis www.genome.jp/d...
KEGG 04722 View Gene Set 0.0004469 126 0.01195 8 Neurotrophin signaling pathway www.genome.jp/d...
KEGG 04142 View Gene Set 0.0005103 121 0.01213 9 Lysosome www.genome.jp/d...
KEGG 04622 View Gene Set 0.0006545 71 0.01401 10 RIG-I-like receptor signaling pathway www.genome.jp/d...
KEGG 00562 View Gene Set 0.001354 57 0.02232 11 Inositol phosphate metabolism www.genome.jp/d...
KEGG 01040 View Gene Set 0.001433 21 0.02232 11 Biosynthesis of unsaturated fatty acids www.genome.jp/d...
KEGG 04070 View Gene Set 0.00146 78 0.02232 11 Phosphatidylinositol signaling system www.genome.jp/d...
KEGG 04320 View Gene Set 0.001405 25 0.02232 11 Dorso-ventral axis formation www.genome.jp/d...
KEGG 04115 View Gene Set 0.001836 69 0.02459 15 p53 signaling pathway www.genome.jp/d...
KEGG 04914 View Gene Set 0.001839 87 0.02459 15 Progesterone-mediated oocyte maturation www.genome.jp/d...
KEGG 03420 View Gene Set 0.002245 44 0.02826 17 Nucleotide excision repair www.genome.jp/d...
KEGG 05120 View Gene Set 0.002512 68 0.02987 18 Epithelial cell signaling in Helicobacter pylori infection www.genome.jp/d...
KEGG 03440 View Gene Set 0.00296 28 0.03167 19 Homologous recombination www.genome.jp/d...
KEGG 04012 View Gene Set 0.002955 87 0.03167 19 ErbB signaling pathway www.genome.jp/d...
KEGG 04310 View Gene Set 0.003363 151 0.03427 21 Wnt signaling pathway www.genome.jp/d...
KEGG 05130 View Gene Set 0.0039 59 0.03628 22 Pathogenic Escherichia coli infection www.genome.jp/d...
KEGG 05213 View Gene Set 0.003848 52 0.03628 22 Endometrial cancer www.genome.jp/d...
KEGG 03050 View Gene Set 0.004093 48 0.03649 24 Proteasome www.genome.jp/d...
KEGG 00240 View Gene Set 0.006866 99 0.04942 25 Pyrimidine metabolism www.genome.jp/d...
KEGG 03040 View Gene Set 0.006566 128 0.04942 25 Spliceosome www.genome.jp/d...
KEGG 03410 View Gene Set 0.006043 34 0.04942 25 Base excision repair www.genome.jp/d...
KEGG 04144 View Gene Set 0.006475 205 0.04942 25 Endocytosis www.genome.jp/d...
KEGG 05100 View Gene Set 0.007159 73 0.04942 25 Bacterial invasion of epithelial cells www.genome.jp/d...
KEGG 05215 View Gene Set 0.005995 89 0.04942 25 Prostate cancer www.genome.jp/d...
KEGG 05222 View Gene Set 0.007042 84 0.04942 25 Small cell lung cancer www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0005622 View Gene Set 3.892e-49 11329 5.199e-45 1 intracellular amigo.geneontol...
GO GO:0044424 View Gene Set 2.715e-47 10976 1.813e-43 2 intracellular part amigo.geneontol...
GO GO:0043227 View Gene Set 3.985e-44 8383 1.775e-40 3 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 6.289e-44 8376 2.101e-40 4 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0005634 View Gene Set 8.028e-42 5198 1.788e-38 5 nucleus amigo.geneontol...
GO GO:0043229 View Gene Set 7.994e-42 9346 1.788e-38 5 intracellular organelle amigo.geneontol...
GO GO:0043226 View Gene Set 1.509e-41 9360 2.881e-38 7 organelle amigo.geneontol...
GO GO:0044428 View Gene Set 8.847e-35 1938 1.477e-31 8 nuclear part amigo.geneontol...
GO GO:0044260 View Gene Set 3.51e-32 5699 5.211e-29 9 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0031981 View Gene Set 8.456e-31 1518 1.13e-27 10 nuclear lumen amigo.geneontol...
GO GO:0007049 View Gene Set 2.108e-29 1006 2.561e-26 11 cell cycle amigo.geneontol...
GO GO:0070013 View Gene Set 6.732e-28 1845 7.495e-25 12 intracellular organelle lumen amigo.geneontol...
GO GO:0044422 View Gene Set 8.391e-28 5089 8.623e-25 13 organelle part amigo.geneontol...
GO GO:0044446 View Gene Set 2.071e-27 5019 1.976e-24 14 intracellular organelle part amigo.geneontol...
GO GO:0005654 View Gene Set 5.731e-26 939 4.786e-23 15 nucleoplasm amigo.geneontol...
GO GO:0043233 View Gene Set 5.438e-26 1881 4.786e-23 15 organelle lumen amigo.geneontol...
GO GO:0022402 View Gene Set 8.5e-26 676 6.68e-23 17 cell cycle process amigo.geneontol...
GO GO:0031974 View Gene Set 2.96e-25 1917 2.197e-22 18 membrane-enclosed lumen amigo.geneontol...
GO GO:0000278 View Gene Set 6.737e-25 489 4.737e-22 19 mitotic cell cycle amigo.geneontol...
GO GO:0044237 View Gene Set 5.801e-24 7431 3.875e-21 20 cellular metabolic process amigo.geneontol...
GO GO:0043170 View Gene Set 8.619e-23 6274 5.483e-20 21 macromolecule metabolic process amigo.geneontol...
GO GO:0000280 View Gene Set 1.087e-22 276 6.314e-20 22 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 1.087e-22 276 6.314e-20 22 mitosis amigo.geneontol...
GO GO:0005515 View Gene Set 1.762e-22 8146 9.811e-20 24 protein binding amigo.geneontol...
GO GO:0000087 View Gene Set 2.375e-22 286 1.218e-19 25 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0022403 View Gene Set 2.462e-22 522 1.218e-19 25 cell cycle phase amigo.geneontol...
GO GO:0005694 View Gene Set 2.282e-22 507 1.218e-19 25 chromosome amigo.geneontol...
GO GO:0090304 View Gene Set 3.273e-22 3724 1.562e-19 28 nucleic acid metabolic process amigo.geneontol...
GO GO:0048285 View Gene Set 4.954e-22 286 2.282e-19 29 organelle fission amigo.geneontol...
GO GO:0006996 View Gene Set 5.188e-22 1501 2.31e-19 30 organelle organization amigo.geneontol...
GO GO:0006139 View Gene Set 2.456e-21 4294 1.058e-18 31 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0005737 View Gene Set 6.156e-21 7676 2.57e-18 32 cytoplasm amigo.geneontol...
GO GO:0000279 View Gene Set 3.124e-20 406 1.265e-17 33 M phase amigo.geneontol...
GO GO:0044427 View Gene Set 5.362e-19 420 2.107e-16 34 chromosomal part amigo.geneontol...
GO GO:0043228 View Gene Set 1.061e-18 2690 3.938e-16 35 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 1.061e-18 2690 3.938e-16 35 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0044238 View Gene Set 2.192e-18 7629 7.916e-16 37 primary metabolic process amigo.geneontol...
GO GO:0000166 View Gene Set 7.385e-18 2257 2.596e-15 38 nucleotide binding amigo.geneontol...
GO GO:0034641 View Gene Set 1.586e-17 4584 5.431e-15 39 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0006260 View Gene Set 2.388e-16 239 7.978e-14 40 DNA replication amigo.geneontol...
GO GO:0006259 View Gene Set 3.081e-16 592 1.004e-13 41 DNA metabolic process amigo.geneontol...
GO GO:0006807 View Gene Set 4.039e-16 4698 1.285e-13 42 nitrogen compound metabolic process amigo.geneontol...
GO GO:0005488 View Gene Set 5.456e-16 12334 1.695e-13 43 binding amigo.geneontol...
GO GO:0015630 View Gene Set 5.891e-16 587 1.789e-13 44 microtubule cytoskeleton amigo.geneontol...
GO GO:0051726 View Gene Set 1.151e-15 451 3.417e-13 45 regulation of cell cycle amigo.geneontol...
GO GO:0043412 View Gene Set 1.211e-15 1848 3.517e-13 46 macromolecule modification amigo.geneontol...
GO GO:0043687 View Gene Set 1.864e-15 1509 5.15e-13 47 post-translational protein modification amigo.geneontol...
GO GO:0032553 View Gene Set 1.889e-15 1851 5.15e-13 47 ribonucleotide binding amigo.geneontol...
GO GO:0032555 View Gene Set 1.889e-15 1851 5.15e-13 47 purine ribonucleotide binding amigo.geneontol...
GO GO:0008152 View Gene Set 3.601e-15 8439 9.621e-13 50 metabolic process amigo.geneontol...
GO GO:0006464 View Gene Set 4.177e-15 1768 1.094e-12 51 protein modification process amigo.geneontol...
GO GO:0017076 View Gene Set 1.181e-14 1934 3.034e-12 52 purine nucleotide binding amigo.geneontol...
GO GO:0060255 View Gene Set 3.299e-14 3411 8.317e-12 53 regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0006974 View Gene Set 4.055e-14 412 1.003e-11 54 response to DNA damage stimulus amigo.geneontol...
GO GO:0031323 View Gene Set 7.294e-14 3768 1.772e-11 55 regulation of cellular metabolic process amigo.geneontol...
GO GO:0009987 View Gene Set 7.535e-14 11620 1.798e-11 56 cellular process amigo.geneontol...
GO GO:0080090 View Gene Set 1.18e-13 3585 2.765e-11 57 regulation of primary metabolic process amigo.geneontol...
GO GO:0050794 View Gene Set 1.924e-13 6236 4.433e-11 58 regulation of cellular process amigo.geneontol...
GO GO:0000075 View Gene Set 2.707e-13 109 6.129e-11 59 cell cycle checkpoint amigo.geneontol...
GO GO:0019222 View Gene Set 3.6e-13 4060 8.016e-11 60 regulation of metabolic process amigo.geneontol...
GO GO:0005819 View Gene Set 4.321e-13 167 9.464e-11 61 spindle amigo.geneontol...
GO GO:0005524 View Gene Set 5.596e-13 1480 1.206e-10 62 ATP binding amigo.geneontol...
GO GO:0007059 View Gene Set 6.382e-13 94 1.353e-10 63 chromosome segregation amigo.geneontol...
GO GO:0003676 View Gene Set 7.78e-13 2979 1.624e-10 64 nucleic acid binding amigo.geneontol...
GO GO:0006261 View Gene Set 9.33e-13 74 1.918e-10 65 DNA-dependent DNA replication amigo.geneontol...
GO GO:0001883 View Gene Set 1.051e-12 1620 2.11e-10 66 purine nucleoside binding amigo.geneontol...
GO GO:0032559 View Gene Set 1.058e-12 1503 2.11e-10 66 adenyl ribonucleotide binding amigo.geneontol...
GO GO:0044464 View Gene Set 1.308e-12 15066 2.569e-10 68 cell part amigo.geneontol...
GO GO:0001882 View Gene Set 1.441e-12 1630 2.791e-10 69 nucleoside binding amigo.geneontol...
GO GO:0044267 View Gene Set 1.598e-12 2465 3.05e-10 70 cellular protein metabolic process amigo.geneontol...
GO GO:0005623 View Gene Set 1.624e-12 15067 3.056e-10 71 cell amigo.geneontol...
GO GO:0051301 View Gene Set 1.697e-12 358 3.149e-10 72 cell division amigo.geneontol...
GO GO:0034645 View Gene Set 4.629e-12 3529 8.472e-10 73 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0051276 View Gene Set 4.976e-12 548 8.984e-10 74 chromosome organization amigo.geneontol...
GO GO:0030554 View Gene Set 5.163e-12 1584 9.198e-10 75 adenyl nucleotide binding amigo.geneontol...
GO GO:0006281 View Gene Set 6.22e-12 309 1.093e-09 76 DNA repair amigo.geneontol...
GO GO:0008104 View Gene Set 9.655e-12 1048 1.675e-09 77 protein localization amigo.geneontol...
GO GO:0016043 View Gene Set 1.196e-11 2937 2.049e-09 78 cellular component organization amigo.geneontol...
GO GO:0000775 View Gene Set 4.318e-11 146 7.302e-09 79 chromosome centromeric region amigo.geneontol...
GO GO:0050789 View Gene Set 4.504e-11 6579 7.522e-09 80 regulation of biological process amigo.geneontol...
GO GO:0045184 View Gene Set 5.234e-11 904 8.633e-09 81 establishment of protein localization amigo.geneontol...
GO GO:0033554 View Gene Set 7.052e-11 698 1.149e-08 82 cellular response to stress amigo.geneontol...
GO GO:0010467 View Gene Set 8.409e-11 3806 1.354e-08 83 gene expression amigo.geneontol...
GO GO:0009059 View Gene Set 8.545e-11 3597 1.359e-08 84 macromolecule biosynthetic process amigo.geneontol...
GO GO:0019899 View Gene Set 9.598e-11 641 1.509e-08 85 enzyme binding amigo.geneontol...
GO GO:0015031 View Gene Set 1.233e-10 888 1.916e-08 86 protein transport amigo.geneontol...
GO GO:0010468 View Gene Set 1.763e-10 2958 2.681e-08 87 regulation of gene expression amigo.geneontol...
GO GO:0046907 View Gene Set 1.766e-10 753 2.681e-08 87 intracellular transport amigo.geneontol...
GO GO:0000819 View Gene Set 1.834e-10 38 2.753e-08 89 sister chromatid segregation amigo.geneontol...
GO GO:0019941 View Gene Set 1.965e-10 302 2.874e-08 90 modification-dependent protein catabolic process amigo.geneontol...
GO GO:0043632 View Gene Set 1.965e-10 302 2.874e-08 90 modification-dependent macromolecule catabolic process amigo.geneontol...
GO GO:0003824 View Gene Set 1.979e-10 5198 2.874e-08 90 catalytic activity amigo.geneontol...
GO GO:0006511 View Gene Set 2.633e-10 296 3.782e-08 93 ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0000070 View Gene Set 3.229e-10 37 4.589e-08 94 mitotic sister chromatid segregation amigo.geneontol...
GO GO:0010556 View Gene Set 6.28e-10 2901 8.831e-08 95 regulation of macromolecule biosynthetic process amigo.geneontol...
GO GO:0006350 View Gene Set 6.83e-10 2744 9.504e-08 96 transcription amigo.geneontol...
GO GO:0033036 View Gene Set 9.889e-10 1256 1.362e-07 97 macromolecule localization amigo.geneontol...
GO GO:0034613 View Gene Set 1.035e-09 501 1.411e-07 98 cellular protein localization amigo.geneontol...
GO GO:0070727 View Gene Set 1.355e-09 503 1.828e-07 99 cellular macromolecule localization amigo.geneontol...
GO GO:0019219 View Gene Set 2.088e-09 3040 2.789e-07 100 regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0051171 View Gene Set 2.139e-09 3066 2.829e-07 101 regulation of nitrogen compound metabolic process amigo.geneontol...
GO GO:0016070 View Gene Set 2.557e-09 2596 3.328e-07 102 RNA metabolic process amigo.geneontol...
GO GO:0070647 View Gene Set 2.565e-09 356 3.328e-07 102 protein modification by small protein conjugation or removal amigo.geneontol...
GO GO:0000793 View Gene Set 2.666e-09 136 3.425e-07 104 condensed chromosome amigo.geneontol...
GO GO:0045449 View Gene Set 3.134e-09 2647 3.988e-07 105 regulation of transcription amigo.geneontol...
GO GO:0044444 View Gene Set 3.245e-09 5184 4.09e-07 106 cytoplasmic part amigo.geneontol...
GO GO:0007346 View Gene Set 3.544e-09 174 4.425e-07 107 regulation of mitotic cell cycle amigo.geneontol...
GO GO:0005874 View Gene Set 4.406e-09 284 5.45e-07 108 microtubule amigo.geneontol...
GO GO:0006886 View Gene Set 7.086e-09 439 8.686e-07 109 intracellular protein transport amigo.geneontol...
GO GO:0005730 View Gene Set 8.589e-09 734 1.043e-06 110 nucleolus amigo.geneontol...
GO GO:0044451 View Gene Set 9.544e-09 600 1.149e-06 111 nucleoplasm part amigo.geneontol...
GO GO:0051325 View Gene Set 1.179e-08 147 1.407e-06 112 interphase amigo.geneontol...
GO GO:0003677 View Gene Set 1.25e-08 2028 1.478e-06 113 DNA binding amigo.geneontol...
GO GO:0003723 View Gene Set 1.855e-08 732 2.173e-06 114 RNA binding amigo.geneontol...
GO GO:0000228 View Gene Set 2.071e-08 177 2.406e-06 115 nuclear chromosome amigo.geneontol...
GO GO:0044265 View Gene Set 2.156e-08 479 2.483e-06 116 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0005856 View Gene Set 2.473e-08 1410 2.824e-06 117 cytoskeleton amigo.geneontol...
GO GO:0016740 View Gene Set 2.716e-08 1691 3.075e-06 118 transferase activity amigo.geneontol...
GO GO:0016567 View Gene Set 2.995e-08 286 3.362e-06 119 protein ubiquitination amigo.geneontol...
GO GO:0031326 View Gene Set 3.421e-08 3048 3.809e-06 120 regulation of cellular biosynthetic process amigo.geneontol...
GO GO:0005876 View Gene Set 4.224e-08 35 4.664e-06 121 spindle microtubule amigo.geneontol...
GO GO:0009889 View Gene Set 4.865e-08 3070 5.328e-06 122 regulation of biosynthetic process amigo.geneontol...
GO GO:0032446 View Gene Set 4.905e-08 310 5.328e-06 123 protein modification by small protein conjugation amigo.geneontol...
GO GO:0000776 View Gene Set 5.352e-08 92 5.766e-06 124 kinetochore amigo.geneontol...
GO GO:0010564 View Gene Set 5.444e-08 161 5.778e-06 125 regulation of cell cycle process amigo.geneontol...
GO GO:0000785 View Gene Set 5.449e-08 213 5.778e-06 125 chromatin amigo.geneontol...
GO GO:0007093 View Gene Set 5.671e-08 52 5.966e-06 127 mitotic cell cycle checkpoint amigo.geneontol...
GO GO:0031570 View Gene Set 5.834e-08 63 6.081e-06 128 DNA integrity checkpoint amigo.geneontol...
GO GO:0051329 View Gene Set 5.872e-08 138 6.081e-06 128 interphase of mitotic cell cycle amigo.geneontol...
GO GO:0017111 View Gene Set 7.228e-08 733 7.428e-06 130 nucleoside-triphosphatase activity amigo.geneontol...
GO GO:0044249 View Gene Set 8.937e-08 4326 9.114e-06 131 cellular biosynthetic process amigo.geneontol...
GO GO:0000226 View Gene Set 9.279e-08 178 9.392e-06 132 microtubule cytoskeleton organization amigo.geneontol...
GO GO:0065007 View Gene Set 1.086e-07 6980 1.084e-05 133 biological regulation amigo.geneontol...
GO GO:0016462 View Gene Set 1.087e-07 762 1.084e-05 133 pyrophosphatase activity amigo.geneontol...
GO GO:0030163 View Gene Set 1.133e-07 398 1.121e-05 135 protein catabolic process amigo.geneontol...
GO GO:0016818 View Gene Set 1.309e-07 765 1.286e-05 136 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides amigo.geneontol...
GO GO:0071103 View Gene Set 1.44e-07 140 1.405e-05 137 DNA conformation change amigo.geneontol...
GO GO:0006793 View Gene Set 1.632e-07 1308 1.569e-05 138 phosphorus metabolic process amigo.geneontol...
GO GO:0006796 View Gene Set 1.632e-07 1308 1.569e-05 138 phosphate metabolic process amigo.geneontol...
GO GO:0044430 View Gene Set 1.687e-07 979 1.61e-05 140 cytoskeletal part amigo.geneontol...
GO GO:0016817 View Gene Set 1.874e-07 769 1.776e-05 141 hydrolase activity acting on acid anhydrides amigo.geneontol...
GO GO:0044257 View Gene Set 2.203e-07 349 2.073e-05 142 cellular protein catabolic process amigo.geneontol...
GO GO:0004674 View Gene Set 2.483e-07 425 2.32e-05 143 protein serine/threonine kinase activity amigo.geneontol...
GO GO:0051603 View Gene Set 2.655e-07 346 2.463e-05 144 proteolysis involved in cellular protein catabolic process amigo.geneontol...
GO GO:0009057 View Gene Set 2.744e-07 570 2.528e-05 145 macromolecule catabolic process amigo.geneontol...
GO GO:0005657 View Gene Set 2.811e-07 34 2.555e-05 146 replication fork amigo.geneontol...
GO GO:0016605 View Gene Set 2.81e-07 39 2.555e-05 146 PML body amigo.geneontol...
GO GO:0007017 View Gene Set 3.883e-07 281 3.505e-05 148 microtubule-based process amigo.geneontol...
GO GO:0031396 View Gene Set 3.963e-07 121 3.553e-05 149 regulation of protein ubiquitination amigo.geneontol...
GO GO:0016604 View Gene Set 4.083e-07 198 3.636e-05 150 nuclear body amigo.geneontol...
GO GO:0031400 View Gene Set 4.741e-07 141 4.195e-05 151 negative regulation of protein modification process amigo.geneontol...
GO GO:0008134 View Gene Set 4.867e-07 525 4.278e-05 152 transcription factor binding amigo.geneontol...
GO GO:0016772 View Gene Set 6.074e-07 895 5.304e-05 153 transferase activity transferring phosphorus-containing groups amigo.geneontol...
GO GO:0051340 View Gene Set 6.375e-07 85 5.531e-05 154 regulation of ligase activity amigo.geneontol...
GO GO:0000077 View Gene Set 6.733e-07 59 5.803e-05 155 DNA damage checkpoint amigo.geneontol...
GO GO:0003697 View Gene Set 7.079e-07 58 6.063e-05 156 single-stranded DNA binding amigo.geneontol...
GO GO:0005815 View Gene Set 7.282e-07 277 6.196e-05 157 microtubule organizing center amigo.geneontol...
GO GO:0048523 View Gene Set 8.288e-07 1895 7.008e-05 158 negative regulation of cellular process amigo.geneontol...
GO GO:0015631 View Gene Set 9.541e-07 101 8.017e-05 159 tubulin binding amigo.geneontol...
GO GO:0019538 View Gene Set 9.674e-07 2935 8.077e-05 160 protein metabolic process amigo.geneontol...
GO GO:0030528 View Gene Set 9.86e-07 950 8.182e-05 161 transcription regulator activity amigo.geneontol...
GO GO:0000779 View Gene Set 1.006e-06 79 8.295e-05 162 condensed chromosome centromeric region amigo.geneontol...
GO GO:0048193 View Gene Set 1.082e-06 137 8.868e-05 163 Golgi vesicle transport amigo.geneontol...
GO GO:0023034 View Gene Set 1.121e-06 1522 9.134e-05 164 intracellular signaling pathway amigo.geneontol...
GO GO:0051641 View Gene Set 1.152e-06 1206 9.327e-05 165 cellular localization amigo.geneontol...
GO GO:0006270 View Gene Set 1.206e-06 26 9.65e-05 166 DNA-dependent DNA replication initiation amigo.geneontol...
GO GO:0003712 View Gene Set 1.205e-06 364 9.65e-05 166 transcription cofactor activity amigo.geneontol...
GO GO:0006325 View Gene Set 1.22e-06 425 9.703e-05 168 chromatin organization amigo.geneontol...
GO GO:0009058 View Gene Set 1.3e-06 4436 0.0001028 169 biosynthetic process amigo.geneontol...
GO GO:0051351 View Gene Set 1.316e-06 74 0.0001034 170 positive regulation of ligase activity amigo.geneontol...
GO GO:0031399 View Gene Set 1.545e-06 377 0.0001207 171 regulation of protein modification process amigo.geneontol...
GO GO:0051246 View Gene Set 1.698e-06 652 0.0001319 172 regulation of protein metabolic process amigo.geneontol...
GO GO:0043161 View Gene Set 2.022e-06 162 0.0001561 173 proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0006605 View Gene Set 2.458e-06 273 0.0001869 174 protein targeting amigo.geneontol...
GO GO:0051438 View Gene Set 2.46e-06 82 0.0001869 174 regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0000777 View Gene Set 2.462e-06 74 0.0001869 174 condensed chromosome kinetochore amigo.geneontol...
GO GO:0044454 View Gene Set 2.548e-06 139 0.0001912 177 nuclear chromosome part amigo.geneontol...
GO GO:0016773 View Gene Set 2.548e-06 708 0.0001912 177 phosphotransferase activity alcohol group as acceptor amigo.geneontol...
GO GO:0042770 View Gene Set 2.59e-06 103 0.0001933 179 DNA damage response signal transduction amigo.geneontol...
GO GO:0010498 View Gene Set 2.89e-06 166 0.0002145 180 proteasomal protein catabolic process amigo.geneontol...
GO GO:0051649 View Gene Set 3.035e-06 1116 0.000224 181 establishment of localization in cell amigo.geneontol...
GO GO:0016568 View Gene Set 3.407e-06 324 0.0002501 182 chromatin modification amigo.geneontol...
GO GO:0051716 View Gene Set 3.655e-06 1102 0.0002669 183 cellular response to stimulus amigo.geneontol...
GO GO:0007051 View Gene Set 4.695e-06 57 0.0003409 184 spindle organization amigo.geneontol...
GO GO:0051443 View Gene Set 5.225e-06 71 0.0003773 185 positive regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0051439 View Gene Set 5.385e-06 68 0.0003868 186 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0044248 View Gene Set 5.561e-06 1005 0.0003973 187 cellular catabolic process amigo.geneontol...
GO GO:0016310 View Gene Set 6.193e-06 1141 0.0004401 188 phosphorylation amigo.geneontol...
GO GO:0032270 View Gene Set 6.393e-06 301 0.0004495 189 positive regulation of cellular protein metabolic process amigo.geneontol...
GO GO:0043234 View Gene Set 6.372e-06 2680 0.0004495 189 protein complex amigo.geneontol...
GO GO:0006468 View Gene Set 6.45e-06 807 0.0004512 191 protein amino acid phosphorylation amigo.geneontol...
GO GO:0010605 View Gene Set 7.484e-06 827 0.0005154 192 negative regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0032268 View Gene Set 7.471e-06 576 0.0005154 192 regulation of cellular protein metabolic process amigo.geneontol...
GO GO:0016301 View Gene Set 7.453e-06 769 0.0005154 192 kinase activity amigo.geneontol...
GO GO:0005635 View Gene Set 8.375e-06 234 0.0005738 195 nuclear envelope amigo.geneontol...
GO GO:0005813 View Gene Set 9.378e-06 166 0.0006392 196 centrosome amigo.geneontol...
GO GO:0050000 View Gene Set 9.937e-06 17 0.0006705 197 chromosome localization amigo.geneontol...
GO GO:0051303 View Gene Set 9.937e-06 17 0.0006705 197 establishment of chromosome localization amigo.geneontol...
GO GO:0051247 View Gene Set 1.121e-05 317 0.0007524 199 positive regulation of protein metabolic process amigo.geneontol...
GO GO:0006302 View Gene Set 1.266e-05 65 0.0008458 200 double-strand break repair amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 1.035e-62 1180 2.476e-59 1 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 1.102e-47 825 1.318e-44 2 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 2.116e-41 243 1.687e-38 3 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 5.72e-41 1253 3.42e-38 4 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 1.698e-39 1582 8.123e-37 5 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 5.116e-38 435 2.039e-35 6 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 1.931e-36 537 6.396e-34 7 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 2.139e-36 744 6.396e-34 7 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 2.06e-34 630 5.474e-32 9 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 4.963e-34 1353 1.187e-31 10 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 3.683e-33 138 8.009e-31 11 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 6.601e-33 410 1.316e-30 12 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 1.683e-32 859 3.096e-30 13 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 2.609e-29 1641 4.457e-27 14 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 3.81e-29 406 6.075e-27 15 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 5.006e-29 418 7.484e-27 16 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 5.66e-27 475 7.964e-25 17 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 9.528e-27 143 1.266e-24 18 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 1.691e-26 681 2.129e-24 19 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 1.891e-26 639 2.262e-24 20 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 7.15e-26 666 8.145e-24 21 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 9.541e-26 1375 1.037e-23 22 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 1.432e-25 589 1.49e-23 23 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 2.824e-25 783 2.815e-23 24 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 5.28e-25 571 5.052e-23 25 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 1.523e-24 241 1.401e-22 26 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215 View Gene Set 1.968e-24 809 1.744e-22 27 Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h. www.broad.mit.e...
Broad BROWNE_INTERFERON_RESPONSIVE_GENES View Gene Set 2.177e-23 67 1.86e-21 28 Genes up-regulated in primary fibroblast culture after treatment with interferon alpha for 6 h. www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP View Gene Set 5.173e-23 242 4.267e-21 29 Genes up-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 7.751e-23 164 6.18e-21 30 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 1.209e-22 265 9.325e-21 31 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 2.041e-22 532 1.526e-20 32 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 2.629e-22 314 1.899e-20 33 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 2.699e-22 80 1.899e-20 33 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 2.812e-22 739 1.922e-20 35 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 2.893e-22 203 1.922e-20 36 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 3.179e-22 201 2.055e-20 37 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 2.955e-21 332 1.86e-19 38 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 5.064e-21 485 3.106e-19 39 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 5.237e-21 289 3.132e-19 40 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 9.751e-21 577 5.689e-19 41 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 2.479e-20 944 1.412e-18 42 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 2.634e-20 415 1.465e-18 43 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 4.125e-20 86 2.243e-18 44 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 6.8e-20 180 3.615e-18 45 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 8.131e-20 139 4.228e-18 46 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN View Gene Set 4.104e-19 431 2.088e-17 47 Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_UP View Gene Set 6.817e-19 413 3.397e-17 48 Genes up-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 1.345e-18 869 6.566e-17 49 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 4.593e-18 370 2.197e-16 50 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 5.88e-18 351 2.758e-16 51 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 6.849e-18 436 3.151e-16 52 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad MOSERLE_IFNA_RESPONSE View Gene Set 1.069e-17 30 4.826e-16 53 Top 50 genes up-regulated in ovarian cancer progenitor cells (also known as side population SP cells) in response to interferon alpha (IFNA). www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN View Gene Set 1.198e-17 732 5.307e-16 54 Genes down-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 2.337e-17 276 1.016e-15 55 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 3.774e-17 53 1.612e-15 56 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN View Gene Set 4.265e-17 256 1.79e-15 57 Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 6.883e-17 290 2.839e-15 58 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 1.124e-16 62 4.558e-15 59 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP View Gene Set 2.364e-16 716 9.425e-15 60 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 2.405e-16 283 9.431e-15 61 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 3.467e-16 92 1.338e-14 62 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP View Gene Set 1.004e-15 452 3.811e-14 63 Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad PARENT_MTOR_SIGNALING_UP View Gene Set 1.585e-15 541 5.923e-14 64 Genes up-regulated in HepaRG cells (liver cancer) expressing constituvely active form of MTOR [Gene ID=2475]. www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN View Gene Set 2.74e-15 297 1.008e-13 65 Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 4.671e-15 138 1.693e-13 66 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 5.276e-15 408 1.884e-13 67 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 6.37e-15 269 2.241e-13 68 Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 7.537e-15 946 2.613e-13 69 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 9.347e-15 96 3.194e-13 70 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad WANG_CLIM2_TARGETS_DN View Gene Set 9.768e-15 166 3.245e-13 71 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express a dominant negative form of CLIM2 [Gene ID=8861] by a Tet Off system. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 9.67e-15 471 3.245e-13 71 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 1.54e-14 303 5.046e-13 73 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 1.582e-14 279 5.115e-13 74 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 1.878e-14 757 5.989e-13 75 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 5.738e-14 599 1.806e-12 76 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK View Gene Set 8.013e-14 100 2.47e-12 77 Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 8.056e-14 92 2.47e-12 77 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 9.385e-14 331 2.842e-12 79 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 1.269e-13 509 3.793e-12 80 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 2.603e-13 427 7.687e-12 81 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 2.83e-13 758 8.255e-12 82 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad GARY_CD5_TARGETS_UP View Gene Set 4.447e-13 463 1.282e-11 83 Genes up-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP View Gene Set 5.096e-13 57 1.451e-11 84 DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not. www.broad.mit.e...
Broad OSMAN_BLADDER_CANCER_UP View Gene Set 5.582e-13 387 1.571e-11 85 Genes up-regulated in blood samples from bladder cancer patients. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP View Gene Set 6.785e-13 135 1.866e-11 86 Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 6.759e-13 152 1.866e-11 86 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN View Gene Set 7.508e-13 43 2.041e-11 88 Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757]. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN View Gene Set 1.262e-12 131 3.393e-11 89 Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad BENPORATH_PROLIFERATION View Gene Set 1.542e-12 140 4.098e-11 90 Set 'Proliferation Cluster': genes defined in human breast tumor expression data. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP View Gene Set 2.064e-12 53 5.425e-11 91 The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 2.108e-12 294 5.481e-11 92 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 2.231e-12 158 5.738e-11 93 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad PYEON_CANCER_HEAD_AND_NECK_VS_CERVICAL_UP View Gene Set 2.351e-12 175 5.982e-11 94 Up-regulated genes in head and neck cancer compared to cervical carcinoma samples. www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP View Gene Set 3.468e-12 52 8.732e-11 95 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage. www.broad.mit.e...
Broad DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN View Gene Set 5.188e-12 303 1.293e-10 96 Genes down-regulated in T-PLL cells (T-cell prolymphocytic leukemia) bearing the inv(14)/t(14:14) chromosomal aberration. www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 5.372e-12 213 1.325e-10 97 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP View Gene Set 5.47e-12 129 1.335e-10 98 Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad DER_IFN_BETA_RESPONSE_UP View Gene Set 5.722e-12 82 1.383e-10 99 Genes up-regulated in HT1080 (fibrosarcoma) cells by treatment with interferon beta for 6 h. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 5.903e-12 212 1.412e-10 100 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad GENTILE_UV_HIGH_DOSE_DN View Gene Set 9.173e-12 240 2.172e-10 101 Selected genes down-regulated in WS1 (fibroblast) in response to irradiation with high dose UV-C. www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN View Gene Set 9.413e-12 49 2.207e-10 102 Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector. www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN View Gene Set 1.155e-11 52 2.682e-10 103 Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage. www.broad.mit.e...
Broad DAUER_STAT3_TARGETS_DN View Gene Set 1.216e-11 37 2.798e-10 104 Top 50 genes down-regulated in A549 cells (lung cancer) expressing STAT3 [Gene ID=6774] off an adenovirus vector. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 1.47e-11 768 3.348e-10 105 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP View Gene Set 1.582e-11 93 3.571e-10 106 Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte. www.broad.mit.e...
Broad REN_BOUND_BY_E2F View Gene Set 1.675e-11 47 3.744e-10 107 Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 1.86e-11 368 4.119e-10 108 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP View Gene Set 3.341e-11 80 7.332e-10 109 Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages. www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER View Gene Set 3.722e-11 60 8.094e-10 110 Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database. www.broad.mit.e...
Broad RADAEVA_RESPONSE_TO_IFNA1_UP View Gene Set 4.684e-11 32 1.009e-09 111 Genes up-regulated in primary hepatocytes and Hep3B (hepatocyte) cells in response to IFNA [Gene ID=3439]. www.broad.mit.e...
Broad BENNETT_SYSTEMIC_LUPUS_ERYTHEMATOSUS View Gene Set 5.239e-11 23 1.119e-09 112 Genes significantly up-regulated in the blood mononuclear cells from patients with systemic lupus erythematosus compared to those from healthy persons. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 5.97e-11 915 1.264e-09 113 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN View Gene Set 6.708e-11 111 1.408e-09 114 Genes down-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP View Gene Set 7.569e-11 43 1.574e-09 115 Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes. www.broad.mit.e...
Broad ZHANG_INTERFERON_RESPONSE View Gene Set 1.045e-10 21 2.155e-09 116 Interferon-inducible genes up-regulated in A549 cells (lung cancer) infected with a respiratory syncytial virus (RSV) that had its NS1 [Gene ID=1494468] gene knocked down by RNAi. www.broad.mit.e...
Broad EINAV_INTERFERON_SIGNATURE_IN_CANCER View Gene Set 1.07e-10 27 2.188e-09 117 A gene expression signature found in a subset of cancer patients suggestive of a deregulated immune or inflammatory response. www.broad.mit.e...
Broad DER_IFN_ALPHA_RESPONSE_UP View Gene Set 1.118e-10 57 2.265e-09 118 Genes up-regulated in HT1080 cells (fibrosarcoma) by treatment with interferon alpha for 6 h. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 1.13e-10 1045 2.271e-09 119 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 1.29e-10 205 2.571e-09 120 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad WANG_LMO4_TARGETS_DN View Gene Set 1.442e-10 327 2.852e-09 121 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN View Gene Set 1.706e-10 42 3.344e-09 122 Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037]. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN View Gene Set 2.216e-10 76 4.31e-09 123 Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES View Gene Set 2.91e-10 128 5.613e-09 124 Genes involved in DNA replication compiled manually by the authors. www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS View Gene Set 3.453e-10 19 6.607e-09 125 RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1. www.broad.mit.e...
Broad WILCOX_PRESPONSE_TO_ROGESTERONE_UP View Gene Set 3.602e-10 143 6.837e-09 126 Genes up-regulated in primary cultures of ovarian surface epithlium cells exposed to progesterone [PubChem=5994] for 5 days. www.broad.mit.e...
Broad WANG_LMO4_TARGETS_UP View Gene Set 6.17e-10 341 1.162e-08 127 Genes up-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE View Gene Set 6.794e-10 36 1.27e-08 128 Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation. www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION View Gene Set 7.081e-10 71 1.313e-08 129 Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts). www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN View Gene Set 7.24e-10 742 1.332e-08 130 Genes with copy number losses in primary neuroblastoma tumors. www.broad.mit.e...
Broad BOWIE_RESPONSE_TO_TAMOXIFEN View Gene Set 7.885e-10 14 1.44e-08 131 Genes up-regulated by tamoxifen [PubChem=5376] in HMEC-E6 cells (mammary epithelial cells damaged by expression of HPV-16 E6 [Gene ID=1489078]). www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP View Gene Set 9.468e-10 100 1.716e-08 132 Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959]. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 9.56e-10 1209 1.719e-08 133 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad GEORGES_CELL_CYCLE_MIR192_TARGETS View Gene Set 1.148e-09 59 2.049e-08 134 Experimentally validated direct targets of MIR192 [Gene ID=406967] microRNA; MIR192 caused cell cycle arrest in HCT116 cells (colon cancer). www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 1.156e-09 140 2.049e-08 134 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad VERNELL_RETINOBLASTOMA_PATHWAY_UP View Gene Set 1.175e-09 39 2.067e-08 136 Cluster 1: genes up-regulated by RB1 [Gene ID=5925] CDNK2A [Gene ID=1029] and one of the E2Fs (E2F1 E2F2 or E2F3 [Gene ID=1869 1870 1871]). www.broad.mit.e...
Broad CHEN_HOXA5_TARGETS_9HR_UP View Gene Set 1.278e-09 210 2.232e-08 137 Differentially expressed genes 9 hr after tinduction of HoxA5 [Gene ID=3205] expression in a breast cancer cell line. www.broad.mit.e...
Broad CHANG_CYCLING_GENES View Gene Set 1.303e-09 49 2.258e-08 138 Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_RESPONSIVE_TO_ESTROGEN_DN View Gene Set 1.334e-09 41 2.295e-08 139 Genes down-regulated by estradiol [PubChem=5757] and down-regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP View Gene Set 1.362e-09 52 2.326e-08 140 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G23 defined by unsupervised clustering. www.broad.mit.e...
Broad YU_MYC_TARGETS_UP View Gene Set 1.835e-09 37 3.112e-08 141 Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609]. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 4.103e-09 367 6.912e-08 142 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 4.518e-09 806 7.557e-08 143 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2 View Gene Set 4.917e-09 33 8.168e-08 144 Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_UP View Gene Set 5.162e-09 328 8.516e-08 145 Genes up-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad DOUGLAS_BMI1_TARGETS_DN View Gene Set 6.044e-09 270 9.902e-08 146 Genes down-regulated in A4573 cells (Ewing's sarcoma ESFT) after knockdown of BMI1 [Gene ID=648] by RNAi. www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 6.492e-09 704 1.056e-07 147 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN View Gene Set 6.929e-09 431 1.12e-07 148 Genes down-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5 View Gene Set 7.026e-09 446 1.128e-07 149 The 'group 5 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 but not ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP View Gene Set 7.981e-09 388 1.273e-07 150 Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 9.887e-09 184 1.566e-07 151 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_SCC_DN View Gene Set 1.04e-08 96 1.636e-07 152 Genes down-regulated in SCC12B2 cells (squamous cell carcinoma) by UV-B irradiation. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN View Gene Set 1.385e-08 104 2.165e-07 153 Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years). www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_UP View Gene Set 1.613e-08 208 2.506e-07 154 Genes up-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK). www.broad.mit.e...
Broad UROSEVIC_RESPONSE_TO_IMIQUIMOD View Gene Set 1.756e-08 16 2.709e-07 155 Interferon cluster genes up-regulated in skin tumors treated with imiquimod [PubChem=57469]. www.broad.mit.e...
Broad GRANDVAUX_IFN_RESPONSE_NOT_VIA_IRF3 View Gene Set 1.77e-08 11 2.714e-07 156 Genes up-regulated in Jurkat cells (T lymphocyte) by IFN1@ and IFNB1 [Gene ID=3438 3456] but not by overexpression of a constitutively active form of IRF3 [Gene ID=3661]. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 2.14e-08 532 3.261e-07 157 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 2.174e-08 301 3.291e-07 158 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE View Gene Set 2.316e-08 315 3.484e-07 159 Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 2.769e-08 469 4.14e-07 160 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 2.788e-08 657 4.142e-07 161 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad ZHU_CMV_ALL_UP View Gene Set 3.362e-08 60 4.963e-07 162 Up-regulated at any timepoint following infection of primary human foreskin fibroblasts with CMV www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_DN View Gene Set 3.417e-08 211 5.014e-07 163 Genes down-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad SANA_RESPONSE_TO_IFNG_UP View Gene Set 3.64e-08 68 5.309e-07 164 Genes up-regulated in five primary endothelial cell types (lung aortic iliac dermal and colon) by IFNG [Gene ID=3458]. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN View Gene Set 3.856e-08 136 5.59e-07 165 Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad VANHARANTA_UTERINE_FIBROID_WITH_7Q_DELETION_UP View Gene Set 3.964e-08 62 5.712e-07 166 Genes up-regulated in uterine fibroids with deletions in the 7q region vs those without the deletion. www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G6 View Gene Set 4.667e-08 122 6.684e-07 167 Cluster G6: genes increasingly down-regulated in NHEK cells (normal keratinocyte) after UV-B irradiation. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 4.776e-08 171 6.8e-07 168 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad THUM_SYSTOLIC_HEART_FAILURE_DN View Gene Set 5.733e-08 221 8.114e-07 169 Genes down-regulated in samples with systolic heart failure compared to normal hearts. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_INCIPIENT_UP View Gene Set 6.071e-08 382 8.542e-07 170 Genes up-regulated in patients at the incipient stage of Alzheimer's disease. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_480_HELA View Gene Set 6.864e-08 159 9.602e-07 171 Genes whose expression peaked at 480 min after stimulation of HeLa cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN View Gene Set 7.643e-08 66 1.058e-06 172 Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector. www.broad.mit.e...
Broad ZHU_CMV_8_HR_UP View Gene Set 7.653e-08 32 1.058e-06 172 Up-regulated at 8 h following infection of primary human foreskin fibroblasts with CMV www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_6HR_DN View Gene Set 9.587e-08 160 1.318e-06 174 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 6h. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_DN View Gene Set 9.887e-08 329 1.351e-06 175 Genes down-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 1.019e-07 154 1.384e-06 176 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN View Gene Set 1.024e-07 53 1.384e-06 176 Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019]. www.broad.mit.e...
Broad NAGASHIMA_NRG1_SIGNALING_UP View Gene Set 1.265e-07 171 1.7e-06 178 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [Gene ID=3084]. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 1.466e-07 583 1.958e-06 179 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_DN View Gene Set 1.863e-07 230 2.476e-06 180 Genes down-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN View Gene Set 1.953e-07 160 2.581e-06 181 Genes down-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2 STK6 and ZNF217 [Gene ID=4605 6790 7764] www.broad.mit.e...
Broad STEIN_ESR1_TARGETS View Gene Set 2.005e-07 84 2.635e-06 182 Genes regulated by ESR1 [Gene ID=2099] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN View Gene Set 2.225e-07 121 2.909e-06 183 Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_2HR_DN View Gene Set 2.999e-07 85 3.898e-06 184 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 2h. www.broad.mit.e...
Broad BOWIE_RESPONSE_TO_EXTRACELLULAR_MATRIX View Gene Set 3.248e-07 10 4.2e-06 185 Genes up-regulated by growing HMEC-E6 cells (mammary epithelial cells damaged by expression of HPV-16 E6 [Gene ID=1489078]) in extracellular matrix (ECM). www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_DN View Gene Set 3.615e-07 238 4.649e-06 186 Genes down-regulated in peripheral blood mononucleocytes by HGF [Gene ID=3082] compared to those regulated by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad LIU_SOX4_TARGETS_UP View Gene Set 3.66e-07 131 4.682e-06 187 Genes up-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and down-regulated by its RNAi knockdown. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_DN View Gene Set 3.772e-07 487 4.799e-06 188 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_3D_UP View Gene Set 4.51e-07 174 5.708e-06 189 Genes up-regulated in CD34+ [Gene ID=947] hematopoetic cells by expression of NUP98-HOXA9 fusion [Gene ID=4928 3205] off a retroviral vector at 3 days after transduction. www.broad.mit.e...
Broad DER_IFN_GAMMA_RESPONSE_UP View Gene Set 4.725e-07 58 5.948e-06 190 Genes up-regulated in HT1080 (fibrosarcoma) cells by treatment with interferon gamma for 6 h. www.broad.mit.e...
Broad SASAKI_ADULT_T_CELL_LEUKEMIA View Gene Set 6.289e-07 137 7.875e-06 191 Genes up-regulated in adult T-cell leukemia (ATL) cells compared to T lymphocytes from healthy controls. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP View Gene Set 7.118e-07 331 8.868e-06 192 Genes up-regulated in peripheral blood monocytes by CSF2RB (GM-CSF) [Gene ID=1437] and IL4 [Gene ID=3565]. www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN View Gene Set 7.27e-07 224 9.011e-06 193 Genes down-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad KOKKINAKIS_METHIONINE_DEPRIVATION_96HR_DN View Gene Set 7.496e-07 69 9.243e-06 194 Genes down-regulated in MEWO cells (melanoma) after 96 h of methionine [PubChem=876] deprivation. www.broad.mit.e...
Broad GENTILE_RESPONSE_CLUSTER_D3 View Gene Set 7.549e-07 44 9.26e-06 195 Cluster d3: genes progressively down-regulated in WS1 cells (fibroblast) through 12 h irradiation with high dose UV-C. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 8.879e-07 268 1.084e-05 196 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad KALMA_E2F1_TARGETS View Gene Set 8.997e-07 11 1.092e-05 197 DNA replication genes up-regulated in a Rat-1a cell line (fibroblast) by expression of E2F1 [Gene ID=1869]. www.broad.mit.e...
Broad SEITZ_NEOPLASTIC_TRANSFORMATION_BY_8P_DELETION_UP View Gene Set 9.045e-07 72 1.093e-05 198 Genes up-regulated in CT60/4 cells (breast cancer reverted to normal by transfer of chromosome 8p region) vs parental MDA-MB-231 cells (deleted chromosome 8p). www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_KINOME_RED View Gene Set 9.3e-07 15 1.112e-05 199 Genes in the red cluster of protein kinases distinguishing between luminal A and basal breast cancer subtypes. www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL View Gene Set 9.3e-07 15 1.112e-05 199 Protein kinases distinguishing between basal and luminal A subtypes of breast cancer. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_SRCRPTP_PATHWAY View Gene Set 1.934e-06 11 0.0004196 1 Activation of Src by Protein-tyrosine phosphatase alpha www.broad.mit.e...
Broad BIOCARTA_P53_PATHWAY View Gene Set 3.623e-05 16 0.003199 2 p53 Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_ATRBRCA_PATHWAY View Gene Set 4.422e-05 21 0.003199 2 Role of BRCA1 BRCA2 and ATR in Cancer Susceptibility www.broad.mit.e...
Broad BIOCARTA_MCM_PATHWAY View Gene Set 0.0001383 18 0.005001 4 CDK Regulation of DNA Replication www.broad.mit.e...
Broad BIOCARTA_P38MAPK_PATHWAY View Gene Set 0.0001373 40 0.005001 4 p38 MAPK Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_RB_PATHWAY View Gene Set 0.0001021 13 0.005001 4 RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage www.broad.mit.e...
Broad BIOCARTA_PYK2_PATHWAY View Gene Set 0.0002415 29 0.007485 7 Links between Pyk2 and Map Kinases www.broad.mit.e...
Broad BIOCARTA_G2_PATHWAY View Gene Set 0.000398 24 0.0108 8 Cell Cycle: G2/M Checkpoint www.broad.mit.e...
Broad BIOCARTA_EGF_PATHWAY View Gene Set 0.0005448 31 0.01182 9 EGF Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_ACTINY_PATHWAY View Gene Set 0.0004936 20 0.01182 9 Y branching of actin filaments www.broad.mit.e...
Broad BIOCARTA_AT1R_PATHWAY View Gene Set 0.001135 34 0.01508 11 Angiotensin II mediated activation of JNK Pathway via Pyk2 dependent signaling www.broad.mit.e...
Broad BIOCARTA_SKP2E2F_PATHWAY View Gene Set 0.001309 10 0.01508 11 E2F1 Destruction Pathway www.broad.mit.e...
Broad BIOCARTA_HIVNEF_PATHWAY View Gene Set 0.00132 58 0.01508 11 HIV-I Nef: negative effector of Fas and TNF www.broad.mit.e...
Broad BIOCARTA_IL6_PATHWAY View Gene Set 0.001152 22 0.01508 11 IL 6 signaling pathway www.broad.mit.e...
Broad BIOCARTA_MAPK_PATHWAY View Gene Set 0.0008869 87 0.01508 11 MAPKinase Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_EIF4_PATHWAY View Gene Set 0.0009595 24 0.01508 11 Regulation of eIF4e and p70 S6 Kinase www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY View Gene Set 0.001244 10 0.01508 11 Role of Ran in mitotic spindle regulation www.broad.mit.e...
Broad BIOCARTA_GPCR_PATHWAY View Gene Set 0.001301 35 0.01508 11 Signaling Pathway from G-Protein Families www.broad.mit.e...
Broad BIOCARTA_WNT_PATHWAY View Gene Set 0.0009148 26 0.01508 11 WNT Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_G1_PATHWAY View Gene Set 0.001821 28 0.01976 20 Cell Cycle: G1/S Check Point www.broad.mit.e...
Broad BIOCARTA_RHO_PATHWAY View Gene Set 0.002451 32 0.02533 21 Rho cell motility signaling pathway www.broad.mit.e...
Broad BIOCARTA_MYOSIN_PATHWAY View Gene Set 0.002941 31 0.02901 22 PKC-catalyzed phosphorylation of inhibitory phosphoprotein of myosin phosphatase www.broad.mit.e...
Broad BIOCARTA_BCR_PATHWAY View Gene Set 0.003232 35 0.03049 23 BCR Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_EGFR_SMRTE_PATHWAY View Gene Set 0.003779 11 0.0328 24 Map Kinase Inactivation of SMRT Corepressor www.broad.mit.e...
Broad BIOCARTA_PDGF_PATHWAY View Gene Set 0.003663 32 0.0328 24 PDGF Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_NDKDYNAMIN_PATHWAY View Gene Set 0.004158 19 0.03445 26 Endocytotic role of NDK Phosphins and Dynamin www.broad.mit.e...
Broad BIOCARTA_PS1_PATHWAY View Gene Set 0.004286 14 0.03445 26 Presenilin action in Notch and Wnt signaling www.broad.mit.e...
Broad BIOCARTA_TPO_PATHWAY View Gene Set 0.00446 24 0.03457 28 TPO Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_CELLCYCLE_PATHWAY View Gene Set 0.005661 23 0.03854 29 Cyclins and Cell Cycle Regulation www.broad.mit.e...
Broad BIOCARTA_CALCINEURIN_PATHWAY View Gene Set 0.005372 19 0.03854 29 Effects of calcineurin in Keratinocyte Differentiation www.broad.mit.e...
Broad BIOCARTA_ERK_PATHWAY View Gene Set 0.00561 28 0.03854 29 Erk1/Erk2 Mapk Signaling pathway www.broad.mit.e...
Broad BIOCARTA_CDC42RAC_PATHWAY View Gene Set 0.005683 16 0.03854 29 Role of PI3K subunit p85 in regulation of Actin Organization and Cell Migration www.broad.mit.e...
Broad BIOCARTA_CBL_PATHWAY View Gene Set 0.006288 13 0.04044 33 CBL mediated ligand-induced downregulation of EGF receptors www.broad.mit.e...
Broad BIOCARTA_CREB_PATHWAY View Gene Set 0.006336 27 0.04044 33 Transcription factor CREB and its extracellular signals www.broad.mit.e...
Broad BIOCARTA_ATM_PATHWAY View Gene Set 0.007177 20 0.04285 35 ATM Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_SALMONELLA_PATHWAY View Gene Set 0.007306 13 0.04285 35 How does salmonella hijack a cell www.broad.mit.e...
Broad BIOCARTA_IGF1MTOR_PATHWAY View Gene Set 0.007032 20 0.04285 35 Skeletal muscle hypertrophy is regulated via AKT/mTOR pathway www.broad.mit.e...
Broad BIOCARTA_AGR_PATHWAY View Gene Set 0.008561 36 0.04889 38 Agrin in Postsynaptic Differentiation www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_CELL_CYCLE View Gene Set 4.784e-13 128 8.898e-11 1 Cell cycle www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 1.942e-10 36 1.806e-08 2 DNA replication www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 7.739e-06 138 0.0004798 3 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_ADHERENS_JUNCTION View Gene Set 1.621e-05 75 0.0007539 4 Adherens junction www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR View Gene Set 4.061e-05 23 0.001259 5 Mismatch repair www.broad.mit.e...
Broad KEGG_OOCYTE_MEIOSIS View Gene Set 3.663e-05 114 0.001259 5 Oocyte meiosis www.broad.mit.e...
Broad KEGG_LYSOSOME View Gene Set 0.0005103 122 0.01186 7 Lysosome www.broad.mit.e...
Broad KEGG_NEUROTROPHIN_SIGNALING_PATHWAY View Gene Set 0.0004469 126 0.01186 7 Neurotrophin signaling pathway www.broad.mit.e...
Broad KEGG_RIG_I_LIKE_RECEPTOR_SIGNALING_PATHWAY View Gene Set 0.0006545 71 0.01353 9 RIG-I-like receptor signaling pathway www.broad.mit.e...
Broad KEGG_DORSO_VENTRAL_AXIS_FORMATION View Gene Set 0.001405 25 0.02613 10 Dorso-ventral axis formation www.broad.mit.e...
Broad KEGG_INOSITOL_PHOSPHATE_METABOLISM View Gene Set 0.00205 54 0.02897 11 Inositol phosphate metabolism www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 0.002245 44 0.02897 11 Nucleotide excision repair www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION View Gene Set 0.00296 28 0.02897 11 Homologous recombination www.broad.mit.e...
Broad KEGG_ERBB_SIGNALING_PATHWAY View Gene Set 0.002955 87 0.02897 11 ErbB signaling pathway www.broad.mit.e...
Broad KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM View Gene Set 0.002089 76 0.02897 11 Phosphatidylinositol signaling system www.broad.mit.e...
Broad KEGG_P53_SIGNALING_PATHWAY View Gene Set 0.001836 69 0.02897 11 p53 signaling pathway www.broad.mit.e...
Broad KEGG_ENDOCYTOSIS View Gene Set 0.002777 183 0.02897 11 Endocytosis www.broad.mit.e...
Broad KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION View Gene Set 0.00283 86 0.02897 11 Progesterone-mediated oocyte maturation www.broad.mit.e...
Broad KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION View Gene Set 0.002512 68 0.02897 11 Epithelial cell signaling in Helicobacter pylori infection www.broad.mit.e...
Broad KEGG_WNT_SIGNALING_PATHWAY View Gene Set 0.003363 151 0.03127 20 Wnt signaling pathway www.broad.mit.e...
Broad KEGG_PATHOGENIC_ESCHERICHIA_COLI_INFECTION View Gene Set 0.0039 59 0.03297 21 Pathogenic Escherichia coli infection www.broad.mit.e...
Broad KEGG_ENDOMETRIAL_CANCER View Gene Set 0.003848 52 0.03297 21 Endometrial cancer www.broad.mit.e...
Broad KEGG_PROTEASOME View Gene Set 0.004093 48 0.0331 23 Proteasome www.broad.mit.e...
Broad KEGG_BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS View Gene Set 0.005342 22 0.0414 24 Biosynthesis of unsaturated fatty acids www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR View Gene Set 0.006043 35 0.04323 25 Base excision repair www.broad.mit.e...
Broad KEGG_PROSTATE_CANCER View Gene Set 0.005995 89 0.04323 25 Prostate cancer www.broad.mit.e...
Broad KEGG_SMALL_CELL_LUNG_CANCER View Gene Set 0.007042 84 0.04851 27 Small cell lung cancer www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 2.097e-25 306 9.017e-23 1 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 1.996e-14 110 4.291e-12 2 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 1.02e-13 103 1.096e-11 3 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 7.806e-14 157 1.096e-11 3 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 5.45e-12 102 4.687e-10 5 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 6.651e-12 43 4.767e-10 6 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 3.627e-11 89 2.228e-09 7 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 1.074e-10 31 5.775e-09 8 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 2.202e-10 37 1.052e-08 9 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 4.138e-09 92 1.779e-07 10 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 8.21e-09 76 3.21e-07 11 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 2.48e-08 30 8.887e-07 12 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS View Gene Set 2.027e-07 20 6.705e-06 13 Genes involved in Lagging Strand Synthesis www.broad.mit.e...
Broad REACTOME_APOPTOSIS View Gene Set 1.291e-06 129 3.965e-05 14 Genes involved in Apoptosis www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 1.468e-06 120 4.208e-05 15 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE View Gene Set 2.025e-06 71 5.442e-05 16 Genes involved in Regulation of APC/C activators between G1/S and early anaphase www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 2.789e-06 28 7.055e-05 17 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 1.407e-05 63 0.0003361 18 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 1.518e-05 33 0.0003435 19 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_POLYMERASE_SWITCHING View Gene Set 1.669e-05 14 0.0003587 20 Genes involved in Polymerase switching www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 1.928e-05 183 0.0003949 21 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S View Gene Set 2.274e-05 22 0.0004298 22 Genes involved in E2F transcriptional targets at G1/S www.broad.mit.e...
Broad REACTOME_TOLL_LIKE_RECEPTOR_3_CASCADE View Gene Set 2.299e-05 59 0.0004298 22 Genes involved in Toll Like Receptor 3 (TLR3) Cascade www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 2.399e-05 61 0.0004298 24 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE View Gene Set 3.297e-05 15 0.000567 25 Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase www.broad.mit.e...
Broad REACTOME_MAP_KINASES_ACTIVATION_IN_TLR_CASCADE View Gene Set 4.329e-05 44 0.000716 26 Genes involved in MAP kinases activation in TLR cascade www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 6.455e-05 11 0.001028 27 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ View Gene Set 7.672e-05 58 0.001178 28 Genes involved in Cyclin E associated events during G1/S transition www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A View Gene Set 8.783e-05 63 0.001302 29 Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A www.broad.mit.e...
Broad REACTOME_TRAF6_MEDIATED_INDUCTION_OF_THE_ANTIVIRAL_CYTOKINE_IFN_ALPHA_BETA_CASCADE View Gene Set 0.0001105 53 0.001583 30 Genes involved in TRAF6 Mediated Induction of the antiviral cytokine IFN-alphaeta cascade www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE View Gene Set 0.0001205 14 0.001672 31 Genes involved in Removal of the Flap Intermediate www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21 View Gene Set 0.0001386 52 0.001862 32 Genes involved in SCF(Skp2)-mediated degradation of p2721 www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT View Gene Set 0.0001714 58 0.002234 33 Genes involved in Signaling by Wnt www.broad.mit.e...
Broad REACTOME_ACTIVATED_TAK1_MEDIATES_P38_MAPK_ACTIVATION View Gene Set 0.0002021 13 0.002556 34 Genes involved in activated TAK1 mediates p38 MAPK activation www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.0002512 21 0.003086 35 Genes involved in Double-Strand Break Repair www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 0.0002652 128 0.003168 36 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER View Gene Set 0.0003015 33 0.003504 37 Genes involved in Global Genomic NER (GG-NER) www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 View Gene Set 0.0003228 48 0.003653 38 Genes involved in SCF-beta-TrCP mediated degradation of Emi1 www.broad.mit.e...
Broad REACTOME_SIGNALLING_BY_NGF View Gene Set 0.0003635 216 0.004008 39 Genes involved in Signalling by NGF www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 0.0004391 102 0.00472 40 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING View Gene Set 0.0004813 61 0.005047 41 Genes involved in Clathrin derived vesicle budding www.broad.mit.e...
Broad REACTOME_MEMBRANE_TRAFFICKING View Gene Set 0.0006095 78 0.00624 42 Genes involved in Membrane Trafficking www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 0.000714 124 0.00714 43 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC View Gene Set 0.0007342 57 0.007176 44 Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C www.broad.mit.e...
Broad REACTOME_GAB1_SIGNALOSOME View Gene Set 0.0007861 11 0.007348 45 Genes involved in Gab1 signalosome www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR View Gene Set 0.0007747 15 0.007348 45 Genes involved in Homologous Recombination Repair www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX View Gene Set 0.001026 52 0.009239 47 Genes involved in CDT1 association with the CDC6:ORC:origin complex www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53 View Gene Set 0.001031 46 0.009239 47 Genes involved in Stabilization of p53 www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 0.001198 31 0.01051 49 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_FANCONI_ANEMIA_PATHWAY View Gene Set 0.001338 15 0.01151 50 Genes involved in Fanconi Anemia pathway www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA View Gene Set 0.001563 21 0.01318 51 Genes involved in Deadenylation of mRNA www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS View Gene Set 0.001756 54 0.01452 52 Genes involved in Golgi Associated Vesicle Biogenesis www.broad.mit.e...
Broad REACTOME_NUCLEAR_EVENTS_KINASE_AND_TRANSCRIPTION_FACTOR_ACTIVATION View Gene Set 0.001984 24 0.0158 53 Genes involved in Nuclear Events (kinase and transcription factor activation) www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE View Gene Set 0.001972 43 0.0158 53 Genes involved in p53-Independent DNA Damage Response www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_EGFR View Gene Set 0.002058 48 0.01609 55 Genes involved in Signaling by EGFR www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 0.002617 29 0.01993 56 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 0.002642 32 0.01993 56 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 0.002714 84 0.02012 58 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE View Gene Set 0.002846 47 0.02074 59 Genes involved in Regulation of ornithine decarboxylase (ODC) www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G View Gene Set 0.003124 47 0.02239 60 Genes involved in Vif-mediated degradation of APOBEC3G www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 0.003348 77 0.0236 61 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 0.003589 31 0.0245 62 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 0.003551 95 0.0245 62 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 0.003824 142 0.02569 64 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_INTRINSIC_PATHWAY_FOR_APOPTOSIS View Gene Set 0.003994 29 0.02642 65 Genes involved in Intrinsic Pathway for Apoptosis www.broad.mit.e...
Broad REACTOME_ERK_MAPK_TARGETS View Gene Set 0.00419 21 0.02689 66 Genes involved in ERK/MAPK targets www.broad.mit.e...
Broad REACTOME_SEMA4D_INDUCED_CELL_MIGRATION_AND_GROWTH_CONE_COLLAPSE View Gene Set 0.004132 24 0.02689 66 Genes involved in Sema4D induced cell migration and growth-cone collapse www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX View Gene Set 0.004287 18 0.02711 68 Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex www.broad.mit.e...
Broad REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B View Gene Set 0.004377 18 0.02728 69 Genes involved in APC/C:Cdc20 mediated degradation of Cyclin B www.broad.mit.e...
Broad REACTOME_SIGNAL_ATTENUATION View Gene Set 0.004879 11 0.02997 70 Genes involved in Signal attenuation www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND View Gene Set 0.004988 10 0.03018 71 Genes involved in Removal of the Flap Intermediate from the C-strand www.broad.mit.e...
Broad REACTOME_MAPK_TARGETS_NUCLEAR_EVENTS_MEDIATED_BY_MAP_KINASES View Gene Set 0.005053 30 0.03018 71 Genes involved in MAPK targets/Nuclear events mediated by MAP kinases www.broad.mit.e...
Broad REACTOME_G_ALPHA_12_13_SIGNALLING_EVENTS View Gene Set 0.005416 55 0.0319 73 Genes involved in G alpha (12/13) signalling events www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 0.005586 103 0.03246 74 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_TOLL_RECEPTOR_CASCADES View Gene Set 0.005813 86 0.03333 75 Genes involved in Toll Receptor Cascades www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 0.006018 30 0.03405 76 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION View Gene Set 0.006703 15 0.03743 77 Genes involved in Cyclin A1 associated events during G2/M transition www.broad.mit.e...
Broad REACTOME_TRKA_SIGNALLING_FROM_THE_PLASMA_MEMBRANE View Gene Set 0.006993 103 0.03855 78 Genes involved in TRKA signalling from the plasma membrane www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 0.007136 45 0.03884 79 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_UNFOLDED_PROTEIN_RESPONSE View Gene Set 0.007519 19 0.04041 80 Genes involved in Unfolded Protein Response www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 0.007778 42 0.04129 81 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_BH3_ONLY_PROTEINS View Gene Set 0.008127 16 0.04262 82 Genes involved in Activation of BH3-only proteins www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC View Gene Set 0.008544 17 0.04374 83 Genes involved in Phosphorylation of the APC/C www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 0.008533 29 0.04374 83 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_SEMA4D_IN_SEMAPHORIN_SIGNALING View Gene Set 0.008678 29 0.0439 85 Genes involved in Sema4D in semaphorin signaling www.broad.mit.e...
Broad REACTOME_EGFR_DOWNREGULATION View Gene Set 0.009359 24 0.04626 86 Genes involved in EGFR downregulation www.broad.mit.e...
Broad REACTOME_GENES_INVOLVED_IN_APOPTOTIC_CLEAVAGE_OF_CELLULAR_PROTEINS View Gene Set 0.00933 37 0.04626 86 Genes involved in Apoptotic cleavage of cellular proteins www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION View Gene Set 0.009933 72 0.04854 88 Genes involved in Centrosome maturation www.broad.mit.e...
Broad REACTOME_NEF_MEDIATED_DOWNREGULATION_OF_MHC_CLASS_I_COMPLEX_CELL_SURFACE_EXPRESSION View Gene Set 0.01037 10 0.04955 89 Genes involved in Nef mediated downregulation of MHC classcomplex cell surface expression www.broad.mit.e...
Broad REACTOME_RHO_GTPASE_CYCLE View Gene Set 0.01031 124 0.04955 89 Genes involved in Rho GTPase cycle www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad ACATTCC MIR-1 MIR-206 View Gene Set 9.586e-17 248 2.119e-14 1 Targets of MicroRNA ACATTCC MIR-1 MIR-206 www.broad.mit.e... MIR-1... MIR-206...
Broad CAGTGTT MIR-141 MIR-200A View Gene Set 1.315e-09 262 1.453e-07 2 Targets of MicroRNA CAGTGTT MIR-141 MIR-200A www.broad.mit.e... MIR-141... MIR-200A...
Broad CAGTATT MIR-200B MIR-200C MIR-429 View Gene Set 2.388e-09 386 1.759e-07 3 Targets of MicroRNA CAGTATT MIR-200B MIR-200C MIR-429 www.broad.mit.e... MIR-200B... MIR-200C... MIR-429...
Broad TGCCTTA MIR-124A View Gene Set 5.877e-09 471 3.247e-07 4 Targets of MicroRNA TGCCTTA MIR-124A www.broad.mit.e... MIR-124A...
Broad TTGCACT MIR-130A MIR-301 MIR-130B View Gene Set 7.94e-09 335 3.51e-07 5 Targets of MicroRNA TTGCACT MIR-130A MIR-301 MIR-130B www.broad.mit.e... MIR-130A... MIR-301... MIR-130B...
Broad TTTGCAC MIR-19A MIR-19B View Gene Set 1.631e-08 440 6.007e-07 6 Targets of MicroRNA TTTGCAC MIR-19A MIR-19B www.broad.mit.e... MIR-19A... MIR-19B...
Broad GCACTTT MIR-17-5P MIR-20A MIR-106A MIR-106B MIR-20B MIR-519D View Gene Set 6.534e-08 506 2.063e-06 7 Targets of MicroRNA GCACTTT MIR-17-5P MIR-20A MIR-106A MIR-106B MIR-20B MIR-519D www.broad.mit.e... MIR-17-5P... MIR-20A... MIR-106A... MIR-106B... MIR-20B... MIR-519D...
Broad ATGTTAA MIR-302C View Gene Set 7.309e-07 206 2.019e-05 8 Targets of MicroRNA ATGTTAA MIR-302C www.broad.mit.e... MIR-302C...
Broad TTTGTAG MIR-520D View Gene Set 2.183e-06 279 5.359e-05 9 Targets of MicroRNA TTTGTAG MIR-520D www.broad.mit.e... MIR-520D...
Broad TTGCCAA MIR-182 View Gene Set 2.723e-06 274 6.017e-05 10 Targets of MicroRNA TTGCCAA MIR-182 www.broad.mit.e... MIR-182...
Broad TGCACTG MIR-148A MIR-152 MIR-148B View Gene Set 3.647e-06 252 7.328e-05 11 Targets of MicroRNA TGCACTG MIR-148A MIR-152 MIR-148B www.broad.mit.e... MIR-148A... MIR-152... MIR-148B...
Broad TGGTGCT MIR-29A MIR-29B MIR-29C View Gene Set 5.925e-06 436 0.0001091 12 Targets of MicroRNA TGGTGCT MIR-29A MIR-29B MIR-29C www.broad.mit.e... MIR-29A... MIR-29B... MIR-29C...
Broad AGCACTT MIR-93 MIR-302A MIR-302B MIR-302C MIR-302D MIR-372 MIR-373 MIR-520E MIR-520A MIR-526B MIR-520B MIR-520C MIR-520D View Gene Set 8.993e-06 281 0.000142 13 Targets of MicroRNA AGCACTT MIR-93 MIR-302A MIR-302B MIR-302C MIR-302D MIR-372 MIR-373 MIR-520E MIR-520A MIR-526B MIR-520B MIR-520C MIR-520D www.broad.mit.e... MIR-93... MIR-302A... MIR-302B... MIR-302C... MIR-302D... MIR-372... MIR-373... MIR-520E... MIR-520A... MIR-526B... MIR-520B... MIR-520C... MIR-520D...
Broad GTGTTGA MIR-505 View Gene Set 8.516e-06 85 0.000142 13 Targets of MicroRNA GTGTTGA MIR-505 www.broad.mit.e... MIR-505...
Broad TGCACTT MIR-519C MIR-519B MIR-519A View Gene Set 1.017e-05 377 0.0001499 15 Targets of MicroRNA TGCACTT MIR-519C MIR-519B MIR-519A www.broad.mit.e... MIR-519C... MIR-519B... MIR-519A...
Broad CTTTGTA MIR-524 View Gene Set 1.641e-05 375 0.0002267 16 Targets of MicroRNA CTTTGTA MIR-524 www.broad.mit.e... MIR-524...
Broad TTTTGAG MIR-373 View Gene Set 1.832e-05 189 0.0002381 17 Targets of MicroRNA TTTTGAG MIR-373 www.broad.mit.e... MIR-373...
Broad TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D View Gene Set 1.98e-05 418 0.0002431 18 Targets of MicroRNA TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D www.broad.mit.e... MIR-181A... MIR-181B... MIR-181C... MIR-181D...
Broad TAGCTTT MIR-9 View Gene Set 2.342e-05 198 0.0002724 19 Targets of MicroRNA TAGCTTT MIR-9 www.broad.mit.e... MIR-9...
Broad ATGAAGG MIR-205 View Gene Set 3.153e-05 128 0.0003484 20 Targets of MicroRNA ATGAAGG MIR-205 www.broad.mit.e... MIR-205...
Broad TGCTGCT MIR-15A MIR-16 MIR-15B MIR-195 MIR-424 MIR-497 View Gene Set 4.421e-05 512 0.00046 21 Targets of MicroRNA TGCTGCT MIR-15A MIR-16 MIR-15B MIR-195 MIR-424 MIR-497 www.broad.mit.e... MIR-15A... MIR-16... MIR-15B... MIR-195... MIR-424... MIR-497...
Broad TGTTTAC MIR-30A-5P MIR-30C MIR-30D MIR-30B MIR-30E-5P View Gene Set 4.904e-05 492 0.00046 21 Targets of MicroRNA TGTTTAC MIR-30A-5P MIR-30C MIR-30D MIR-30B MIR-30E-5P www.broad.mit.e... MIR-30A-5P... MIR-30C... MIR-30D... MIR-30B... MIR-30E-5P...
Broad AATGTGA MIR-23A MIR-23B View Gene Set 5.003e-05 356 0.00046 21 Targets of MicroRNA AATGTGA MIR-23A MIR-23B www.broad.mit.e... MIR-23A... MIR-23B...
Broad GTGCCTT MIR-506 View Gene Set 5.162e-05 605 0.00046 21 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad ACCATTT MIR-522 View Gene Set 5.204e-05 137 0.00046 21 Targets of MicroRNA ACCATTT MIR-522 www.broad.mit.e... MIR-522...
Broad ACCAAAG MIR-9 View Gene Set 5.614e-05 428 0.0004772 26 Targets of MicroRNA ACCAAAG MIR-9 www.broad.mit.e... MIR-9...
Broad CAGCTTT MIR-320 View Gene Set 0.000106 220 0.0008677 27 Targets of MicroRNA CAGCTTT MIR-320 www.broad.mit.e... MIR-320...
Broad CAGCAGG MIR-370 View Gene Set 0.0001329 128 0.001049 28 Targets of MicroRNA CAGCAGG MIR-370 www.broad.mit.e... MIR-370...
Broad AAGCACT MIR-520F View Gene Set 0.0001865 198 0.001414 29 Targets of MicroRNA AAGCACT MIR-520F www.broad.mit.e... MIR-520F...
Broad AAGGGAT MIR-188 View Gene Set 0.0001919 65 0.001414 29 Targets of MicroRNA AAGGGAT MIR-188 www.broad.mit.e... MIR-188...
Broad TCCAGAT MIR-516-5P View Gene Set 0.0002402 93 0.001712 31 Targets of MicroRNA TCCAGAT MIR-516-5P www.broad.mit.e... MIR-516-5P...
Broad GCACCTT MIR-18A MIR-18B View Gene Set 0.000251 90 0.001733 32 Targets of MicroRNA GCACCTT MIR-18A MIR-18B www.broad.mit.e... MIR-18A... MIR-18B...
Broad CACTTTG MIR-520G MIR-520H View Gene Set 0.0002721 206 0.001769 33 Targets of MicroRNA CACTTTG MIR-520G MIR-520H www.broad.mit.e... MIR-520G... MIR-520H...
Broad TTTGCAG MIR-518A-2 View Gene Set 0.0002664 174 0.001769 33 Targets of MicroRNA TTTGCAG MIR-518A-2 www.broad.mit.e... MIR-518A-2...
Broad TGTGTGA MIR-377 View Gene Set 0.0003286 162 0.002075 35 Targets of MicroRNA TGTGTGA MIR-377 www.broad.mit.e... MIR-377...
Broad TTGGGAG MIR-150 View Gene Set 0.0003446 65 0.002115 36 Targets of MicroRNA TTGGGAG MIR-150 www.broad.mit.e... MIR-150...
Broad AACATTC MIR-409-3P View Gene Set 0.0003588 115 0.002143 37 Targets of MicroRNA AACATTC MIR-409-3P www.broad.mit.e... MIR-409-3P...
Broad ACTTTAT MIR-142-5P View Gene Set 0.0003839 250 0.002233 38 Targets of MicroRNA ACTTTAT MIR-142-5P www.broad.mit.e... MIR-142-5P...
Broad GTACTGT MIR-101 View Gene Set 0.0004095 221 0.00232 39 Targets of MicroRNA GTACTGT MIR-101 www.broad.mit.e... MIR-101...
Broad TGTATGA MIR-485-3P View Gene Set 0.0004722 116 0.002609 40 Targets of MicroRNA TGTATGA MIR-485-3P www.broad.mit.e... MIR-485-3P...
Broad ACTGAAA MIR-30A-3P MIR-30E-3P View Gene Set 0.0005233 165 0.00282 41 Targets of MicroRNA ACTGAAA MIR-30A-3P MIR-30E-3P www.broad.mit.e... MIR-30A-3P... MIR-30E-3P...
Broad GGGACCA MIR-133A MIR-133B View Gene Set 0.0005826 173 0.003066 42 Targets of MicroRNA GGGACCA MIR-133A MIR-133B www.broad.mit.e... MIR-133A... MIR-133B...
Broad AAGCCAT MIR-135A MIR-135B View Gene Set 0.000631 283 0.003243 43 Targets of MicroRNA AAGCCAT MIR-135A MIR-135B www.broad.mit.e... MIR-135A... MIR-135B...
Broad AAAGGGA MIR-204 MIR-211 View Gene Set 0.0008773 191 0.004406 44 Targets of MicroRNA AAAGGGA MIR-204 MIR-211 www.broad.mit.e... MIR-204... MIR-211...
Broad ACACTGG MIR-199A MIR-199B View Gene Set 0.001119 134 0.005477 45 Targets of MicroRNA ACACTGG MIR-199A MIR-199B www.broad.mit.e... MIR-199A... MIR-199B...
Broad ACTGCCT MIR-34B View Gene Set 0.00114 190 0.005477 45 Targets of MicroRNA ACTGCCT MIR-34B www.broad.mit.e... MIR-34B...
Broad ACACTAC MIR-142-3P View Gene Set 0.001473 110 0.006927 47 Targets of MicroRNA ACACTAC MIR-142-3P www.broad.mit.e... MIR-142-3P...
Broad CTTGTAT MIR-381 View Gene Set 0.001611 167 0.007122 48 Targets of MicroRNA CTTGTAT MIR-381 www.broad.mit.e... MIR-381...
Broad GTGCCAA MIR-96 View Gene Set 0.0016 265 0.007122 48 Targets of MicroRNA GTGCCAA MIR-96 www.broad.mit.e... MIR-96...
Broad GGCACTT MIR-519E View Gene Set 0.001575 108 0.007122 48 Targets of MicroRNA GGCACTT MIR-519E www.broad.mit.e... MIR-519E...
Broad GTGCAAT MIR-25 MIR-32 MIR-92 MIR-363 MIR-367 View Gene Set 0.001656 260 0.007141 51 Targets of MicroRNA GTGCAAT MIR-25 MIR-32 MIR-92 MIR-363 MIR-367 www.broad.mit.e... MIR-25... MIR-32... MIR-92... MIR-363... MIR-367...
Broad GGCAGTG MIR-324-3P View Gene Set 0.00168 82 0.007141 51 Targets of MicroRNA GGCAGTG MIR-324-3P www.broad.mit.e... MIR-324-3P...
Broad GTTAAAG MIR-302B View Gene Set 0.00172 58 0.007171 53 Targets of MicroRNA GTTAAAG MIR-302B www.broad.mit.e... MIR-302B...
Broad CTATGCA MIR-153 View Gene Set 0.001792 182 0.007245 54 Targets of MicroRNA CTATGCA MIR-153 www.broad.mit.e... MIR-153...
Broad TAATGTG MIR-323 View Gene Set 0.001803 135 0.007245 54 Targets of MicroRNA TAATGTG MIR-323 www.broad.mit.e... MIR-323...
Broad GTTATAT MIR-410 View Gene Set 0.001937 86 0.007645 56 Targets of MicroRNA GTTATAT MIR-410 www.broad.mit.e... MIR-410...
Broad CATGTAA MIR-496 View Gene Set 0.00202 150 0.007831 57 Targets of MicroRNA CATGTAA MIR-496 www.broad.mit.e... MIR-496...
Broad CTACCTC LET-7A LET-7B LET-7C LET-7D LET-7E LET-7F MIR-98 LET-7G LET-7I View Gene Set 0.002488 329 0.00872 58 Targets of MicroRNA CTACCTC LET-7A LET-7B LET-7C LET-7D LET-7E LET-7F MIR-98 LET-7G LET-7I www.broad.mit.e... LET-7A... LET-7B... LET-7C... LET-7D... LET-7E... LET-7F... MIR-98... LET-7G... LET-7I...
Broad TGAGATT MIR-216 View Gene Set 0.002415 90 0.00872 58 Targets of MicroRNA TGAGATT MIR-216 www.broad.mit.e... MIR-216...
Broad GGTGAAG MIR-412 View Gene Set 0.002503 49 0.00872 58 Targets of MicroRNA GGTGAAG MIR-412 www.broad.mit.e... MIR-412...
Broad ATAGGAA MIR-202 View Gene Set 0.002343 86 0.00872 58 Targets of MicroRNA ATAGGAA MIR-202 www.broad.mit.e... MIR-202...
Broad GGCACAT MIR-455 View Gene Set 0.002376 46 0.00872 58 Targets of MicroRNA GGCACAT MIR-455 www.broad.mit.e... MIR-455...
Broad ACTGTAG MIR-139 View Gene Set 0.002525 111 0.00872 58 Targets of MicroRNA ACTGTAG MIR-139 www.broad.mit.e... MIR-139...
Broad ATGTACA MIR-493 View Gene Set 0.00252 261 0.00872 58 Targets of MicroRNA ATGTACA MIR-493 www.broad.mit.e... MIR-493...
Broad AACTGAC MIR-223 View Gene Set 0.002761 84 0.009386 65 Targets of MicroRNA AACTGAC MIR-223 www.broad.mit.e... MIR-223...
Broad AGGCACT MIR-515-3P View Gene Set 0.002835 74 0.009491 66 Targets of MicroRNA AGGCACT MIR-515-3P www.broad.mit.e... MIR-515-3P...
Broad TAGGTCA MIR-192 MIR-215 View Gene Set 0.002912 37 0.009605 67 Targets of MicroRNA TAGGTCA MIR-192 MIR-215 www.broad.mit.e... MIR-192... MIR-215...
Broad CCCACAT MIR-299-3P View Gene Set 0.003222 48 0.01047 68 Targets of MicroRNA CCCACAT MIR-299-3P www.broad.mit.e... MIR-299-3P...
Broad AACTGGA MIR-145 View Gene Set 0.003424 191 0.01097 69 Targets of MicroRNA AACTGGA MIR-145 www.broad.mit.e... MIR-145...
Broad CTGTTAC MIR-194 View Gene Set 0.003519 90 0.01111 70 Targets of MicroRNA CTGTTAC MIR-194 www.broad.mit.e... MIR-194...
Broad ATAAGCT MIR-21 View Gene Set 0.003601 104 0.01121 71 Targets of MicroRNA ATAAGCT MIR-21 www.broad.mit.e... MIR-21...
Broad TTGGAGA MIR-515-5P MIR-519E View Gene Set 0.003744 120 0.01131 72 Targets of MicroRNA TTGGAGA MIR-515-5P MIR-519E www.broad.mit.e... MIR-515-5P... MIR-519E...
Broad CATTTCA MIR-203 View Gene Set 0.003787 235 0.01131 72 Targets of MicroRNA CATTTCA MIR-203 www.broad.mit.e... MIR-203...
Broad TACAATC MIR-508 View Gene Set 0.003778 55 0.01131 72 Targets of MicroRNA TACAATC MIR-508 www.broad.mit.e... MIR-508...
Broad GACTGTT MIR-212 MIR-132 View Gene Set 0.003938 134 0.0116 75 Targets of MicroRNA GACTGTT MIR-212 MIR-132 www.broad.mit.e... MIR-212... MIR-132...
Broad AGCATTA MIR-155 View Gene Set 0.0041 118 0.01192 76 Targets of MicroRNA AGCATTA MIR-155 www.broad.mit.e... MIR-155...
Broad GTTTGTT MIR-495 View Gene Set 0.004207 205 0.01208 77 Targets of MicroRNA GTTTGTT MIR-495 www.broad.mit.e... MIR-495...
Broad GAGCTGG MIR-337 View Gene Set 0.004325 133 0.01225 78 Targets of MicroRNA GAGCTGG MIR-337 www.broad.mit.e... MIR-337...
Broad ATTACAT MIR-380-3P View Gene Set 0.005002 87 0.01399 79 Targets of MicroRNA ATTACAT MIR-380-3P www.broad.mit.e... MIR-380-3P...
Broad CACTGTG MIR-128A MIR-128B View Gene Set 0.005455 276 0.01493 80 Targets of MicroRNA CACTGTG MIR-128A MIR-128B www.broad.mit.e... MIR-128A... MIR-128B...
Broad CACCAGC MIR-138 View Gene Set 0.005471 173 0.01493 80 Targets of MicroRNA CACCAGC MIR-138 www.broad.mit.e... MIR-138...
Broad ACTGCAG MIR-17-3P View Gene Set 0.006107 88 0.01646 82 Targets of MicroRNA ACTGCAG MIR-17-3P www.broad.mit.e... MIR-17-3P...
Broad CAGGTCC MIR-492 View Gene Set 0.007261 48 0.01933 83 Targets of MicroRNA CAGGTCC MIR-492 www.broad.mit.e... MIR-492...
Broad ATACTGT MIR-144 View Gene Set 0.00761 173 0.02002 84 Targets of MicroRNA ATACTGT MIR-144 www.broad.mit.e... MIR-144...
Broad ATATGCA MIR-448 View Gene Set 0.007715 184 0.02006 85 Targets of MicroRNA ATATGCA MIR-448 www.broad.mit.e... MIR-448...
Broad ACATATC MIR-190 View Gene Set 0.007951 50 0.02043 86 Targets of MicroRNA ACATATC MIR-190 www.broad.mit.e... MIR-190...
Broad GCTTGAA MIR-498 View Gene Set 0.008871 96 0.02254 87 Targets of MicroRNA GCTTGAA MIR-498 www.broad.mit.e... MIR-498...
Broad AGGAGTG MIR-483 View Gene Set 0.009104 57 0.02286 88 Targets of MicroRNA AGGAGTG MIR-483 www.broad.mit.e... MIR-483...
Broad ACAACTT MIR-382 View Gene Set 0.009914 64 0.02462 89 Targets of MicroRNA ACAACTT MIR-382 www.broad.mit.e... MIR-382...
Broad TCATCTC MIR-143 View Gene Set 0.01089 126 0.02674 90 Targets of MicroRNA TCATCTC MIR-143 www.broad.mit.e... MIR-143...
Broad CTCTAGA MIR-526C MIR-518F MIR-526A View Gene Set 0.01123 40 0.02726 91 Targets of MicroRNA CTCTAGA MIR-526C MIR-518F MIR-526A www.broad.mit.e... MIR-526C... MIR-518F... MIR-526A...
Broad CTTTGCA MIR-527 View Gene Set 0.01256 198 0.03017 92 Targets of MicroRNA CTTTGCA MIR-527 www.broad.mit.e... MIR-527...
Broad CCTGCTG MIR-214 View Gene Set 0.01288 194 0.03062 93 Targets of MicroRNA CCTGCTG MIR-214 www.broad.mit.e... MIR-214...
Broad GGCCAGT MIR-193A MIR-193B View Gene Set 0.01392 81 0.03238 94 Targets of MicroRNA GGCCAGT MIR-193A MIR-193B www.broad.mit.e... MIR-193A... MIR-193B...
Broad CTAGGAA MIR-384 View Gene Set 0.01383 53 0.03238 94 Targets of MicroRNA CTAGGAA MIR-384 www.broad.mit.e... MIR-384...
Broad ACTACCT MIR-196A MIR-196B View Gene Set 0.0142 116 0.03269 96 Targets of MicroRNA ACTACCT MIR-196A MIR-196B www.broad.mit.e... MIR-196A... MIR-196B...
Broad ATGCTGG MIR-338 View Gene Set 0.01472 94 0.03353 97 Targets of MicroRNA ATGCTGG MIR-338 www.broad.mit.e... MIR-338...
Broad GAGCCTG MIR-484 View Gene Set 0.01499 87 0.03379 98 Targets of MicroRNA GAGCCTG MIR-484 www.broad.mit.e... MIR-484...
Broad AATGGAG MIR-136 View Gene Set 0.01528 62 0.03411 99 Targets of MicroRNA AATGGAG MIR-136 www.broad.mit.e... MIR-136...
Broad AGCTCCT MIR-28 View Gene Set 0.01812 78 0.04005 100 Targets of MicroRNA AGCTCCT MIR-28 www.broad.mit.e... MIR-28...
Broad ATAACCT MIR-154 View Gene Set 0.01854 51 0.04057 101 Targets of MicroRNA ATAACCT MIR-154 www.broad.mit.e... MIR-154...
Broad TACTTGA MIR-26A MIR-26B View Gene Set 0.01937 258 0.04197 102 Targets of MicroRNA TACTTGA MIR-26A MIR-26B www.broad.mit.e... MIR-26A... MIR-26B...
Broad GTGACTT MIR-224 View Gene Set 0.02006 135 0.04305 103 Targets of MicroRNA GTGACTT MIR-224 www.broad.mit.e... MIR-224...
Broad ATGTTTC MIR-494 View Gene Set 0.02103 136 0.04468 104 Targets of MicroRNA ATGTTTC MIR-494 www.broad.mit.e... MIR-494...
Broad CAAGGAT MIR-362 View Gene Set 0.02211 53 0.04654 105 Targets of MicroRNA CAAGGAT MIR-362 www.broad.mit.e... MIR-362...
Broad GAGCCAG MIR-149 View Gene Set 0.0225 125 0.04691 106 Targets of MicroRNA GAGCCAG MIR-149 www.broad.mit.e... MIR-149...
Broad GTGCCAT MIR-183 View Gene Set 0.02333 152 0.04819 107 Targets of MicroRNA GTGCCAT MIR-183 www.broad.mit.e... MIR-183...
Broad CTCTGGA MIR-520A MIR-525 View Gene Set 0.0242 128 0.04953 108 Targets of MicroRNA CTCTGGA MIR-520A MIR-525 www.broad.mit.e... MIR-520A... MIR-525...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 3.422e-09 580 2.105e-06 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$E2F_03 View Gene Set 8.456e-09 171 2.6e-06 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6_01 View Gene Set 5.833e-08 167 1.097e-05 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02 View Gene Set 7.134e-08 784 1.097e-05 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad V$E2F_Q4_01 View Gene Set 1.926e-07 171 2.073e-05 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01 View Gene Set 2.022e-07 830 2.073e-05 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6 View Gene Set 2.559e-06 2120 0.0002248 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad KCCGNSWTTT_UNKNOWN View Gene Set 7.534e-06 76 0.0005149 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KCCGNSWTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad TMTCGCGANR_UNKNOWN View Gene Set 7.013e-06 100 0.0005149 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TMTCGCGANR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6_01 View Gene Set 8.69e-06 177 0.0005345 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F4DP1_01 View Gene Set 4.531e-05 174 0.002322 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad TGCGCANK_UNKNOWN View Gene Set 4.457e-05 361 0.002322 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGCGCANK. Motif does not match any known transcription factor www.broad.mit.e...
Broad KTGGYRSGAA_UNKNOWN View Gene Set 5.063e-05 53 0.002395 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KTGGYRSGAA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 6.377e-05 167 0.002755 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F1_Q4_01 View Gene Set 6.72e-05 167 0.002755 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$SOX9_B1 View Gene Set 9.12e-05 183 0.003506 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNAACAATRGNN which matches annotation for SOX9: SRY (sex determining region Y)-box 9 (campomelic dysplasia autosomal sex-reversal) www.broad.mit.e...
Broad V$E2F_Q3 View Gene Set 0.0001044 162 0.003631 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01 View Gene Set 0.0001063 122 0.003631 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad V$E2F_02 View Gene Set 0.0001337 169 0.004327 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.0001413 289 0.004346 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F_Q3_01 View Gene Set 0.0001605 171 0.0047 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 0.0002149 169 0.005507 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 0.0002149 169 0.005507 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 0.0002149 169 0.005507 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F1DP1RB_01 View Gene Set 0.0003602 168 0.00886 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN View Gene Set 0.0005348 130 0.01265 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$YY1_02 View Gene Set 0.0008133 168 0.01853 27 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNCGGCCATCTTGNCTSNW which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F1_Q3_01 View Gene Set 0.001222 188 0.02683 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGGCGCGRAANNGNM which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad GCGNNANTTCC_UNKNOWN View Gene Set 0.001437 85 0.03048 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGNNANTTCC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q4 View Gene Set 0.001926 178 0.03929 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad TCCATTKW_UNKNOWN View Gene Set 0.001981 181 0.03929 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCATTKW. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ARNT_02 View Gene Set 0.002565 179 0.0493 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNRTCACGTGAYNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GNF2_CCNA2 View Gene Set 1.07e-23 62 4.569e-21 1 Neighborhood of CCNA2 www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 1.172e-22 62 2.502e-20 2 Neighborhood of PCNA www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 9.977e-22 82 1.42e-19 3 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 3.133e-20 56 2.862e-18 4 Neighborhood of CDC2 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 3.351e-20 75 2.862e-18 4 Neighborhood of SMC4L1 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 1.422e-19 56 1.012e-17 6 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 2.631e-18 52 1.493e-16 7 Neighborhood of CDC20 www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 2.797e-18 50 1.493e-16 7 Neighborhood of MCM4 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 3.642e-18 53 1.728e-16 9 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 2.639e-17 43 1.127e-15 10 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 4.711e-17 57 1.829e-15 11 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 2.67e-15 45 9.5e-14 12 Neighborhood of CKS2 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 6.574e-15 36 2.159e-13 13 Neighborhood of RRM2 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 3.958e-14 46 1.207e-12 14 Neighborhood of BUB1B www.broad.mit.e...
Broad GNF2_TTK View Gene Set 5.458e-14 34 1.554e-12 15 Neighborhood of TTK www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 6.653e-14 35 1.775e-12 16 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 9.605e-14 51 2.413e-12 17 Neighborhood of MCM5 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 1.475e-13 37 3.498e-12 18 Neighborhood of CENPE www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 3.586e-13 49 8.059e-12 19 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 1.4e-12 30 2.99e-11 20 Neighborhood of SMC2L1 www.broad.mit.e...
Broad GCM_RAN View Gene Set 1.934e-11 160 3.932e-10 21 Neighborhood of RAN www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 2.236e-11 276 4.34e-10 22 Neighborhood of GNB1 www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 3.519e-11 25 6.533e-10 23 Neighborhood of BUB1 www.broad.mit.e...
Broad GCM_UBE2N View Gene Set 4.592e-11 125 8.169e-10 24 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 4.397e-10 256 7.51e-09 25 Neighborhood of BUB3 www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 6.27e-10 143 1.006e-08 26 Neighborhood of RAB10 www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 6.363e-10 28 1.006e-08 26 Neighborhood of H2AFX www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 6.628e-10 38 1.011e-08 28 Neighborhood of RFC3 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 1.055e-09 210 1.502e-08 29 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 1.022e-09 26 1.502e-08 29 Neighborhood of MKI67 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 1.173e-09 45 1.616e-08 31 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 1.718e-09 316 2.293e-08 32 Neighborhood of RAD23A www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 2.24e-09 36 2.899e-08 33 Neighborhood of CKS1B www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 2.835e-09 149 3.56e-08 34 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 3.754e-09 137 4.579e-08 35 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 4.13e-09 45 4.899e-08 36 Neighborhood of DEK www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 5.416e-09 256 6.25e-08 37 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 8.415e-09 61 9.456e-08 38 Neighborhood of BUB1B www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 9.455e-09 138 1.035e-07 39 Neighborhood of MYST2 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 1.805e-08 26 1.926e-07 40 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 2.13e-08 69 2.218e-07 41 Neighborhood of SP3 www.broad.mit.e...
Broad GCM_NCAM1 View Gene Set 3.265e-08 111 3.32e-07 42 Neighborhood of NCAM1 www.broad.mit.e...
Broad MORF_RAB5A View Gene Set 3.945e-08 83 3.917e-07 43 Neighborhood of RAB5A www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 1.187e-07 58 1.126e-06 44 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 1.176e-07 170 1.126e-06 44 Neighborhood of RPA2 www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 1.272e-07 220 1.181e-06 46 Neighborhood of DDB1 www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 1.498e-07 150 1.361e-06 47 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 2.188e-07 179 1.946e-06 48 Neighborhood of RAB1A www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 2.888e-07 175 2.516e-06 49 Neighborhood of SKP1A www.broad.mit.e...
Broad GCM_ZNF198 View Gene Set 3.017e-07 98 2.576e-06 50 Neighborhood of ZNF198 www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 4.762e-07 105 3.987e-06 51 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 4.976e-07 202 4.086e-06 52 Neighborhood of PRKAG1 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 5.471e-07 120 4.407e-06 53 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 6.722e-07 173 5.231e-06 54 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_DEK View Gene Set 6.738e-07 229 5.231e-06 54 Neighborhood of DEK www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 6.947e-07 178 5.297e-06 56 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 7.659e-07 58 5.738e-06 57 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 8.591e-07 157 6.325e-06 58 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 1.238e-06 95 8.959e-06 59 Neighborhood of MTA1 www.broad.mit.e...
Broad GCM_NF2 View Gene Set 1.404e-06 235 9.99e-06 60 Neighborhood of NF2 www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 2.024e-06 222 1.417e-05 61 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 2.377e-06 90 1.637e-05 62 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 2.736e-06 155 1.826e-05 63 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 2.698e-06 54 1.826e-05 63 Neighborhood of RBBP6 www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 3.229e-06 256 2.121e-05 65 Neighborhood of CSNK2B www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 3.639e-06 144 2.355e-05 66 Neighborhood of MAP4K4 www.broad.mit.e...
Broad GCM_DFFA View Gene Set 5.23e-06 100 3.307e-05 67 Neighborhood of DFFA www.broad.mit.e...
Broad GCM_RAP2A View Gene Set 5.266e-06 30 3.307e-05 67 Neighborhood of RAP2A www.broad.mit.e...
Broad GCM_RBM8A View Gene Set 5.433e-06 64 3.362e-05 69 Neighborhood of RBM8A www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 6.69e-06 29 4.081e-05 70 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 7.369e-06 48 4.432e-05 71 Neighborhood of BAG5 www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 9.084e-06 73 5.387e-05 72 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 1.002e-05 55 5.783e-05 73 Neighborhood of RPA1 www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 9.887e-06 98 5.783e-05 73 Neighborhood of PAPSS1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 1.234e-05 49 7.025e-05 75 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 1.405e-05 47 7.895e-05 76 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GNF2_DDX5 View Gene Set 1.794e-05 54 9.946e-05 77 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 1.887e-05 100 0.0001033 78 Neighborhood of PSMC2 www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 2.024e-05 133 0.0001094 79 Neighborhood of PRKAR1A www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 2.315e-05 76 0.0001236 80 Neighborhood of MBD4 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 2.585e-05 196 0.0001363 81 Neighborhood of RAC1 www.broad.mit.e...
Broad GCM_IL6ST View Gene Set 3.246e-05 48 0.000169 82 Neighborhood of IL6ST www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 3.343e-05 159 0.000172 83 Neighborhood of RAD23B www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 3.81e-05 94 0.0001914 84 Neighborhood of RAD54L www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 3.809e-05 68 0.0001914 84 Neighborhood of BMPR2 www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 4.011e-05 52 0.0001991 86 Neighborhood of KPNB1 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 5.318e-05 71 0.0002581 87 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 5.389e-05 247 0.0002581 87 Neighborhood of SOD1 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 5.439e-05 94 0.0002581 87 Neighborhood of RAF1 www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 5.381e-05 20 0.0002581 87 Neighborhood of RPA1 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 5.759e-05 65 0.0002702 91 Neighborhood of CCNF www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 6.321e-05 93 0.0002913 92 Neighborhood of PTPN11 www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 6.345e-05 36 0.0002913 92 Neighborhood of MLH1 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 6.648e-05 162 0.000302 94 Neighborhood of PSMC1 www.broad.mit.e...
Broad GCM_CALM1 View Gene Set 7.072e-05 91 0.0003179 95 Neighborhood of CALM1 www.broad.mit.e...
Broad GCM_SUFU View Gene Set 7.202e-05 62 0.0003204 96 Neighborhood of SUFU www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 7.461e-05 30 0.0003284 97 Neighborhood of MSH6 www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 8.252e-05 88 0.0003596 98 Neighborhood of PPP6C www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 9.319e-05 110 0.0004019 99 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 9.977e-05 98 0.000426 100 Neighborhood of RFC1 www.broad.mit.e...
Broad GCM_GSTA4 View Gene Set 0.0001069 57 0.0004519 101 Neighborhood of GSTA4 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 0.0001161 63 0.000486 102 Neighborhood of CDK2 www.broad.mit.e...
Broad GCM_MAP1B View Gene Set 0.0001353 55 0.000561 103 Neighborhood of MAP1B www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 0.000142 67 0.0005832 104 Neighborhood of CDC16 www.broad.mit.e...
Broad GCM_ERBB2IP View Gene Set 0.0001585 57 0.0006446 105 Neighborhood of ERBB2IP www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 0.0001747 52 0.0007039 106 Neighborhood of DDX5 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 0.0002007 39 0.0008008 107 Neighborhood of DENR www.broad.mit.e...
Broad MORF_ATRX View Gene Set 0.0002292 185 0.000906 108 Neighborhood of ATRX www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 0.0002372 85 0.0009293 109 Neighborhood of HDAC1 www.broad.mit.e...
Broad GCM_GSPT1 View Gene Set 0.0002403 129 0.0009329 110 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 0.0002533 50 0.0009743 111 Neighborhood of SNRP70 www.broad.mit.e...
Broad MORF_AATF View Gene Set 0.0002624 179 0.001 112 Neighborhood of AATF www.broad.mit.e...
Broad GCM_PTK2 View Gene Set 0.0002707 126 0.001023 113 Neighborhood of PTK2 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 0.0003224 59 0.001208 114 Neighborhood of CBFB www.broad.mit.e...
Broad GCM_MLL View Gene Set 0.000349 130 0.001296 115 Neighborhood of MLL www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 0.0005224 79 0.001923 116 Neighborhood of UBE2N www.broad.mit.e...
Broad GCM_HBP1 View Gene Set 0.0005281 54 0.001927 117 Neighborhood of HBP1 www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 0.0005646 220 0.002043 118 Neighborhood of EIF3S2 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 0.0005701 33 0.002046 119 Neighborhood of PPP6C www.broad.mit.e...
Broad MORF_RAB6A View Gene Set 0.0005885 63 0.002094 120 Neighborhood of RAB6A www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 0.0006215 32 0.002193 121 Neighborhood of ELAC2 www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 0.0006792 72 0.002377 122 Neighborhood of APEX1 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.0006897 30 0.002394 123 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 0.0007158 52 0.002465 124 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 0.0007575 57 0.002567 125 Neighborhood of TERF1 www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 0.000755 119 0.002567 125 Neighborhood of AP3D1 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 0.0008431 145 0.002835 127 Neighborhood of G22P1 www.broad.mit.e...
Broad GCM_DLG1 View Gene Set 0.0009535 63 0.003181 128 Neighborhood of DLG1 www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 0.001102 145 0.003649 129 Neighborhood of PPP1CA www.broad.mit.e...
Broad GCM_MAX View Gene Set 0.001165 28 0.003828 130 Neighborhood of MAX www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 0.001181 197 0.003848 131 Neighborhood of AP2M1 www.broad.mit.e...
Broad MORF_RAP1A View Gene Set 0.001264 122 0.004086 132 Neighborhood of RAP1A www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.001273 131 0.004086 132 Neighborhood of TPR www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 0.001456 26 0.00464 134 Neighborhood of CBFB www.broad.mit.e...
Broad MORF_PHB View Gene Set 0.001558 112 0.004928 135 Neighborhood of PHB www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 0.001635 28 0.005133 136 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.001686 24 0.005254 137 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.001718 99 0.005317 138 Neighborhood of TERF2IP www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 0.001819 29 0.005589 139 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 0.002064 175 0.006296 140 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 0.002384 61 0.00722 141 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_TDG View Gene Set 0.003021 23 0.009086 142 Neighborhood of TDG www.broad.mit.e...
Broad GNF2_RAN View Gene Set 0.003074 78 0.00918 143 Neighborhood of RAN www.broad.mit.e...
Broad MORF_UNG View Gene Set 0.003107 65 0.009214 144 Neighborhood of UNG www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 0.00365 71 0.01075 145 Neighborhood of BMI1 www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 0.00373 174 0.01091 146 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.004442 44 0.0129 147 Neighborhood of UBE2A www.broad.mit.e...
Broad MORF_IKBKG View Gene Set 0.004806 119 0.01387 148 Neighborhood of IKBKG www.broad.mit.e...
Broad MORF_XPC View Gene Set 0.005623 55 0.01611 149 Neighborhood of XPC www.broad.mit.e...
Broad MORF_DAP View Gene Set 0.006301 72 0.01794 150 Neighborhood of DAP www.broad.mit.e...
Broad MORF_PSMF1 View Gene Set 0.006502 151 0.01836 151 Neighborhood of PSMF1 www.broad.mit.e...
Broad GCM_AQP4 View Gene Set 0.006534 43 0.01836 151 Neighborhood of AQP4 www.broad.mit.e...
Broad MORF_PTPN9 View Gene Set 0.007793 54 0.02175 153 Neighborhood of PTPN9 www.broad.mit.e...
Broad MORF_FANCG View Gene Set 0.007998 148 0.02218 154 Neighborhood of FANCG www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.008392 33 0.02312 155 Neighborhood of SMARCC1 www.broad.mit.e...
Broad MORF_PTEN View Gene Set 0.009288 80 0.02542 156 Neighborhood of PTEN www.broad.mit.e...
Broad GCM_BECN1 View Gene Set 0.009523 59 0.0259 157 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 0.01008 93 0.02724 158 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 0.0105 76 0.02821 159 Neighborhood of CCNI www.broad.mit.e...
Broad GNF2_NS View Gene Set 0.01135 35 0.03029 160 Neighborhood of NS www.broad.mit.e...
Broad GNF2_CD53 View Gene Set 0.01226 54 0.03252 161 Neighborhood of CD53 www.broad.mit.e...
Broad GNF2_PTPRC View Gene Set 0.01393 60 0.03671 162 Neighborhood of PTPRC www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 0.01451 39 0.03801 163 Neighborhood of SIRT2 www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 0.01462 62 0.03806 164 Neighborhood of CUL1 www.broad.mit.e...
Broad MORF_PPP5C View Gene Set 0.01518 81 0.03929 165 Neighborhood of PPP5C www.broad.mit.e...
Broad MORF_EI24 View Gene Set 0.01536 136 0.03951 166 Neighborhood of EI24 www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 0.01591 34 0.04069 167 Neighborhood of RAF1 www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 0.01628 108 0.04138 168 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 0.01717 41 0.04337 169 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_REV3L View Gene Set 0.01752 52 0.044 170 Neighborhood of REV3L www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 0.01773 208 0.04427 171 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_PPP2R5E View Gene Set 0.01812 76 0.04497 172 Neighborhood of PPP2R5E www.broad.mit.e...
Broad GCM_PPM1D View Gene Set 0.01859 22 0.04588 173 Neighborhood of PPM1D www.broad.mit.e...
Broad GNF2_CASP8 View Gene Set 0.0193 24 0.04735 174 Neighborhood of CASP8 www.broad.mit.e...
Broad MORF_CSNK1D View Gene Set 0.01952 65 0.04764 175 Neighborhood of CSNK1D www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_54 View Gene Set 7.045e-31 242 3.198e-28 1 Genes in module_54 www.broad.mit.e...
Broad module_252 View Gene Set 1.693e-22 224 3.844e-20 2 Genes in module_252 www.broad.mit.e...
Broad module_98 View Gene Set 1.107e-19 375 1.501e-17 3 Genes in module_98 www.broad.mit.e...
Broad module_198 View Gene Set 1.322e-19 288 1.501e-17 3 Genes in module_198 www.broad.mit.e...
Broad module_158 View Gene Set 3.49e-15 41 3.169e-13 5 Genes in module_158 www.broad.mit.e...
Broad module_125 View Gene Set 1.254e-14 42 9.488e-13 6 Genes in module_125 www.broad.mit.e...
Broad module_3 View Gene Set 1.369e-13 374 8.876e-12 7 Genes in module_3 www.broad.mit.e...
Broad module_57 View Gene Set 5.241e-11 54 2.974e-09 8 Genes in module_57 www.broad.mit.e...
Broad module_244 View Gene Set 1.093e-10 182 5.515e-09 9 Genes in module_244 www.broad.mit.e...
Broad module_124 View Gene Set 3.515e-10 92 1.596e-08 10 Genes in module_124 www.broad.mit.e...
Broad module_18 View Gene Set 4.712e-10 434 1.945e-08 11 Genes in module_18 www.broad.mit.e...
Broad module_197 View Gene Set 1.242e-09 170 4.699e-08 12 Genes in module_197 www.broad.mit.e...
Broad module_8 View Gene Set 3.257e-09 403 1.138e-07 13 Genes in module_8 www.broad.mit.e...
Broad module_17 View Gene Set 7.269e-09 351 2.357e-07 14 Genes in module_17 www.broad.mit.e...
Broad module_403 View Gene Set 1.003e-08 44 3.037e-07 15 Genes in module_403 www.broad.mit.e...
Broad module_52 View Gene Set 1.655e-07 415 4.696e-06 16 Genes in module_52 www.broad.mit.e...
Broad module_72 View Gene Set 1.861e-07 293 4.97e-06 17 Genes in module_72 www.broad.mit.e...
Broad module_15 View Gene Set 2.142e-07 347 5.403e-06 18 Genes in module_15 www.broad.mit.e...
Broad module_451 View Gene Set 2.874e-07 29 6.867e-06 19 Genes in module_451 www.broad.mit.e...
Broad module_239 View Gene Set 4.435e-07 112 1.007e-05 20 Genes in module_239 www.broad.mit.e...
Broad module_126 View Gene Set 8.747e-06 173 0.0001891 21 Genes in module_126 www.broad.mit.e...
Broad module_86 View Gene Set 1.474e-05 43 0.0003042 22 Genes in module_86 www.broad.mit.e...
Broad module_182 View Gene Set 3.137e-05 94 0.0006094 23 Genes in module_182 www.broad.mit.e...
Broad module_308 View Gene Set 3.222e-05 66 0.0006094 23 Genes in module_308 www.broad.mit.e...
Broad module_97 View Gene Set 4.373e-05 91 0.0007353 25 Genes in module_97 www.broad.mit.e...
Broad module_315 View Gene Set 4.154e-05 15 0.0007353 25 Genes in module_315 www.broad.mit.e...
Broad module_397 View Gene Set 4.367e-05 114 0.0007353 25 Genes in module_397 www.broad.mit.e...
Broad module_127 View Gene Set 6.346e-05 26 0.0009935 28 Genes in module_127 www.broad.mit.e...
Broad module_303 View Gene Set 6.193e-05 27 0.0009935 28 Genes in module_303 www.broad.mit.e...
Broad module_189 View Gene Set 7.414e-05 23 0.001122 30 Genes in module_189 www.broad.mit.e...
Broad module_277 View Gene Set 0.0001051 48 0.00154 31 Genes in module_277 www.broad.mit.e...
Broad module_16 View Gene Set 0.000129 495 0.00183 32 Genes in module_16 www.broad.mit.e...
Broad module_53 View Gene Set 0.0001447 389 0.00199 33 Genes in module_53 www.broad.mit.e...
Broad module_318 View Gene Set 0.0001904 28 0.002542 34 Genes in module_318 www.broad.mit.e...
Broad module_491 View Gene Set 0.0002118 74 0.002747 35 Genes in module_491 www.broad.mit.e...
Broad module_568 View Gene Set 0.0002492 70 0.003143 36 Genes in module_568 www.broad.mit.e...
Broad module_356 View Gene Set 0.0003183 141 0.003906 37 Genes in module_356 www.broad.mit.e...
Broad module_195 View Gene Set 0.0003693 138 0.004413 38 Genes in module_195 www.broad.mit.e...
Broad module_159 View Gene Set 0.0004944 81 0.005756 39 Genes in module_159 www.broad.mit.e...
Broad module_147 View Gene Set 0.0005979 102 0.006786 40 Genes in module_147 www.broad.mit.e...
Broad module_105 View Gene Set 0.0006255 192 0.006926 41 Genes in module_105 www.broad.mit.e...
Broad module_320 View Gene Set 0.0008411 19 0.009092 42 Genes in module_320 www.broad.mit.e...
Broad module_261 View Gene Set 0.001021 91 0.01066 43 Genes in module_261 www.broad.mit.e...
Broad module_358 View Gene Set 0.001033 72 0.01066 43 Genes in module_358 www.broad.mit.e...
Broad module_222 View Gene Set 0.001249 22 0.0126 45 Genes in module_222 www.broad.mit.e...
Broad module_283 View Gene Set 0.001542 7 0.01522 46 Genes in module_283 www.broad.mit.e...
Broad module_168 View Gene Set 0.001978 22 0.0191 47 Genes in module_168 www.broad.mit.e...
Broad module_90 View Gene Set 0.002204 17 0.02085 48 Genes in module_90 www.broad.mit.e...
Broad module_118 View Gene Set 0.002978 393 0.02705 49 Genes in module_118 www.broad.mit.e...
Broad module_323 View Gene Set 0.002979 54 0.02705 49 Genes in module_323 www.broad.mit.e...
Broad module_552 View Gene Set 0.003275 18 0.02916 51 Genes in module_552 www.broad.mit.e...
Broad module_257 View Gene Set 0.003427 137 0.02935 52 Genes in module_257 www.broad.mit.e...
Broad module_493 View Gene Set 0.003407 60 0.02935 52 Genes in module_493 www.broad.mit.e...
Broad module_485 View Gene Set 0.003766 44 0.03166 54 Genes in module_485 www.broad.mit.e...
Broad module_525 View Gene Set 0.004031 61 0.03327 55 Genes in module_525 www.broad.mit.e...
Broad module_144 View Gene Set 0.004991 8 0.0399 56 Genes in module_144 www.broad.mit.e...
Broad module_237 View Gene Set 0.00501 50 0.0399 56 Genes in module_237 www.broad.mit.e...
Broad module_421 View Gene Set 0.005381 23 0.04212 58 Genes in module_421 www.broad.mit.e...
Broad module_206 View Gene Set 0.005927 139 0.04561 59 Genes in module_206 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 2.577e-16 1197 2.126e-13 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 4.407e-14 1623 1.818e-11 2 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 8.067e-13 148 2.218e-10 3 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 4.057e-12 304 8.367e-10 4 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 3.438e-11 167 5.673e-09 5 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 5.291e-11 187 7.275e-09 6 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 3.058e-10 253 3.604e-08 7 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 4.691e-10 83 4.838e-08 8 Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place. www.broad.mit.e...
Broad MITOSIS View Gene Set 8.705e-10 81 7.979e-08 9 Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 2.64e-09 458 2.178e-07 10 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 4.676e-09 159 3.507e-07 11 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 5.812e-09 197 3.996e-07 12 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad INTRACELLULAR_TRANSPORT View Gene Set 1.216e-08 271 7.717e-07 13 Genes annotated by the GO term GO:0046907. The directed movement of substances within a cell. www.broad.mit.e...
Broad REGULATION_OF_CELL_CYCLE View Gene Set 2.147e-08 176 1.265e-06 14 Genes annotated by the GO term GO:0051726. Any process that modulates the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad M_PHASE View Gene Set 3.619e-08 111 1.99e-06 15 Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 6.233e-08 801 3.214e-06 16 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 7.189e-08 123 3.295e-06 17 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad ESTABLISHMENT_OF_CELLULAR_LOCALIZATION View Gene Set 7.142e-08 342 3.295e-06 17 Genes annotated by the GO term GO:0051649. The directed movement of a substance or cellular entity such as a protein complex or organelle to a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad CELLULAR_LOCALIZATION View Gene Set 1.705e-07 360 7.404e-06 19 Genes annotated by the GO term GO:0051641. The processes by which a substance or cellular entity such as a protein complex or organelle is transported to and/or maintained in a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 9.546e-07 738 3.938e-05 20 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 1.488e-06 117 5.847e-05 21 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 2.365e-06 101 8.87e-05 22 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 3.686e-06 601 0.0001322 23 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION View Gene Set 5.042e-06 31 0.0001733 24 Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad PROTEIN_TRANSPORT View Gene Set 5.299e-06 150 0.0001749 25 Genes annotated by the GO term GO:0015031. The directed movement of proteins into out of within or between cells. www.broad.mit.e...
Broad INTERPHASE View Gene Set 6.491e-06 68 0.000206 26 Genes annotated by the GO term GO:0051325. Progression through interphase the stage of cell cycle between successive rounds of chromosome segregation. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad INTRACELLULAR_PROTEIN_TRANSPORT View Gene Set 7.211e-06 138 0.0002203 27 Genes annotated by the GO term GO:0006886. The directed movement of proteins in a cell including the movement of proteins between specific compartments or structures within a cell such as organelles of a eukaryotic cell. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 1.233e-05 625 0.0003632 28 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075 View Gene Set 1.515e-05 47 0.000431 29 Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 1.65e-05 779 0.0004538 30 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 1.936e-05 623 0.0005151 31 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 2.562e-05 555 0.0006605 32 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 2.83e-05 767 0.0006763 33 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad MACROMOLECULE_LOCALIZATION View Gene Set 2.768e-05 228 0.0006763 33 Genes annotated by the GO term GO:0033036. The processes by which a macromolecule is transported to or maintained in a specific location. www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION View Gene Set 2.869e-05 55 0.0006763 33 Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. www.broad.mit.e...
Broad NUCLEAR_TRANSPORT View Gene Set 4.264e-05 84 0.000902 36 Genes annotated by the GO term GO:0051169. The directed movement of substances into out of or within the nucleus. www.broad.mit.e...
Broad PROTEIN_TARGETING View Gene Set 4.11e-05 103 0.000902 36 Genes annotated by the GO term GO:0006605. The process of targeting specific proteins to particular membrane-bound subcellular organelles. Usually requires an organelle specific protein sequence motif. www.broad.mit.e...
Broad REGULATION_OF_MITOSIS View Gene Set 4.024e-05 40 0.000902 36 Genes annotated by the GO term GO:0007088. Any process that modulates the frequency rate or extent of mitosis. www.broad.mit.e...
Broad NUCLEOCYTOPLASMIC_TRANSPORT View Gene Set 4.264e-05 83 0.000902 36 Genes annotated by the GO term GO:0006913. The directed movement of molecules between the nucleus and the cytoplasm. www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE View Gene Set 5.398e-05 72 0.001099 40 Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin. www.broad.mit.e...
Broad INTERPHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 5.46e-05 62 0.001099 40 Genes annotated by the GO term GO:0051329. Progression through interphase the stage of cell cycle between successive rounds of mitosis. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 6.922e-05 457 0.001359 42 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad PROTEIN_LOCALIZATION View Gene Set 7.082e-05 207 0.001359 42 Genes annotated by the GO term GO:0008104. The processes by which a protein is transported to or maintained in a specific location. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 9.26e-05 452 0.001736 44 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad MICROTUBULE_BASED_PROCESS View Gene Set 9.934e-05 80 0.001821 45 Genes annotated by the GO term GO:0007017. Any cellular process that depends upon or alters the microtubule cytoskeleton that part of the cytoskeleton comprising microtubules and their associated proteins. www.broad.mit.e...
Broad CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001221 206 0.002191 46 Genes annotated by the GO term GO:0007010. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 0.0001283 660 0.002252 47 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION View Gene Set 0.0001406 23 0.002417 48 Genes annotated by the GO term GO:0051056. Any process that modulates the frequency rate or extent of small GTPase mediated signal transduction. www.broad.mit.e...
Broad REGULATION_OF_TRANSFERASE_ACTIVITY View Gene Set 0.0001751 156 0.002948 49 Genes annotated by the GO term GO:0051338. Any process that modulates the frequency rate or extent of transferase activity the catalysis of the transfer of a group e.g. a methyl group glycosyl group acyl group phosphorus-containing or other groups from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. www.broad.mit.e...
Broad I_KAPPAB_KINASE_NF_KAPPAB_CASCADE View Gene Set 0.000179 107 0.002954 50 Genes annotated by the GO term GO:0007249. A series of reactions initiated by the activation of the transcription factor NF-kappaB. NF-kappaB is sequestered by the inhibitor I-kappaB and is released when I-kappaB is phosphorylated by activated I-kappaB kinase. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.000255 285 0.004124 51 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad PROTEIN_IMPORT View Gene Set 0.0002672 59 0.004239 52 Genes annotated by the GO term GO:0017038. The directed movement of proteins into a cell or organelle. www.broad.mit.e...
Broad ESTABLISHMENT_OF_PROTEIN_LOCALIZATION View Gene Set 0.0002797 183 0.004279 53 Genes annotated by the GO term GO:0045184. The directed movement of a protein to a specific location. www.broad.mit.e...
Broad SISTER_CHROMATID_SEGREGATION View Gene Set 0.0002801 17 0.004279 53 Genes annotated by the GO term GO:0000819. The process by which sister chromatids are organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad REGULATION_OF_KINASE_ACTIVITY View Gene Set 0.0003323 152 0.004984 55 Genes annotated by the GO term GO:0043549. Any process that modulates the frequency rate or extent of kinase activity the catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.0003908 449 0.005757 56 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad MITOTIC_SISTER_CHROMATID_SEGREGATION View Gene Set 0.0004964 16 0.007185 57 Genes annotated by the GO term GO:0000070. The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome composed of two sister chromatids aligns at the cell equator paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0005209 205 0.00741 58 Genes annotated by the GO term GO:0045934. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad REGULATION_OF_PROTEIN_KINASE_ACTIVITY View Gene Set 0.0007134 150 0.009976 59 Genes annotated by the GO term GO:0045859. Any process that modulates the frequency rate or extent of protein kinase activity. www.broad.mit.e...
Broad REGULATION_OF_CYCLIN_DEPENDENT_PROTEIN_KINASE_ACTIVITY View Gene Set 0.0007331 42 0.01008 60 Genes annotated by the GO term GO:0000079. Any process that modulates the frequency rate or extent of CDK activity. www.broad.mit.e...
Broad REGULATION_OF_CATALYTIC_ACTIVITY View Gene Set 0.0008822 267 0.01193 61 Genes annotated by the GO term GO:0050790. Any process that modulates the activity of an enzyme. www.broad.mit.e...
Broad BIOPOLYMER_MODIFICATION View Gene Set 0.001035 627 0.01378 62 Genes annotated by the GO term GO:0043412. The covalent alteration of one or more monomeric units in a polypeptide polynucleotide polysaccharide or other biological polymer resulting in a change in its properties. www.broad.mit.e...
Broad REGULATION_OF_I_KAPPAB_KINASE_NF_KAPPAB_CASCADE View Gene Set 0.001194 86 0.01563 63 Genes annotated by the GO term GO:0043122. Any process that modulates an I-kappaB kinase/NF-kappaB induced cascade. www.broad.mit.e...
Broad NUCLEAR_IMPORT View Gene Set 0.001373 48 0.0177 64 Genes annotated by the GO term GO:0051170. The directed movement of substances into the nucleus. www.broad.mit.e...
Broad REGULATION_OF_MOLECULAR_FUNCTION View Gene Set 0.001401 315 0.01778 65 Genes annotated by the GO term GO:0065009. Any process that modulates the frequency rate or extent of molecular functions. Molecular functions are elemental biological activities occurring at the molecular level such as catalysis or binding. www.broad.mit.e...
Broad PROTEIN_KINASE_CASCADE View Gene Set 0.00145 282 0.01813 66 Genes annotated by the GO term GO:0007243. A series of reactions mediated by protein kinases which occurs as a result of a single trigger reaction or compound. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 0.001518 147 0.01841 67 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION_EPIGENETIC View Gene Set 0.001512 30 0.01841 67 Genes annotated by the GO term GO:0040029. Any process that modulates the frequency rate or extent of gene expression; the process is mitotically or meiotically heritable or is stably self-propagated in the cytoplasm of a resting cell and does not entail a change in DNA sequence. www.broad.mit.e...
Broad DNA_PACKAGING View Gene Set 0.00154 34 0.01842 69 Genes annotated by the GO term GO:0006323. Any process by which DNA and associated proteins are formed into a compact orderly structure. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.001599 34 0.01863 70 Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. www.broad.mit.e...
Broad REGULATION_OF_ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.001604 39 0.01863 70 Genes annotated by the GO term GO:0033043. Any process that modulates the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of an organelle. www.broad.mit.e...
Broad REGULATION_OF_SIGNAL_TRANSDUCTION View Gene Set 0.001657 214 0.01887 72 Genes annotated by the GO term GO:0009966. Any process that modulates the frequency rate or extent of signal transduction. www.broad.mit.e...
Broad REGULATION_OF_RAS_PROTEIN_SIGNAL_TRANSDUCTION View Gene Set 0.00167 19 0.01887 72 Genes annotated by the GO term GO:0046578. Any process that modulates the frequency rate or extent of Ras protein signal transduction. www.broad.mit.e...
Broad GOLGI_VESICLE_TRANSPORT View Gene Set 0.001851 47 0.02063 74 Genes annotated by the GO term GO:0048193. The directed movement of substances into out of or within the Golgi apparatus mediated by vesicles. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE_CHECKPOINT View Gene Set 0.002041 21 0.02245 75 Genes annotated by the GO term GO:0007093. A signal transduction-based surveillance mechanism that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.002077 9 0.02254 76 Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION View Gene Set 0.002167 185 0.02321 77 Genes annotated by the GO term GO:0016481. Any process that stops prevents or reduces the frequency rate or extent of transcription. www.broad.mit.e...
Broad ACTIN_FILAMENT_BASED_PROCESS View Gene Set 0.002553 115 0.02674 78 Genes annotated by the GO term GO:0030029. Any cellular process that depends upon or alters the actin cytoskeleton that part of the cytoskeleton comprising actin filaments and their associated proteins. www.broad.mit.e...
Broad DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.002561 22 0.02674 78 Genes annotated by the GO term GO:0006302. The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. www.broad.mit.e...
Broad RESPONSE_TO_VIRUS View Gene Set 0.002725 48 0.0271 80 Genes annotated by the GO term GO:0009615. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus from a virus. www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT View Gene Set 0.002638 23 0.0271 80 Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_I_KAPPAB_KINASE_NF_KAPPAB_CASCADE View Gene Set 0.002751 80 0.0271 80 Genes annotated by the GO term GO:0043123. Any process that activates or increases the frequency rate or extent of an I-kappaB kinase/NF-kappaB induced cascade. www.broad.mit.e...
Broad RESPONSE_TO_STRESS View Gene Set 0.002726 495 0.0271 80 Genes annotated by the GO term GO:0006950. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually but not necessarily exogenous (e.g. temperature humidity ionizing radiation). www.broad.mit.e...
Broad ACTIN_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.002759 105 0.0271 80 Genes annotated by the GO term GO:0030036. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.002913 629 0.02749 85 Genes annotated by the GO term GO:0048523. Any process that stops prevents or reduces the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad PROTEIN_POLYMERIZATION View Gene Set 0.003048 19 0.02749 85 Genes annotated by the GO term GO:0051258. The process of creating protein polymers compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. www.broad.mit.e...
Broad PROTEIN_IMPORT_INTO_NUCLEUS View Gene Set 0.002886 46 0.02749 85 Genes annotated by the GO term GO:0006606. The directed movement of a protein from the cytoplasm to the nucleus. www.broad.mit.e...
Broad ACTIN_FILAMENT_POLYMERIZATION View Gene Set 0.002991 14 0.02749 85 Genes annotated by the GO term GO:0030041. Assembly of actin filaments by the addition of actin monomers to a filament. www.broad.mit.e...
Broad CHROMATIN_MODIFICATION View Gene Set 0.003005 50 0.02749 85 Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure. www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.002877 10 0.02749 85 Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad INTRACELLULAR_SIGNALING_CASCADE View Gene Set 0.002953 648 0.02749 85 Genes annotated by the GO term GO:0007242. A series of reactions within the cell that occur as a result of a single trigger reaction or compound. www.broad.mit.e...
Broad CHROMATIN_ASSEMBLY_OR_DISASSEMBLY View Gene Set 0.003076 26 0.02749 85 Genes annotated by the GO term GO:0006333. The formation or destruction of chromatin structures. www.broad.mit.e...
Broad G1_S_TRANSITION_OF_MITOTIC_CELL_CYCLE View Gene Set 0.003099 27 0.02749 85 Genes annotated by the GO term GO:0000082. Progression from G1 phase to S phase of the mitotic cell cycle. www.broad.mit.e...
Broad DNA_REPLICATION_INITIATION View Gene Set 0.003417 15 0.02968 94 Genes annotated by the GO term GO:0006270. The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix the recruitment of DNA polymerases and the initiation of polymerase action. www.broad.mit.e...
Broad PROTEIN_MODIFICATION_PROCESS View Gene Set 0.003391 610 0.02968 94 Genes annotated by the GO term GO:0006464. The covalent alteration of one or more amino acids occurring in proteins peptides and nascent polypeptides (co-translational post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). www.broad.mit.e...
Broad DNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION View Gene Set 0.003856 34 0.03313 96 Genes annotated by the GO term GO:0042770. A cascade of processes induced by the detection of DNA damage within a cell. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 0.004273 659 0.03635 97 Genes annotated by the GO term GO:0048519. Any process that stops prevents or reduces the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad CHROMATIN_REMODELING View Gene Set 0.004384 23 0.03653 98 Genes annotated by the GO term GO:0006338. Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. www.broad.mit.e...
Broad REGULATION_OF_DNA_REPLICATION View Gene Set 0.004364 19 0.03653 98 Genes annotated by the GO term GO:0006275. Any process that modulates the frequency rate or extent of DNA replication. www.broad.mit.e...
Broad POST_GOLGI_VESICLE_MEDIATED_TRANSPORT View Gene Set 0.004595 14 0.03791 100 Genes annotated by the GO term GO:0006892. The directed movement of substances from the Golgi to other parts of the cell including organelles and the plasma membrane mediated by small transport vesicles. www.broad.mit.e...
Broad DNA_RECOMBINATION View Gene Set 0.004739 47 0.03871 101 Genes annotated by the GO term GO:0006310. The processes by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment intrachromosomal recombination or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation conjugation transduction or F-duction. www.broad.mit.e...
Broad VIRAL_GENOME_REPLICATION View Gene Set 0.005406 21 0.04372 102 Genes annotated by the GO term GO:0019079. Any process involved directly in viral genome replication including viral nucleotide metabolism. www.broad.mit.e...
Broad POST_TRANSLATIONAL_PROTEIN_MODIFICATION View Gene Set 0.005607 462 0.04491 103 Genes annotated by the GO term GO:0043687. The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.005793 644 0.04596 104 Genes annotated by the GO term GO:0048522. Any process that activates or increases the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad PROTEIN_TARGETING_TO_MEMBRANE View Gene Set 0.006273 11 0.04929 105 Genes annotated by the GO term GO:0006612. The process of directing proteins towards a membrane using signals contained within the protein. www.broad.mit.e...
Broad SECRETORY_PATHWAY View Gene Set 0.006349 82 0.04936 106 Genes annotated by the GO term GO:0045045. The pathway along which proteins and other substances are moved around and out of the cell. After synthesis on the ribosomes of the endoplasmic reticulum (ER) completed polypeptide chains are moved to the Golgi complex and subsequently sorted to various destinations. Proteins synthesized and sorted in the secretory pathway include not only those that are secreted from the cell but also enzymes and other resident proteins in the lumen of the ER Golgi and lysosomes as well as integral proteins in the membranes of these organelles and the plasma membrane. www.broad.mit.e...
Broad CELL_PROLIFERATION_GO_0008283 View Gene Set 0.006402 501 0.04936 106 Genes annotated by the GO term GO:0008283. The multiplication or reproduction of cells resulting in the expansion of a cell population. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 1.33e-30 1353 3.098e-28 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad ORGANELLE_PART View Gene Set 9.877e-19 1149 9.98e-17 2 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 1.285e-18 1144 9.98e-17 2 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 3.095e-15 543 1.803e-13 4 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 7.36e-14 122 3.43e-12 5 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 1.766e-11 95 6.858e-10 6 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 2.635e-11 613 7.674e-10 7 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 2.635e-11 613 7.674e-10 7 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 4.265e-10 2054 1.104e-08 9 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 1.442e-09 365 3.36e-08 10 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 1.727e-09 266 3.657e-08 11 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 7.993e-09 434 1.433e-07 12 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 7.993e-09 434 1.433e-07 12 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 1.453e-06 202 2.417e-05 14 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 2.982e-06 146 4.631e-05 15 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad REPLICATION_FORK View Gene Set 3.319e-06 18 4.833e-05 16 Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION View Gene Set 3.891e-06 31 5.333e-05 17 Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 4.136e-06 53 5.353e-05 18 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad SPINDLE View Gene Set 6.623e-06 37 8.122e-05 19 Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 1.743e-05 914 0.000203 20 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad CHROMATIN View Gene Set 3.046e-05 35 0.0003226 21 Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome. www.broad.mit.e...
Broad KINETOCHORE View Gene Set 3.035e-05 25 0.0003226 21 Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 3.606e-05 799 0.0003653 23 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 6.306e-05 213 0.0006122 24 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad CYTOSKELETON View Gene Set 8.637e-05 359 0.000805 25 Genes annotated by the GO term GO:0005856. Any of the various filamentous elements that form the internal framework of cells and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments microfilaments microtubules the microtrabecular lattice and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions including cellular movement cell division endocytosis and movement of organelles. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 0.0001344 71 0.001205 26 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad GOLGI_APPARATUS View Gene Set 0.0001794 222 0.001493 27 Genes annotated by the GO term GO:0005794. A compound membranous cytoplasmic organelle of eukaryotic cells consisting of flattened ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle while in invertebrates and plants where they are known usually as dictyosomes there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis in the vicinity of the cis face trans in the vicinity of the trans face and medial lying between the cis and trans regions. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 0.0001794 48 0.001493 27 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad NUCLEAR_CHROMATIN View Gene Set 0.0001949 14 0.001566 29 Genes annotated by the GO term GO:0000790. The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus. www.broad.mit.e...
Broad CYTOSKELETAL_PART View Gene Set 0.0002082 231 0.001617 30 Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice. www.broad.mit.e...
Broad MICROTUBULE View Gene Set 0.0002321 31 0.001744 31 Genes annotated by the GO term GO:0005874. Any of the long generally straight hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation e.g. in the spindle. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 0.0002738 1350 0.001994 32 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM View Gene Set 0.0002965 282 0.002093 33 Genes annotated by the GO term GO:0005783. The irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. The ER takes two forms rough (or granular) with ribosomes adhering to the outer surface and smooth (with no ribosomes attached). www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART View Gene Set 0.0005073 40 0.003476 34 Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART View Gene Set 0.000634 33 0.004221 35 Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad GOLGI_MEMBRANE View Gene Set 0.0008195 43 0.005304 36 Genes annotated by the GO term GO:0000139. The lipid bilayer surrounding any of the compartments of the Golgi apparatus. www.broad.mit.e...
Broad SPINDLE_MICROTUBULE View Gene Set 0.0008925 15 0.005621 37 Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 0.00103 32 0.006314 38 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad PORE_COMPLEX View Gene Set 0.001328 34 0.007733 39 Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 0.001316 290 0.007733 39 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad GOLGI_STACK View Gene Set 0.001564 13 0.008887 41 Genes annotated by the GO term GO:0005795. The set of thin flattened membrane-bounded compartments called cisternae that form the central portion of the Golgi complex. The stack usually comprises cis medial and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack. www.broad.mit.e...
Broad CHROMATIN_REMODELING_COMPLEX View Gene Set 0.001892 17 0.0105 42 Genes annotated by the GO term GO:0016585. Any complex that mediates dynamic changes in eukaryotic chromatin. www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.002684 9 0.01455 43 Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA. www.broad.mit.e...
Broad MICROTUBULE_ASSOCIATED_COMPLEX View Gene Set 0.002872 47 0.01521 44 Genes annotated by the GO term GO:0005875. Any multimeric complex connected to a microtubule. www.broad.mit.e...
Broad UBIQUITIN_LIGASE_COMPLEX View Gene Set 0.003081 26 0.01595 45 Genes annotated by the GO term GO:0000151. A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex. www.broad.mit.e...
Broad PML_BODY View Gene Set 0.003789 13 0.01919 46 Genes annotated by the GO term GO:0016605. A class of nuclear body; they react against SP100 auto-antibodies (PML promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection. www.broad.mit.e...
Broad INTEGRAL_TO_ORGANELLE_MEMBRANE View Gene Set 0.003972 49 0.01969 47 Genes annotated by the GO term GO:0031301. Penetrating at least one phospholipid bilayer of an organelle membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad NUCLEAR_PORE View Gene Set 0.004321 29 0.02097 48 Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined. www.broad.mit.e...
Broad INTEGRATOR_COMPLEX View Gene Set 0.005156 13 0.02403 49 Genes annotated by the GO term GO:0032039. A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II. www.broad.mit.e...
Broad INTRINSIC_TO_ORGANELLE_MEMBRANE View Gene Set 0.005054 51 0.02403 49 Genes annotated by the GO term GO:0031300. Located in an organelle membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad SPINDLE_POLE View Gene Set 0.006437 17 0.02941 51 Genes annotated by the GO term GO:0000922. Either of the ends of a spindle where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules spindle microtubules and astral microtubules. www.broad.mit.e...
Broad NUCLEAR_REPLICATION_FORK View Gene Set 0.007073 10 0.03169 52 Genes annotated by the GO term GO:0043596. The Y-shaped region of a nuclear replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 0.007502 116 0.03298 53 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad NUCLEAR_UBIQUITIN_LIGASE_COMPLEX View Gene Set 0.008508 11 0.03671 54 Genes annotated by the GO term GO:0000152. A ubiquitin ligase complex found in the nucleus. www.broad.mit.e...
Broad GOLGI_APPARATUS_PART View Gene Set 0.008673 98 0.03674 55 Genes annotated by the GO term GO:0044431. Any constituent part of the Golgi apparatus a compound membranous cytoplasmic organelle of eukaryotic cells consisting of flattened ribosome-free vesicles arranged in a more or less regular stack. www.broad.mit.e...
Broad ENDOSOME View Gene Set 0.008898 64 0.03702 56 Genes annotated by the GO term GO:0005768. A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad HYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDES View Gene Set 3.943e-05 224 0.002231 1 Genes annotated by the GO term GO:0016817. Catalysis of the hydrolysis of any acid anhydride. www.broad.mit.e...
Broad PHOSPHOTRANSFERASE_ACTIVITY_ALCOHOL_GROUP_AS_ACCEPTOR View Gene Set 3.203e-05 326 0.002231 1 Genes annotated by the GO term GO:0016773. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). www.broad.mit.e...
Broad KINASE_ACTIVITY View Gene Set 2.61e-05 359 0.002231 1 Genes annotated by the GO term GO:0016301. Catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad NUCLEOSIDE_TRIPHOSPHATASE_ACTIVITY View Gene Set 2.654e-05 208 0.002231 1 Genes annotated by the GO term GO:0017111. Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate. www.broad.mit.e...
Broad GTPASE_ACTIVITY View Gene Set 3.707e-05 98 0.002231 1 Genes annotated by the GO term GO:0003924. Catalysis of the reaction: GTP + H2O = GDP + phosphate. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS View Gene Set 3.699e-05 414 0.002231 1 Genes annotated by the GO term GO:0016772. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad PYROPHOSPHATASE_ACTIVITY View Gene Set 3.276e-05 222 0.002231 1 Genes annotated by the GO term GO:0016462. Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups leaving one phosphate on each of the two fragments. www.broad.mit.e...
Broad PROTEIN_KINASE_ACTIVITY View Gene Set 5.135e-05 278 0.002259 8 Genes annotated by the GO term GO:0004672. Catalysis of the phosphorylation of an amino acid residue in a protein usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. www.broad.mit.e...
Broad PROTEIN_SERINE_THREONINE_KINASE_ACTIVITY View Gene Set 4.744e-05 200 0.002259 8 Genes annotated by the GO term GO:0004674. Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate. www.broad.mit.e...
Broad TUBULIN_BINDING View Gene Set 6.027e-05 46 0.002387 10 Genes annotated by the GO term GO:0015631. Interacting selectively with monomeric or multimeric forms of tubulin including microtubules. www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING View Gene Set 0.0001564 34 0.005631 11 Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA. www.broad.mit.e...
Broad NUCLEOTIDE_BINDING View Gene Set 0.0002435 218 0.006851 12 Genes annotated by the GO term GO:0000166. Interacting selectively with a nucleotide any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING View Gene Set 0.0002595 300 0.006851 12 Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription. www.broad.mit.e...
Broad CHROMATIN_BINDING View Gene Set 0.0002396 32 0.006851 12 Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase. www.broad.mit.e...
Broad PURINE_RIBONUCLEOTIDE_BINDING View Gene Set 0.0002443 200 0.006851 12 Genes annotated by the GO term GO:0032555. Interacting selectively with a purine ribonucleotide any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. www.broad.mit.e...
Broad PURINE_NUCLEOTIDE_BINDING View Gene Set 0.0003453 205 0.008546 16 Genes annotated by the GO term GO:0017076. Interacting selectively with purine nucleotides any compound consisting of a purine nucleoside esterified with (ortho)phosphate. www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING View Gene Set 0.0007114 55 0.01657 17 Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding. www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY View Gene Set 0.0008112 222 0.01785 18 Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself. www.broad.mit.e...
Broad ENZYME_BINDING View Gene Set 0.001026 175 0.02084 19 Genes annotated by the GO term GO:0019899. Interacting selectively with any enzyme. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 0.001052 587 0.02084 19 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...
Broad EXONUCLEASE_ACTIVITY View Gene Set 0.001986 18 0.03744 21 Genes annotated by the GO term GO:0004527. Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15302935 View Gene Set 4.862e-34 773 1.219e-30 1 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 1.065e-24 504 1.336e-21 2 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 3.281e-11 210 2.742e-08 3 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 2.202e-10 37 1.38e-07 4 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 5.246e-08 391 2.63e-05 5 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 15231748 View Gene Set 9.835e-08 519 3.082e-05 6 Functional proteomics mapping of a human signaling pathway. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 8.652e-08 242 3.082e-05 6 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 15635413 View Gene Set 9.796e-08 421 3.082e-05 6 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 3.124e-07 102 8.703e-05 9 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 5.127e-07 317 0.0001285 10 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 6.409e-07 22 0.0001461 11 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 9.809e-07 31 0.0002049 12 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 1.224e-06 748 0.0002281 13 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 15232106 View Gene Set 1.365e-06 30 0.0002281 13 Self-assembling protein microarrays. www.ncbi.nlm.ni...
PMID 8619474 View Gene Set 1.32e-06 534 0.0002281 13 A "double adaptor" method for improved shotgun library construction. www.ncbi.nlm.ni...
PMID 9110174 View Gene Set 1.644e-06 528 0.0002576 16 Large-scale concatenation cDNA sequencing. www.ncbi.nlm.ni...
PMID 12539042 View Gene Set 2.066e-06 45 0.0002981 17 HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophages. www.ncbi.nlm.ni...
PMID 9822671 View Gene Set 2.14e-06 10 0.0002981 17 Replication factor C disengages from proliferating cell nuclear antigen (PCNA) upon sliding clamp formation and PCNA itself tethers DNA polymerase delta to DNA. www.ncbi.nlm.ni...
PMID 12447867 View Gene Set 3.142e-06 11 0.0004146 19 Genetic polymorphisms in interferon pathway and response to interferon treatment in hepatitis B patients: A pilot study. www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 3.471e-06 522 0.0004346 20 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 16381901 View Gene Set 3.641e-06 720 0.0004346 20 The LIFEdb database in 2006. www.ncbi.nlm.ni...
PMID 15489336 View Gene Set 3.824e-06 722 0.0004358 22 From ORFeome to biology: a functional genomics pipeline. www.ncbi.nlm.ni...
PMID 15778465 View Gene Set 5.98e-06 91 0.0006518 23 Targeted proteomic analysis of 14-3-3 sigma a p53 effector commonly silenced in cancer. www.ncbi.nlm.ni...
PMID 17148452 View Gene Set 6.856e-06 87 0.0007162 24 Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 9.686e-06 22 0.0009618 25 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...
PMID 15226314 View Gene Set 9.975e-06 20 0.0009618 25 Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 1.349e-05 23 0.001253 27 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 12614612 View Gene Set 1.46e-05 19 0.001262 28 Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. www.ncbi.nlm.ni...
PMID 9111189 View Gene Set 1.417e-05 16 0.001262 28 Which DNA polymerases are used for DNA-repair in eukaryotes? www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 1.518e-05 51 0.001268 30 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 17274640 View Gene Set 1.793e-05 30 0.00145 31 A limited screen for protein interactions reveals new roles for protein phosphatase 1 in cell cycle control and apoptosis. www.ncbi.nlm.ni...
PMID 12388589 View Gene Set 2.52e-05 17 0.001971 32 A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. www.ncbi.nlm.ni...
PMID 12838346 View Gene Set 2.619e-05 68 0.001971 32 Human and mouse proteases: a comparative genomic approach. www.ncbi.nlm.ni...
PMID 20522537 View Gene Set 2.673e-05 73 0.001971 32 Variation within DNA repair pathway genes and risk of multiple sclerosis. www.ncbi.nlm.ni...
PMID 12168954 View Gene Set 3.237e-05 225 0.002318 35 Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. www.ncbi.nlm.ni...
PMID 11285280 View Gene Set 4.092e-05 62 0.002773 36 Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. www.ncbi.nlm.ni...
PMID 19738611 View Gene Set 4.017e-05 39 0.002773 36 Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis. www.ncbi.nlm.ni...
PMID 15144186 View Gene Set 4.25e-05 133 0.002804 38 Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. www.ncbi.nlm.ni...
PMID 12930902 View Gene Set 4.439e-05 11 0.002854 39 The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA. www.ncbi.nlm.ni...
PMID 16341674 View Gene Set 4.85e-05 392 0.003039 40 Transcriptome analysis of human gastric cancer. www.ncbi.nlm.ni...
PMID 20085707 View Gene Set 5.021e-05 42 0.00307 41 Aire's partners in the molecular control of immunological tolerance. www.ncbi.nlm.ni...
PMID 17192257 View Gene Set 5.224e-05 78 0.003118 42 Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. www.ncbi.nlm.ni...
PMID 11078522 View Gene Set 5.634e-05 12 0.003202 43 The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes. www.ncbi.nlm.ni...
PMID 12837248 View Gene Set 5.517e-05 22 0.003202 43 The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome. www.ncbi.nlm.ni...
PMID 9734811 View Gene Set 5.747e-05 102 0.003202 43 Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. www.ncbi.nlm.ni...
PMID 12045100 View Gene Set 5.955e-05 18 0.003245 46 DNA replication in eukaryotic cells. www.ncbi.nlm.ni...
PMID 19237606 View Gene Set 6.153e-05 84 0.003282 47 Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk. www.ncbi.nlm.ni...
PMID 9891079 View Gene Set 6.721e-05 15 0.00351 48 Cyclin E associates with BAF155 and BRG1 components of the mammalian SWI-SNF complex and alters the ability of BRG1 to induce growth arrest. www.ncbi.nlm.ni...
PMID 15782174 View Gene Set 7.104e-05 31 0.003634 49 Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 7.603e-05 68 0.003738 50 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 8662825 View Gene Set 7.523e-05 10 0.003738 50 Cyclin-dependent kinases are inactivated by a combination of p21 and Thr-14/Tyr-15 phosphorylation after UV-induced DNA damage. www.ncbi.nlm.ni...
PMID 9155018 View Gene Set 8.138e-05 14 0.003923 52 MNK1 a new MAP kinase-activated protein kinase isolated by a novel expression screening method for identifying protein kinase substrates. www.ncbi.nlm.ni...
PMID 11734557 View Gene Set 8.604e-05 12 0.00407 53 SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones. www.ncbi.nlm.ni...
PMID 12036888 View Gene Set 0.0001001 17 0.004611 54 Evidence for distinct pathomechanisms in B-cell chronic lymphocytic leukemia and mantle cell lymphoma by quantitative expression analysis of cell cycle and apoptosis-associated genes. www.ncbi.nlm.ni...
PMID 12791267 View Gene Set 0.0001012 50 0.004611 54 Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase. www.ncbi.nlm.ni...
PMID 11095689 View Gene Set 0.0001073 17 0.004805 56 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. www.ncbi.nlm.ni...
PMID 10078207 View Gene Set 0.0001158 10 0.005091 57 Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. www.ncbi.nlm.ni...
PMID 12665591 View Gene Set 0.0001433 10 0.006195 58 Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner. www.ncbi.nlm.ni...
PMID 18950845 View Gene Set 0.0001568 88 0.006661 59 Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. www.ncbi.nlm.ni...
PMID 18270339 View Gene Set 0.0002249 57 0.009094 60 Comprehensive analysis of DNA repair gene variants and risk of meningioma. www.ncbi.nlm.ni...
PMID 19571811 View Gene Set 0.0002216 15 0.009094 60 Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. www.ncbi.nlm.ni...
PMID 20516191 View Gene Set 0.0002224 12 0.009094 60 A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). www.ncbi.nlm.ni...
PMID 11784859 View Gene Set 0.0002429 16 0.009665 63 Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1). www.ncbi.nlm.ni...
PMID 16387653 View Gene Set 0.0002619 42 0.01026 64 ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation. www.ncbi.nlm.ni...
PMID 7494303 View Gene Set 0.0002789 12 0.01076 65 Mutational analysis of cell cycle arrest nuclear localization and virion packaging of human immunodeficiency virus type 1 Vpr. www.ncbi.nlm.ni...
PMID 20226869 View Gene Set 0.0002934 25 0.01115 66 Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations. www.ncbi.nlm.ni...
PMID 15951569 View Gene Set 0.0003314 75 0.01224 67 Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. www.ncbi.nlm.ni...
PMID 19584272 View Gene Set 0.000332 11 0.01224 67 Modification of ovarian cancer risk by BRCA1/2-interacting genes in a multicenter cohort of BRCA1/2 mutation carriers. www.ncbi.nlm.ni...
PMID 11473323 View Gene Set 0.0003556 13 0.01292 69 RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes. www.ncbi.nlm.ni...
PMID 19536649 View Gene Set 0.000387 15 0.01386 70 The Fanconi anemia family of genes and its correlation with breast cancer susceptibility and breast cancer features. www.ncbi.nlm.ni...
PMID 8895581 View Gene Set 0.0004423 12 0.01562 71 Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. www.ncbi.nlm.ni...
PMID 10747897 View Gene Set 0.0004941 10 0.01721 72 Stress-induced activation of protein kinase CK2 by direct interaction with p38 mitogen-activated protein kinase. www.ncbi.nlm.ni...
PMID 20056645 View Gene Set 0.0005535 32 0.01901 73 Association of mitotic regulation pathway polymorphisms with pancreatic cancer risk and outcome. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 0.0005888 693 0.01995 74 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 11076863 View Gene Set 0.0006277 794 0.02071 75 DNA cloning using in vitro site-specific recombination. www.ncbi.nlm.ni...
PMID 15504738 View Gene Set 0.0006224 19 0.02071 75 Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling. www.ncbi.nlm.ni...
PMID 10436018 View Gene Set 0.00067 15 0.021 77 The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells. www.ncbi.nlm.ni...
PMID 17158748 View Gene Set 0.0006514 13 0.021 77 The histone variant mH2A1.1 interferes with transcription by down-regulating PARP-1 enzymatic activity. www.ncbi.nlm.ni...
PMID 17363900 View Gene Set 0.0006648 14 0.021 77 The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. www.ncbi.nlm.ni...
PMID 17456004 View Gene Set 0.0006615 17 0.021 77 Selective translational repression of truncated proteins from frameshift mutation-derived mRNAs in tumors. www.ncbi.nlm.ni...
PMID 14743216 View Gene Set 0.0007416 132 0.02267 81 A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. www.ncbi.nlm.ni...
PMID 15029244 View Gene Set 0.0007342 57 0.02267 81 Mammalian Cdh1/Fzr mediates its own degradation. www.ncbi.nlm.ni...
PMID 9244350 View Gene Set 0.0007857 11 0.02373 83 BRCA1 proteins are transported to the nucleus in the absence of serum and splice variants BRCA1a BRCA1b are tyrosine phosphoproteins that associate with E2F cyclins and cyclin dependent kinases. www.ncbi.nlm.ni...
PMID 10231032 View Gene Set 0.0008977 103 0.02679 84 Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. www.ncbi.nlm.ni...
PMID 10470851 View Gene Set 0.00093 103 0.02711 85 Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. www.ncbi.nlm.ni...
PMID 11742988 View Gene Set 0.0009236 20 0.02711 85 APC/C-mediated destruction of the centrosomal kinase Nek2A occurs in early mitosis and depends upon a cyclin A-type D-box. www.ncbi.nlm.ni...
PMID 12231349 View Gene Set 0.000982 11 0.02798 87 Protocadherins. www.ncbi.nlm.ni...
PMID 2288909 View Gene Set 0.0009789 30 0.02798 87 Multiple genes encoding zinc finger domains are expressed in human T cells. www.ncbi.nlm.ni...
PMID 19690177 View Gene Set 0.00105 31 0.02957 89 Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk. www.ncbi.nlm.ni...
PMID 10766737 View Gene Set 0.001102 11 0.0307 90 Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression. www.ncbi.nlm.ni...
PMID 11310559 View Gene Set 0.001189 17 0.0325 91 Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha. www.ncbi.nlm.ni...
PMID 8404858 View Gene Set 0.001193 11 0.0325 91 Multiple and cooperative phosphorylation events regulate the CREM activator function. www.ncbi.nlm.ni...
PMID 15588985 View Gene Set 0.001529 50 0.04121 93 Substrate-trapping techniques in the identification of cellular PTP targets. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 0.001571 108 0.04146 94 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 19838193 View Gene Set 0.001571 31 0.04146 94 Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus. www.ncbi.nlm.ni...
PMID 14530271 View Gene Set 0.001645 16 0.04296 96 Protein profile of tax-associated complexes. www.ncbi.nlm.ni...
PMID 18377426 View Gene Set 0.001801 20 0.04655 97 Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex. www.ncbi.nlm.ni...
PMID 12859895 View Gene Set 0.001919 47 0.0491 98 Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. www.ncbi.nlm.ni...
PMID 16903783 View Gene Set 0.001939 14 0.04911 99 Role of the AP2 beta-appendage hub in recruiting partners for clathrin-coated vesicle assembly. www.ncbi.nlm.ni...
PMID 12761501 View Gene Set 0.001998 94 0.04988 100 Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. www.ncbi.nlm.ni...
PMID 15747776 View Gene Set 0.002009 14 0.04988 100 Dose-dependent transcriptome changes by metal ores on a human acute lymphoblastic leukemia cell line. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS00108 View Gene Set 1.149e-05 316 0.002111 1 PROTEIN_KINASE_ST expasy.org/pros...
Null PS00972 View Gene Set 6.894e-06 72 0.002111 1 UCH_2_1 expasy.org/pros...
Null PS50011 View Gene Set 3.168e-06 493 0.002111 1 PROTEIN_KINASE_DOM expasy.org/pros...
Null PS50102 View Gene Set 8.831e-06 229 0.002111 1 RRM expasy.org/pros...
Null PS00973 View Gene Set 2.506e-05 75 0.003684 5 UCH_2_2 expasy.org/pros...
Null PS50235 View Gene Set 4.43e-05 83 0.005427 6 UCH_2_3 expasy.org/pros...
Null PS00847 View Gene Set 0.0001116 6 0.01172 7 MCM_1 expasy.org/pros...
Null PS00107 View Gene Set 0.000179 384 0.01276 8 PROTEIN_KINASE_ATP expasy.org/pros...
Null PS01359 View Gene Set 0.0001574 72 0.01276 8 ZF_PHD_1 expasy.org/pros...
Null PS50152 View Gene Set 0.000191 5 0.01276 8 25A_SYNTH_3 expasy.org/pros...
Null PS51184 View Gene Set 0.0001803 35 0.01276 8 JMJC expasy.org/pros...
Null PS00183 View Gene Set 0.0002693 25 0.01427 12 UBIQUITIN_CONJUGAT_1 expasy.org/pros...
Null PS00411 View Gene Set 0.0002483 42 0.01427 12 KINESIN_MOTOR_DOMAIN1 expasy.org/pros...
Null PS50051 View Gene Set 0.0002718 8 0.01427 12 MCM_2 expasy.org/pros...
Null PS50016 View Gene Set 0.0003714 78 0.0182 15 ZF_PHD_2 expasy.org/pros...
Null PS51194 View Gene Set 0.0003977 113 0.01827 16 HELICASE_CTER expasy.org/pros...
Null PS50067 View Gene Set 0.0004304 46 0.01836 17 KINESIN_MOTOR_DOMAIN2 expasy.org/pros...
Null PS51192 View Gene Set 0.0004496 112 0.01836 17 HELICASE_ATP_BIND_1 expasy.org/pros...
Null PS01032 View Gene Set 0.001008 11 0.03704 19 PP2C expasy.org/pros...
Null PS50293 View Gene Set 0.001008 134 0.03704 19 TPR_REGION expasy.org/pros...
Null PS50237 View Gene Set 0.001282 29 0.04486 21 HECT expasy.org/pros...
Null PS50072 View Gene Set 0.001411 35 0.04713 22 CSA_PPIASE_2 expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:2.7.11.1 View Gene Set 0.0002147 91 0.03392 1 Non-specific serine/threonine protein kinase expasy.org/enzy...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.RBL2 View Gene Set 9.781e-05 14 0.01346 1 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.HDAC3 View Gene Set 0.0001425 12 0.01346 1 Protein-protein-interaction for HDAC3 www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 0.0002594 44 0.01634 3 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.1491938 View Gene Set 0.0004341 25 0.01763 4 Protein-protein-interaction for 1491938 www.ncbi.nlm.ni...
Null ppi.RAD51 View Gene Set 0.0004663 7 0.01763 4 Protein-protein-interaction for RAD51 www.ncbi.nlm.ni...
Null ppi.NCOA3 View Gene Set 0.0006729 19 0.0212 6 Protein-protein-interaction for NCOA3 www.ncbi.nlm.ni...
Null ppi.CTNNB1 View Gene Set 0.001175 9 0.02702 7 Protein-protein-interaction for CTNNB1 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 0.00114 11 0.02702 7 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.PRKCZ View Gene Set 0.001286 6 0.02702 7 Protein-protein-interaction for PRKCZ www.ncbi.nlm.ni...
Null ppi.SMAD3 View Gene Set 0.001478 10 0.02793 10 Protein-protein-interaction for SMAD3 www.ncbi.nlm.ni...
Null ppi.ARHGAP8 View Gene Set 0.001639 8 0.02816 11 Protein-protein-interaction for ARHGAP8 www.ncbi.nlm.ni...
Null ppi.E2F1 View Gene Set 0.001837 12 0.02893 12 Protein-protein-interaction for E2F1 www.ncbi.nlm.ni...
Null ppi.CDKN1A View Gene Set 0.002045 9 0.02973 13 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.E2F4 View Gene Set 0.002375 14 0.03206 14 Protein-protein-interaction for E2F4 www.ncbi.nlm.ni...
Null ppi.TDP2 View Gene Set 0.00363 6 0.04289 15 Protein-protein-interaction for TDP2 www.ncbi.nlm.ni...
Null ppi.MAPK3 View Gene Set 0.003631 9 0.04289 15 Protein-protein-interaction for MAPK3 www.ncbi.nlm.ni...
Null ppi.SUMO1 View Gene Set 0.004428 13 0.04923 17 Protein-protein-interaction for SUMO1 www.ncbi.nlm.ni...
Null ppi.HDAC1 View Gene Set 0.004928 7 0.04995 18 Protein-protein-interaction for HDAC1 www.ncbi.nlm.ni...
Null ppi.NMI View Gene Set 0.005022 10 0.04995 18 Protein-protein-interaction for NMI www.ncbi.nlm.ni...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 3.335e-11 236 7.661e-08 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 6.367e-07 37 0.0007313 2 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 1.856e-06 23 0.001066 3 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.51e-06 168 0.001066 3 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 2.486e-06 147 0.001142 5 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 4.141e-06 12 0.001585 6 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.TOPORS View Gene Set 8.373e-06 27 0.001956 7 Protein-protein-interaction for TOPORS www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 7.89e-06 40 0.001956 7 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.CHTF18 View Gene Set 6.489e-06 13 0.001956 7 Protein-protein-interaction for CHTF18 www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 8.514e-06 38 0.001956 7 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.MCPH1 View Gene Set 1.161e-05 17 0.002424 11 Protein-protein-interaction for MCPH1 www.ncbi.nlm.ni...
Null ppi.SKP2 View Gene Set 1.908e-05 24 0.003371 12 Protein-protein-interaction for SKP2 www.ncbi.nlm.ni...
Null ppi.H2AFY View Gene Set 1.791e-05 12 0.003371 12 Protein-protein-interaction for H2AFY www.ncbi.nlm.ni...
Null ppi.BAZ1B View Gene Set 2.224e-05 30 0.003649 14 Protein-protein-interaction for BAZ1B www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 2.472e-05 24 0.003785 15 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 3.251e-05 9 0.004393 16 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.CDC7 View Gene Set 3.163e-05 7 0.004393 16 Protein-protein-interaction for CDC7 www.ncbi.nlm.ni...
Null ppi.CLSPN View Gene Set 4.282e-05 17 0.005464 18 Protein-protein-interaction for CLSPN www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 5.352e-05 35 0.00647 19 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.RFC4 View Gene Set 8.823e-05 10 0.009283 20 Protein-protein-interaction for RFC4 www.ncbi.nlm.ni...
Null ppi.USP7 View Gene Set 8.238e-05 24 0.009283 20 Protein-protein-interaction for USP7 www.ncbi.nlm.ni...
Null ppi.BRCC3 View Gene Set 8.891e-05 22 0.009283 20 Protein-protein-interaction for BRCC3 www.ncbi.nlm.ni...
Null ppi.YWHAQ View Gene Set 0.0001026 61 0.01025 23 Protein-protein-interaction for YWHAQ www.ncbi.nlm.ni...
Null ppi.FBXO7 View Gene Set 0.0001121 10 0.01073 24 Protein-protein-interaction for FBXO7 www.ncbi.nlm.ni...
Null ppi.CASP9 View Gene Set 0.0001245 9 0.01144 25 Protein-protein-interaction for CASP9 www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 0.0001301 12 0.0115 26 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.UBE2I View Gene Set 0.0001413 62 0.01202 27 Protein-protein-interaction for UBE2I www.ncbi.nlm.ni...
Null ppi.FAN1 View Gene Set 0.0001688 13 0.01337 28 Protein-protein-interaction for FAN1 www.ncbi.nlm.ni...
Null ppi.HIST1H4A View Gene Set 0.0001636 28 0.01337 28 Protein-protein-interaction for HIST1H4A www.ncbi.nlm.ni...
Null ppi.CSNK2A1 View Gene Set 0.0001748 12 0.01338 30 Protein-protein-interaction for CSNK2A1 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 0.0001979 46 0.01466 31 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.HSP90B1 View Gene Set 0.0002081 13 0.01494 32 Protein-protein-interaction for HSP90B1 www.ncbi.nlm.ni...
Null ppi.CHAF1A View Gene Set 0.0002355 19 0.01625 33 Protein-protein-interaction for CHAF1A www.ncbi.nlm.ni...
Null ppi.MAPK3 View Gene Set 0.0002405 22 0.01625 33 Protein-protein-interaction for MAPK3 www.ncbi.nlm.ni...
Null ppi.BRIP1 View Gene Set 0.0002658 8 0.01744 35 Protein-protein-interaction for BRIP1 www.ncbi.nlm.ni...
Null ppi.CDKN1A View Gene Set 0.0002913 14 0.01761 36 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.SNW1 View Gene Set 0.0002816 32 0.01761 36 Protein-protein-interaction for SNW1 www.ncbi.nlm.ni...
Null ppi.RFC1 View Gene Set 0.0002862 18 0.01761 36 Protein-protein-interaction for RFC1 www.ncbi.nlm.ni...
Null ppi.UBC View Gene Set 0.0003153 293 0.01857 39 Protein-protein-interaction for UBC www.ncbi.nlm.ni...
Null ppi.KLF1 View Gene Set 0.0003698 13 0.02014 40 Protein-protein-interaction for KLF1 www.ncbi.nlm.ni...
Null ppi.PMS1 View Gene Set 0.000377 15 0.02014 40 Protein-protein-interaction for PMS1 www.ncbi.nlm.ni...
Null ppi.STAT3 View Gene Set 0.000354 57 0.02014 40 Protein-protein-interaction for STAT3 www.ncbi.nlm.ni...
Null ppi.ARHGAP32 View Gene Set 0.0003724 19 0.02014 40 Protein-protein-interaction for ARHGAP32 www.ncbi.nlm.ni...
Null ppi.CDKN1B View Gene Set 0.0004368 12 0.02215 44 Protein-protein-interaction for CDKN1B www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0004446 104 0.02215 44 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.JUN View Gene Set 0.0004264 41 0.02215 44 Protein-protein-interaction for JUN www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0004586 42 0.02215 44 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.0004629 7 0.02215 44 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 0.0004744 38 0.02224 49 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.RBMX View Gene Set 0.0005223 15 0.02399 50 Protein-protein-interaction for RBMX www.ncbi.nlm.ni...
Null ppi.WDR61 View Gene Set 0.0005794 6 0.0261 51 Protein-protein-interaction for WDR61 www.ncbi.nlm.ni...
Null ppi.PIN1 View Gene Set 0.000599 33 0.02646 52 Protein-protein-interaction for PIN1 www.ncbi.nlm.ni...
Null ppi.FOXM1 View Gene Set 0.0006307 8 0.02691 53 Protein-protein-interaction for FOXM1 www.ncbi.nlm.ni...
Null ppi.TP53BP1 View Gene Set 0.0006327 13 0.02691 53 Protein-protein-interaction for TP53BP1 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.0007027 50 0.02935 55 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.PDS5A View Gene Set 0.0007531 6 0.03089 56 Protein-protein-interaction for PDS5A www.ncbi.nlm.ni...
Null ppi.SAP25 View Gene Set 0.0007727 29 0.03112 57 Protein-protein-interaction for SAP25 www.ncbi.nlm.ni...
Null ppi.CDCA8 View Gene Set 0.0007857 8 0.03112 57 Protein-protein-interaction for CDCA8 www.ncbi.nlm.ni...
Null ppi.RAD50 View Gene Set 0.0008015 20 0.03121 59 Protein-protein-interaction for RAD50 www.ncbi.nlm.ni...
Null ppi.HEXIM1 View Gene Set 0.0008409 6 0.03196 60 Protein-protein-interaction for HEXIM1 www.ncbi.nlm.ni...
Null ppi.SUMO3 View Gene Set 0.0008488 7 0.03196 60 Protein-protein-interaction for SUMO3 www.ncbi.nlm.ni...
Null ppi.STAT1 View Gene Set 0.0009339 31 0.0346 62 Protein-protein-interaction for STAT1 www.ncbi.nlm.ni...
Null ppi.PRSS23 View Gene Set 0.0009511 13 0.03468 63 Protein-protein-interaction for PRSS23 www.ncbi.nlm.ni...
Null ppi.STAM2 View Gene Set 0.000975 13 0.03499 64 Protein-protein-interaction for STAM2 www.ncbi.nlm.ni...
Null ppi.CHEK1 View Gene Set 0.001039 9 0.03563 65 Protein-protein-interaction for CHEK1 www.ncbi.nlm.ni...
Null ppi.ZHX1 View Gene Set 0.001009 28 0.03563 65 Protein-protein-interaction for ZHX1 www.ncbi.nlm.ni...
Null ppi.SEH1L View Gene Set 0.001028 6 0.03563 65 Protein-protein-interaction for SEH1L www.ncbi.nlm.ni...
Null ppi.RNF11 View Gene Set 0.001132 16 0.03823 68 Protein-protein-interaction for RNF11 www.ncbi.nlm.ni...
Null ppi.RFWD3 View Gene Set 0.001157 8 0.03852 69 Protein-protein-interaction for RFWD3 www.ncbi.nlm.ni...
Null ppi.EGFR View Gene Set 0.001176 35 0.03858 70 Protein-protein-interaction for EGFR www.ncbi.nlm.ni...
Null ppi.PIAS1 View Gene Set 0.001269 25 0.04107 71 Protein-protein-interaction for PIAS1 www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 0.00137 79 0.04369 72 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.FYCO1 View Gene Set 0.001463 16 0.04542 73 Protein-protein-interaction for FYCO1 www.ncbi.nlm.ni...
Null ppi.IQGAP1 View Gene Set 0.001455 12 0.04542 73 Protein-protein-interaction for IQGAP1 www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 0.00152 64 0.04547 75 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.DIDO1 View Gene Set 0.001544 6 0.04547 75 Protein-protein-interaction for DIDO1 www.ncbi.nlm.ni...
Null ppi.DVL3 View Gene Set 0.00149 6 0.04547 75 Protein-protein-interaction for DVL3 www.ncbi.nlm.ni...
Null ppi.RPAP1 View Gene Set 0.001531 24 0.04547 75 Protein-protein-interaction for RPAP1 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 0.001598 11 0.04588 79 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.ARHGAP17 View Gene Set 0.001588 15 0.04588 79 Protein-protein-interaction for ARHGAP17 www.ncbi.nlm.ni...
Null ppi.USP20 View Gene Set 0.001717 29 0.0487 81 Protein-protein-interaction for USP20 www.ncbi.nlm.ni...
Null ppi.WRN View Gene Set 0.001746 14 0.04891 82 Protein-protein-interaction for WRN www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SMAD3 View Gene Set 2.993e-05 55 0.01015 1 Protein-protein-interaction for SMAD3 www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 2.422e-05 22 0.01015 1 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.38e-05 166 0.01015 1 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.UBB View Gene Set 9.704e-06 44 0.01015 1 Protein-protein-interaction for UBB www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 1.187e-05 13 0.01015 1 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.CDC7 View Gene Set 2.722e-05 13 0.01015 1 Protein-protein-interaction for CDC7 www.ncbi.nlm.ni...
Null ppi.HDAC3 View Gene Set 2.003e-05 40 0.01015 1 Protein-protein-interaction for HDAC3 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 4.005e-05 49 0.01027 8 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 5.623e-05 11 0.01027 8 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 5.349e-05 33 0.01027 8 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.RFC4 View Gene Set 4.103e-05 7 0.01027 8 Protein-protein-interaction for RFC4 www.ncbi.nlm.ni...
Null ppi.SKP2 View Gene Set 4.962e-05 20 0.01027 8 Protein-protein-interaction for SKP2 www.ncbi.nlm.ni...
Null ppi.TRAF6 View Gene Set 4.532e-05 43 0.01027 8 Protein-protein-interaction for TRAF6 www.ncbi.nlm.ni...
Null ppi.PLK1 View Gene Set 6.277e-05 14 0.01064 14 Protein-protein-interaction for PLK1 www.ncbi.nlm.ni...
Null ppi.CHAF1A View Gene Set 8.452e-05 7 0.01338 15 Protein-protein-interaction for CHAF1A www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 9.403e-05 9 0.01395 16 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.DDX17 View Gene Set 0.0001247 11 0.01742 17 Protein-protein-interaction for DDX17 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 0.0001481 7 0.01954 18 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.QKI View Gene Set 0.0001942 8 0.02427 19 Protein-protein-interaction for QKI www.ncbi.nlm.ni...
Null ppi.RNF11 View Gene Set 0.0002056 39 0.0244 20 Protein-protein-interaction for RNF11 www.ncbi.nlm.ni...
Null ppi.HDAC1 View Gene Set 0.0002281 28 0.02461 21 Protein-protein-interaction for HDAC1 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.0002254 14 0.02461 21 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.STX6 View Gene Set 0.0003434 8 0.03544 23 Protein-protein-interaction for STX6 www.ncbi.nlm.ni...
Null ppi.CDKN1A View Gene Set 0.0003971 17 0.03637 24 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.ZHX1 View Gene Set 0.0004687 30 0.03637 24 Protein-protein-interaction for ZHX1 www.ncbi.nlm.ni...
Null ppi.CSNK2B View Gene Set 0.0004523 14 0.03637 24 Protein-protein-interaction for CSNK2B www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0004749 47 0.03637 24 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.SMAD4 View Gene Set 0.0004639 43 0.03637 24 Protein-protein-interaction for SMAD4 www.ncbi.nlm.ni...
Null ppi.MCM4 View Gene Set 0.0004606 6 0.03637 24 Protein-protein-interaction for MCM4 www.ncbi.nlm.ni...
Null ppi.PIN1 View Gene Set 0.0003867 21 0.03637 24 Protein-protein-interaction for PIN1 www.ncbi.nlm.ni...
Null ppi.STAT1 View Gene Set 0.0004385 51 0.03637 24 Protein-protein-interaction for STAT1 www.ncbi.nlm.ni...
Null ppi.FANCD2 View Gene Set 0.0005276 6 0.03694 32 Protein-protein-interaction for FANCD2 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0005154 28 0.03694 32 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.SNIP1 View Gene Set 0.0005291 27 0.03694 32 Protein-protein-interaction for SNIP1 www.ncbi.nlm.ni...
Null ppi.CDKN1B View Gene Set 0.0006697 14 0.04297 35 Protein-protein-interaction for CDKN1B www.ncbi.nlm.ni...
Null ppi.NR3C1 View Gene Set 0.000654 17 0.04297 35 Protein-protein-interaction for NR3C1 www.ncbi.nlm.ni...
Null ppi.YWHAG View Gene Set 0.0006542 106 0.04297 35 Protein-protein-interaction for YWHAG www.ncbi.nlm.ni...
Null ppi.CHEK1 View Gene Set 0.0006888 9 0.04301 38 Protein-protein-interaction for CHEK1 www.ncbi.nlm.ni...
Null ppi.XPO1 View Gene Set 0.0007066 30 0.04301 38 Protein-protein-interaction for XPO1 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 0.0007641 10 0.04535 40 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.SUPT5H View Gene Set 0.0008091 11 0.04674 41 Protein-protein-interaction for SUPT5H www.ncbi.nlm.ni...
Null ppi.SUMO1 View Gene Set 0.0008268 37 0.04674 41 Protein-protein-interaction for SUMO1 www.ncbi.nlm.ni...
Null ppi.IRS2 View Gene Set 0.000862 33 0.04759 43 Protein-protein-interaction for IRS2 www.ncbi.nlm.ni...
Null ppi.SOCS3 View Gene Set 0.0008991 27 0.04851 44 Protein-protein-interaction for SOCS3 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 4.41e-11 251 1.585e-07 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 2.194e-07 47 0.0002628 2 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 1.889e-07 42 0.0002628 2 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 1.206e-06 24 0.001084 4 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 1.913e-06 15 0.001146 5 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.837e-06 220 0.001146 5 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 2.486e-06 147 0.001276 7 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.TOPORS View Gene Set 5.541e-06 28 0.002332 8 Protein-protein-interaction for TOPORS www.ncbi.nlm.ni...
Null ppi.CHTF18 View Gene Set 6.489e-06 13 0.002332 8 Protein-protein-interaction for CHTF18 www.ncbi.nlm.ni...
Null ppi.UBB View Gene Set 6.271e-06 46 0.002332 8 Protein-protein-interaction for UBB www.ncbi.nlm.ni...
Null ppi.RFC4 View Gene Set 8.149e-06 12 0.002663 11 Protein-protein-interaction for RFC4 www.ncbi.nlm.ni...
Null ppi.SKP2 View Gene Set 9.182e-06 28 0.00275 12 Protein-protein-interaction for SKP2 www.ncbi.nlm.ni...
Null ppi.MCPH1 View Gene Set 1.161e-05 17 0.003209 13 Protein-protein-interaction for MCPH1 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 1.486e-05 11 0.00356 14 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 1.406e-05 31 0.00356 14 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.PIN1 View Gene Set 1.657e-05 41 0.003721 16 Protein-protein-interaction for PIN1 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 1.945e-05 15 0.004112 17 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.RBL2 View Gene Set 2.267e-05 30 0.004526 18 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.CDC7 View Gene Set 2.722e-05 13 0.00515 19 Protein-protein-interaction for CDC7 www.ncbi.nlm.ni...
Null ppi.BAZ1B View Gene Set 3.357e-05 31 0.006033 20 Protein-protein-interaction for BAZ1B www.ncbi.nlm.ni...
Null ppi.RNF11 View Gene Set 3.872e-05 46 0.006325 21 Protein-protein-interaction for RNF11 www.ncbi.nlm.ni...
Null ppi.SMAD3 View Gene Set 3.825e-05 68 0.006325 21 Protein-protein-interaction for SMAD3 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 4.772e-05 48 0.00686 23 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 4.39e-05 56 0.00686 23 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.TRAF6 View Gene Set 4.693e-05 62 0.00686 23 Protein-protein-interaction for TRAF6 www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 5.491e-05 15 0.007137 26 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.XPO1 View Gene Set 5.56e-05 43 0.007137 26 Protein-protein-interaction for XPO1 www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 5.411e-05 41 0.007137 26 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.CSNK2B View Gene Set 6.452e-05 17 0.007997 29 Protein-protein-interaction for CSNK2B www.ncbi.nlm.ni...
Null ppi.CDKN1B View Gene Set 7.412e-05 17 0.00888 30 Protein-protein-interaction for CDKN1B www.ncbi.nlm.ni...
Null ppi.H2AFY View Gene Set 8.097e-05 13 0.009388 31 Protein-protein-interaction for H2AFY www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 8.404e-05 116 0.009439 32 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 9.466e-05 50 0.00945 33 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.CLSPN View Gene Set 9.435e-05 18 0.00945 33 Protein-protein-interaction for CLSPN www.ncbi.nlm.ni...
Null ppi.BRCC3 View Gene Set 8.891e-05 22 0.00945 33 Protein-protein-interaction for BRCC3 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 9.128e-05 16 0.00945 33 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.HIST1H4A View Gene Set 9.851e-05 31 0.009569 37 Protein-protein-interaction for HIST1H4A www.ncbi.nlm.ni...
Null ppi.USP7 View Gene Set 0.0001047 32 0.009904 38 Protein-protein-interaction for USP7 www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 0.0001363 16 0.01213 39 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.FBXO7 View Gene Set 0.0001326 12 0.01213 39 Protein-protein-interaction for FBXO7 www.ncbi.nlm.ni...
Null ppi.ATAD5 View Gene Set 0.0001383 6 0.01213 39 Protein-protein-interaction for ATAD5 www.ncbi.nlm.ni...
Null ppi.UBE2I View Gene Set 0.000155 88 0.01326 42 Protein-protein-interaction for UBE2I www.ncbi.nlm.ni...
Null ppi.FAN1 View Gene Set 0.0001688 13 0.01411 43 Protein-protein-interaction for FAN1 www.ncbi.nlm.ni...
Null ppi.FOXM1 View Gene Set 0.0001856 9 0.01513 44 Protein-protein-interaction for FOXM1 www.ncbi.nlm.ni...
Null ppi.JUN View Gene Set 0.0001894 55 0.01513 44 Protein-protein-interaction for JUN www.ncbi.nlm.ni...
Null ppi.QKI View Gene Set 0.0001942 8 0.01517 46 Protein-protein-interaction for QKI www.ncbi.nlm.ni...
Null ppi.MAPK9 View Gene Set 0.0002289 21 0.01751 47 Protein-protein-interaction for MAPK9 www.ncbi.nlm.ni...
Null ppi.KLF1 View Gene Set 0.0002681 14 0.01966 48 Protein-protein-interaction for KLF1 www.ncbi.nlm.ni...
Null ppi.BRIP1 View Gene Set 0.0002658 8 0.01966 48 Protein-protein-interaction for BRIP1 www.ncbi.nlm.ni...
Null ppi.CHAF1A View Gene Set 0.0002914 21 0.02095 50 Protein-protein-interaction for CHAF1A www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 0.0003145 39 0.02138 51 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.E2F1 View Gene Set 0.0003095 24 0.02138 51 Protein-protein-interaction for E2F1 www.ncbi.nlm.ni...
Null ppi.UBC View Gene Set 0.0003153 293 0.02138 51 Protein-protein-interaction for UBC www.ncbi.nlm.ni...
Null ppi.STAM2 View Gene Set 0.0003401 14 0.02225 54 Protein-protein-interaction for STAM2 www.ncbi.nlm.ni...
Null ppi.TP53BP1 View Gene Set 0.0003405 17 0.02225 54 Protein-protein-interaction for TP53BP1 www.ncbi.nlm.ni...
Null ppi.155030 View Gene Set 0.0003755 23 0.02377 56 Protein-protein-interaction for 155030 www.ncbi.nlm.ni...
Null ppi.PMS1 View Gene Set 0.000377 15 0.02377 56 Protein-protein-interaction for PMS1 www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 0.0003967 46 0.02451 58 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.MCM3 View Gene Set 0.0004023 6 0.02451 58 Protein-protein-interaction for MCM3 www.ncbi.nlm.ni...
Null ppi.PCBP2 View Gene Set 0.0004157 8 0.0249 60 Protein-protein-interaction for PCBP2 www.ncbi.nlm.ni...
Null ppi.1491938 View Gene Set 0.0004341 25 0.02558 61 Protein-protein-interaction for 1491938 www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 0.000459 104 0.02621 62 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.XRCC3 View Gene Set 0.0004595 6 0.02621 62 Protein-protein-interaction for XRCC3 www.ncbi.nlm.ni...
Null ppi.RBMX View Gene Set 0.0005223 15 0.02802 64 Protein-protein-interaction for RBMX www.ncbi.nlm.ni...
Null ppi.STAT1 View Gene Set 0.0005074 62 0.02802 64 Protein-protein-interaction for STAT1 www.ncbi.nlm.ni...
Null ppi.XRCC5 View Gene Set 0.0005218 52 0.02802 64 Protein-protein-interaction for XRCC5 www.ncbi.nlm.ni...
Null ppi.MAD1L1 View Gene Set 0.0005206 11 0.02802 64 Protein-protein-interaction for MAD1L1 www.ncbi.nlm.ni...
Null ppi.FKBP8 View Gene Set 0.0005628 8 0.02974 68 Protein-protein-interaction for FKBP8 www.ncbi.nlm.ni...
Null ppi.RIPK1 View Gene Set 0.0006154 26 0.03205 69 Protein-protein-interaction for RIPK1 www.ncbi.nlm.ni...
Null ppi.SMAD4 View Gene Set 0.0006434 52 0.03282 70 Protein-protein-interaction for SMAD4 www.ncbi.nlm.ni...
Null ppi.WDR61 View Gene Set 0.0006484 9 0.03282 70 Protein-protein-interaction for WDR61 www.ncbi.nlm.ni...
Null ppi.SAP25 View Gene Set 0.0007727 29 0.0356 72 Protein-protein-interaction for SAP25 www.ncbi.nlm.ni...
Null ppi.DDX17 View Gene Set 0.0007186 26 0.0356 72 Protein-protein-interaction for DDX17 www.ncbi.nlm.ni...
Null ppi.PDS5A View Gene Set 0.0007531 6 0.0356 72 Protein-protein-interaction for PDS5A www.ncbi.nlm.ni...
Null ppi.NIPBL View Gene Set 0.0007638 6 0.0356 72 Protein-protein-interaction for NIPBL www.ncbi.nlm.ni...
Null ppi.CNOT7 View Gene Set 0.0007634 13 0.0356 72 Protein-protein-interaction for CNOT7 www.ncbi.nlm.ni...
Null ppi.YWHAG View Gene Set 0.0007365 119 0.0356 72 Protein-protein-interaction for YWHAG www.ncbi.nlm.ni...
Null ppi.SNIP1 View Gene Set 0.0007523 28 0.0356 72 Protein-protein-interaction for SNIP1 www.ncbi.nlm.ni...
Null ppi.CDCA8 View Gene Set 0.0007857 8 0.03575 79 Protein-protein-interaction for CDCA8 www.ncbi.nlm.ni...
Null ppi.NR3C1 View Gene Set 0.0008246 19 0.03705 80 Protein-protein-interaction for NR3C1 www.ncbi.nlm.ni...
Null ppi.DBF4 View Gene Set 0.0008443 12 0.03712 81 Protein-protein-interaction for DBF4 www.ncbi.nlm.ni...
Null ppi.ZHX1 View Gene Set 0.0008778 35 0.03712 81 Protein-protein-interaction for ZHX1 www.ncbi.nlm.ni...
Null ppi.AP3B1 View Gene Set 0.0008696 12 0.03712 81 Protein-protein-interaction for AP3B1 www.ncbi.nlm.ni...
Null ppi.SPAG9 View Gene Set 0.000853 11 0.03712 81 Protein-protein-interaction for SPAG9 www.ncbi.nlm.ni...
Null ppi.MATR3 View Gene Set 0.0008758 7 0.03712 81 Protein-protein-interaction for MATR3 www.ncbi.nlm.ni...
Null ppi.CASP3 View Gene Set 0.0009068 20 0.0379 86 Protein-protein-interaction for CASP3 www.ncbi.nlm.ni...
Null ppi.USP20 View Gene Set 0.000973 30 0.0385 87 Protein-protein-interaction for USP20 www.ncbi.nlm.ni...
Null ppi.PRSS23 View Gene Set 0.0009511 13 0.0385 87 Protein-protein-interaction for PRSS23 www.ncbi.nlm.ni...
Null ppi.THAP1 View Gene Set 0.0009769 12 0.0385 87 Protein-protein-interaction for THAP1 www.ncbi.nlm.ni...
Null ppi.SOX6 View Gene Set 0.0009856 9 0.0385 87 Protein-protein-interaction for SOX6 www.ncbi.nlm.ni...
Null ppi.RAD9A View Gene Set 0.000951 14 0.0385 87 Protein-protein-interaction for RAD9A www.ncbi.nlm.ni...
Null ppi.SOCS3 View Gene Set 0.000964 32 0.0385 87 Protein-protein-interaction for SOCS3 www.ncbi.nlm.ni...
Null ppi.STX6 View Gene Set 0.001029 11 0.03894 93 Protein-protein-interaction for STX6 www.ncbi.nlm.ni...
Null ppi.EIF4EBP1 View Gene Set 0.001017 8 0.03894 93 Protein-protein-interaction for EIF4EBP1 www.ncbi.nlm.ni...
Null ppi.SEH1L View Gene Set 0.001028 6 0.03894 93 Protein-protein-interaction for SEH1L www.ncbi.nlm.ni...
Null ppi.WWOX View Gene Set 0.001047 26 0.03918 96 Protein-protein-interaction for WWOX www.ncbi.nlm.ni...
Null ppi.EGFR View Gene Set 0.001058 53 0.03919 97 Protein-protein-interaction for EGFR www.ncbi.nlm.ni...
Null ppi.CDKN1A View Gene Set 0.00108 20 0.03951 98 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.CHEK1 View Gene Set 0.001088 10 0.03951 98 Protein-protein-interaction for CHEK1 www.ncbi.nlm.ni...
Null ppi.RAD17 View Gene Set 0.001118 14 0.0398 100 Protein-protein-interaction for RAD17 www.ncbi.nlm.ni...
Null ppi.IRS2 View Gene Set 0.001113 38 0.0398 100 Protein-protein-interaction for IRS2 www.ncbi.nlm.ni...
Null ppi.SMC1A View Gene Set 0.001134 23 0.03997 102 Protein-protein-interaction for SMC1A www.ncbi.nlm.ni...
Null ppi.RFWD3 View Gene Set 0.001157 8 0.04038 103 Protein-protein-interaction for RFWD3 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.001185 55 0.04057 104 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.TMPO View Gene Set 0.001181 7 0.04057 104 Protein-protein-interaction for TMPO www.ncbi.nlm.ni...
Null ppi.CBLC View Gene Set 0.001224 13 0.04149 106 Protein-protein-interaction for CBLC www.ncbi.nlm.ni...
Null ppi.CSNK2A1 View Gene Set 0.001247 33 0.0419 107 Protein-protein-interaction for CSNK2A1 www.ncbi.nlm.ni...
Null ppi.ELF3 View Gene Set 0.001295 7 0.0423 108 Protein-protein-interaction for ELF3 www.ncbi.nlm.ni...
Null ppi.RELA View Gene Set 0.001282 72 0.0423 108 Protein-protein-interaction for RELA www.ncbi.nlm.ni...
Null ppi.CDC20 View Gene Set 0.001286 5 0.0423 108 Protein-protein-interaction for CDC20 www.ncbi.nlm.ni...
Null ppi.NDC80 View Gene Set 0.001324 10 0.04265 111 Protein-protein-interaction for NDC80 www.ncbi.nlm.ni...
Null ppi.TP73 View Gene Set 0.001329 38 0.04265 111 Protein-protein-interaction for TP73 www.ncbi.nlm.ni...
Null ppi.E2F4 View Gene Set 0.001385 16 0.04404 113 Protein-protein-interaction for E2F4 www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 0.001546 66 0.04451 114 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.HEXIM1 View Gene Set 0.00153 7 0.04451 114 Protein-protein-interaction for HEXIM1 www.ncbi.nlm.ni...
Null ppi.DIDO1 View Gene Set 0.001544 6 0.04451 114 Protein-protein-interaction for DIDO1 www.ncbi.nlm.ni...
Null ppi.RPAP1 View Gene Set 0.001531 24 0.04451 114 Protein-protein-interaction for RPAP1 www.ncbi.nlm.ni...
Null ppi.YBX1 View Gene Set 0.001528 14 0.04451 114 Protein-protein-interaction for YBX1 www.ncbi.nlm.ni...
Null ppi.RRM2B View Gene Set 0.001546 8 0.04451 114 Protein-protein-interaction for RRM2B www.ncbi.nlm.ni...
Null ppi.PIN4 View Gene Set 0.001419 7 0.04451 114 Protein-protein-interaction for PIN4 www.ncbi.nlm.ni...
Null ppi.PMAIP1 View Gene Set 0.001504 8 0.04451 114 Protein-protein-interaction for PMAIP1 www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 0.001522 28 0.04451 114 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.FYCO1 View Gene Set 0.001463 16 0.04451 114 Protein-protein-interaction for FYCO1 www.ncbi.nlm.ni...
Null ppi.CASP9 View Gene Set 0.001468 13 0.04451 114 Protein-protein-interaction for CASP9 www.ncbi.nlm.ni...
Null ppi.LRSAM1 View Gene Set 0.001548 28 0.04451 114 Protein-protein-interaction for LRSAM1 www.ncbi.nlm.ni...
Null ppi.KTN1 View Gene Set 0.001572 7 0.04474 126 Protein-protein-interaction for KTN1 www.ncbi.nlm.ni...
Null ppi.ARHGAP17 View Gene Set 0.001588 15 0.04474 126 Protein-protein-interaction for ARHGAP17 www.ncbi.nlm.ni...
Null ppi.STAT3 View Gene Set 0.001593 93 0.04474 126 Protein-protein-interaction for STAT3 www.ncbi.nlm.ni...
Null ppi.ARHGAP8 View Gene Set 0.001639 8 0.04567 129 Protein-protein-interaction for ARHGAP8 www.ncbi.nlm.ni...
Null ppi.SIRPA View Gene Set 0.001735 8 0.04623 130 Protein-protein-interaction for SIRPA www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 0.001722 76 0.04623 130 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.SS18 View Gene Set 0.001737 7 0.04623 130 Protein-protein-interaction for SS18 www.ncbi.nlm.ni...
Null ppi.WEE1 View Gene Set 0.001705 11 0.04623 130 Protein-protein-interaction for WEE1 www.ncbi.nlm.ni...
Null ppi.TAX1BP1 View Gene Set 0.001681 5 0.04623 130 Protein-protein-interaction for TAX1BP1 www.ncbi.nlm.ni...
Null ppi.DZIP3 View Gene Set 0.001698 20 0.04623 130 Protein-protein-interaction for DZIP3 www.ncbi.nlm.ni...
Null ppi.TNFAIP3 View Gene Set 0.001756 14 0.04641 136 Protein-protein-interaction for TNFAIP3 www.ncbi.nlm.ni...
Null ppi.ARHGAP32 View Gene Set 0.001803 25 0.0473 137 Protein-protein-interaction for ARHGAP32 www.ncbi.nlm.ni...
Null ppi.RAD50 View Gene Set 0.001836 21 0.04781 138 Protein-protein-interaction for RAD50 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EGFR1 View Gene Set 2.508e-06 137 2.508e-05 1 CELL_MAP - EGFR1 gene set www.pathwaycomm...
Null TNF alpha/NF-kB View Gene Set 9.83e-06 170 4.915e-05 2 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...
Null TGFBR View Gene Set 1.633e-05 124 5.444e-05 3 CELL_MAP - TGFBR gene set www.pathwaycomm...
Null AndrogenReceptor View Gene Set 0.0006291 78 0.001573 4 CELL_MAP - AndrogenReceptor gene set www.pathwaycomm...
Null Wnt View Gene Set 0.001606 81 0.003212 5 CELL_MAP - Wnt gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PLK1 signaling events View Gene Set 2.998e-12 104 5.576e-10 1 NCI_NATURE - PLK1 signaling events gene set www.pathwaycomm...
Null Polo-like kinase signaling events in the cell cycle View Gene Set 1.37e-11 109 1.274e-09 2 NCI_NATURE - Polo-like kinase signaling events in the cell cycle gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 1.264e-09 937 7.838e-08 3 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...
Null IFN-gamma pathway View Gene Set 2.308e-09 590 1.073e-07 4 NCI_NATURE - IFN-gamma pathway gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 8.458e-09 796 3.146e-07 5 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 1.474e-08 875 4.568e-07 6 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null LKB1 signaling events View Gene Set 1.774e-08 372 4.714e-07 7 NCI_NATURE - LKB1 signaling events gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 2.549e-08 841 5.926e-07 8 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 3.877e-08 812 6.009e-07 9 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 3.877e-08 812 6.009e-07 9 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 3.204e-08 686 6.009e-07 9 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 3.877e-08 812 6.009e-07 9 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null mTOR signaling pathway View Gene Set 5.807e-08 343 8.308e-07 13 NCI_NATURE - mTOR signaling pathway gene set www.pathwaycomm...
Null E2F transcription factor network View Gene Set 7.076e-08 73 9.401e-07 14 NCI_NATURE - E2F transcription factor network gene set www.pathwaycomm...
Null Signaling by Aurora kinases View Gene Set 7.847e-08 98 9.73e-07 15 NCI_NATURE - Signaling by Aurora kinases gene set www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt View Gene Set 1.151e-07 532 1.301e-06 16 NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set www.pathwaycomm...
Null EGFR-dependent Endothelin signaling events View Gene Set 1.19e-07 345 1.301e-06 16 NCI_NATURE - EGFR-dependent Endothelin signaling events gene set www.pathwaycomm...
Null Regulation of Androgen receptor activity View Gene Set 1.659e-07 108 1.715e-06 18 NCI_NATURE - Regulation of Androgen receptor activity gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 4.21e-07 688 4.121e-06 19 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null Class I PI3K signaling events View Gene Set 5.879e-07 632 5.467e-06 20 NCI_NATURE - Class I PI3K signaling events gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 7.775e-07 677 6.886e-06 21 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...
Null Androgen-mediated signaling View Gene Set 8.745e-07 130 7.393e-06 22 NCI_NATURE - Androgen-mediated signaling gene set www.pathwaycomm...
Null Signaling events mediated by focal adhesion kinase View Gene Set 1.828e-06 660 1.478e-05 23 NCI_NATURE - Signaling events mediated by focal adhesion kinase gene set www.pathwaycomm...
Null Insulin Pathway View Gene Set 4.156e-06 263 2.973e-05 24 NCI_NATURE - Insulin Pathway gene set www.pathwaycomm...
Null Arf6 signaling events View Gene Set 4.156e-06 263 2.973e-05 24 NCI_NATURE - Arf6 signaling events gene set www.pathwaycomm...
Null Arf6 trafficking events View Gene Set 4.156e-06 263 2.973e-05 24 NCI_NATURE - Arf6 trafficking events gene set www.pathwaycomm...
Null TNF receptor signaling pathway View Gene Set 8.779e-06 299 6.048e-05 27 NCI_NATURE - TNF receptor signaling pathway gene set www.pathwaycomm...
Null IGF1 pathway View Gene Set 1.022e-05 271 6.787e-05 28 NCI_NATURE - IGF1 pathway gene set www.pathwaycomm...
Null Endothelins View Gene Set 1.15e-05 439 7.379e-05 29 NCI_NATURE - Endothelins gene set www.pathwaycomm...
Null IL2-mediated signaling events View Gene Set 1.647e-05 116 0.0001006 30 NCI_NATURE - IL2-mediated signaling events gene set www.pathwaycomm...
Null Noncanonical Wnt signaling pathway View Gene Set 1.676e-05 185 0.0001006 30 NCI_NATURE - Noncanonical Wnt signaling pathway gene set www.pathwaycomm...
Null Plasma membrane estrogen receptor signaling View Gene Set 1.868e-05 297 0.0001086 32 NCI_NATURE - Plasma membrane estrogen receptor signaling gene set www.pathwaycomm...
Null Aurora A signaling View Gene Set 2.48e-05 64 0.0001318 33 NCI_NATURE - Aurora A signaling gene set www.pathwaycomm...
Null FOXM1 transcription factor network View Gene Set 2.475e-05 42 0.0001318 33 NCI_NATURE - FOXM1 transcription factor network gene set www.pathwaycomm...
Null Syndecan-4-mediated signaling events View Gene Set 2.43e-05 212 0.0001318 33 NCI_NATURE - Syndecan-4-mediated signaling events gene set www.pathwaycomm...
Null Wnt signaling network View Gene Set 2.704e-05 203 0.0001397 36 NCI_NATURE - Wnt signaling network gene set www.pathwaycomm...
Null E-cadherin signaling events View Gene Set 2.906e-05 73 0.0001461 37 NCI_NATURE - E-cadherin signaling events gene set www.pathwaycomm...
Null Aurora B signaling View Gene Set 5.124e-05 41 0.0002295 38 NCI_NATURE - Aurora B signaling gene set www.pathwaycomm...
Null TGF-beta receptor signaling View Gene Set 5.306e-05 306 0.0002295 38 NCI_NATURE - TGF-beta receptor signaling gene set www.pathwaycomm...
Null Stabilization and expansion of the E-cadherin adherens junction View Gene Set 5.025e-05 67 0.0002295 38 NCI_NATURE - Stabilization and expansion of the E-cadherin adherens junction gene set www.pathwaycomm...
Null E-cadherin signaling in the nascent adherens junction View Gene Set 5.025e-05 67 0.0002295 38 NCI_NATURE - E-cadherin signaling in the nascent adherens junction gene set www.pathwaycomm...
Null Regulation of nuclear SMAD2/3 signaling View Gene Set 5.306e-05 306 0.0002295 38 NCI_NATURE - Regulation of nuclear SMAD2/3 signaling gene set www.pathwaycomm...
Null Regulation of cytoplasmic and nuclear SMAD2/3 signaling View Gene Set 5.306e-05 306 0.0002295 38 NCI_NATURE - Regulation of cytoplasmic and nuclear SMAD2/3 signaling gene set www.pathwaycomm...
Null IL2 signaling events mediated by PI3K View Gene Set 8.632e-05 68 0.0003649 44 NCI_NATURE - IL2 signaling events mediated by PI3K gene set www.pathwaycomm...
Null Glypican 3 network View Gene Set 9.743e-05 209 0.0004027 45 NCI_NATURE - Glypican 3 network gene set www.pathwaycomm...
Null Canonical Wnt signaling pathway View Gene Set 0.0001079 156 0.0004361 46 NCI_NATURE - Canonical Wnt signaling pathway gene set www.pathwaycomm...
Null Coregulation of Androgen receptor activity View Gene Set 0.0001243 61 0.0004918 47 NCI_NATURE - Coregulation of Androgen receptor activity gene set www.pathwaycomm...
Null FAS (CD95) signaling pathway View Gene Set 0.0001369 130 0.0005305 48 NCI_NATURE - FAS (CD95) signaling pathway gene set www.pathwaycomm...
Null ALK1 pathway View Gene Set 0.0001805 324 0.0006853 49 NCI_NATURE - ALK1 pathway gene set www.pathwaycomm...
Null ALK1 signaling events View Gene Set 0.0001993 322 0.0007415 50 NCI_NATURE - ALK1 signaling events gene set www.pathwaycomm...
Null Nectin adhesion pathway View Gene Set 0.0003239 126 0.001181 51 NCI_NATURE - Nectin adhesion pathway gene set www.pathwaycomm...
Null Arf6 downstream pathway View Gene Set 0.0003571 93 0.001253 52 NCI_NATURE - Arf6 downstream pathway gene set www.pathwaycomm...
Null Signaling events regulated by Ret tyrosine kinase View Gene Set 0.0003521 70 0.001253 52 NCI_NATURE - Signaling events regulated by Ret tyrosine kinase gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.0003787 29 0.001304 54 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...
Null C-MYC pathway View Gene Set 0.0004098 149 0.001386 55 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null IL1-mediated signaling events View Gene Set 0.0004204 234 0.001396 56 NCI_NATURE - IL1-mediated signaling events gene set www.pathwaycomm...
Null Regulation of Wnt-mediated beta catenin signaling and target gene transcription View Gene Set 0.0004458 135 0.001455 57 NCI_NATURE - Regulation of Wnt-mediated beta catenin signaling and target gene transcription gene set www.pathwaycomm...
Null Regulation of CDC42 activity View Gene Set 0.0004907 231 0.001574 58 NCI_NATURE - Regulation of CDC42 activity gene set www.pathwaycomm...
Null CDC42 signaling events View Gene Set 0.0008279 219 0.00261 59 NCI_NATURE - CDC42 signaling events gene set www.pathwaycomm...
Null Signaling events mediated by PRL View Gene Set 0.0009951 23 0.003085 60 NCI_NATURE - Signaling events mediated by PRL gene set www.pathwaycomm...
Null Signaling events mediated by VEGFR1 and VEGFR2 View Gene Set 0.001018 69 0.003104 61 NCI_NATURE - Signaling events mediated by VEGFR1 and VEGFR2 gene set www.pathwaycomm...
Null CD40/CD40L signaling View Gene Set 0.001053 58 0.003158 62 NCI_NATURE - CD40/CD40L signaling gene set www.pathwaycomm...
Null p38 MAPK signaling pathway View Gene Set 0.001124 189 0.00332 63 NCI_NATURE - p38 MAPK signaling pathway gene set www.pathwaycomm...
Null Regulation of retinoblastoma protein View Gene Set 0.001283 66 0.003729 64 NCI_NATURE - Regulation of retinoblastoma protein gene set www.pathwaycomm...
Null BCR signaling pathway View Gene Set 0.00156 67 0.004465 65 NCI_NATURE - BCR signaling pathway gene set www.pathwaycomm...
Null N-cadherin signaling events View Gene Set 0.001687 36 0.004711 66 NCI_NATURE - N-cadherin signaling events gene set www.pathwaycomm...
Null BMP receptor signaling View Gene Set 0.001699 226 0.004711 66 NCI_NATURE - BMP receptor signaling gene set www.pathwaycomm...
Null EPHB forward signaling View Gene Set 0.001722 40 0.004711 66 NCI_NATURE - EPHB forward signaling gene set www.pathwaycomm...
Null Neurotrophic factor-mediated Trk receptor signaling View Gene Set 0.001791 103 0.004829 69 NCI_NATURE - Neurotrophic factor-mediated Trk receptor signaling gene set www.pathwaycomm...
Null RAC1 signaling pathway View Gene Set 0.002038 194 0.005192 70 NCI_NATURE - RAC1 signaling pathway gene set www.pathwaycomm...
Null Regulation of RAC1 activity View Gene Set 0.002038 194 0.005192 70 NCI_NATURE - Regulation of RAC1 activity gene set www.pathwaycomm...
Null Regulation of RhoA activity View Gene Set 0.002038 194 0.005192 70 NCI_NATURE - Regulation of RhoA activity gene set www.pathwaycomm...
Null RhoA signaling pathway View Gene Set 0.002038 194 0.005192 70 NCI_NATURE - RhoA signaling pathway gene set www.pathwaycomm...
Null IL6-mediated signaling events View Gene Set 0.002112 48 0.005309 74 NCI_NATURE - IL6-mediated signaling events gene set www.pathwaycomm...
Null p75(NTR)-mediated signaling View Gene Set 0.00245 180 0.006075 75 NCI_NATURE - p75(NTR)-mediated signaling gene set www.pathwaycomm...
Null Regulation of p38-alpha and p38-beta View Gene Set 0.002696 164 0.006599 76 NCI_NATURE - Regulation of p38-alpha and p38-beta gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional activation View Gene Set 0.002957 80 0.007143 77 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null FGF signaling pathway View Gene Set 0.003532 48 0.008423 78 NCI_NATURE - FGF signaling pathway gene set www.pathwaycomm...
Null Trk receptor signaling mediated by PI3K and PLC-gamma View Gene Set 0.003654 63 0.008603 79 NCI_NATURE - Trk receptor signaling mediated by PI3K and PLC-gamma gene set www.pathwaycomm...
Null EphrinB-EPHB pathway View Gene Set 0.003799 57 0.008833 80 NCI_NATURE - EphrinB-EPHB pathway gene set www.pathwaycomm...
Null EPO signaling pathway View Gene Set 0.003967 34 0.009111 81 NCI_NATURE - EPO signaling pathway gene set www.pathwaycomm...
Null FoxO family signaling View Gene Set 0.004662 49 0.01045 82 NCI_NATURE - FoxO family signaling gene set www.pathwaycomm...
Null VEGFR1 specific signals View Gene Set 0.004618 30 0.01045 82 NCI_NATURE - VEGFR1 specific signals gene set www.pathwaycomm...
Null Regulation of Telomerase View Gene Set 0.005654 68 0.01252 84 NCI_NATURE - Regulation of Telomerase gene set www.pathwaycomm...
Null Syndecan-2-mediated signaling events View Gene Set 0.005726 77 0.01253 85 NCI_NATURE - Syndecan-2-mediated signaling events gene set www.pathwaycomm...
Null p38 signaling mediated by MAPKAP kinases View Gene Set 0.008019 21 0.01734 86 NCI_NATURE - p38 signaling mediated by MAPKAP kinases gene set www.pathwaycomm...
Null Signaling mediated by p38-alpha and p38-beta View Gene Set 0.008605 50 0.0184 87 NCI_NATURE - Signaling mediated by p38-alpha and p38-beta gene set www.pathwaycomm...
Null E-cadherin signaling in keratinocytes View Gene Set 0.008826 21 0.01865 88 NCI_NATURE - E-cadherin signaling in keratinocytes gene set www.pathwaycomm...
Null Signaling mediated by p38-gamma and p38-delta View Gene Set 0.009741 11 0.02013 89 NCI_NATURE - Signaling mediated by p38-gamma and p38-delta gene set www.pathwaycomm...
Null Rapid glucocorticoid signaling View Gene Set 0.009739 9 0.02013 89 NCI_NATURE - Rapid glucocorticoid signaling gene set www.pathwaycomm...
Null Sphingosine 1-phosphate (S1P) pathway View Gene Set 0.01055 138 0.02156 91 NCI_NATURE - Sphingosine 1-phosphate (S1P) pathway gene set www.pathwaycomm...
Null Signaling events mediated by Stem cell factor receptor (c-Kit) View Gene Set 0.01089 52 0.02201 92 NCI_NATURE - Signaling events mediated by Stem cell factor receptor (c-Kit) gene set www.pathwaycomm...
Null ErbB2/ErbB3 signaling events View Gene Set 0.01117 38 0.02234 93 NCI_NATURE - ErbB2/ErbB3 signaling events gene set www.pathwaycomm...
Null Sumoylation by RanBP2 regulates transcriptional repression View Gene Set 0.01418 15 0.02805 94 NCI_NATURE - Sumoylation by RanBP2 regulates transcriptional repression gene set www.pathwaycomm...
Null Ceramide signaling pathway View Gene Set 0.01499 49 0.02935 95 NCI_NATURE - Ceramide signaling pathway gene set www.pathwaycomm...
Null Canonical NF-kappaB pathway View Gene Set 0.01544 35 0.02991 96 NCI_NATURE - Canonical NF-kappaB pathway gene set www.pathwaycomm...
Null CXCR3-mediated signaling events View Gene Set 0.01715 37 0.03288 97 NCI_NATURE - CXCR3-mediated signaling events gene set www.pathwaycomm...
Null Paxillin-independent events mediated by a4b1 and a4b7 View Gene Set 0.02195 24 0.04138 98 NCI_NATURE - Paxillin-independent events mediated by a4b1 and a4b7 gene set www.pathwaycomm...
Null Signaling events mediated by PTP1B View Gene Set 0.02202 51 0.04138 98 NCI_NATURE - Signaling events mediated by PTP1B gene set www.pathwaycomm...
Null Lissencephaly gene (LIS1) in neuronal migration and development View Gene Set 0.02229 31 0.04147 100 NCI_NATURE - Lissencephaly gene (LIS1) in neuronal migration and development gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Cell Cycle Mitotic View Gene Set 2.363e-25 312 2.64e-22 1 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null DNA Replication View Gene Set 1.257e-21 200 7.022e-19 2 REACTOME - DNA Replication gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 1.615e-18 180 6.015e-16 3 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null Cell Cycle Checkpoints View Gene Set 9.056e-15 124 2.529e-12 4 REACTOME - Cell Cycle Checkpoints gene set www.pathwaycomm...
Null S Phase View Gene Set 4.478e-14 113 1e-11 5 REACTOME - S Phase gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 7.932e-13 104 1.477e-10 6 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null Interferon alpha/beta signaling View Gene Set 1.47e-12 65 2.345e-10 7 REACTOME - Interferon alpha/beta signaling gene set www.pathwaycomm...
Null Interferon Signaling View Gene Set 2.381e-12 86 3.325e-10 8 REACTOME - Interferon Signaling gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 3.565e-12 102 4.425e-10 9 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 6.651e-12 43 7.429e-10 10 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 9.436e-12 113 9.582e-10 11 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 1.074e-10 31 1e-08 12 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 2.202e-10 37 1.757e-08 13 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null M Phase View Gene Set 2.059e-10 90 1.757e-08 13 REACTOME - M Phase gene set www.pathwaycomm...
Null DNA Replication Pre-Initiation View Gene Set 8.046e-10 90 5.617e-08 15 REACTOME - DNA Replication Pre-Initiation gene set www.pathwaycomm...
Null M/G1 Transition View Gene Set 8.046e-10 90 5.617e-08 15 REACTOME - M/G1 Transition gene set www.pathwaycomm...
Null Mitotic Prometaphase View Gene Set 3.408e-09 86 2.239e-07 17 REACTOME - Mitotic Prometaphase gene set www.pathwaycomm...
Null Regulation of mitotic cell cycle View Gene Set 2.562e-08 95 1.431e-06 18 REACTOME - Regulation of mitotic cell cycle gene set www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins View Gene Set 2.562e-08 95 1.431e-06 18 REACTOME - APC/C-mediated degradation of cell cycle proteins gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 2.48e-08 30 1.431e-06 18 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis View Gene Set 5.08e-08 22 2.702e-06 21 REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase View Gene Set 8.008e-08 88 4.066e-06 22 REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 9.32e-08 86 4.526e-06 23 REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Host Interactions of HIV factors View Gene Set 1.164e-07 132 5.419e-06 24 REACTOME - Host Interactions of HIV factors gene set www.pathwaycomm...
Null Lagging Strand Synthesis View Gene Set 2.027e-07 20 9.056e-06 25 REACTOME - Lagging Strand Synthesis gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 2.175e-07 29 9.346e-06 26 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null Removal of licensing factors from origins View Gene Set 3.124e-07 78 1.293e-05 27 REACTOME - Removal of licensing factors from origins gene set www.pathwaycomm...
Null Regulation of DNA replication View Gene Set 4.044e-07 81 1.613e-05 28 REACTOME - Regulation of DNA replication gene set www.pathwaycomm...
Null E2F mediated regulation of DNA replication View Gene Set 1.01e-06 28 3.761e-05 29 REACTOME - E2F mediated regulation of DNA replication gene set www.pathwaycomm...
Null Metabolism of mRNA View Gene Set 1.01e-06 125 3.761e-05 29 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 1.089e-06 174 3.923e-05 31 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null G1/S-Specific Transcription View Gene Set 1.169e-06 16 4.08e-05 32 REACTOME - G1/S-Specific Transcription gene set www.pathwaycomm...
Null Switching of origins to a post-replicative state View Gene Set 1.387e-06 76 4.558e-05 33 REACTOME - Switching of origins to a post-replicative state gene set www.pathwaycomm...
Null Orc1 removal from chromatin View Gene Set 1.387e-06 76 4.558e-05 33 REACTOME - Orc1 removal from chromatin gene set www.pathwaycomm...
Null Interferon gamma signaling View Gene Set 2.076e-06 48 6.441e-05 35 REACTOME - Interferon gamma signaling gene set www.pathwaycomm...
Null Apoptosis View Gene Set 2.048e-06 148 6.441e-05 35 REACTOME - Apoptosis gene set www.pathwaycomm...
Null Assembly of the pre-replicative complex View Gene Set 2.337e-06 75 7.056e-05 37 REACTOME - Assembly of the pre-replicative complex gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 2.789e-06 28 8.198e-05 38 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null HIV Infection View Gene Set 3.149e-06 194 9.018e-05 39 REACTOME - HIV Infection gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 5.316e-06 77 0.0001484 40 REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A View Gene Set 6.178e-06 75 0.0001683 41 REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set www.pathwaycomm...
Null G1/S DNA Damage Checkpoints View Gene Set 7.475e-06 68 0.0001988 42 REACTOME - G1/S DNA Damage Checkpoints gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 8.513e-06 185 0.0002211 43 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 9.3e-06 96 0.0002361 44 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 View Gene Set 9.524e-06 77 0.0002364 45 REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 1.073e-05 98 0.000255 46 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements View Gene Set 1.059e-05 95 0.000255 46 REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER View Gene Set 1.417e-05 16 0.0003231 48 REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER View Gene Set 1.417e-05 16 0.0003231 48 REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set www.pathwaycomm...
Null Polymerase switching on the C-strand of the telomere View Gene Set 1.669e-05 14 0.0003584 50 REACTOME - Polymerase switching on the C-strand of the telomere gene set www.pathwaycomm...
Null Polymerase switching View Gene Set 1.669e-05 14 0.0003584 50 REACTOME - Polymerase switching gene set www.pathwaycomm...
Null Leading Strand Synthesis View Gene Set 1.669e-05 14 0.0003584 50 REACTOME - Leading Strand Synthesis gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 1.88e-05 69 0.0003962 53 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 1.916e-05 138 0.0003963 54 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 2.044e-05 158 0.000403 55 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint View Gene Set 2.073e-05 62 0.000403 55 REACTOME - p53-Independent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Independent DNA Damage Response View Gene Set 2.073e-05 62 0.000403 55 REACTOME - p53-Independent DNA Damage Response gene set www.pathwaycomm...
Null Cyclin E associated events during G1/S transition View Gene Set 2.093e-05 64 0.000403 55 REACTOME - Cyclin E associated events during G1/S transition gene set www.pathwaycomm...
Null Kinesins View Gene Set 2.987e-05 22 0.0005654 59 REACTOME - Kinesins gene set www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER View Gene Set 3.297e-05 15 0.0006036 60 REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase View Gene Set 3.297e-05 15 0.0006036 60 REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A View Gene Set 4.429e-05 61 0.0007853 62 REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set www.pathwaycomm...
Null Signaling in Immune system View Gene Set 4.387e-05 404 0.0007853 62 REACTOME - Signaling in Immune system gene set www.pathwaycomm...
Null Processive synthesis on the lagging strand View Gene Set 5.218e-05 15 0.0009108 64 REACTOME - Processive synthesis on the lagging strand gene set www.pathwaycomm...
Null Phosphorylation of Emi1 View Gene Set 5.621e-05 12 0.000966 65 REACTOME - Phosphorylation of Emi1 gene set www.pathwaycomm...
Null Phosphorylation of the APC/C View Gene Set 6.172e-05 26 0.001043 66 REACTOME - Phosphorylation of the APC/C gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1 View Gene Set 6.352e-05 59 0.001043 66 REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D View Gene Set 6.352e-05 59 0.001043 66 REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set www.pathwaycomm...
Null Unwinding of DNA View Gene Set 6.455e-05 11 0.001045 69 REACTOME - Unwinding of DNA gene set www.pathwaycomm...
Null Factors involved in megakaryocyte development and platelet production View Gene Set 7.547e-05 120 0.001204 70 REACTOME - Factors involved in megakaryocyte development and platelet production gene set www.pathwaycomm...
Null Toll Like Receptor 3 (TLR3) Cascade View Gene Set 8.293e-05 59 0.001305 71 REACTOME - Toll Like Receptor 3 (TLR3) Cascade gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Securin View Gene Set 8.651e-05 72 0.001342 72 REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set www.pathwaycomm...
Null Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex View Gene Set 8.913e-05 6 0.001348 73 REACTOME - Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex gene set www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry View Gene Set 9.051e-05 62 0.001348 73 REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set www.pathwaycomm...
Null CDK-mediated phosphorylation and removal of Cdc6 View Gene Set 8.966e-05 58 0.001348 73 REACTOME - CDK-mediated phosphorylation and removal of Cdc6 gene set www.pathwaycomm...
Null p53-Dependent G1/S DNA damage checkpoint View Gene Set 0.000101 64 0.001466 76 REACTOME - p53-Dependent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Dependent G1 DNA Damage Response View Gene Set 0.000101 64 0.001466 76 REACTOME - p53-Dependent G1 DNA Damage Response gene set www.pathwaycomm...
Null Polo-like kinase mediated events View Gene Set 0.0001033 10 0.00148 78 REACTOME - Polo-like kinase mediated events gene set www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex View Gene Set 0.0001076 66 0.001522 79 REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set www.pathwaycomm...
Null Removal of the Flap Intermediate View Gene Set 0.0001205 14 0.001683 80 REACTOME - Removal of the Flap Intermediate gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 0.0001295 55 0.001786 81 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null Stabilization of p53 View Gene Set 0.0001362 61 0.001855 82 REACTOME - Stabilization of p53 gene set www.pathwaycomm...
Null RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways View Gene Set 0.0001538 70 0.00207 83 REACTOME - RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways gene set www.pathwaycomm...
Null Regulation of ornithine decarboxylase (ODC) View Gene Set 0.0001836 62 0.002441 84 REACTOME - Regulation of ornithine decarboxylase (ODC) gene set www.pathwaycomm...
Null Autodegradation of the E3 ubiquitin ligase COP1 View Gene Set 0.0001991 60 0.002616 85 REACTOME - Autodegradation of the E3 ubiquitin ligase COP1 gene set www.pathwaycomm...
Null Regulation of activated PAK-2p34 by proteasome mediated degradation View Gene Set 0.0002158 57 0.002803 86 REACTOME - Regulation of activated PAK-2p34 by proteasome mediated degradation gene set www.pathwaycomm...
Null Inhibition of replication initiation of damaged DNA by Rb/E2F1 View Gene Set 0.0002384 7 0.00306 87 REACTOME - Inhibition of replication initiation of damaged DNA by Rb/E2F1 gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 0.0002804 51 0.003559 88 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null Toll Like Receptor 9 (TLR9) Cascade View Gene Set 0.0002887 70 0.003624 89 REACTOME - Toll Like Receptor 9 (TLR9) Cascade gene set www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C View Gene Set 0.0002922 67 0.003626 90 REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set www.pathwaycomm...
Null Global Genomic NER (GG-NER) View Gene Set 0.0003015 35 0.003701 91 REACTOME - Global Genomic NER (GG-NER) gene set www.pathwaycomm...
Null MyD88 dependent cascade initiated on endosome View Gene Set 0.0003087 65 0.003707 92 REACTOME - MyD88 dependent cascade initiated on endosome gene set www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1 View Gene Set 0.0003067 60 0.003707 92 REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set www.pathwaycomm...
Null Vif-mediated degradation of APOBEC3G View Gene Set 0.0003395 61 0.004034 94 REACTOME - Vif-mediated degradation of APOBEC3G gene set www.pathwaycomm...
Null Degradation of beta-catenin by the destruction complex View Gene Set 0.0003607 56 0.004197 95 REACTOME - Degradation of beta-catenin by the destruction complex gene set www.pathwaycomm...
Null Signaling by Wnt View Gene Set 0.0003607 56 0.004197 95 REACTOME - Signaling by Wnt gene set www.pathwaycomm...
Null TRAF6 Mediated Induction of proinflammatory cytokines View Gene Set 0.0003786 53 0.004315 97 REACTOME - TRAF6 Mediated Induction of proinflammatory cytokines gene set www.pathwaycomm...
Null Double-Strand Break Repair View Gene Set 0.0003755 27 0.004315 97 REACTOME - Double-Strand Break Repair gene set www.pathwaycomm...
Null MyD88-independent cascade initiated on plasma membrane View Gene Set 0.000383 61 0.004321 99 REACTOME - MyD88-independent cascade initiated on plasma membrane gene set www.pathwaycomm...
Null MAP kinase activation in TLR cascade View Gene Set 0.0004172 33 0.00466 100 REACTOME - MAP kinase activation in TLR cascade gene set www.pathwaycomm...
Null Negative regulators of RIG-I/MDA5 signaling View Gene Set 0.0004271 28 0.004724 101 REACTOME - Negative regulators of RIG-I/MDA5 signaling gene set www.pathwaycomm...
Null Homologous Recombination Repair View Gene Set 0.0004775 22 0.005178 102 REACTOME - Homologous Recombination Repair gene set www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks View Gene Set 0.0004775 22 0.005178 102 REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set www.pathwaycomm...
Null Interactions of Vpr with host cellular proteins View Gene Set 0.0005736 34 0.006044 104 REACTOME - Interactions of Vpr with host cellular proteins gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 0.0005705 49 0.006044 104 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null Vpu mediated degradation of CD4 View Gene Set 0.0005639 57 0.006044 104 REACTOME - Vpu mediated degradation of CD4 gene set www.pathwaycomm...
Null Telomere C-strand synthesis initiation View Gene Set 0.0006324 6 0.006481 107 REACTOME - Telomere C-strand synthesis initiation gene set www.pathwaycomm...
Null TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation View Gene Set 0.0006249 64 0.006481 107 REACTOME - TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation gene set www.pathwaycomm...
Null DNA replication initiation View Gene Set 0.0006324 6 0.006481 107 REACTOME - DNA replication initiation gene set www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0) View Gene Set 0.0006719 63 0.006823 110 REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set www.pathwaycomm...
Null DNA Repair View Gene Set 0.0007337 108 0.007383 111 REACTOME - DNA Repair gene set www.pathwaycomm...
Null Activated TLR4 signalling View Gene Set 0.0007628 75 0.007607 112 REACTOME - Activated TLR4 signalling gene set www.pathwaycomm...
Null Toll Like Receptor 7/8 (TLR7/8) Cascade View Gene Set 0.0007885 67 0.007794 113 REACTOME - Toll Like Receptor 7/8 (TLR7/8) Cascade gene set www.pathwaycomm...
Null G2/M DNA replication checkpoint View Gene Set 0.0008757 5 0.008581 114 REACTOME - G2/M DNA replication checkpoint gene set www.pathwaycomm...
Null NFkB and MAP kinases activation mediated by TLR4 signaling repertoire View Gene Set 0.0008996 57 0.008738 115 REACTOME - NFkB and MAP kinases activation mediated by TLR4 signaling repertoire gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 0.0009683 73 0.009244 116 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Cyclin B2 mediated events View Gene Set 0.0009643 5 0.009244 116 REACTOME - Cyclin B2 mediated events gene set www.pathwaycomm...
Null Toll Like Receptor 10 (TLR10) Cascade View Gene Set 0.001083 63 0.01009 118 REACTOME - Toll Like Receptor 10 (TLR10) Cascade gene set www.pathwaycomm...
Null MyD88 cascade initiated on plasma membrane View Gene Set 0.001083 62 0.01009 118 REACTOME - MyD88 cascade initiated on plasma membrane gene set www.pathwaycomm...
Null Mitotic Telophase /Cytokinesis View Gene Set 0.001093 10 0.01009 118 REACTOME - Mitotic Telophase /Cytokinesis gene set www.pathwaycomm...
Null Destabilization of mRNA by KSRP View Gene Set 0.001088 18 0.01009 118 REACTOME - Destabilization of mRNA by KSRP gene set www.pathwaycomm...
Null Recruitment of NuMA to mitotic centrosomes View Gene Set 0.001119 14 0.01024 122 REACTOME - Recruitment of NuMA to mitotic centrosomes gene set www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts View Gene Set 0.001171 36 0.01055 123 REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set www.pathwaycomm...
Null Toll Like Receptor 5 (TLR5) Cascade View Gene Set 0.001168 63 0.01055 123 REACTOME - Toll Like Receptor 5 (TLR5) Cascade gene set www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs View Gene Set 0.001198 31 0.0107 125 REACTOME - Vpr-mediated nuclear import of PICs gene set www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA View Gene Set 0.001309 33 0.0116 126 REACTOME - Transport of the SLBP Dependant Mature mRNA gene set www.pathwaycomm...
Null SCF(Skp2)-mediated degradation of p27/p21 View Gene Set 0.001352 52 0.01189 127 REACTOME - SCF(Skp2)-mediated degradation of p27/p21 gene set www.pathwaycomm...
Null mRNA Splicing - Major Pathway View Gene Set 0.001404 107 0.0119 128 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 0.001404 107 0.0119 128 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null MyD88:Mal cascade initiated on plasma membrane View Gene Set 0.001401 65 0.0119 128 REACTOME - MyD88:Mal cascade initiated on plasma membrane gene set www.pathwaycomm...
Null Signal transduction by L1 View Gene Set 0.001378 35 0.0119 128 REACTOME - Signal transduction by L1 gene set www.pathwaycomm...
Null Mitotic Metaphase/Anaphase Transition View Gene Set 0.001406 8 0.0119 128 REACTOME - Mitotic Metaphase/Anaphase Transition gene set www.pathwaycomm...
Null Deadenylation of mRNA View Gene Set 0.001563 22 0.01313 133 REACTOME - Deadenylation of mRNA gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 0.001601 72 0.01334 134 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...
Null Signalling by NGF View Gene Set 0.001864 146 0.01542 135 REACTOME - Signalling by NGF gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 0.001908 32 0.01555 136 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null Toll Like Receptor 2 Cascade View Gene Set 0.001899 68 0.01555 136 REACTOME - Toll Like Receptor 2 Cascade gene set www.pathwaycomm...
Null Mitotic Spindle Checkpoint View Gene Set 0.001939 19 0.01569 138 REACTOME - Mitotic Spindle Checkpoint gene set www.pathwaycomm...
Null Nuclear import of Rev protein View Gene Set 0.001984 30 0.01574 139 REACTOME - Nuclear import of Rev protein gene set www.pathwaycomm...
Null Intrinsic Pathway for Apoptosis View Gene Set 0.001987 31 0.01574 139 REACTOME - Intrinsic Pathway for Apoptosis gene set www.pathwaycomm...
Null Unfolded Protein Response View Gene Set 0.001983 63 0.01574 139 REACTOME - Unfolded Protein Response gene set www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere View Gene Set 0.002216 11 0.01743 142 REACTOME - Processive synthesis on the C-strand of the telomere gene set www.pathwaycomm...
Null Interactions of Rev with host cellular proteins View Gene Set 0.002242 33 0.01751 143 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null Gab1 signalosome View Gene Set 0.002275 10 0.01765 144 REACTOME - Gab1 signalosome gene set www.pathwaycomm...
Null Cyclin A/B1 associated events during G2/M transition View Gene Set 0.002297 19 0.01769 145 REACTOME - Cyclin A/B1 associated events during G2/M transition gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 0.002357 35 0.01802 146 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null Pentose phosphate pathway (hexose monophosphate shunt) View Gene Set 0.002372 6 0.01802 146 REACTOME - Pentose phosphate pathway (hexose monophosphate shunt) gene set www.pathwaycomm...
Null Signalling to ERKs View Gene Set 0.002545 30 0.01921 148 REACTOME - Signalling to ERKs gene set www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus View Gene Set 0.002617 29 0.01962 149 REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 0.002642 32 0.01968 150 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null Activation of NOXA and translocation to mitochondria View Gene Set 0.003507 4 0.02579 151 REACTOME - Activation of NOXA and translocation to mitochondria gene set www.pathwaycomm...
Null Signalling to RAS View Gene Set 0.003509 22 0.02579 151 REACTOME - Signalling to RAS gene set www.pathwaycomm...
Null Regulation of Apoptosis View Gene Set 0.00357 66 0.02589 153 REACTOME - Regulation of Apoptosis gene set www.pathwaycomm...
Null Signaling by Insulin receptor View Gene Set 0.003568 79 0.02589 153 REACTOME - Signaling by Insulin receptor gene set www.pathwaycomm...
Null ERK1 activation View Gene Set 0.003614 3 0.02604 155 REACTOME - ERK1 activation gene set www.pathwaycomm...
Null Transcription View Gene Set 0.003746 178 0.02648 156 REACTOME - Transcription gene set www.pathwaycomm...
Null ATM mediated phosphorylation of repair proteins View Gene Set 0.003728 6 0.02648 156 REACTOME - ATM mediated phosphorylation of repair proteins gene set www.pathwaycomm...
Null ATM mediated response to DNA double-strand break View Gene Set 0.003728 6 0.02648 156 REACTOME - ATM mediated response to DNA double-strand break gene set www.pathwaycomm...
Null activated TAK1 mediates p38 MAPK activation View Gene Set 0.003888 9 0.02731 159 REACTOME - activated TAK1 mediates p38 MAPK activation gene set www.pathwaycomm...
Null Homologous DNA pairing and strand exchange View Gene Set 0.004147 7 0.02895 160 REACTOME - Homologous DNA pairing and strand exchange gene set www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components View Gene Set 0.004287 18 0.02938 161 REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex View Gene Set 0.004287 18 0.02938 161 REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set www.pathwaycomm...
Null NGF signalling via TRKA from the plasma membrane View Gene Set 0.004279 110 0.02938 161 REACTOME - NGF signalling via TRKA from the plasma membrane gene set www.pathwaycomm...
Null Meiotic Recombination View Gene Set 0.004346 42 0.0296 164 REACTOME - Meiotic Recombination gene set www.pathwaycomm...
Null Phosphorylation of proteins involved in G1/S transition by active Cyclin E:Cdk2 complexes View Gene Set 0.004595 4 0.0311 165 REACTOME - Phosphorylation of proteins involved in G1/S transition by active Cyclin E:Cdk2 complexes gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 0.004763 103 0.03205 166 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null Signal attenuation View Gene Set 0.004879 11 0.03263 167 REACTOME - Signal attenuation gene set www.pathwaycomm...
Null Removal of the Flap Intermediate from the C-strand View Gene Set 0.004988 10 0.03316 168 REACTOME - Removal of the Flap Intermediate from the C-strand gene set www.pathwaycomm...
Null Signaling by EGFR View Gene Set 0.005049 51 0.03337 169 REACTOME - Signaling by EGFR gene set www.pathwaycomm...
Null Activation of BH3-only proteins View Gene Set 0.00549 17 0.03607 170 REACTOME - Activation of BH3-only proteins gene set www.pathwaycomm...
Null APC-Cdc20 mediated degradation of Nek2A View Gene Set 0.006088 23 0.03977 171 REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set www.pathwaycomm...
Null Toll Like Receptor 4 (TLR4) Cascade View Gene Set 0.006622 79 0.04301 172 REACTOME - Toll Like Receptor 4 (TLR4) Cascade gene set www.pathwaycomm...
Null Deadenylation-dependent mRNA decay View Gene Set 0.007136 46 0.04608 173 REACTOME - Deadenylation-dependent mRNA decay gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1323 View Gene Set 1.342e-29 2071 9.082e-27 1 microRNA targets for hsa-miR-1323 from miranda.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 6.593e-29 2210 2.232e-26 2 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 5.108e-28 2420 1.153e-25 3 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 1.534e-27 3575 2.596e-25 4 microRNA targets for hsa-miR-590-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 2.874e-27 3130 3.891e-25 5 microRNA targets for hsa-miR-548c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548n View Gene Set 1.87e-26 3830 2.11e-24 6 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-548o View Gene Set 6.459e-26 2216 6.247e-24 7 microRNA targets for hsa-miR-548o from miranda.targets www.mirbase.org...
Null hsa-miR-548f View Gene Set 2.433e-25 2082 2.059e-23 8 microRNA targets for hsa-miR-548f from miranda.targets www.mirbase.org...
Null hsa-miR-548e View Gene Set 3.622e-25 2325 2.724e-23 9 microRNA targets for hsa-miR-548e from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 1.005e-24 2711 6.806e-23 10 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 2.644e-24 2925 1.627e-22 11 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 6.229e-24 2574 3.514e-22 12 microRNA targets for hsa-miR-524-5p from miranda.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 7.264e-24 2122 3.783e-22 13 microRNA targets for hsa-miR-20b from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 1.469e-23 3270 7.103e-22 14 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548g View Gene Set 1.118e-22 2114 5.044e-21 15 microRNA targets for hsa-miR-548g from miranda.targets www.mirbase.org...
Null hsa-miR-548p View Gene Set 5.199e-22 2743 2.2e-20 16 microRNA targets for hsa-miR-548p from miranda.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 9.474e-22 1772 3.615e-20 17 microRNA targets for hsa-miR-1 from miranda.targets www.mirbase.org...
Null hsa-miR-1283 View Gene Set 9.613e-22 1960 3.615e-20 17 microRNA targets for hsa-miR-1283 from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 1.829e-21 3124 6.518e-20 19 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 2.444e-21 1858 8.272e-20 20 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 3.841e-21 2900 1.238e-19 21 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 6.579e-21 2745 2.024e-19 22 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 9.621e-21 3175 2.832e-19 23 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 2.479e-20 2652 6.993e-19 24 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-548m View Gene Set 2.936e-20 2295 7.95e-19 25 microRNA targets for hsa-miR-548m from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 3.308e-20 2983 8.612e-19 26 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 3.8e-20 2860 9.528e-19 27 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 4.849e-20 2324 1.172e-18 28 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-548l View Gene Set 1.21e-19 2599 2.824e-18 29 microRNA targets for hsa-miR-548l from miranda.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 1.935e-19 2061 4.366e-18 30 microRNA targets for hsa-miR-520d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 4.019e-19 1605 8.776e-18 31 microRNA targets for hsa-miR-206 from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 5.327e-19 2312 1.127e-17 32 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 5.717e-19 2909 1.173e-17 33 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 9.021e-19 2246 1.796e-17 34 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 1.088e-18 2173 1.99e-17 35 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 1.088e-18 2173 1.99e-17 35 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 1.059e-18 1794 1.99e-17 35 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 1.89e-18 1837 3.367e-17 38 microRNA targets for hsa-miR-519a from miranda.targets www.mirbase.org...
Null hsa-miR-1252 View Gene Set 2.745e-18 3125 4.765e-17 39 microRNA targets for hsa-miR-1252 from miranda.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 9.348e-18 1631 1.582e-16 40 microRNA targets for hsa-miR-335 from miranda.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 1.337e-17 1793 2.207e-16 41 microRNA targets for hsa-miR-495 from miranda.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 1.542e-17 1335 2.485e-16 42 microRNA targets for hsa-miR-613 from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 1.727e-17 1859 2.72e-16 43 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 2.188e-17 2539 3.366e-16 44 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 3.587e-17 1013 5.396e-16 45 microRNA targets for hsa-miR-569 from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 7.918e-17 1802 1.165e-15 46 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 9.221e-17 2017 1.328e-15 47 microRNA targets for hsa-miR-19b from miranda.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 1.464e-16 1040 2.065e-15 48 microRNA targets for hsa-miR-606 from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 3.126e-16 1789 4.319e-15 49 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-1244 View Gene Set 3.211e-16 2675 4.348e-15 50 microRNA targets for hsa-miR-1244 from miranda.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 3.566e-16 1919 4.733e-15 51 microRNA targets for hsa-miR-452 from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 4.643e-16 1933 5.93e-15 52 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 4.604e-16 1949 5.93e-15 52 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 4.797e-16 1619 6.014e-15 54 microRNA targets for hsa-miR-200a from miranda.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 5.088e-16 1786 6.229e-15 55 microRNA targets for hsa-miR-519b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 5.152e-16 1874 6.229e-15 55 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 6.56e-16 1773 7.791e-15 57 microRNA targets for hsa-miR-141 from miranda.targets www.mirbase.org...
Null hsa-miR-1183 View Gene Set 6.686e-16 2417 7.805e-15 58 microRNA targets for hsa-miR-1183 from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 8.551e-16 2091 9.6e-15 59 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 8.543e-16 2504 9.6e-15 59 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 8.65e-16 2077 9.6e-15 59 microRNA targets for hsa-miR-93 from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 9.112e-16 1804 9.95e-15 62 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 1.089e-15 1511 1.17e-14 63 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 1.607e-15 2189 1.674e-14 64 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 1.599e-15 2438 1.674e-14 64 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 2.348e-15 2322 2.408e-14 66 microRNA targets for hsa-miR-607 from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 2.761e-15 1449 2.79e-14 67 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 2.935e-15 1971 2.922e-14 68 microRNA targets for hsa-miR-582-5p from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 3.414e-15 1774 3.35e-14 69 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 4.779e-15 1494 4.622e-14 70 microRNA targets for hsa-miR-576-5p from miranda.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 5.051e-15 2011 4.816e-14 71 microRNA targets for hsa-miR-519c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 6.077e-15 1416 5.714e-14 72 microRNA targets for hsa-miR-216b from miranda.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 6.841e-15 2056 6.344e-14 73 microRNA targets for hsa-miR-302d from miranda.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 9.359e-15 1309 8.562e-14 74 microRNA targets for hsa-miR-499-5p from miranda.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 1.863e-14 2421 1.682e-13 75 microRNA targets for hsa-miR-586 from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 2.23e-14 2384 1.986e-13 76 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 2.492e-14 1660 2.191e-13 77 microRNA targets for hsa-miR-448 from miranda.targets www.mirbase.org...
Null hsa-miR-1305 View Gene Set 3.242e-14 1619 2.814e-13 78 microRNA targets for hsa-miR-1305 from miranda.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 3.689e-14 2301 3.162e-13 79 microRNA targets for hsa-miR-15a from miranda.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 3.865e-14 1605 3.23e-13 80 microRNA targets for hsa-miR-518a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-527 View Gene Set 3.865e-14 1605 3.23e-13 80 microRNA targets for hsa-miR-527 from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 4.012e-14 2681 3.313e-13 82 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 4.136e-14 1687 3.374e-13 83 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 4.454e-14 1682 3.59e-13 84 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 4.555e-14 2072 3.628e-13 85 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 6.489e-14 1946 5.108e-13 86 microRNA targets for hsa-miR-181a from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 7.626e-14 1921 5.935e-13 87 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 8.844e-14 1644 6.804e-13 88 microRNA targets for hsa-miR-300 from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 9.218e-14 2114 7.012e-13 89 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 1.073e-13 2090 8.07e-13 90 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 1.488e-13 1707 1.107e-12 91 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 1.536e-13 1844 1.13e-12 92 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 1.829e-13 1767 1.332e-12 93 microRNA targets for hsa-miR-144 from miranda.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 2.412e-13 2140 1.737e-12 94 microRNA targets for hsa-miR-520g from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 2.692e-13 2008 1.918e-12 95 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 2.825e-13 1638 1.992e-12 96 microRNA targets for hsa-miR-381 from miranda.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 2.944e-13 1180 2.055e-12 97 microRNA targets for hsa-miR-34b from miranda.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 3.471e-13 2054 2.398e-12 98 microRNA targets for hsa-miR-302a from miranda.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 3.814e-13 1144 2.595e-12 99 microRNA targets for hsa-miR-194 from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 3.833e-13 1646 2.595e-12 99 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-1243 View Gene Set 4.135e-13 1196 2.772e-12 101 microRNA targets for hsa-miR-1243 from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 4.665e-13 1861 3.096e-12 102 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-513c View Gene Set 5.457e-13 1451 3.587e-12 103 microRNA targets for hsa-miR-513c from miranda.targets www.mirbase.org...
Null hsa-miR-154 View Gene Set 6.969e-13 1008 4.537e-12 104 microRNA targets for hsa-miR-154 from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 7.961e-13 2118 5.084e-12 105 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 7.916e-13 2046 5.084e-12 105 microRNA targets for hsa-miR-302c from miranda.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 1.143e-12 1713 7.234e-12 107 microRNA targets for hsa-miR-377 from miranda.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 1.258e-12 1842 7.811e-12 108 microRNA targets for hsa-miR-520c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 1.252e-12 1452 7.811e-12 108 microRNA targets for hsa-miR-633 from miranda.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 1.589e-12 2159 9.781e-12 110 microRNA targets for hsa-miR-9 from miranda.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 1.825e-12 1429 1.113e-11 111 microRNA targets for hsa-miR-376c from miranda.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 1.933e-12 1792 1.168e-11 112 microRNA targets for hsa-miR-30e from miranda.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 2.248e-12 1728 1.347e-11 113 microRNA targets for hsa-miR-520e from miranda.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 2.368e-12 1136 1.406e-11 114 microRNA targets for hsa-miR-491-3p from miranda.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 2.86e-12 2080 1.669e-11 115 microRNA targets for hsa-miR-320a from miranda.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 2.86e-12 2080 1.669e-11 115 microRNA targets for hsa-miR-320b from miranda.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 2.951e-12 2392 1.708e-11 117 microRNA targets for hsa-miR-424 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 3.303e-12 2212 1.895e-11 118 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 3.73e-12 2295 2.122e-11 119 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 4.241e-12 1611 2.392e-11 120 microRNA targets for hsa-miR-30a from miranda.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 4.861e-12 1101 2.72e-11 121 microRNA targets for hsa-miR-410 from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 6.129e-12 2065 3.401e-11 122 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 6.489e-12 1832 3.571e-11 123 microRNA targets for hsa-miR-372 from miranda.targets www.mirbase.org...
Null hsa-miR-1259 View Gene Set 6.832e-12 1309 3.7e-11 124 microRNA targets for hsa-miR-1259 from miranda.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 6.822e-12 2258 3.7e-11 124 microRNA targets for hsa-miR-16 from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 6.909e-12 1877 3.712e-11 126 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 7.595e-12 1316 4.032e-11 127 microRNA targets for hsa-miR-217 from miranda.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 7.624e-12 2061 4.032e-11 127 microRNA targets for hsa-miR-373 from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 8.124e-12 2025 4.263e-11 129 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 9.089e-12 1858 4.733e-11 130 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 1.149e-11 1524 5.939e-11 131 microRNA targets for hsa-miR-587 from miranda.targets www.mirbase.org...
Null hsa-miR-136 View Gene Set 1.194e-11 2134 6.124e-11 132 microRNA targets for hsa-miR-136 from miranda.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 1.348e-11 2207 6.861e-11 133 microRNA targets for hsa-miR-580 from miranda.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 1.389e-11 1176 7.015e-11 134 microRNA targets for hsa-miR-455-3p from miranda.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 1.429e-11 1494 7.167e-11 135 microRNA targets for hsa-miR-18a from miranda.targets www.mirbase.org...
Null hsa-miR-548b-3p View Gene Set 1.525e-11 1349 7.593e-11 136 microRNA targets for hsa-miR-548b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-450b-5p View Gene Set 1.713e-11 2243 8.463e-11 137 microRNA targets for hsa-miR-450b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 1.943e-11 1414 9.53e-11 138 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 2.203e-11 873 1.073e-10 139 microRNA targets for hsa-miR-889 from miranda.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 2.607e-11 1259 1.261e-10 140 microRNA targets for hsa-miR-132 from miranda.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 2.885e-11 2080 1.385e-10 141 microRNA targets for hsa-miR-497 from miranda.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 2.927e-11 1860 1.396e-10 142 microRNA targets for hsa-miR-320c from miranda.targets www.mirbase.org...
Null hsa-miR-768-5p View Gene Set 2.994e-11 2575 1.417e-10 143 microRNA targets for hsa-miR-768-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 3.367e-11 1792 1.583e-10 144 microRNA targets for hsa-miR-30c from miranda.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 3.575e-11 1222 1.669e-10 145 microRNA targets for hsa-miR-139-5p from miranda.targets www.mirbase.org...
Null hsa-miR-600 View Gene Set 4.302e-11 1431 1.995e-10 146 microRNA targets for hsa-miR-600 from miranda.targets www.mirbase.org...
Null hsa-miR-1324 View Gene Set 4.548e-11 2051 2.095e-10 147 microRNA targets for hsa-miR-1324 from miranda.targets www.mirbase.org...
Null hsa-miR-1284 View Gene Set 5.392e-11 1108 2.466e-10 148 microRNA targets for hsa-miR-1284 from miranda.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 7.375e-11 1886 3.351e-10 149 microRNA targets for hsa-miR-494 from miranda.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 8.609e-11 2219 3.886e-10 150 microRNA targets for hsa-miR-195 from miranda.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 9.596e-11 1379 4.302e-10 151 microRNA targets for hsa-miR-888 from miranda.targets www.mirbase.org...
Null hsa-miR-383 View Gene Set 1.002e-10 1319 4.464e-10 152 microRNA targets for hsa-miR-383 from miranda.targets www.mirbase.org...
Null hsa-miR-573 View Gene Set 1.061e-10 2023 4.694e-10 153 microRNA targets for hsa-miR-573 from miranda.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 1.317e-10 2308 5.79e-10 154 microRNA targets for hsa-miR-539 from miranda.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 1.362e-10 1232 5.912e-10 155 microRNA targets for hsa-miR-199a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-199b-3p View Gene Set 1.362e-10 1232 5.912e-10 155 microRNA targets for hsa-miR-199b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 1.381e-10 2253 5.957e-10 157 microRNA targets for hsa-miR-15b from miranda.targets www.mirbase.org...
Null hsa-miR-651 View Gene Set 1.417e-10 1234 6.07e-10 158 microRNA targets for hsa-miR-651 from miranda.targets www.mirbase.org...
Null hsa-miR-297 View Gene Set 1.47e-10 1497 6.261e-10 159 microRNA targets for hsa-miR-297 from miranda.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 1.503e-10 1331 6.361e-10 160 microRNA targets for hsa-miR-155 from miranda.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 1.736e-10 1500 7.3e-10 161 microRNA targets for hsa-miR-30d from miranda.targets www.mirbase.org...
Null hsa-miR-592 View Gene Set 1.961e-10 1209 8.197e-10 162 microRNA targets for hsa-miR-592 from miranda.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 2.051e-10 1700 8.518e-10 163 microRNA targets for hsa-miR-520b from miranda.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 2.121e-10 1719 8.754e-10 164 microRNA targets for hsa-miR-320d from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 2.282e-10 1454 9.363e-10 165 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-624 View Gene Set 2.377e-10 1486 9.696e-10 166 microRNA targets for hsa-miR-624 from miranda.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 2.464e-10 1695 9.99e-10 167 microRNA targets for hsa-miR-30b from miranda.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 2.626e-10 1504 1.058e-09 168 microRNA targets for hsa-miR-148a from miranda.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 2.719e-10 1344 1.089e-09 169 microRNA targets for hsa-miR-223 from miranda.targets www.mirbase.org...
Null hsa-miR-1276 View Gene Set 2.771e-10 1352 1.104e-09 170 microRNA targets for hsa-miR-1276 from miranda.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 3.048e-10 937 1.207e-09 171 microRNA targets for hsa-miR-323-3p from miranda.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 3.102e-10 1229 1.221e-09 172 microRNA targets for hsa-miR-485-3p from miranda.targets www.mirbase.org...
Null hsa-miR-646 View Gene Set 3.513e-10 1606 1.375e-09 173 microRNA targets for hsa-miR-646 from miranda.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 3.554e-10 1491 1.383e-09 174 microRNA targets for hsa-miR-148b from miranda.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 3.735e-10 1053 1.445e-09 175 microRNA targets for hsa-miR-21 from miranda.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 3.972e-10 1044 1.528e-09 176 microRNA targets for hsa-miR-496 from miranda.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 4.276e-10 1901 1.635e-09 177 microRNA targets for hsa-miR-520d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 5.681e-10 932 2.161e-09 178 microRNA targets for hsa-miR-628-3p from miranda.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 6.153e-10 2124 2.327e-09 179 microRNA targets for hsa-miR-330-3p from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 6.796e-10 1644 2.556e-09 180 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-199b-5p View Gene Set 6.854e-10 1567 2.564e-09 181 microRNA targets for hsa-miR-199b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-425 View Gene Set 6.987e-10 821 2.599e-09 182 microRNA targets for hsa-miR-425 from miranda.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 7.432e-10 1829 2.75e-09 183 microRNA targets for hsa-miR-488 from miranda.targets www.mirbase.org...
Null hsa-miR-1208 View Gene Set 8.025e-10 1127 2.953e-09 184 microRNA targets for hsa-miR-1208 from miranda.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 8.614e-10 1590 3.152e-09 185 microRNA targets for hsa-miR-520a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 9.063e-10 1494 3.299e-09 186 microRNA targets for hsa-miR-18b from miranda.targets www.mirbase.org...
Null hsa-miR-1299 View Gene Set 1.307e-09 2168 4.73e-09 187 microRNA targets for hsa-miR-1299 from miranda.targets www.mirbase.org...
Null hsa-miR-1272 View Gene Set 1.535e-09 1955 5.526e-09 188 microRNA targets for hsa-miR-1272 from miranda.targets www.mirbase.org...
Null hsa-miR-648 View Gene Set 1.66e-09 772 5.946e-09 189 microRNA targets for hsa-miR-648 from miranda.targets www.mirbase.org...
Null hsa-miR-151-3p View Gene Set 1.716e-09 785 6.114e-09 190 microRNA targets for hsa-miR-151-3p from miranda.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 2.049e-09 1136 7.264e-09 191 microRNA targets for hsa-miR-384 from miranda.targets www.mirbase.org...
Null hsa-miR-520h View Gene Set 2.692e-09 1820 9.491e-09 192 microRNA targets for hsa-miR-520h from miranda.targets www.mirbase.org...
Null hsa-miR-583 View Gene Set 2.718e-09 2115 9.533e-09 193 microRNA targets for hsa-miR-583 from miranda.targets www.mirbase.org...
Null hsa-miR-1278 View Gene Set 2.802e-09 1219 9.779e-09 194 microRNA targets for hsa-miR-1278 from miranda.targets www.mirbase.org...
Null hsa-miR-1826 View Gene Set 3.587e-09 1313 1.245e-08 195 microRNA targets for hsa-miR-1826 from miranda.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 4.006e-09 1272 1.384e-08 196 microRNA targets for hsa-miR-101 from miranda.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 4.026e-09 1206 1.384e-08 196 microRNA targets for hsa-miR-590-5p from miranda.targets www.mirbase.org...
Null hsa-miR-135a View Gene Set 4.263e-09 2105 1.458e-08 198 microRNA targets for hsa-miR-135a from miranda.targets www.mirbase.org...
Null hsa-miR-1206 View Gene Set 4.367e-09 1455 1.486e-08 199 microRNA targets for hsa-miR-1206 from miranda.targets www.mirbase.org...
Null hsa-miR-542-3p View Gene Set 4.788e-09 1391 1.621e-08 200 microRNA targets for hsa-miR-542-3p from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1 View Gene Set 2.23e-08 659 1.586e-05 1 microRNA targets for hsa-miR-1 from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 6.112e-07 899 0.0002173 2 microRNA targets for hsa-miR-548a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 6.34e-06 683 0.001503 3 microRNA targets for hsa-miR-206 from mirbase.targets www.mirbase.org...
Null hsa-let-7f-1* View Gene Set 4.454e-05 751 0.005278 4 microRNA targets for hsa-let-7f-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 2.992e-05 661 0.005278 4 microRNA targets for hsa-miR-142-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 3.84e-05 798 0.005278 4 microRNA targets for hsa-miR-301a from mirbase.targets www.mirbase.org...
Null hsa-let-7b* View Gene Set 0.0001863 772 0.01104 7 microRNA targets for hsa-let-7b* from mirbase.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 0.0001725 731 0.01104 7 microRNA targets for hsa-miR-194 from mirbase.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.0001318 763 0.01104 7 microRNA targets for hsa-miR-301b from mirbase.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.0001554 769 0.01104 7 microRNA targets for hsa-miR-454 from mirbase.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.0001472 796 0.01104 7 microRNA targets for hsa-miR-495 from mirbase.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.0001812 649 0.01104 7 microRNA targets for hsa-miR-568 from mirbase.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 0.0002907 793 0.0159 13 microRNA targets for hsa-miR-429 from mirbase.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 0.0004922 729 0.025 14 microRNA targets for hsa-miR-452 from mirbase.targets www.mirbase.org...
Null hsa-miR-154* View Gene Set 0.0005454 516 0.02585 15 microRNA targets for hsa-miR-154* from mirbase.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.0006568 871 0.02594 16 microRNA targets for hsa-miR-200c from mirbase.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 0.0006439 665 0.02594 16 microRNA targets for hsa-miR-217 from mirbase.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.000588 776 0.02594 16 microRNA targets for hsa-miR-34b from mirbase.targets www.mirbase.org...
Null hsa-let-7d* View Gene Set 0.0008607 781 0.0306 19 microRNA targets for hsa-let-7d* from mirbase.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 0.0008571 707 0.0306 19 microRNA targets for hsa-miR-613 from mirbase.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 0.001012 689 0.03425 21 microRNA targets for hsa-miR-487a from mirbase.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.001405 745 0.04539 22 microRNA targets for hsa-miR-216b from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

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Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-590-3p View Gene Set 2.528e-23 2046 1.398e-20 1 microRNA targets for hsa-miR-590-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 1.163e-22 1804 3.216e-20 2 microRNA targets for hsa-miR-548c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 3.536e-21 1107 6.518e-19 3 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set