AFA results for: miR.27bvsControl.ls

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Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
KEGG 03030	View Gene Set	2.658e-05	36	0.001896	1	DNA replication	www.genome.jp/d...
KEGG 04722	View Gene Set	1.14e-05	126	0.001896	1	Neurotrophin signaling pathway	www.genome.jp/d...
KEGG 04914	View Gene Set	2.256e-05	87	0.001896	1	Progesterone-mediated oocyte maturation	www.genome.jp/d...
KEGG 03018	View Gene Set	0.000124	59	0.006633	4	RNA degradation	www.genome.jp/d...
KEGG 00030	View Gene Set	0.0003756	27	0.01249	5	Pentose phosphate pathway	www.genome.jp/d...
KEGG 04110	View Gene Set	0.0004084	128	0.01249	5	Cell cycle	www.genome.jp/d...
KEGG 04114	View Gene Set	0.0003533	114	0.01249	5	Oocyte meiosis	www.genome.jp/d...
KEGG 05220	View Gene Set	0.001082	73	0.02896	8	Chronic myeloid leukemia	www.genome.jp/d...
KEGG 03420	View Gene Set	0.001579	44	0.03379	9	Nucleotide excision repair	www.genome.jp/d...
KEGG 04012	View Gene Set	0.001575	87	0.03379	9	ErbB signaling pathway	www.genome.jp/d...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
GO GO:0043226	View Gene Set	7.421e-20	9360	6.123e-16	1	organelle	amigo.geneontol...
GO GO:0043229	View Gene Set	9.166e-20	9346	6.123e-16	1	intracellular organelle	amigo.geneontol...
GO GO:0005634	View Gene Set	3.08e-19	5198	1.372e-15	3	nucleus	amigo.geneontol...
GO GO:0043227	View Gene Set	1.655e-18	8383	4.423e-15	4	membrane-bounded organelle	amigo.geneontol...
GO GO:0043231	View Gene Set	1.589e-18	8376	4.423e-15	4	intracellular membrane-bounded organelle	amigo.geneontol...
GO GO:0044424	View Gene Set	1.666e-17	10976	3.71e-14	6	intracellular part	amigo.geneontol...
GO GO:0005622	View Gene Set	4.281e-17	11329	8.17e-14	7	intracellular	amigo.geneontol...
GO GO:0070013	View Gene Set	9.489e-17	1845	1.585e-13	8	intracellular organelle lumen	amigo.geneontol...
GO GO:0031974	View Gene Set	1.398e-16	1917	2.075e-13	9	membrane-enclosed lumen	amigo.geneontol...
GO GO:0043233	View Gene Set	2.706e-16	1881	3.615e-13	10	organelle lumen	amigo.geneontol...
GO GO:0044446	View Gene Set	7.387e-16	5019	8.972e-13	11	intracellular organelle part	amigo.geneontol...
GO GO:0044428	View Gene Set	9.162e-16	1938	1.02e-12	12	nuclear part	amigo.geneontol...
GO GO:0044422	View Gene Set	1.326e-15	5089	1.363e-12	13	organelle part	amigo.geneontol...
GO GO:0090304	View Gene Set	2.613e-15	3724	2.494e-12	14	nucleic acid metabolic process	amigo.geneontol...
GO GO:0044260	View Gene Set	5.722e-15	5699	5.097e-12	15	cellular macromolecule metabolic process	amigo.geneontol...
GO GO:0006996	View Gene Set	9.14e-14	1501	7.632e-11	16	organelle organization	amigo.geneontol...
GO GO:0031981	View Gene Set	2.797e-13	1518	2.198e-10	17	nuclear lumen	amigo.geneontol...
GO GO:0043170	View Gene Set	7.369e-13	6274	5.47e-10	18	macromolecule metabolic process	amigo.geneontol...
GO GO:0005694	View Gene Set	1.453e-12	507	1.021e-09	19	chromosome	amigo.geneontol...
GO GO:0051276	View Gene Set	1.804e-12	548	1.205e-09	20	chromosome organization	amigo.geneontol...
GO GO:0043228	View Gene Set	5.388e-12	2690	3.272e-09	21	non-membrane-bounded organelle	amigo.geneontol...
GO GO:0043232	View Gene Set	5.388e-12	2690	3.272e-09	21	intracellular non-membrane-bounded organelle	amigo.geneontol...
GO GO:0034641	View Gene Set	7.526e-12	4584	4.371e-09	23	cellular nitrogen compound metabolic process	amigo.geneontol...
GO GO:0010467	View Gene Set	9.717e-12	3806	5.409e-09	24	gene expression	amigo.geneontol...
GO GO:0032991	View Gene Set	1.199e-11	3237	6.405e-09	25	macromolecular complex	amigo.geneontol...
GO GO:0005488	View Gene Set	1.418e-11	12334	7.288e-09	26	binding	amigo.geneontol...
GO GO:0016070	View Gene Set	2.541e-11	2596	1.257e-08	27	RNA metabolic process	amigo.geneontol...
GO GO:0009987	View Gene Set	3.234e-11	11620	1.543e-08	28	cellular process	amigo.geneontol...
GO GO:0034645	View Gene Set	4.147e-11	3529	1.847e-08	29	cellular macromolecule biosynthetic process	amigo.geneontol...
GO GO:0003676	View Gene Set	4.124e-11	2979	1.847e-08	29	nucleic acid binding	amigo.geneontol...
GO GO:0005515	View Gene Set	4.753e-11	8146	2.049e-08	31	protein binding	amigo.geneontol...
GO GO:0044427	View Gene Set	7.847e-11	420	3.276e-08	32	chromosomal part	amigo.geneontol...
GO GO:0005654	View Gene Set	1.262e-10	939	5.108e-08	33	nucleoplasm	amigo.geneontol...
GO GO:0006807	View Gene Set	1.642e-10	4698	6.451e-08	34	nitrogen compound metabolic process	amigo.geneontol...
GO GO:0006139	View Gene Set	1.979e-10	4294	7.556e-08	35	nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0009059	View Gene Set	2.73e-10	3597	1.013e-07	36	macromolecule biosynthetic process	amigo.geneontol...
GO GO:0006259	View Gene Set	3.25e-10	592	1.174e-07	37	DNA metabolic process	amigo.geneontol...
GO GO:0016043	View Gene Set	8.257e-10	2937	2.903e-07	38	cellular component organization	amigo.geneontol...
GO GO:0006333	View Gene Set	8.58e-10	129	2.939e-07	39	chromatin assembly or disassembly	amigo.geneontol...
GO GO:0044238	View Gene Set	1.914e-09	7629	6.393e-07	40	primary metabolic process	amigo.geneontol...
GO GO:0044237	View Gene Set	1.964e-09	7431	6.4e-07	41	cellular metabolic process	amigo.geneontol...
GO GO:0044249	View Gene Set	2.657e-09	4326	8.451e-07	42	cellular biosynthetic process	amigo.geneontol...
GO GO:0060255	View Gene Set	2.936e-09	3411	9.124e-07	43	regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0009058	View Gene Set	3.234e-09	4436	9.82e-07	44	biosynthetic process	amigo.geneontol...
GO GO:0044085	View Gene Set	4.909e-09	1167	1.457e-06	45	cellular component biogenesis	amigo.geneontol...
GO GO:0006325	View Gene Set	6.65e-09	425	1.931e-06	46	chromatin organization	amigo.geneontol...
GO GO:0034621	View Gene Set	1.16e-08	458	3.296e-06	47	cellular macromolecular complex subunit organization	amigo.geneontol...
GO GO:0010468	View Gene Set	2.327e-08	2958	6.4e-06	48	regulation of gene expression	amigo.geneontol...
GO GO:0044464	View Gene Set	2.347e-08	15066	6.4e-06	48	cell part	amigo.geneontol...
GO GO:0005623	View Gene Set	2.46e-08	15067	6.574e-06	50	cell	amigo.geneontol...
GO GO:0043234	View Gene Set	3.366e-08	2680	8.819e-06	51	protein complex	amigo.geneontol...
GO GO:0000166	View Gene Set	3.975e-08	2257	1.021e-05	52	nucleotide binding	amigo.geneontol...
GO GO:0006350	View Gene Set	4.116e-08	2744	1.038e-05	53	transcription	amigo.geneontol...
GO GO:0006260	View Gene Set	4.839e-08	239	1.197e-05	54	DNA replication	amigo.geneontol...
GO GO:0043933	View Gene Set	6.102e-08	836	1.482e-05	55	macromolecular complex subunit organization	amigo.geneontol...
GO GO:0051252	View Gene Set	7.839e-08	1869	1.87e-05	56	regulation of RNA metabolic process	amigo.geneontol...
GO GO:0048285	View Gene Set	8.615e-08	286	2.019e-05	57	organelle fission	amigo.geneontol...
GO GO:0003677	View Gene Set	9.254e-08	2028	2.132e-05	58	DNA binding	amigo.geneontol...
GO GO:0032774	View Gene Set	1.349e-07	1953	3.054e-05	59	RNA biosynthetic process	amigo.geneontol...
GO GO:0006351	View Gene Set	1.909e-07	1949	4.245e-05	60	transcription DNA-dependent	amigo.geneontol...
GO GO:0008150	View Gene Set	1.938e-07	14318	4.245e-05	60	biological_process	amigo.geneontol...
GO GO:0080090	View Gene Set	2.382e-07	3585	5.134e-05	62	regulation of primary metabolic process	amigo.geneontol...
GO GO:0010556	View Gene Set	2.856e-07	2901	6.056e-05	63	regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0006281	View Gene Set	3.021e-07	309	6.209e-05	64	DNA repair	amigo.geneontol...
GO GO:0034728	View Gene Set	3.017e-07	93	6.209e-05	64	nucleosome organization	amigo.geneontol...
GO GO:0006323	View Gene Set	3.204e-07	119	6.486e-05	66	DNA packaging	amigo.geneontol...
GO GO:0000280	View Gene Set	3.306e-07	276	6.496e-05	67	nuclear division	amigo.geneontol...
GO GO:0007067	View Gene Set	3.306e-07	276	6.496e-05	67	mitosis	amigo.geneontol...
GO GO:0008152	View Gene Set	3.408e-07	8439	6.6e-05	69	metabolic process	amigo.geneontol...
GO GO:0065003	View Gene Set	4.074e-07	763	7.776e-05	70	macromolecular complex assembly	amigo.geneontol...
GO GO:0045449	View Gene Set	4.795e-07	2647	9.023e-05	71	regulation of transcription	amigo.geneontol...
GO GO:0000087	View Gene Set	5.56e-07	286	0.0001032	72	M phase of mitotic cell cycle	amigo.geneontol...
GO GO:0022607	View Gene Set	7.438e-07	1043	0.0001361	73	cellular component assembly	amigo.geneontol...
GO GO:0034622	View Gene Set	8.96e-07	393	0.0001618	74	cellular macromolecular complex assembly	amigo.geneontol...
GO GO:0033554	View Gene Set	1.158e-06	698	0.0002062	75	cellular response to stress	amigo.geneontol...
GO GO:0032559	View Gene Set	1.279e-06	1503	0.0002248	76	adenyl ribonucleotide binding	amigo.geneontol...
GO GO:0009889	View Gene Set	1.308e-06	3070	0.0002269	77	regulation of biosynthetic process	amigo.geneontol...
GO GO:0006974	View Gene Set	1.35e-06	412	0.0002293	78	response to DNA damage stimulus	amigo.geneontol...
GO GO:0019219	View Gene Set	1.356e-06	3040	0.0002293	78	regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0031323	View Gene Set	1.389e-06	3768	0.0002319	80	regulation of cellular metabolic process	amigo.geneontol...
GO GO:0031326	View Gene Set	1.416e-06	3048	0.0002336	81	regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0030554	View Gene Set	1.458e-06	1584	0.0002375	82	adenyl nucleotide binding	amigo.geneontol...
GO GO:0032553	View Gene Set	1.565e-06	1851	0.0002488	83	ribonucleotide binding	amigo.geneontol...
GO GO:0032555	View Gene Set	1.565e-06	1851	0.0002488	83	purine ribonucleotide binding	amigo.geneontol...
GO GO:0017076	View Gene Set	1.657e-06	1934	0.0002604	85	purine nucleotide binding	amigo.geneontol...
GO GO:0005829	View Gene Set	1.959e-06	1323	0.0003043	86	cytosol	amigo.geneontol...
GO GO:0071103	View Gene Set	2.404e-06	140	0.0003692	87	DNA conformation change	amigo.geneontol...
GO GO:0051171	View Gene Set	2.627e-06	3066	0.0003989	88	regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0031497	View Gene Set	2.709e-06	87	0.0004067	89	chromatin assembly	amigo.geneontol...
GO GO:0006355	View Gene Set	2.743e-06	1820	0.0004072	90	regulation of transcription DNA-dependent	amigo.geneontol...
GO GO:0000775	View Gene Set	3.359e-06	146	0.0004932	91	chromosome centromeric region	amigo.geneontol...
GO GO:0005524	View Gene Set	3.435e-06	1480	0.0004988	92	ATP binding	amigo.geneontol...
GO GO:0022403	View Gene Set	3.867e-06	522	0.0005556	93	cell cycle phase	amigo.geneontol...
GO GO:0019222	View Gene Set	4.344e-06	4060	0.0006175	94	regulation of metabolic process	amigo.geneontol...
GO GO:0016568	View Gene Set	4.603e-06	324	0.0006394	95	chromatin modification	amigo.geneontol...
GO GO:0046907	View Gene Set	4.587e-06	753	0.0006394	95	intracellular transport	amigo.geneontol...
GO GO:0030528	View Gene Set	4.643e-06	950	0.0006394	95	transcription regulator activity	amigo.geneontol...
GO GO:0001883	View Gene Set	5.888e-06	1620	0.0008027	98	purine nucleoside binding	amigo.geneontol...
GO GO:0051301	View Gene Set	6.516e-06	358	0.0008793	99	cell division	amigo.geneontol...
GO GO:0006334	View Gene Set	6.77e-06	83	0.0009045	100	nucleosome assembly	amigo.geneontol...
GO GO:0005730	View Gene Set	6.992e-06	734	0.0009158	101	nucleolus	amigo.geneontol...
GO GO:0016740	View Gene Set	6.932e-06	1691	0.0009158	101	transferase activity	amigo.geneontol...
GO GO:0000279	View Gene Set	7.206e-06	406	0.0009347	103	M phase	amigo.geneontol...
GO GO:0001882	View Gene Set	8.049e-06	1630	0.001034	104	nucleoside binding	amigo.geneontol...
GO GO:0006366	View Gene Set	8.469e-06	919	0.001078	105	transcription from RNA polymerase II promoter	amigo.geneontol...
GO GO:0065004	View Gene Set	1.294e-05	99	0.00163	106	protein-DNA complex assembly	amigo.geneontol...
GO GO:0006357	View Gene Set	1.475e-05	760	0.001842	107	regulation of transcription from RNA polymerase II promoter	amigo.geneontol...
GO GO:0005737	View Gene Set	1.512e-05	7676	0.001871	108	cytoplasm	amigo.geneontol...
GO GO:0016772	View Gene Set	1.649e-05	895	0.002021	109	transferase activity transferring phosphorus-containing groups	amigo.geneontol...
GO GO:0000786	View Gene Set	1.72e-05	65	0.002089	110	nucleosome	amigo.geneontol...
GO GO:0005575	View Gene Set	1.787e-05	16391	0.002151	111	cellular_component	amigo.geneontol...
GO GO:0003674	View Gene Set	1.934e-05	15462	0.002307	112	molecular_function	amigo.geneontol...
GO GO:0022613	View Gene Set	2.009e-05	194	0.002375	113	ribonucleoprotein complex biogenesis	amigo.geneontol...
GO GO:0006396	View Gene Set	2.703e-05	578	0.003167	114	RNA processing	amigo.geneontol...
GO GO:0000785	View Gene Set	3.017e-05	213	0.003505	115	chromatin	amigo.geneontol...
GO GO:0000278	View Gene Set	3.225e-05	489	0.003714	116	mitotic cell cycle	amigo.geneontol...
GO GO:0005739	View Gene Set	3.364e-05	1274	0.003841	117	mitochondrion	amigo.geneontol...
GO GO:0008380	View Gene Set	3.597e-05	300	0.004073	118	RNA splicing	amigo.geneontol...
GO GO:0000793	View Gene Set	3.743e-05	136	0.004203	119	condensed chromosome	amigo.geneontol...
GO GO:0016071	View Gene Set	4.341e-05	381	0.004833	120	mRNA metabolic process	amigo.geneontol...
GO GO:0007049	View Gene Set	4.55e-05	1006	0.005024	121	cell cycle	amigo.geneontol...
GO GO:0050794	View Gene Set	4.688e-05	6236	0.005134	122	regulation of cellular process	amigo.geneontol...
GO GO:0044267	View Gene Set	5.193e-05	2465	0.005641	123	cellular protein metabolic process	amigo.geneontol...
GO GO:0000776	View Gene Set	5.451e-05	92	0.005873	124	kinetochore	amigo.geneontol...
GO GO:0006464	View Gene Set	5.545e-05	1768	0.005926	125	protein modification process	amigo.geneontol...
GO GO:0003824	View Gene Set	5.795e-05	5198	0.006145	126	catalytic activity	amigo.geneontol...
GO GO:0044451	View Gene Set	5.987e-05	600	0.006298	127	nucleoplasm part	amigo.geneontol...
GO GO:0006376	View Gene Set	6.406e-05	15	0.006687	128	mRNA splice site selection	amigo.geneontol...
GO GO:0032993	View Gene Set	6.516e-05	99	0.006748	129	protein-DNA complex	amigo.geneontol...
GO GO:0000377	View Gene Set	6.682e-05	97	0.006815	130	RNA splicing via transesterification reactions with bulged adenosine as nucleophile	amigo.geneontol...
GO GO:0000398	View Gene Set	6.682e-05	97	0.006815	130	nuclear mRNA splicing via spliceosome	amigo.geneontol...
GO GO:0030529	View Gene Set	7.493e-05	504	0.007584	132	ribonucleoprotein complex	amigo.geneontol...
GO GO:0050789	View Gene Set	8.445e-05	6579	0.008483	133	regulation of biological process	amigo.geneontol...
GO GO:0016301	View Gene Set	9.121e-05	769	0.009094	134	kinase activity	amigo.geneontol...
GO GO:0043412	View Gene Set	0.0001011	1848	0.01	135	macromolecule modification	amigo.geneontol...
GO GO:0044444	View Gene Set	0.0001028	5184	0.0101	136	cytoplasmic part	amigo.geneontol...
GO GO:0043687	View Gene Set	0.0001129	1509	0.01101	137	post-translational protein modification	amigo.geneontol...
GO GO:0008094	View Gene Set	0.000116	61	0.01115	138	DNA-dependent ATPase activity	amigo.geneontol...
GO GO:0019904	View Gene Set	0.0001159	393	0.01115	138	protein domain specific binding	amigo.geneontol...
GO GO:0000375	View Gene Set	0.0001189	106	0.01134	140	RNA splicing via transesterification reactions	amigo.geneontol...
GO GO:0006378	View Gene Set	0.0001337	10	0.01267	141	mRNA polyadenylation	amigo.geneontol...
GO GO:0045815	View Gene Set	0.0001432	10	0.01348	142	positive regulation of gene expression epigenetic	amigo.geneontol...
GO GO:0006397	View Gene Set	0.0001466	317	0.0137	143	mRNA processing	amigo.geneontol...
GO GO:0015630	View Gene Set	0.0001521	587	0.01411	144	microtubule cytoskeleton	amigo.geneontol...
GO GO:0016773	View Gene Set	0.0001671	708	0.0154	145	phosphotransferase activity alcohol group as acceptor	amigo.geneontol...
GO GO:0042254	View Gene Set	0.0001892	130	0.01731	146	ribosome biogenesis	amigo.geneontol...
GO GO:0006461	View Gene Set	0.0002031	595	0.01834	147	protein complex assembly	amigo.geneontol...
GO GO:0070271	View Gene Set	0.0002031	595	0.01834	147	protein complex biogenesis	amigo.geneontol...
GO GO:0008536	View Gene Set	0.0002076	11	0.01861	149	Ran GTPase binding	amigo.geneontol...
GO GO:0015031	View Gene Set	0.0002259	888	0.02012	150	protein transport	amigo.geneontol...
GO GO:0003682	View Gene Set	0.0002305	178	0.02039	151	chromatin binding	amigo.geneontol...
GO GO:0006605	View Gene Set	0.0002373	273	0.02085	152	protein targeting	amigo.geneontol...
GO GO:0030496	View Gene Set	0.0002552	28	0.02229	153	midbody	amigo.geneontol...
GO GO:0000075	View Gene Set	0.0002572	109	0.02231	154	cell cycle checkpoint	amigo.geneontol...
GO GO:0000777	View Gene Set	0.0002631	74	0.02268	155	condensed chromosome kinetochore	amigo.geneontol...
GO GO:0019538	View Gene Set	0.0002808	2935	0.02405	156	protein metabolic process	amigo.geneontol...
GO GO:0005759	View Gene Set	0.0002967	223	0.02501	157	mitochondrial matrix	amigo.geneontol...
GO GO:0031980	View Gene Set	0.0002967	223	0.02501	157	mitochondrial lumen	amigo.geneontol...
GO GO:0003723	View Gene Set	0.0002976	732	0.02501	157	RNA binding	amigo.geneontol...
GO GO:0004672	View Gene Set	0.000304	594	0.02538	160	protein kinase activity	amigo.geneontol...
GO GO:0031344	View Gene Set	0.0003117	131	0.02581	161	regulation of cell projection organization	amigo.geneontol...
GO GO:0042393	View Gene Set	0.000313	60	0.02581	161	histone binding	amigo.geneontol...
GO GO:0006302	View Gene Set	0.0003207	65	0.0262	163	double-strand break repair	amigo.geneontol...
GO GO:0016569	View Gene Set	0.0003216	165	0.0262	163	covalent chromatin modification	amigo.geneontol...
GO GO:0016417	View Gene Set	0.0003637	6	0.02945	165	S-acyltransferase activity	amigo.geneontol...
GO GO:0004674	View Gene Set	0.000379	425	0.0305	166	protein serine/threonine kinase activity	amigo.geneontol...
GO GO:0051019	View Gene Set	0.0003904	7	0.03123	167	mitogen-activated protein kinase binding	amigo.geneontol...
GO GO:0007059	View Gene Set	0.0003945	94	0.03137	168	chromosome segregation	amigo.geneontol...
GO GO:0006270	View Gene Set	0.0004036	26	0.03191	169	DNA-dependent DNA replication initiation	amigo.geneontol...
GO GO:0006886	View Gene Set	0.0004289	439	0.03371	170	intracellular protein transport	amigo.geneontol...
GO GO:0070507	View Gene Set	0.0004359	43	0.03406	171	regulation of microtubule cytoskeleton organization	amigo.geneontol...
GO GO:0022402	View Gene Set	0.0004553	676	0.03536	172	cell cycle process	amigo.geneontol...
GO GO:0016570	View Gene Set	0.0004872	162	0.03762	173	histone modification	amigo.geneontol...
GO GO:0000226	View Gene Set	0.0004907	178	0.03768	174	microtubule cytoskeleton organization	amigo.geneontol...
GO GO:0031965	View Gene Set	0.0005148	127	0.0393	175	nuclear membrane	amigo.geneontol...
GO GO:0006364	View Gene Set	0.0005196	97	0.03945	176	rRNA processing	amigo.geneontol...
GO GO:0008318	View Gene Set	0.0005444	8	0.04109	177	protein prenyltransferase activity	amigo.geneontol...
GO GO:0006342	View Gene Set	0.0005634	27	0.04205	178	chromatin silencing	amigo.geneontol...
GO GO:0016072	View Gene Set	0.0005633	101	0.04205	178	rRNA metabolic process	amigo.geneontol...
GO GO:0000779	View Gene Set	0.0005668	79	0.04207	180	condensed chromosome centromeric region	amigo.geneontol...
GO GO:0071564	View Gene Set	0.0006412	11	0.0471	181	npBAF complex	amigo.geneontol...
GO GO:0050699	View Gene Set	0.0006416	19	0.0471	181	WW domain binding	amigo.geneontol...
GO GO:0045184	View Gene Set	0.0006463	904	0.04718	183	establishment of protein localization	amigo.geneontol...
GO GO:0005635	View Gene Set	0.0006809	234	0.04944	184	nuclear envelope	amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad chr19p13	View Gene Set	6.042e-07	514	0.000197	1	Genes in cytogenetic band chr19p13	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP	View Gene Set	2.449e-37	577	5.859e-34	1	Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1).	www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	View Gene Set	2.531e-34	1180	3.027e-31	2	Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314].	www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP	View Gene Set	1.393e-21	1353	1.11e-18	3	Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors.	www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK	View Gene Set	4.758e-20	1582	2.845e-17	4	Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues.	www.broad.mit.e...
Broad BIDUS_METASTASIS_UP	View Gene Set	2.498e-19	203	9.96e-17	5	Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2	View Gene Set	2.19e-19	265	9.96e-17	5	Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK	View Gene Set	9.208e-18	744	3.147e-15	7	Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200].	www.broad.mit.e...
Broad MANALO_HYPOXIA_DN	View Gene Set	1.318e-17	276	3.94e-15	8	Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091].	www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6	View Gene Set	1.948e-16	435	5.176e-14	9	Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP	View Gene Set	4.588e-16	589	1.097e-13	10	Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE	View Gene Set	4.635e-15	331	1.008e-12	11	The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module.	www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN	View Gene Set	8.029e-15	243	1.601e-12	12	Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h.	www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX	View Gene Set	1.616e-14	757	2.974e-12	13	Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613].	www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN	View Gene Set	3.68e-14	241	6.287e-12	14	Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties.	www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP	View Gene Set	6.725e-14	290	1.072e-11	15	Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma.	www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP	View Gene Set	8.933e-14	711	1.336e-11	16	Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples.	www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN	View Gene Set	2.604e-13	297	3.664e-11	17	Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown.	www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	View Gene Set	2.413e-12	436	3.206e-10	18	Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs.	www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP	View Gene Set	3.572e-12	143	4.497e-10	19	Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3.	www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN	View Gene Set	3.862e-12	920	4.619e-10	20	Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h.	www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS	View Gene Set	4.471e-12	92	5.093e-10	21	Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues.	www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN	View Gene Set	1.591e-11	139	1.73e-09	22	Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi.	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP	View Gene Set	2.812e-11	314	2.924e-09	23	Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN	View Gene Set	6.271e-11	859	6.251e-09	24	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi.	www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK	View Gene Set	6.587e-11	410	6.302e-09	25	Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues.	www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES	View Gene Set	9.25e-11	630	8.51e-09	26	Genes showing cell-cycle stage-specific expression [PMID=12058064].	www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER	View Gene Set	1.125e-10	138	9.966e-09	27	The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome.	www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK	View Gene Set	1.572e-10	164	1.343e-08	28	Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues.	www.broad.mit.e...
Broad PRAMOONJAGO_SOX4_TARGETS_DN	View Gene Set	5.996e-10	51	4.946e-08	29	Genes down-regulated in ACC3 cells (adenoid cystic carcinoma) after knockdown of SOX4 [Gene ID=6659] by RNAi.	www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN	View Gene Set	6.275e-10	1253	5.003e-08	30	Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue.	www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN	View Gene Set	7.429e-10	289	5.732e-08	31	Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi.	www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN	View Gene Set	8.766e-10	80	6.553e-08	32	Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP	View Gene Set	1.253e-09	279	9.08e-08	33	Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi.	www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN	View Gene Set	1.431e-09	124	1.006e-07	34	Upregulated by induction of exogenous BRCA1 in EcR-293 cells	www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP	View Gene Set	3.779e-09	388	2.583e-07	35	Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195].	www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	View Gene Set	4.762e-09	639	3.164e-07	36	Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts.	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	View Gene Set	4.965e-09	308	3.21e-07	37	Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only.	www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK	View Gene Set	5.299e-09	92	3.336e-07	38	Genes constituting the BRCA-centered network (BCN).	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	View Gene Set	6.313e-09	184	3.872e-07	39	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering.	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN	View Gene Set	6.614e-09	155	3.955e-07	40	Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples.	www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN	View Gene Set	1.156e-08	832	6.584e-07	41	Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h.	www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP	View Gene Set	1.138e-08	370	6.584e-07	41	Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells.	www.broad.mit.e...
Broad BENPORATH_ES_1	View Gene Set	1.888e-08	367	1.05e-06	43	Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies.	www.broad.mit.e...
Broad CHEN_HOXA5_TARGETS_9HR_DN	View Gene Set	2.58e-08	39	1.403e-06	44	Differentially expressed genes 9 hr after tinduction of HoxA5 [Gene ID=3205] expression in a breast cancer cell line.	www.broad.mit.e...
Broad DANG_BOUND_BY_MYC	View Gene Set	3.289e-08	1045	1.748e-06	45	Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database.	www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP	View Gene Set	3.681e-08	408	1.914e-06	46	Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples.	www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN	View Gene Set	3.957e-08	332	2.014e-06	47	Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265].	www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN	View Gene Set	5.32e-08	62	2.651e-06	48	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP	View Gene Set	6.471e-08	485	3.159e-06	49	Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector.	www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP	View Gene Set	7.588e-08	53	3.63e-06	50	Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive.	www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN	View Gene Set	8.062e-08	96	3.781e-06	51	Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444].	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES	View Gene Set	8.455e-08	128	3.889e-06	52	Genes involved in DNA replication compiled manually by the authors.	www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN	View Gene Set	8.644e-08	758	3.901e-06	53	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi.	www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC	View Gene Set	9.25e-08	101	4.097e-06	54	Cluster 2: genes up-regulated in B493-6 cells (B lymphocytes) by serum alone or in combination with MYC [Gene ID=4609] but not by MYC alone.	www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP	View Gene Set	1.071e-07	129	4.656e-06	55	Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi.	www.broad.mit.e...
Broad GARY_CD5_TARGETS_UP	View Gene Set	1.201e-07	463	5.129e-06	56	Genes up-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector.	www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP	View Gene Set	1.337e-07	180	5.552e-06	57	Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients.	www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP	View Gene Set	1.346e-07	68	5.552e-06	57	Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609].	www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN	View Gene Set	1.409e-07	201	5.713e-06	59	Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1.	www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN	View Gene Set	1.761e-07	351	7.022e-06	60	Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids.	www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP	View Gene Set	1.866e-07	144	7.317e-06	61	Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones.	www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_480_HELA	View Gene Set	2.507e-07	159	9.671e-06	62	Genes whose expression peaked at 480 min after stimulation of HeLa cells with EGF [Gene ID=1950].	www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP	View Gene Set	2.749e-07	152	1.044e-05	63	Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years.	www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN	View Gene Set	7.436e-07	136	2.779e-05	64	Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions.	www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN	View Gene Set	1.08e-06	158	3.976e-05	65	Genes down-regulated in Wilm's tumor samples compared to fetal kidney.	www.broad.mit.e...
Broad BENPORATH_PROLIFERATION	View Gene Set	1.148e-06	140	4.098e-05	66	Set 'Proliferation Cluster': genes defined in human breast tumor expression data.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14	View Gene Set	1.135e-06	131	4.098e-05	66	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14.	www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN	View Gene Set	1.318e-06	42	4.635e-05	68	Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037].	www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN	View Gene Set	1.514e-06	86	5.25e-05	69	Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM	View Gene Set	1.618e-06	154	5.527e-05	70	Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum.	www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP	View Gene Set	2.228e-06	178	7.507e-05	71	Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi.	www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN	View Gene Set	2.74e-06	138	9.102e-05	72	Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371].	www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP	View Gene Set	3.069e-06	127	0.0001006	73	Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database.	www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN	View Gene Set	3.591e-06	599	0.0001161	74	Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress.	www.broad.mit.e...
Broad MUELLER_PLURINET	View Gene Set	4.354e-06	294	0.0001389	75	Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells).	www.broad.mit.e...
Broad JIANG_TIP30_TARGETS_DN	View Gene Set	4.971e-06	23	0.0001565	76	Down-regulated genes in HepG2 cells (liver cancer) overexpressing an oncogenic variant of tumor suppressor TIP30 [Gene ID=10553] compared to its wild type form.	www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_UP	View Gene Set	5.166e-06	78	0.0001605	77	Genes up-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion.	www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_UP	View Gene Set	5.995e-06	132	0.0001812	78	The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064].	www.broad.mit.e...
Broad PENG_GLUTAMINE_DEPRIVATION_DN	View Gene Set	6.061e-06	84	0.0001812	78	Genes down-regulated in BJAB cells (B-lymphoma) after glutamine [PubChem=738] deprivation.	www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP	View Gene Set	5.921e-06	93	0.0001812	78	Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES	View Gene Set	6.473e-06	205	0.0001911	81	Genes involved in DNA repair compiled manually by the authors.	www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK	View Gene Set	6.978e-06	1375	0.0002036	82	Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues.	www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN	View Gene Set	7.844e-06	131	0.0002261	83	Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi.	www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN	View Gene Set	8.205e-06	43	0.0002282	84	Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757].	www.broad.mit.e...
Broad MILI_PSEUDOPODIA_CHEMOTAXIS_DN	View Gene Set	8.052e-06	430	0.0002282	84	Transcripts depleted in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988].	www.broad.mit.e...
Broad DANG_REGULATED_BY_MYC_UP	View Gene Set	8.199e-06	65	0.0002282	84	Genes up-regulated by MYC [Gene ID=4609] according to the MYC Target Gene Database.	www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN	View Gene Set	1.074e-05	303	0.000292	87	Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes.	www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE	View Gene Set	1.074e-05	54	0.000292	87	Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA	View Gene Set	1.19e-05	433	0.0003199	89	Mitochondrial genes	www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS	View Gene Set	1.254e-05	19	0.0003332	90	RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1.	www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP	View Gene Set	1.326e-05	135	0.0003485	91	Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360].	www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_UP	View Gene Set	1.705e-05	88	0.0004432	92	Genes up-regulated in prostate cancer samples.	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP	View Gene Set	1.723e-05	135	0.0004433	93	Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability.	www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP	View Gene Set	2.152e-05	52	0.0005477	94	Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP	View Gene Set	2.32e-05	53	0.0005842	95	The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele.	www.broad.mit.e...
Broad SCHLOSSER_MYC_AND_SERUM_RESPONSE_SYNERGY	View Gene Set	3.067e-05	31	0.0007643	96	Cluster 3: genes strongly up-regulated in B493-6 cells (B lymphocytes) by a combination of MYC [Gene ID=4609] and serum but not by each of them alone.	www.broad.mit.e...
Broad SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP	View Gene Set	3.429e-05	45	0.0008455	97	Top 50 up-regulated markers distinguishing diffuse large B-cell lymphoma (DLBCL) from follicular lymphoma (FL) samples.	www.broad.mit.e...
Broad REN_BOUND_BY_E2F	View Gene Set	4.006e-05	47	0.0009779	98	Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay.	www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN	View Gene Set	5.083e-05	52	0.001228	99	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage.	www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP	View Gene Set	5.156e-05	427	0.001233	100	Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi.	www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL	View Gene Set	5.738e-05	109	0.001359	101	Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples.	www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_6_7WK_UP	View Gene Set	7.244e-05	175	0.001683	102	Genes up-regulated during pubertal mammary gland development between week 6 and 7.	www.broad.mit.e...
Broad JIANG_VHL_TARGETS	View Gene Set	7.247e-05	87	0.001683	102	Genes up-regulated in 786-0 cells (renal carcinoma RCC) upon expression of VHL [Gene ID=7428] off a retroviral vector under normoxia (normal oxygen) condition.	www.broad.mit.e...
Broad PENG_RAPAMYCIN_RESPONSE_DN	View Gene Set	7.931e-05	69	0.001824	104	Genes down-regulated in BJUB cells (B-lymphoma) in response to rapamycin [PubChem=6610346] treatment.	www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER	View Gene Set	8.934e-05	167	0.002035	105	Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines.	www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS	View Gene Set	9.202e-05	768	0.002076	106	Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set.	www.broad.mit.e...
Broad BONOME_OVARIAN_CANCER_POOR_SURVIVAL_DN	View Gene Set	9.581e-05	19	0.002142	107	Top highly correlated genes negatively associated with poor survival of patients with suboptimally debulked ovarian tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP	View Gene Set	0.000101	36	0.002216	108	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_DN	View Gene Set	0.000101	36	0.002216	108	Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_DN	View Gene Set	0.000107	607	0.002328	110	Transcripts depleted from pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335].	www.broad.mit.e...
Broad CHANG_CYCLING_GENES	View Gene Set	0.0001096	49	0.002361	111	Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature.	www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES	View Gene Set	0.0001166	384	0.002489	112	Housekeeping genes identified as expressed across 19 normal tissues.	www.broad.mit.e...
Broad MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN	View Gene Set	0.0001177	255	0.002491	113	Genes down-regulated in non-apoptotic tissues (fetal liver) after MDM4 [Gene ID=4194] knockout.	www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER	View Gene Set	0.0001201	60	0.00252	114	Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS	View Gene Set	0.0001229	855	0.002555	115	Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP	View Gene Set	0.0001292	52	0.002664	116	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G23 defined by unsupervised clustering.	www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002	View Gene Set	0.0001304	420	0.002666	117	Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets.	www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN	View Gene Set	0.0001672	571	0.003388	118	Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.	www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP	View Gene Set	0.0001733	359	0.003483	119	The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	View Gene Set	0.0001868	44	0.003724	120	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G123 defined by unsupervised clustering.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION	View Gene Set	0.0001932	71	0.003819	121	Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP	View Gene Set	0.000199	80	0.003903	122	Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages.	www.broad.mit.e...
Broad MUELLER_COMMON_TARGETS_OF_AML_FUSIONS_UP	View Gene Set	0.0002036	14	0.00396	123	Up-regulated target genes shared by acute myeloid leukemia (AML) translocation products PML RARA [Gene ID=5371 5914] AML1 ETO [Gene ID=861 862] and PLZF RARA [Gene ID=5914 7704].	www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2	View Gene Set	0.0002213	33	0.004268	124	Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples.	www.broad.mit.e...
Broad WOOD_EBV_EBNA1_TARGETS_UP	View Gene Set	0.0002299	104	0.004398	125	Genes up-regulated in the Ad/AH cells (adenocarcinoma) engineered to stably express the Epstein-Barr virus (EBV) gene EBNA1.	www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN	View Gene Set	0.0002424	224	0.004601	126	Genes down-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis).	www.broad.mit.e...
Broad ACEVEDO_METHYLATED_IN_LIVER_CANCER_UP	View Gene Set	0.0002456	2268	0.004625	127	Genes whose DNA is hypo-methylated in hepatocellular carcinoma (HCC) compared to normal liver.	www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN	View Gene Set	0.0002577	148	0.004816	128	Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi.	www.broad.mit.e...
Broad FAELT_B_CLL_WITH_VH3_21_UP	View Gene Set	0.0002988	44	0.00554	129	Genes changed in samples from B-CLL (B-cell chronic lymphocytic leukemia) using the immunoglobulin heavy chain VH3-21 gene.	www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN	View Gene Set	0.0003326	22	0.00612	130	Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161].	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_12	View Gene Set	0.0003663	72	0.006689	131	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 12.	www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_B_LYMPHOCYTE_UP	View Gene Set	0.0003876	76	0.006984	132	Genes up-regulated in plasma cells compared with B lymphocytes.	www.broad.mit.e...
Broad GUTIERREZ_MULTIPLE_MYELOMA_DN	View Gene Set	0.0003883	34	0.006984	132	Genes exclusively down-regulated in plasma cells from MM (multiple myeloma) patients but with a similiar expression pattern in the normal cells and in the cells from WM (Waldenstroem's macroblobulinemia) patients.	www.broad.mit.e...
Broad CHANG_CORE_SERUM_RESPONSE_UP	View Gene Set	0.0004044	66	0.007218	134	Up-regulated genes in the canonical gene expression signature of the fibroblast core serum response (CSR) defined by the Stanford group.	www.broad.mit.e...
Broad SUNG_METASTASIS_STROMA_DN	View Gene Set	0.0004256	53	0.007542	135	Genes down-regulated in metastatic vs non-metastatic stromal cells originated from either bone or prostate tissues.	www.broad.mit.e...
Broad WALLACE_PROSTATE_CANCER_UP	View Gene Set	0.0004421	18	0.007776	136	Genes up-regulated in prostate tumor vs normal tissue samples.	www.broad.mit.e...
Broad CREIGHTON_AKT1_SIGNALING_VIA_MTOR_DN	View Gene Set	0.0004573	23	0.007927	137	Genes in the AKT1 [Gene ID=207] pathway which depend on MTOR [Gene ID=2475] sensitive to RAD001 (everolimus) [PubChem=6442177].	www.broad.mit.e...
Broad BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS	View Gene Set	0.0004546	805	0.007927	137	Transcripts in hematopoietic stem cells (HSC) which are trans-regulated (i.e. modulated by a QTL (quantitative trait locus) not in a close proximity to the gene).	www.broad.mit.e...
Broad AIYAR_COBRA1_TARGETS_DN	View Gene Set	0.000473	28	0.008139	139	Genes down-regulated in T47D cells (breast cancer) after COBRA1 [Gene ID=25920] knockdown by RNAi.	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN	View Gene Set	0.0004805	60	0.008209	140	Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701].	www.broad.mit.e...
Broad STARK_HYPPOCAMPUS_22Q11_DELETION_UP	View Gene Set	0.0004944	43	0.008387	141	Genes up-regulated in hyppocampus of mice carrying a hemizygotic microdeletion in the 22q11.2 region.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	View Gene Set	0.0005846	681	0.009848	142	Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN	View Gene Set	0.0006169	66	0.01032	143	Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector.	www.broad.mit.e...
Broad GAJATE_RESPONSE_TO_TRABECTEDIN_DN	View Gene Set	0.0006231	16	0.01035	144	Genes down-regulated in HeLa cells (cervical carcinoma) by trabectedin [PubChem=3199].	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN	View Gene Set	0.0006303	51	0.0104	145	Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC).	www.broad.mit.e...
Broad LIN_APC_TARGETS	View Gene Set	0.0006868	52	0.01125	146	Genes up-regulated by forced expression of APC [Gene ID=324] in the APC-deficient SW480 cell line (colon cancer).	www.broad.mit.e...
Broad MAYBURD_RESPONSE_TO_L663536_DN	View Gene Set	0.0007077	53	0.01152	147	Genes down-regulated in H720 cells (lung cancer) after treatment with L663536 (MK886) [PubChem=105049] an inhibitor of leukotriene biosynthesis.	www.broad.mit.e...
Broad JIANG_HYPOXIA_VIA_VHL	View Gene Set	0.0007811	21	0.01262	148	Genes up-regulated in 786-0 cells (renal carcinoma RCC) by the loss of VHL [Gene ID=7428] and in response to hypoxia.	www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_5_6WK_DN	View Gene Set	0.000804	123	0.01282	149	Genes down-regulated during pubertal mammary gland development between week 5 and 6.	www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2	View Gene Set	0.0007999	111	0.01282	149	'Cancer prone response profile' (CPRP): genes common to estradiol and bisphenol A [PubChem=5757 6623] response of epithelial cell cultures from patients at high risk of breast cancer.	www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_8HR_3_DN	View Gene Set	0.0008243	9	0.01306	151	Genes down-regulated in EVSA-T cells (breast cancer) treated with 3 micromolar THC (delta-9-tetrahydrocannabinol) [PubChem=6610319] for 8 h.	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN	View Gene Set	0.0008487	368	0.01327	152	Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN	View Gene Set	0.0008458	49	0.01327	152	Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector.	www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_240_HELA	View Gene Set	0.0008633	59	0.01341	154	Genes whose expression peaked at 240 min after stimulation of HeLa cells with EGF [Gene ID=1950].	www.broad.mit.e...
Broad WEIGEL_OXIDATIVE_STRESS_RESPONSE	View Gene Set	0.0008931	29	0.01378	155	Oxidative stress genes down-regulated in ARPE-19 cells (retinal pigmented epithelium) in response to HNE tBH and H2O2 [PubChem=5283344 6410 784].	www.broad.mit.e...
Broad RAMASWAMY_METASTASIS_UP	View Gene Set	0.000934	63	0.01432	156	Up-regulated genes in metastatic vs primary solid tumors.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17	View Gene Set	0.0009549	165	0.01455	157	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP	View Gene Set	0.0009809	45	0.01485	158	Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone.	www.broad.mit.e...
Broad BONOME_OVARIAN_CANCER_SURVIVAL_SUBOPTIMAL_DEBULKING	View Gene Set	0.001054	489	0.01585	159	Genes whose expression in suboptimally debulked ovarian tumors is associated with survival prognosis.	www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX	View Gene Set	0.001139	229	0.01703	160	Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset	www.broad.mit.e...
Broad CREIGHTON_AKT1_SIGNALING_VIA_MTOR_UP	View Gene Set	0.001195	34	0.01753	161	Genes in the AKT1 [Gene ID=207] pathway which are independent of MTOR [Gene ID=2475] insensitive to RAD001 (everolimus) [PubChem=6442177].	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_KINOME_RED	View Gene Set	0.00119	15	0.01753	161	Genes in the red cluster of protein kinases distinguishing between luminal A and basal breast cancer subtypes.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL	View Gene Set	0.00119	15	0.01753	161	Protein kinases distinguishing between basal and luminal A subtypes of breast cancer.	www.broad.mit.e...
Broad MORI_SMALL_PRE_BII_LYMPHOCYTE_DN	View Gene Set	0.00122	60	0.0178	164	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Small Pre-BII stage.	www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_4_5WK_DN	View Gene Set	0.001249	176	0.01807	165	Genes down-regulated during pubertal mammary gland development between week 4 and 5.	www.broad.mit.e...
Broad IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR	View Gene Set	0.001261	100	0.01807	165	Genes in the expression cluster 'Early Progenitors Shared': up-regulated in hematopoietic progenitors from adult bone marrow and from fetal liver.	www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN	View Gene Set	0.001255	15	0.01807	165	Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors.	www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP	View Gene Set	0.001393	57	0.01983	168	DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not.	www.broad.mit.e...
Broad WALLACE_JAK2_TARGETS_UP	View Gene Set	0.001401	21	0.01983	168	Genes changed more than 7-fold by expressing JAK2 [Gene ID=3717] in the JAK2 null cell line.	www.broad.mit.e...
Broad MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP	View Gene Set	0.001565	92	0.0219	170	Genes correlated with the early tumor onset in the Emu-myc transgenic mouse lymphoma model.	www.broad.mit.e...
Broad GRESHOCK_CANCER_COPY_NUMBER_DN	View Gene Set	0.001559	345	0.0219	170	Genes from common genomic losses observed in a meta analyis of copy number alterations across a panel of different cancer cell lines and tumor samples.	www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP	View Gene Set	0.0016	539	0.02225	172	Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS).	www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN	View Gene Set	0.001756	104	0.02428	173	Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years).	www.broad.mit.e...
Broad KIM_GASTRIC_CANCER_CHEMOSENSITIVITY	View Gene Set	0.001777	97	0.02443	174	Genes up-regulated in gastric cancer patients refractory to chemotherapy treatment with 5-fluorouracil and cisplatin [PubChem=3385 2767] compared to the sensitive state.	www.broad.mit.e...
Broad PENG_LEUCINE_DEPRIVATION_DN	View Gene Set	0.001829	50	0.025	175	Genes down-regulated in BJAB cells (B-lymphoma) after leucine [PubChem=857] deprivation.	www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP	View Gene Set	0.001957	100	0.0266	176	Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959].	www.broad.mit.e...
Broad AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN	View Gene Set	0.002016	218	0.02725	177	Down-regulated genes whose expression correlates with copy number losses in pancreatic adenocarcinoma cell lines and primary tumor specimens.	www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_DN	View Gene Set	0.002344	208	0.0315	178	Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h.	www.broad.mit.e...
Broad YU_MYC_TARGETS_UP	View Gene Set	0.002386	37	0.03189	179	Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609].	www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA	View Gene Set	0.002425	46	0.03223	180	'Cancer prone response profile' (CPRP): genes changed in response to bisphenol A [PubChem=6623] in epithelial cell cultures from patients at high risk of breast cancer.	www.broad.mit.e...
Broad TANG_SENESCENCE_TP53_TARGETS_DN	View Gene Set	0.002493	40	0.03276	181	Genes down-regulated in WI-38 cells (senescent primary fibroblasts) after inactivation of TP53 [Gene ID=7157] by GSE56 polypeptide.	www.broad.mit.e...
Broad KONDO_PROSTATE_CANCER_HCP_WITH_H3K27ME3	View Gene Set	0.00249	94	0.03276	181	Genes with high histone H3 trimethylation mark at K27 (H3K27me3) in PC3 cells (prostate cancer) by ChIP-chip assay on a 12K CpG array (high-CpG-density promoters HCP).	www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE	View Gene Set	0.002581	36	0.03374	183	Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation.	www.broad.mit.e...
Broad GRESHOCK_CANCER_COPY_NUMBER_UP	View Gene Set	0.002631	322	0.03421	184	Genes from common genomic gains observed in a meta analyis of copy number alterations across a panel of different cancer cell lines and tumor samples.	www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S2	View Gene Set	0.002758	114	0.03566	185	Genes from 'subtype S2' signature of hepatocellular carcinoma (HCC): proliferation MYC and AKT1 [Gene ID=4609 207] activation.	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_DN	View Gene Set	0.002836	97	0.03628	186	Genes down-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK).	www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE	View Gene Set	0.002834	187	0.03628	186	Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP.	www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN	View Gene Set	0.002851	212	0.03628	186	Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199].	www.broad.mit.e...
Broad ROVERSI_GLIOMA_COPY_NUMBER_UP	View Gene Set	0.002908	82	0.0368	189	Genes in the most frequently gained loci in a panel of glioma cell lines.	www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION	View Gene Set	0.003083	154	0.03881	190	Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population.	www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP	View Gene Set	0.003148	422	0.03922	191	Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN	View Gene Set	0.003138	46	0.03922	191	Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone.	www.broad.mit.e...
Broad WU_APOPTOSIS_BY_CDKN1A_VIA_TP53	View Gene Set	0.003572	36	0.04427	193	Genes downstream of both CDKN1A and TP53 [Gene ID=1026 7157] in 2774qw1 cells (ovarian cancer).	www.broad.mit.e...
Broad JAIN_NFKB_SIGNALING	View Gene Set	0.003613	73	0.04454	194	Genes abnormally regulated in response to CD40L and IL4 [Gene ID=959 3565] stimulation of B lymphocytes from patients with a hypomorphic mutation of IKBKG [Gene ID=8517].	www.broad.mit.e...
Broad CAMPS_COLON_CANCER_COPY_NUMBER_UP	View Gene Set	0.0037	75	0.04539	195	Genes from chromosomal copy number gains in a panel of 51 primary colon carcinoma samples.	www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN	View Gene Set	0.0039	1209	0.04759	196	Genes down-regulated in brain from patients with Alzheimer's disease.	www.broad.mit.e...
Broad TURJANSKI_MAPK8_AND_MAPK9_TARGETS	View Gene Set	0.004133	7	0.04993	197	Examples of transcription factors whose activities are regulated by MAPK8 and MAPK9 [Gene ID=5599 5601].	www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_DN	View Gene Set	0.004133	25	0.04993	197	Genes down-regulated in EVSA-T cells (breast cancer) treated THC (delta-9-tetrahydrocannabinol) [PubChem=6610319].	www.broad.mit.e...
Broad SHAFFER_IRF4_TARGETS_IN_ACTIVATED_DENDRITIC_CELL	View Gene Set	0.004156	62	0.04996	199	IRF4 [Gene ID=3662] target genes up-regulated in plasmacytoid dendritic cells compared to monocytes.	www.broad.mit.e...

Gene Set Collection: Broad.c2.CP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLS	View Gene Set	0.0002793	42	0.004376	1	Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway.	www.broad.mit.e...
Broad SIG_CD40PATHWAYMAP	View Gene Set	0.0001938	33	0.004376	1	Genes related to CD40 signaling	www.broad.mit.e...
Broad SIG_BCR_SIGNALING_PATHWAY	View Gene Set	0.0001958	46	0.004376	1	Members of the BCR signaling pathway	www.broad.mit.e...
Broad SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES	View Gene Set	0.0007703	49	0.009051	4	Genes related to the insulin receptor pathway	www.broad.mit.e...
Broad SA_B_CELL_RECEPTOR_COMPLEXES	View Gene Set	0.003455	24	0.03248	5	Antigen binding to B cell receptors activates protein tyrosine kinases such as the Src family which ultimate activate MAP kinases.	www.broad.mit.e...
Broad ST_GA13_PATHWAY	View Gene Set	0.004945	35	0.03594	6	G alpha 13 Pathway	www.broad.mit.e...
Broad SA_PTEN_PATHWAY	View Gene Set	0.005626	16	0.03594	6	PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate.	www.broad.mit.e...
Broad SA_TRKA_RECEPTOR	View Gene Set	0.006118	15	0.03594	6	The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad BIOCARTA_NDKDYNAMIN_PATHWAY	View Gene Set	3.038e-05	19	0.005602	1	Endocytotic role of NDK Phosphins and Dynamin	www.broad.mit.e...
Broad BIOCARTA_MAPK_PATHWAY	View Gene Set	5.163e-05	87	0.005602	1	MAPKinase Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_HDAC_PATHWAY	View Gene Set	0.000174	30	0.01259	3	Control of skeletal myogenesis by HDAC and calcium/calmodulin-dependent kinase (CaMK)	www.broad.mit.e...
Broad BIOCARTA_AT1R_PATHWAY	View Gene Set	0.0004448	34	0.01931	4	Angiotensin II mediated activation of JNK Pathway via Pyk2 dependent signaling	www.broad.mit.e...
Broad BIOCARTA_CREB_PATHWAY	View Gene Set	0.0003575	27	0.01931	4	Transcription factor CREB and its extracellular signals	www.broad.mit.e...
Broad BIOCARTA_MPR_PATHWAY	View Gene Set	0.0009894	34	0.02476	6	How Progesterone Initiates Oocyte Membrane	www.broad.mit.e...
Broad BIOCARTA_PYK2_PATHWAY	View Gene Set	0.0009259	29	0.02476	6	Links between Pyk2 and Map Kinases	www.broad.mit.e...
Broad BIOCARTA_MAL_PATHWAY	View Gene Set	0.001027	19	0.02476	6	Role of MAL in Rho-Mediated Activation of SRF	www.broad.mit.e...
Broad BIOCARTA_CARM1_PATHWAY	View Gene Set	0.0006907	13	0.02476	6	Transcription Regulation by Methyltransferase of CARM1	www.broad.mit.e...
Broad BIOCARTA_SRCRPTP_PATHWAY	View Gene Set	0.001283	11	0.02784	10	Activation of Src by Protein-tyrosine phosphatase alpha	www.broad.mit.e...
Broad BIOCARTA_SHH_PATHWAY	View Gene Set	0.001424	16	0.0281	11	Sonic Hedgehog (Shh) Pathway	www.broad.mit.e...
Broad BIOCARTA_VIP_PATHWAY	View Gene Set	0.001586	27	0.02869	12	Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells	www.broad.mit.e...
Broad BIOCARTA_INTEGRIN_PATHWAY	View Gene Set	0.001886	38	0.02923	13	Integrin Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_NFAT_PATHWAY	View Gene Set	0.001784	54	0.02923	13	NFAT and Hypertrophy of the heart (Transcription in the broken heart)	www.broad.mit.e...
Broad BIOCARTA_HCMV_PATHWAY	View Gene Set	0.002683	17	0.03064	15	Human Cytomegalovirus and Map Kinase Pathways	www.broad.mit.e...
Broad BIOCARTA_P38MAPK_PATHWAY	View Gene Set	0.002584	40	0.03064	15	p38 MAPK Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_PLCE_PATHWAY	View Gene Set	0.002497	12	0.03064	15	Phospholipase C-epsilon pathway	www.broad.mit.e...
Broad BIOCARTA_RAS_PATHWAY	View Gene Set	0.002376	23	0.03064	15	Ras Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_UCALPAIN_PATHWAY	View Gene Set	0.002634	18	0.03064	15	uCalpain and friends in Cell spread	www.broad.mit.e...
Broad BIOCARTA_MCALPAIN_PATHWAY	View Gene Set	0.002956	25	0.03103	20	mCalpain and friends in Cell motility	www.broad.mit.e...
Broad BIOCARTA_RHO_PATHWAY	View Gene Set	0.003003	32	0.03103	20	Rho cell motility signaling pathway	www.broad.mit.e...
Broad BIOCARTA_FCER1_PATHWAY	View Gene Set	0.003169	39	0.03126	22	Fc Epsilon Receptor I Signaling in Mast Cells	www.broad.mit.e...
Broad BIOCARTA_RB_PATHWAY	View Gene Set	0.003523	13	0.03324	23	RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage	www.broad.mit.e...
Broad BIOCARTA_CFTR_PATHWAY	View Gene Set	0.003679	12	0.03326	24	Cystic Fibrosis Transmembrane Conductance Regulator And Beta 2 Adrenergic Receptor Pathway	www.broad.mit.e...
Broad BIOCARTA_AKAPCENTROSOME_PATHWAY	View Gene Set	0.004299	15	0.03732	25	Protein Kinase A at the Centrosome	www.broad.mit.e...
Broad BIOCARTA_MCM_PATHWAY	View Gene Set	0.005469	18	0.04364	26	CDK Regulation of DNA Replication	www.broad.mit.e...
Broad BIOCARTA_NOS1_PATHWAY	View Gene Set	0.005832	22	0.04364	26	Nitric Oxide Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_BAD_PATHWAY	View Gene Set	0.005825	26	0.04364	26	Regulation of BAD phosphorylation	www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY	View Gene Set	0.005421	10	0.04364	26	Role of Ran in mitotic spindle regulation	www.broad.mit.e...
Broad BIOCARTA_ACH_PATHWAY	View Gene Set	0.006103	16	0.04414	30	Role of nicotinic acetylcholine receptors in the regulation of apoptosis	www.broad.mit.e...
Broad BIOCARTA_MET_PATHWAY	View Gene Set	0.006707	37	0.04695	31	Signaling of Hepatocyte Growth Factor Receptor	www.broad.mit.e...
Broad BIOCARTA_CERAMIDE_PATHWAY	View Gene Set	0.007277	22	0.04834	32	Ceramide Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_EGFR_SMRTE_PATHWAY	View Gene Set	0.007518	11	0.04834	32	Map Kinase Inactivation of SMRT Corepressor	www.broad.mit.e...
Broad BIOCARTA_AKAP13_PATHWAY	View Gene Set	0.007575	12	0.04834	32	Rho-Selective Guanine Exchange Factor AKAP13 Mediates Stress Fiber Formation	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KEGG_NEUROTROPHIN_SIGNALING_PATHWAY	View Gene Set	1.14e-05	126	0.00106	1	Neurotrophin signaling pathway	www.broad.mit.e...
Broad KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION	View Gene Set	9.018e-06	86	0.00106	1	Progesterone-mediated oocyte maturation	www.broad.mit.e...
Broad KEGG_DNA_REPLICATION	View Gene Set	2.658e-05	36	0.001648	3	DNA replication	www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION	View Gene Set	0.000124	59	0.005765	4	RNA degradation	www.broad.mit.e...
Broad KEGG_PENTOSE_PHOSPHATE_PATHWAY	View Gene Set	0.0003756	27	0.01085	5	Pentose phosphate pathway	www.broad.mit.e...
Broad KEGG_CELL_CYCLE	View Gene Set	0.0004084	128	0.01085	5	Cell cycle	www.broad.mit.e...
Broad KEGG_OOCYTE_MEIOSIS	View Gene Set	0.0003533	114	0.01085	5	Oocyte meiosis	www.broad.mit.e...
Broad KEGG_CHRONIC_MYELOID_LEUKEMIA	View Gene Set	0.001082	73	0.02517	8	Chronic myeloid leukemia	www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.001579	44	0.02937	9	Nucleotide excision repair	www.broad.mit.e...
Broad KEGG_ERBB_SIGNALING_PATHWAY	View Gene Set	0.001575	87	0.02937	9	ErbB signaling pathway	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad REACTOME_METABOLISM_OF_RNA	View Gene Set	1.164e-08	95	5.005e-06	1	Genes involved in Metabolism of RNA	www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE	View Gene Set	1.774e-07	77	2.543e-05	2	Genes involved in Telomere Maintenance	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION	View Gene Set	1.372e-07	188	2.543e-05	2	Genes involved in Transcription	www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	View Gene Set	7.525e-07	128	8.09e-05	4	Genes involved in Processing of Capped Intron-Containing Pre-mRNA	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC	View Gene Set	2.013e-06	306	0.0001443	5	Genes involved in Cell Cycle Mitotic	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION	View Gene Set	2.01e-06	120	0.0001443	5	Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS	View Gene Set	3.738e-06	43	0.0002296	7	Genes involved in G2/M Checkpoints	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS	View Gene Set	6.816e-06	37	0.0002665	8	Genes involved in Activation of ATR in response to replication stress	www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION	View Gene Set	6.527e-06	31	0.0002665	8	Genes involved in DNA strand elongation	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING	View Gene Set	6.639e-06	97	0.0002665	8	Genes involved in mRNA Splicing	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA	View Gene Set	5.649e-06	45	0.0002665	8	Genes involved in Metabolism of mRNA	www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS	View Gene Set	8.442e-06	124	0.0003025	12	Genes involved in Elongation and Processing of Capped Transcripts	www.broad.mit.e...
Broad REACTOME_ERK_MAPK_TARGETS	View Gene Set	1.567e-05	21	0.0005182	13	Genes involved in ERK/MAPK targets	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX	View Gene Set	2.024e-05	30	0.000583	14	Genes involved in Activation of the pre-replicative complex	www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT	View Gene Set	2.169e-05	142	0.000583	14	Genes involved in Formation and Maturation of mRNA Transcript	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING	View Gene Set	2.082e-05	59	0.000583	14	Genes involved in RNA Polymerase I Promoter Opening	www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES	View Gene Set	5.87e-05	28	0.001485	17	Genes involved in Extension of Telomeres	www.broad.mit.e...
Broad REACTOME_SIGNALLING_BY_NGF	View Gene Set	7.306e-05	216	0.001745	18	Genes involved in Signalling by NGF	www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING	View Gene Set	8.95e-05	61	0.001749	19	Genes involved in Clathrin derived vesicle budding	www.broad.mit.e...
Broad REACTOME_DNA_REPAIR	View Gene Set	8.767e-05	102	0.001749	19	Genes involved in DNA Repair	www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE	View Gene Set	8.72e-05	92	0.001749	19	Genes involved in Mitotic Prometaphase	www.broad.mit.e...
Broad REACTOME_NUCLEAR_EVENTS_KINASE_AND_TRANSCRIPTION_FACTOR_ACTIVATION	View Gene Set	7.767e-05	24	0.001749	19	Genes involved in Nuclear Events (kinase and transcription factor activation)	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER	View Gene Set	9.868e-05	44	0.001845	23	Genes involved in Transcription-coupled NER (TC-NER)	www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.0001041	49	0.001866	24	Genes involved in Nucleotide Excision Repair	www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION	View Gene Set	0.0001443	15	0.002482	25	Genes involved in Cyclin A1 associated events during G2/M transition	www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE	View Gene Set	0.0001586	36	0.002624	26	Genes involved in Pyruvate metabolism and TCA cycle	www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA	View Gene Set	0.0001771	21	0.00282	27	Genes involved in Deadenylation of mRNA	www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION	View Gene Set	0.000213	415	0.003053	28	Genes involved in Gene Expression	www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE	View Gene Set	0.0002125	103	0.003053	28	Genes involved in HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY	View Gene Set	0.0002	50	0.003053	28	Genes involved in snRNP Assembly	www.broad.mit.e...
Broad REACTOME_SIGNALLING_TO_ERKS	View Gene Set	0.0002232	34	0.003096	31	Genes involved in Signalling to ERKs	www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS	View Gene Set	0.0002394	20	0.003216	32	Genes involved in Lagging Strand Synthesis	www.broad.mit.e...
Broad REACTOME_MAPK_TARGETS_NUCLEAR_EVENTS_MEDIATED_BY_MAP_KINASES	View Gene Set	0.0002927	30	0.003814	33	Genes involved in MAPK targets/Nuclear events mediated by MAP kinases	www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS	View Gene Set	0.0003351	49	0.004238	34	Genes involved in Packaging Of Telomere Ends	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE	View Gene Set	0.0006788	82	0.008107	35	Genes involved in RNA PolymerasePromoter Clearance	www.broad.mit.e...
Broad REACTOME_SIGNALLING_TO_RAS	View Gene Set	0.0006679	26	0.008107	35	Genes involved in Signalling to RAS	www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS	View Gene Set	0.0008093	54	0.009223	37	Genes involved in Golgi Associated Vesicle Biogenesis	www.broad.mit.e...
Broad REACTOME_ERKS_ARE_INACTIVATED	View Gene Set	0.000815	12	0.009223	37	Genes involved in ERKs are inactivated	www.broad.mit.e...
Broad REACTOME_MAP_KINASES_ACTIVATION_IN_TLR_CASCADE	View Gene Set	0.0009286	44	0.01024	39	Genes involved in MAP kinases activation in TLR cascade	www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE	View Gene Set	0.0009736	90	0.0103	40	Genes involved in Late Phase of HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_MEMBRANE_TRAFFICKING	View Gene Set	0.001006	78	0.0103	40	Genes involved in Membrane Trafficking	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES	View Gene Set	0.0009863	119	0.0103	40	Genes involved in Metabolism of carbohydrates	www.broad.mit.e...
Broad REACTOME_FURTHER_PLATELET_RELEASATE	View Gene Set	0.00129	24	0.0129	43	Genes involved in Further platelet releasate	www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER	View Gene Set	0.001688	33	0.0165	44	Genes involved in Global Genomic NER (GG-NER)	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION	View Gene Set	0.001753	34	0.01675	45	Genes involved in RNA Polymerase III Transcription	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION	View Gene Set	0.001831	83	0.01711	46	Genes involved in RNA Polymerase II Transcription	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT	View Gene Set	0.002049	42	0.01875	47	Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript	www.broad.mit.e...
Broad REACTOME_DARPP32_EVENTS	View Gene Set	0.002152	26	0.01888	48	Genes involved in DARPP-32 events	www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING	View Gene Set	0.002112	25	0.01888	48	Genes involved in mRNA 3-end processing	www.broad.mit.e...
Broad REACTOME_TRAF6_MEDIATED_INDUCTION_OF_THE_ANTIVIRAL_CYTOKINE_IFN_ALPHA_BETA_CASCADE	View Gene Set	0.002273	53	0.01955	50	Genes involved in TRAF6 Mediated Induction of the antiviral cytokine IFN-alphaeta cascade	www.broad.mit.e...
Broad REACTOME_DOWN_STREAM_SIGNAL_TRANSDUCTION	View Gene Set	0.002435	35	0.02017	51	Genes involved in Down-stream signal transduction	www.broad.mit.e...
Broad REACTOME_SEMA4D_IN_SEMAPHORIN_SIGNALING	View Gene Set	0.002533	29	0.02017	51	Genes involved in Sema4D in semaphorin signaling	www.broad.mit.e...
Broad REACTOME_SHC_RELATED_EVENTS	View Gene Set	0.00252	14	0.02017	51	Genes involved in SHC-related events	www.broad.mit.e...
Broad REACTOME_TOLL_LIKE_RECEPTOR_3_CASCADE	View Gene Set	0.00252	59	0.02017	51	Genes involved in Toll Like Receptor 3 (TLR3) Cascade	www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE	View Gene Set	0.002966	15	0.02319	55	Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase	www.broad.mit.e...
Broad REACTOME_INTEGRATION_OF_ENERGY_METABOLISM	View Gene Set	0.00306	229	0.02349	56	Genes involved in Integration of energy metabolism	www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES	View Gene Set	0.003145	157	0.02372	57	Genes involved in Mitotic M-M/G1 phases	www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM	View Gene Set	0.003347	18	0.02481	58	Genes involved in Pyruvate metabolism	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA	View Gene Set	0.003535	32	0.02576	59	Genes involved in Transport of the SLBP independent Mature mRNA	www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA	View Gene Set	0.003661	31	0.02624	60	Genes involved in Rev-mediated nuclear export of HIV-1 RNA	www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN	View Gene Set	0.003729	30	0.02629	61	Genes involved in Nuclear import of Rev protein	www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR	View Gene Set	0.004093	21	0.02839	62	Genes involved in Double-Strand Break Repair	www.broad.mit.e...
Broad REACTOME_SEMA4D_INDUCED_CELL_MIGRATION_AND_GROWTH_CONE_COLLAPSE	View Gene Set	0.00439	24	0.02996	63	Genes involved in Sema4D induced cell migration and growth-cone collapse	www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA	View Gene Set	0.004562	11	0.03065	64	Genes involved in Unwinding of DNA	www.broad.mit.e...
Broad REACTOME_TRKA_SIGNALLING_FROM_THE_PLASMA_MEMBRANE	View Gene Set	0.004854	103	0.03211	65	Genes involved in TRKA signalling from the plasma membrane	www.broad.mit.e...
Broad REACTOME_POLYMERASE_SWITCHING	View Gene Set	0.004998	14	0.03257	66	Genes involved in Polymerase switching	www.broad.mit.e...
Broad REACTOME_CITRIC_ACID_CYCLE	View Gene Set	0.005521	19	0.03491	67	Genes involved in Citric acid cycle (TCA cycle)	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_TERMINATION	View Gene Set	0.005508	17	0.03491	67	Genes involved in RNA Polymerase III Transcription Termination	www.broad.mit.e...
Broad REACTOME_ADHERENS_JUNCTIONS_INTERACTIONS	View Gene Set	0.00598	29	0.03621	69	Genes involved in Adherens junctions interactions	www.broad.mit.e...
Broad REACTOME_PLC_GAMMA1_SIGNALLING	View Gene Set	0.005943	35	0.03621	69	Genes involved in PLC-gamma1 signalling	www.broad.mit.e...
Broad REACTOME_S_PHASE	View Gene Set	0.005876	103	0.03621	69	Genes involved in S Phase	www.broad.mit.e...
Broad REACTOME_FRS2_MEDIATED_ACTIVATION	View Gene Set	0.006349	16	0.03762	72	Genes involved in Frs2-mediated activation	www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE	View Gene Set	0.006387	14	0.03762	72	Genes involved in Removal of the Flap Intermediate	www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_TC_NER	View Gene Set	0.006576	28	0.03821	74	Genes involved in Dual incision reaction in TC-NER	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION_FROM_TYPE_2_PROMOTER	View Gene Set	0.007737	20	0.04378	75	Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter	www.broad.mit.e...
Broad REACTOME_SHC_MEDIATED_SIGNALLING	View Gene Set	0.007707	12	0.04378	75	Genes involved in SHC-mediated signalling	www.broad.mit.e...
Broad REACTOME_TIE2_SIGNALING	View Gene Set	0.008154	18	0.04553	77	Genes involved in Tie2 Signaling	www.broad.mit.e...
Broad REACTOME_CELL_CELL_ADHESION_SYSTEMS	View Gene Set	0.008459	59	0.04598	78	Genes involved in Cell-cell adhesion systems	www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC	View Gene Set	0.008554	17	0.04598	78	Genes involved in Phosphorylation of the APC/C	www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_EGFR	View Gene Set	0.008505	48	0.04598	78	Genes involved in Signaling by EGFR	www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad ACTGTGA MIR-27A MIR-27B	View Gene Set	3.313e-09	385	7.322e-07	1	Targets of MicroRNA ACTGTGA MIR-27A MIR-27B	www.broad.mit.e... MIR-27A... MIR-27B...
Broad ACATTCC MIR-1 MIR-206	View Gene Set	0.0001186	248	0.01311	2	Targets of MicroRNA ACATTCC MIR-1 MIR-206	www.broad.mit.e... MIR-1... MIR-206...
Broad ACACTCC MIR-122A	View Gene Set	0.0003561	67	0.02623	3	Targets of MicroRNA ACACTCC MIR-122A	www.broad.mit.e... MIR-122A...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad GGGCGGR_V$SP1_Q6	View Gene Set	1.511e-11	2120	9.29e-09	1	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor	www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6	View Gene Set	1.202e-08	289	3.696e-06	2	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad CACGTG_V$MYC_Q2	View Gene Set	4.155e-07	734	8.518e-05	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad V$USF_Q6	View Gene Set	1.12e-06	178	0.0001372	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GYCACGTGNC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_03	View Gene Set	1.286e-06	171	0.0001372	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$YY1_Q6	View Gene Set	1.339e-06	166	0.0001372	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad V$E2F1_Q3_01	View Gene Set	2.713e-06	188	0.0002384	7	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGGCGCGRAANNGNM which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$MYCMAX_01	View Gene Set	4.005e-06	189	0.0003079	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$AP2_Q6_01	View Gene Set	5.423e-06	181	0.0003389	9	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SNNNCCNCAGGCN which matches annotation for GTF3A: general transcription factor IIIA	www.broad.mit.e...
Broad V$E2F_Q6_01	View Gene Set	5.51e-06	167	0.0003389	9	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02	View Gene Set	6.169e-06	784	0.0003449	11	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family	www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6	View Gene Set	8.757e-06	580	0.0004488	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1	www.broad.mit.e...
Broad V$NFMUE1_Q6	View Gene Set	9.961e-06	175	0.0004712	13	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_01	View Gene Set	1.434e-05	55	0.0006301	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TWSGCGCGAAAAYKR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGCNKCCATNK_UNKNOWN	View Gene Set	3.074e-05	84	0.00126	15	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNKCCATNK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$GABP_B	View Gene Set	4.321e-05	162	0.001661	16	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2	www.broad.mit.e...
Broad V$E2F1_Q6_01	View Gene Set	7.052e-05	177	0.00241	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad KRCTCNNNNMANAGC_UNKNOWN	View Gene Set	6.948e-05	60	0.00241	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KRCTCNNNNMANAGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGGYGTGNY_UNKNOWN	View Gene Set	7.656e-05	487	0.002478	19	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGGYGTGNY. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$NMYC_01	View Gene Set	8.412e-05	201	0.002587	20	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCCACGTGNNN which matches annotation for MYCN: v-myc myelocytomatosis viral related oncogene neuroblastoma derived (avian)	www.broad.mit.e...
Broad V$E2F1_Q4	View Gene Set	9.749e-05	178	0.002725	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad YGCGYRCGC_UNKNOWN	View Gene Set	9.384e-05	207	0.002725	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCGYRCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q4_01	View Gene Set	0.0001069	171	0.002858	23	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$USF_Q6_01	View Gene Set	0.0001194	168	0.003059	24	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NRCCACGTGASN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$YY1_02	View Gene Set	0.0001466	168	0.003254	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNCGGCCATCTTGNCTSNW which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad V$STAT1_02	View Gene Set	0.0001481	179	0.003254	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CANTTCCS which matches annotation for STAT1: signal transducer and activator of transcription 1 91kDa	www.broad.mit.e...
Broad CTTTGT_V$LEF1_Q2	View Gene Set	0.0001439	1458	0.003254	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGT which matches annotation for LEF1: lymphoid enhancer-binding factor 1	www.broad.mit.e...
Broad GGGAGGRR_V$MAZ_Q6	View Gene Set	0.0001422	1701	0.003254	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAGGRR which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor)	www.broad.mit.e...
Broad V$SPZ1_01	View Gene Set	0.0002549	189	0.005405	29	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif DNNGGRGGGWWNNNN which matches annotation for SPZ1: spermatogenic leucine zipper 1	www.broad.mit.e...
Broad V$MAX_01	View Gene Set	0.0002995	194	0.006028	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X	www.broad.mit.e...
Broad V$USF_C	View Gene Set	0.0003136	211	0.006028	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NCACGTGN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYC_Q2	View Gene Set	0.000309	135	0.006028	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTGS which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad CCAWNWWNNNGGC_UNKNOWN	View Gene Set	0.0003489	56	0.006502	33	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CCAWNWWNNNGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad ACTAYRNNNCCCR_UNKNOWN	View Gene Set	0.0004726	293	0.008212	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACTAYRNNNCCCR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$PAX4_01	View Gene Set	0.0005074	201	0.008212	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGNVGTCANGCGTGNNSNNYN which matches annotation for PAX4: paired box gene 4	www.broad.mit.e...
Broad V$E2F_Q3	View Gene Set	0.0004627	162	0.008212	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q6	View Gene Set	0.00049	167	0.008212	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$HIF1_Q3	View Gene Set	0.0004951	161	0.008212	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GNNKACGTGCGGNN which matches annotation for HIF1A: hypoxia-inducible factor 1 alpha subunit (basic helix-loop-helix transcription factor)	www.broad.mit.e...
Broad V$ARNT_01	View Gene Set	0.0006358	196	0.01003	39	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator	www.broad.mit.e...
Broad RNGTGGGC_UNKNOWN	View Gene Set	0.0006815	557	0.01048	40	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RNGTGGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad AAGWWRNYGGC_UNKNOWN	View Gene Set	0.0009216	85	0.01366	41	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AAGWWRNYGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$EGR2_01	View Gene Set	0.0009327	145	0.01366	41	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGCGTRGGCGK which matches annotation for EGR2: early growth response 2 (Krox-20 homolog Drosophila)	www.broad.mit.e...
Broad TGCGCANK_UNKNOWN	View Gene Set	0.00126	361	0.01802	43	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGCGCANK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF_01	View Gene Set	0.001298	186	0.01812	44	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$ETF_Q6	View Gene Set	0.001326	77	0.01812	44	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GVGGMGG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF2_Q6	View Gene Set	0.001375	182	0.01839	46	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CASGYG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$ZF5_B	View Gene Set	0.001483	184	0.0194	47	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NRNGNGCGCGCWN which matches annotation for ZFP161: zinc finger protein 161 homolog (mouse)	www.broad.mit.e...
Broad V$E2F1DP1_01	View Gene Set	0.001698	169	0.02088	48	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP2_01	View Gene Set	0.001698	169	0.02088	48	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F4DP2_01	View Gene Set	0.001698	169	0.02088	48	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad RYTTCCTG_V$ETS2_B	View Gene Set	0.001945	809	0.02346	51	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RYTTCCTG which matches annotation for ETS2: v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)	www.broad.mit.e...
Broad V$ELK1_02	View Gene Set	0.002038	170	0.02365	52	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNCCGGAARTNN which matches annotation for ELK1: ELK1 member of ETS oncogene family	www.broad.mit.e...
Broad V$STAT1_01	View Gene Set	0.002012	49	0.02365	52	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNSANTTCCGGGAANTGNSN which matches annotation for STAT1: signal transducer and activator of transcription 1 91kDa	www.broad.mit.e...
Broad V$MYCMAX_B	View Gene Set	0.002167	193	0.02468	54	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$E2F1_Q3	View Gene Set	0.002249	176	0.02484	55	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad GCTNWTTGK_UNKNOWN	View Gene Set	0.002262	227	0.02484	55	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCTNWTTGK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$PAX5_01	View Gene Set	0.002412	115	0.02602	57	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif BCNNNRNGCANBGNTGNRTAGCSGCHNB which matches annotation for PAX5: paired box gene 5 (B-cell lineage specific activator)	www.broad.mit.e...
Broad V$MAZ_Q6	View Gene Set	0.002692	135	0.02806	58	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGGAGGG which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor)	www.broad.mit.e...
Broad V$E2F1_Q4_01	View Gene Set	0.002691	167	0.02806	58	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_02	View Gene Set	0.002768	169	0.02837	60	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad WWTAAGGC_UNKNOWN	View Gene Set	0.002898	118	0.02921	61	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif WWTAAGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$AHR_01	View Gene Set	0.003093	52	0.02972	62	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCYCNRRSTNGCGTGASA which matches annotation for AHR: aryl hydrocarbon receptor	www.broad.mit.e...
Broad GKCGCNNNNNNNTGAYG_UNKNOWN	View Gene Set	0.003035	41	0.02972	62	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GKCGCNNNNNNNTGAYG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGGTGGRR_V$PAX4_03	View Gene Set	0.003074	994	0.02972	62	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGTGGRR which matches annotation for PAX4: paired box gene 4	www.broad.mit.e...
Broad V$E2F_Q4	View Gene Set	0.003344	166	0.03164	65	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$HNF4_01	View Gene Set	0.003548	193	0.03223	66	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNRGGNCAAAGKTCANNN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha	www.broad.mit.e...
Broad V$E2F_Q6	View Gene Set	0.003606	165	0.03223	66	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$CACCCBINDINGFACTOR_Q6	View Gene Set	0.003546	203	0.03223	66	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CANCCNNWGGGTGDGG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$AP4_Q6_01	View Gene Set	0.003616	191	0.03223	66	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RNCAGCTGC which matches annotation for TFAP4: transcription factor AP-4 (activating enhancer binding protein 4)	www.broad.mit.e...
Broad V$SREBP1_01	View Gene Set	0.003727	133	0.03229	70	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1	www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01	View Gene Set	0.003699	122	0.03229	70	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad KCCGNSWTTT_UNKNOWN	View Gene Set	0.003896	76	0.03327	72	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KCCGNSWTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGAMTNNNNNTCCY_UNKNOWN	View Gene Set	0.004536	85	0.03822	73	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGAMTNNNNNTCCY. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYOGENIN_Q6	View Gene Set	0.00461	187	0.03831	74	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RGCAGSTG which matches annotation for MYOG: myogenin (myogenic factor 4)	www.broad.mit.e...
Broad V$AP2_Q6	View Gene Set	0.004989	188	0.04091	75	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MKCCCSCNGGCG which matches annotation for GTF3A: general transcription factor IIIA	www.broad.mit.e...
Broad V$SP1_Q4_01	View Gene Set	0.005253	181	0.04251	76	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGGGGCGGGGNN which matches annotation for SP1: Sp1 transcription factor	www.broad.mit.e...
Broad V$PPARA_02	View Gene Set	0.005457	96	0.04358	77	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNRGGTCATWGGGGTSANG which matches annotation for PPARA: peroxisome proliferative activated receptor alpha	www.broad.mit.e...
Broad V$HIF1_Q5	View Gene Set	0.006122	176	0.04591	78	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGTACGTGCNGB which matches annotation for HIF1A: hypoxia-inducible factor 1 alpha subunit (basic helix-loop-helix transcription factor)	www.broad.mit.e...
Broad V$MTF1_Q4	View Gene Set	0.006045	188	0.04591	78	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TBTGCACHCGGCCC which matches annotation for MTF1: metal-regulatory transcription factor 1	www.broad.mit.e...
Broad GATGKMRGCG_UNKNOWN	View Gene Set	0.006058	47	0.04591	78	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATGKMRGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F4DP1_01	View Gene Set	0.005975	174	0.04591	78	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad MCAATNNNNNGCG_UNKNOWN	View Gene Set	0.005825	62	0.04591	78	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif MCAATNNNNNGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$SP1_Q6	View Gene Set	0.006328	177	0.04689	83	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGGGGGCGGGGYN which matches annotation for SP1: Sp1 transcription factor	www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B	View Gene Set	0.006629	512	0.04853	84	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2	www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad MORF_GNB1	View Gene Set	6.912e-18	276	2.952e-15	1	Neighborhood of GNB1	www.broad.mit.e...
Broad MORF_EIF3S2	View Gene Set	5.646e-15	220	1.205e-12	2	Neighborhood of EIF3S2	www.broad.mit.e...
Broad MORF_RAD23A	View Gene Set	1.525e-14	316	2.17e-12	3	Neighborhood of RAD23A	www.broad.mit.e...
Broad MORF_RPA2	View Gene Set	3.273e-14	170	3.494e-12	4	Neighborhood of RPA2	www.broad.mit.e...
Broad MORF_BUB3	View Gene Set	1.282e-13	256	1.005e-11	5	Neighborhood of BUB3	www.broad.mit.e...
Broad MORF_ACP1	View Gene Set	1.412e-13	178	1.005e-11	5	Neighborhood of ACP1	www.broad.mit.e...
Broad MORF_PRKDC	View Gene Set	1.983e-12	173	1.058e-10	7	Neighborhood of PRKDC	www.broad.mit.e...
Broad MORF_XRCC5	View Gene Set	1.91e-12	210	1.058e-10	7	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_DDB1	View Gene Set	2.611e-12	220	1.239e-10	9	Neighborhood of DDB1	www.broad.mit.e...
Broad MORF_AATF	View Gene Set	3.101e-12	179	1.324e-10	10	Neighborhood of AATF	www.broad.mit.e...
Broad MORF_PPP1CC	View Gene Set	9.123e-12	150	3.541e-10	11	Neighborhood of PPP1CC	www.broad.mit.e...
Broad MORF_HDAC1	View Gene Set	4.234e-11	222	1.507e-09	12	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_CSNK2B	View Gene Set	2.252e-10	256	7.398e-09	13	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_FBL	View Gene Set	4.115e-10	121	1.255e-08	14	Neighborhood of FBL	www.broad.mit.e...
Broad MORF_SOD1	View Gene Set	5.682e-10	247	1.617e-08	15	Neighborhood of SOD1	www.broad.mit.e...
Broad MORF_HDAC2	View Gene Set	8.88e-10	256	2.37e-08	16	Neighborhood of HDAC2	www.broad.mit.e...
Broad MORF_ANP32B	View Gene Set	2.773e-09	174	6.966e-08	17	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_UBE2I	View Gene Set	3.87e-09	208	9.179e-08	18	Neighborhood of UBE2I	www.broad.mit.e...
Broad MORF_PRKAG1	View Gene Set	4.606e-09	202	1.035e-07	19	Neighborhood of PRKAG1	www.broad.mit.e...
Broad MORF_DNMT1	View Gene Set	5.312e-09	105	1.134e-07	20	Neighborhood of DNMT1	www.broad.mit.e...
Broad MORF_G22P1	View Gene Set	1.472e-08	145	2.993e-07	21	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_SS18	View Gene Set	1.819e-08	55	3.531e-07	22	Neighborhood of SS18	www.broad.mit.e...
Broad MORF_DEK	View Gene Set	2.971e-08	229	5.516e-07	23	Neighborhood of DEK	www.broad.mit.e...
Broad GNF2_SMC4L1	View Gene Set	3.294e-08	75	5.861e-07	24	Neighborhood of SMC4L1	www.broad.mit.e...
Broad GNF2_CDC2	View Gene Set	5.766e-08	56	9.849e-07	25	Neighborhood of CDC2	www.broad.mit.e...
Broad MORF_RRM1	View Gene Set	6.194e-08	90	1.017e-06	26	Neighborhood of RRM1	www.broad.mit.e...
Broad MORF_PHB	View Gene Set	7.4e-08	112	1.17e-06	27	Neighborhood of PHB	www.broad.mit.e...
Broad GNF2_PCNA	View Gene Set	7.732e-08	62	1.179e-06	28	Neighborhood of PCNA	www.broad.mit.e...
Broad GNF2_APEX1	View Gene Set	9.017e-08	72	1.328e-06	29	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_MTA1	View Gene Set	9.426e-08	95	1.342e-06	30	Neighborhood of MTA1	www.broad.mit.e...
Broad GNF2_CENPF	View Gene Set	1.126e-07	56	1.551e-06	31	Neighborhood of CENPF	www.broad.mit.e...
Broad MORF_DAP3	View Gene Set	1.23e-07	175	1.607e-06	32	Neighborhood of DAP3	www.broad.mit.e...
Broad GNF2_MCM5	View Gene Set	1.242e-07	51	1.607e-06	32	Neighborhood of MCM5	www.broad.mit.e...
Broad GNF2_RFC4	View Gene Set	1.339e-07	57	1.681e-06	34	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_RAN	View Gene Set	1.444e-07	242	1.762e-06	35	Neighborhood of RAN	www.broad.mit.e...
Broad GNF2_RRM1	View Gene Set	1.814e-07	82	2.151e-06	36	Neighborhood of RRM1	www.broad.mit.e...
Broad GCM_APEX1	View Gene Set	2.016e-07	102	2.327e-06	37	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_ESPL1	View Gene Set	3.317e-07	58	3.727e-06	38	Neighborhood of ESPL1	www.broad.mit.e...
Broad GCM_CSNK2B	View Gene Set	3.965e-07	88	4.341e-06	39	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_CDC16	View Gene Set	4.699e-07	67	5.016e-06	40	Neighborhood of CDC16	www.broad.mit.e...
Broad MORF_RFC4	View Gene Set	7.91e-07	137	8.238e-06	41	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_AP2M1	View Gene Set	1.11e-06	197	1.129e-05	42	Neighborhood of AP2M1	www.broad.mit.e...
Broad GCM_RAF1	View Gene Set	1.169e-06	34	1.16e-05	43	Neighborhood of RAF1	www.broad.mit.e...
Broad MORF_RAC1	View Gene Set	1.338e-06	196	1.298e-05	44	Neighborhood of RAC1	www.broad.mit.e...
Broad MORF_DAP	View Gene Set	1.473e-06	72	1.398e-05	45	Neighborhood of DAP	www.broad.mit.e...
Broad MORF_BUB1B	View Gene Set	1.513e-06	61	1.404e-05	46	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_MAP2K2	View Gene Set	1.657e-06	123	1.505e-05	47	Neighborhood of MAP2K2	www.broad.mit.e...
Broad MORF_HAT1	View Gene Set	2.009e-06	155	1.787e-05	48	Neighborhood of HAT1	www.broad.mit.e...
Broad MORF_RAF1	View Gene Set	2.097e-06	94	1.827e-05	49	Neighborhood of RAF1	www.broad.mit.e...
Broad GNF2_MCM4	View Gene Set	2.416e-06	50	2.063e-05	50	Neighborhood of MCM4	www.broad.mit.e...
Broad GCM_CBFB	View Gene Set	2.501e-06	59	2.094e-05	51	Neighborhood of CBFB	www.broad.mit.e...
Broad GNF2_CCNB2	View Gene Set	2.736e-06	53	2.247e-05	52	Neighborhood of CCNB2	www.broad.mit.e...
Broad MORF_DEAF1	View Gene Set	2.991e-06	54	2.41e-05	53	Neighborhood of DEAF1	www.broad.mit.e...
Broad MORF_EIF4A2	View Gene Set	3.978e-06	120	3.146e-05	54	Neighborhood of EIF4A2	www.broad.mit.e...
Broad MORF_CTBP1	View Gene Set	4.123e-06	149	3.201e-05	55	Neighborhood of CTBP1	www.broad.mit.e...
Broad GNF2_CKS1B	View Gene Set	4.205e-06	36	3.206e-05	56	Neighborhood of CKS1B	www.broad.mit.e...
Broad GNF2_PA2G4	View Gene Set	4.651e-06	73	3.484e-05	57	Neighborhood of PA2G4	www.broad.mit.e...
Broad GNF2_CCNA2	View Gene Set	5.931e-06	62	4.367e-05	58	Neighborhood of CCNA2	www.broad.mit.e...
Broad GNF2_CDC20	View Gene Set	6.977e-06	52	5.049e-05	59	Neighborhood of CDC20	www.broad.mit.e...
Broad MORF_EI24	View Gene Set	7.101e-06	136	5.053e-05	60	Neighborhood of EI24	www.broad.mit.e...
Broad MORF_PPP2CA	View Gene Set	7.451e-06	110	5.216e-05	61	Neighborhood of PPP2CA	www.broad.mit.e...
Broad MORF_ERCC2	View Gene Set	7.72e-06	91	5.317e-05	62	Neighborhood of ERCC2	www.broad.mit.e...
Broad GNF2_RFC3	View Gene Set	7.996e-06	38	5.335e-05	63	Neighborhood of RFC3	www.broad.mit.e...
Broad GNF2_RRM2	View Gene Set	7.904e-06	36	5.335e-05	63	Neighborhood of RRM2	www.broad.mit.e...
Broad MORF_CCNI	View Gene Set	8.917e-06	76	5.858e-05	65	Neighborhood of CCNI	www.broad.mit.e...
Broad MORF_SMC1L1	View Gene Set	1.236e-05	47	7.996e-05	66	Neighborhood of SMC1L1	www.broad.mit.e...
Broad GNF2_CKS2	View Gene Set	1.27e-05	45	8.091e-05	67	Neighborhood of CKS2	www.broad.mit.e...
Broad GNF2_BUB1B	View Gene Set	1.393e-05	46	8.749e-05	68	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_RAB1A	View Gene Set	1.503e-05	179	9.304e-05	69	Neighborhood of RAB1A	www.broad.mit.e...
Broad GNF2_ESPL1	View Gene Set	1.748e-05	35	0.0001066	70	Neighborhood of ESPL1	www.broad.mit.e...
Broad GNF2_DEK	View Gene Set	2.03e-05	45	0.0001221	71	Neighborhood of DEK	www.broad.mit.e...
Broad GCM_PPP1CC	View Gene Set	2.086e-05	47	0.0001237	72	Neighborhood of PPP1CC	www.broad.mit.e...
Broad MORF_USP5	View Gene Set	2.27e-05	46	0.0001328	73	Neighborhood of USP5	www.broad.mit.e...
Broad MORF_PCNA	View Gene Set	2.37e-05	71	0.0001367	74	Neighborhood of PCNA	www.broad.mit.e...
Broad MORF_TPR	View Gene Set	2.484e-05	131	0.0001414	75	Neighborhood of TPR	www.broad.mit.e...
Broad GNF2_CENPE	View Gene Set	2.812e-05	37	0.000158	76	Neighborhood of CENPE	www.broad.mit.e...
Broad GNF2_HMMR	View Gene Set	3.287e-05	43	0.0001823	77	Neighborhood of HMMR	www.broad.mit.e...
Broad GCM_NF2	View Gene Set	3.333e-05	235	0.0001825	78	Neighborhood of NF2	www.broad.mit.e...
Broad MORF_PTPN11	View Gene Set	3.481e-05	93	0.0001882	79	Neighborhood of PTPN11	www.broad.mit.e...
Broad GNF2_FEN1	View Gene Set	4.551e-05	49	0.0002429	80	Neighborhood of FEN1	www.broad.mit.e...
Broad MORF_RAD54L	View Gene Set	4.805e-05	94	0.0002533	81	Neighborhood of RAD54L	www.broad.mit.e...
Broad MORF_CDK2	View Gene Set	5.775e-05	63	0.0003007	82	Neighborhood of CDK2	www.broad.mit.e...
Broad MORF_PAPSS1	View Gene Set	7.009e-05	98	0.0003606	83	Neighborhood of PAPSS1	www.broad.mit.e...
Broad GCM_DDX5	View Gene Set	9.019e-05	52	0.0004585	84	Neighborhood of DDX5	www.broad.mit.e...
Broad MORF_BUB1	View Gene Set	9.561e-05	49	0.0004747	85	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_RAB6A	View Gene Set	9.537e-05	63	0.0004747	85	Neighborhood of RAB6A	www.broad.mit.e...
Broad MORF_UBE2N	View Gene Set	0.0001015	79	0.0004981	87	Neighborhood of UBE2N	www.broad.mit.e...
Broad GNF2_FBL	View Gene Set	0.0001136	119	0.0005512	88	Neighborhood of FBL	www.broad.mit.e...
Broad GCM_ACTG1	View Gene Set	0.000122	113	0.0005854	89	Neighborhood of ACTG1	www.broad.mit.e...
Broad GCM_HDAC1	View Gene Set	0.0001323	30	0.0006206	90	Neighborhood of HDAC1	www.broad.mit.e...
Broad GCM_RAD21	View Gene Set	0.000132	30	0.0006206	90	Neighborhood of RAD21	www.broad.mit.e...
Broad MORF_FEN1	View Gene Set	0.0001509	58	0.000693	92	Neighborhood of FEN1	www.broad.mit.e...
Broad MORF_GPX4	View Gene Set	0.0001508	49	0.000693	92	Neighborhood of GPX4	www.broad.mit.e...
Broad GNF2_MSH2	View Gene Set	0.000157	26	0.0007133	94	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_NPM1	View Gene Set	0.0001607	152	0.0007224	95	Neighborhood of NPM1	www.broad.mit.e...
Broad GNF2_H2AFX	View Gene Set	0.0002114	28	0.0009404	96	Neighborhood of H2AFX	www.broad.mit.e...
Broad GNF2_RAN	View Gene Set	0.0002223	78	0.0009786	97	Neighborhood of RAN	www.broad.mit.e...
Broad MORF_MSH2	View Gene Set	0.0002318	52	0.00101	98	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_RAP1A	View Gene Set	0.000235	122	0.001013	99	Neighborhood of RAP1A	www.broad.mit.e...
Broad GNF2_TTK	View Gene Set	0.0002371	34	0.001013	99	Neighborhood of TTK	www.broad.mit.e...
Broad GNF2_BUB1	View Gene Set	0.000283	25	0.001196	101	Neighborhood of BUB1	www.broad.mit.e...
Broad GCM_NPM1	View Gene Set	0.0003071	108	0.001285	102	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_PRKAR1A	View Gene Set	0.0003221	133	0.001335	103	Neighborhood of PRKAR1A	www.broad.mit.e...
Broad GNF2_HAT1	View Gene Set	0.0003268	45	0.001342	104	Neighborhood of HAT1	www.broad.mit.e...
Broad MORF_EIF3S6	View Gene Set	0.0003364	108	0.001368	105	Neighborhood of EIF3S6	www.broad.mit.e...
Broad GNF2_SMC2L1	View Gene Set	0.0003954	30	0.001593	106	Neighborhood of SMC2L1	www.broad.mit.e...
Broad MORF_FANCG	View Gene Set	0.0004303	148	0.001717	107	Neighborhood of FANCG	www.broad.mit.e...
Broad GCM_TPR	View Gene Set	0.0004528	29	0.00179	108	Neighborhood of TPR	www.broad.mit.e...
Broad MORF_PPP5C	View Gene Set	0.0005106	81	0.001986	109	Neighborhood of PPP5C	www.broad.mit.e...
Broad GCM_BCL2L1	View Gene Set	0.0005162	25	0.001986	109	Neighborhood of BCL2L1	www.broad.mit.e...
Broad GCM_MSN	View Gene Set	0.0005116	24	0.001986	109	Neighborhood of MSN	www.broad.mit.e...
Broad GNF2_MLH1	View Gene Set	0.000562	36	0.002143	112	Neighborhood of MLH1	www.broad.mit.e...
Broad MORF_AP3D1	View Gene Set	0.0006199	119	0.002322	113	Neighborhood of AP3D1	www.broad.mit.e...
Broad MORF_HEAB	View Gene Set	0.0006185	71	0.002322	113	Neighborhood of HEAB	www.broad.mit.e...
Broad MORF_TERF1	View Gene Set	0.0006438	57	0.00239	115	Neighborhood of TERF1	www.broad.mit.e...
Broad MORF_BMI1	View Gene Set	0.0006913	71	0.002545	116	Neighborhood of BMI1	www.broad.mit.e...
Broad MORF_ACTG1	View Gene Set	0.0007054	134	0.002574	117	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_CDC10	View Gene Set	0.0007223	120	0.002596	118	Neighborhood of CDC10	www.broad.mit.e...
Broad GNF2_MSH6	View Gene Set	0.0007234	30	0.002596	118	Neighborhood of MSH6	www.broad.mit.e...
Broad MORF_FDXR	View Gene Set	0.0008112	205	0.002887	120	Neighborhood of FDXR	www.broad.mit.e...
Broad GCM_BMPR2	View Gene Set	0.0008418	68	0.00297	121	Neighborhood of BMPR2	www.broad.mit.e...
Broad MORF_RPA1	View Gene Set	0.0009475	55	0.003316	122	Neighborhood of RPA1	www.broad.mit.e...
Broad GCM_RAN	View Gene Set	0.0009641	160	0.003347	123	Neighborhood of RAN	www.broad.mit.e...
Broad MORF_IKBKG	View Gene Set	0.0009955	119	0.003428	124	Neighborhood of IKBKG	www.broad.mit.e...
Broad GNF2_NS	View Gene Set	0.001099	35	0.003756	125	Neighborhood of NS	www.broad.mit.e...
Broad MORF_ARAF1	View Gene Set	0.001347	70	0.004565	126	Neighborhood of ARAF1	www.broad.mit.e...
Broad GNF2_ANP32B	View Gene Set	0.00144	29	0.00484	127	Neighborhood of ANP32B	www.broad.mit.e...
Broad GCM_ANP32B	View Gene Set	0.001534	32	0.005119	128	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_TERF2IP	View Gene Set	0.001744	99	0.005773	129	Neighborhood of TERF2IP	www.broad.mit.e...
Broad GNF2_RPA1	View Gene Set	0.001898	20	0.006235	130	Neighborhood of RPA1	www.broad.mit.e...
Broad MORF_SKP1A	View Gene Set	0.002475	175	0.008069	131	Neighborhood of SKP1A	www.broad.mit.e...
Broad MORF_RFC1	View Gene Set	0.002641	98	0.008543	132	Neighborhood of RFC1	www.broad.mit.e...
Broad GCM_CALM1	View Gene Set	0.002866	91	0.0092	133	Neighborhood of CALM1	www.broad.mit.e...
Broad MORF_CDC2L5	View Gene Set	0.002993	127	0.009539	134	Neighborhood of CDC2L5	www.broad.mit.e...
Broad MORF_GMPS	View Gene Set	0.003049	48	0.009644	135	Neighborhood of GMPS	www.broad.mit.e...
Broad GCM_PSME1	View Gene Set	0.003593	76	0.01128	136	Neighborhood of PSME1	www.broad.mit.e...
Broad MORF_ORC1L	View Gene Set	0.004201	61	0.01309	137	Neighborhood of ORC1L	www.broad.mit.e...
Broad GNF2_SMC1L1	View Gene Set	0.004632	24	0.01433	138	Neighborhood of SMC1L1	www.broad.mit.e...
Broad GNF2_NPM1	View Gene Set	0.004665	57	0.01433	138	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_RAD23B	View Gene Set	0.004817	159	0.0146	140	Neighborhood of RAD23B	www.broad.mit.e...
Broad MORF_SNRP70	View Gene Set	0.00482	50	0.0146	140	Neighborhood of SNRP70	www.broad.mit.e...
Broad GCM_CRKL	View Gene Set	0.004972	50	0.01494	142	Neighborhood of CRKL	www.broad.mit.e...
Broad GCM_MYST2	View Gene Set	0.005003	138	0.01494	142	Neighborhood of MYST2	www.broad.mit.e...
Broad MORF_CSNK1D	View Gene Set	0.005297	65	0.01566	144	Neighborhood of CSNK1D	www.broad.mit.e...
Broad GCM_PFN1	View Gene Set	0.005318	47	0.01566	144	Neighborhood of PFN1	www.broad.mit.e...
Broad GCM_MLL	View Gene Set	0.005662	130	0.01652	146	Neighborhood of MLL	www.broad.mit.e...
Broad GNF2_MKI67	View Gene Set	0.005686	26	0.01652	146	Neighborhood of MKI67	www.broad.mit.e...
Broad GNF2_TDG	View Gene Set	0.006654	23	0.0192	148	Neighborhood of TDG	www.broad.mit.e...
Broad GCM_ING1	View Gene Set	0.006856	50	0.01965	149	Neighborhood of ING1	www.broad.mit.e...
Broad GCM_DFFA	View Gene Set	0.007581	100	0.02158	150	Neighborhood of DFFA	www.broad.mit.e...
Broad MORF_PPP1CA	View Gene Set	0.007859	145	0.02208	151	Neighborhood of PPP1CA	www.broad.mit.e...
Broad MORF_PTEN	View Gene Set	0.007836	80	0.02208	151	Neighborhood of PTEN	www.broad.mit.e...
Broad GCM_DENR	View Gene Set	0.008665	40	0.02418	153	Neighborhood of DENR	www.broad.mit.e...
Broad MORF_PSMF1	View Gene Set	0.01009	151	0.02798	154	Neighborhood of PSMF1	www.broad.mit.e...
Broad MORF_GSPT1	View Gene Set	0.01047	41	0.02883	155	Neighborhood of GSPT1	www.broad.mit.e...
Broad GCM_TINF2	View Gene Set	0.01067	33	0.02921	156	Neighborhood of TINF2	www.broad.mit.e...
Broad MORF_RBBP8	View Gene Set	0.01116	190	0.03034	157	Neighborhood of RBBP8	www.broad.mit.e...
Broad MORF_ERH	View Gene Set	0.01287	103	0.03477	158	Neighborhood of ERH	www.broad.mit.e...
Broad MORF_SART1	View Gene Set	0.01335	55	0.03579	159	Neighborhood of SART1	www.broad.mit.e...
Broad GCM_BECN1	View Gene Set	0.01341	59	0.03579	159	Neighborhood of BECN1	www.broad.mit.e...
Broad MORF_ATRX	View Gene Set	0.01402	185	0.0372	161	Neighborhood of ATRX	www.broad.mit.e...
Broad MORF_SP3	View Gene Set	0.01474	69	0.03885	162	Neighborhood of SP3	www.broad.mit.e...
Broad GNF2_XRCC5	View Gene Set	0.01502	61	0.03936	163	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_CUL1	View Gene Set	0.01626	62	0.04234	164	Neighborhood of CUL1	www.broad.mit.e...
Broad GCM_PTPRD	View Gene Set	0.01783	50	0.04615	165	Neighborhood of PTPRD	www.broad.mit.e...
Broad GCM_CASP2	View Gene Set	0.01813	21	0.04663	166	Neighborhood of CASP2	www.broad.mit.e...
Broad MORF_RAD21	View Gene Set	0.01885	157	0.04821	167	Neighborhood of RAD21	www.broad.mit.e...
Broad GNF2_BUB3	View Gene Set	0.01938	22	0.04927	168	Neighborhood of BUB3	www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad module_198	View Gene Set	1.143e-15	288	5.189e-13	1	Genes in module_198	www.broad.mit.e...
Broad module_98	View Gene Set	3.196e-14	375	5.005e-12	2	Genes in module_98	www.broad.mit.e...
Broad module_252	View Gene Set	3.307e-14	224	5.005e-12	2	Genes in module_252	www.broad.mit.e...
Broad module_54	View Gene Set	7.104e-14	242	8.063e-12	4	Genes in module_54	www.broad.mit.e...
Broad module_126	View Gene Set	6.777e-09	173	6.154e-07	5	Genes in module_126	www.broad.mit.e...
Broad module_125	View Gene Set	1.57e-08	42	1.188e-06	6	Genes in module_125	www.broad.mit.e...
Broad module_158	View Gene Set	3.343e-08	41	2.168e-06	7	Genes in module_158	www.broad.mit.e...
Broad module_17	View Gene Set	1.252e-07	351	7.108e-06	8	Genes in module_17	www.broad.mit.e...
Broad module_124	View Gene Set	1.835e-07	92	8.25e-06	9	Genes in module_124	www.broad.mit.e...
Broad module_244	View Gene Set	1.995e-07	182	8.25e-06	9	Genes in module_244	www.broad.mit.e...
Broad module_257	View Gene Set	1.999e-07	137	8.25e-06	9	Genes in module_257	www.broad.mit.e...
Broad module_3	View Gene Set	4.529e-07	374	1.713e-05	12	Genes in module_3	www.broad.mit.e...
Broad module_277	View Gene Set	6.774e-06	48	0.0002366	13	Genes in module_277	www.broad.mit.e...
Broad module_403	View Gene Set	8.31e-06	44	0.0002695	14	Genes in module_403	www.broad.mit.e...
Broad module_8	View Gene Set	6.003e-05	403	0.001817	15	Genes in module_8	www.broad.mit.e...
Broad module_149	View Gene Set	0.0001534	36	0.004354	16	Genes in module_149	www.broad.mit.e...
Broad module_32	View Gene Set	0.0001849	227	0.004663	17	Genes in module_32	www.broad.mit.e...
Broad module_278	View Gene Set	0.0001781	34	0.004663	17	Genes in module_278	www.broad.mit.e...
Broad module_57	View Gene Set	0.0001991	54	0.004757	19	Genes in module_57	www.broad.mit.e...
Broad module_18	View Gene Set	0.0002908	434	0.006601	20	Genes in module_18	www.broad.mit.e...
Broad module_127	View Gene Set	0.000371	26	0.007655	21	Genes in module_127	www.broad.mit.e...
Broad module_197	View Gene Set	0.0003703	170	0.007655	21	Genes in module_197	www.broad.mit.e...
Broad module_189	View Gene Set	0.0007085	23	0.01399	23	Genes in module_189	www.broad.mit.e...
Broad module_168	View Gene Set	0.0008828	22	0.01603	24	Genes in module_168	www.broad.mit.e...
Broad module_352	View Gene Set	0.0008704	17	0.01603	24	Genes in module_352	www.broad.mit.e...
Broad module_222	View Gene Set	0.0009379	22	0.01638	26	Genes in module_222	www.broad.mit.e...
Broad module_233	View Gene Set	0.001098	22	0.01846	27	Genes in module_233	www.broad.mit.e...
Broad module_115	View Gene Set	0.001244	27	0.02017	28	Genes in module_115	www.broad.mit.e...
Broad module_350	View Gene Set	0.001667	57	0.02522	29	Genes in module_350	www.broad.mit.e...
Broad module_567	View Gene Set	0.00163	90	0.02522	29	Genes in module_567	www.broad.mit.e...
Broad module_16	View Gene Set	0.002057	495	0.03013	31	Genes in module_16	www.broad.mit.e...
Broad module_552	View Gene Set	0.002322	18	0.03294	32	Genes in module_552	www.broad.mit.e...
Broad module_81	View Gene Set	0.00269	20	0.03701	33	Genes in module_81	www.broad.mit.e...
Broad module_4	View Gene Set	0.002781	21	0.03713	34	Genes in module_4	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad BIOPOLYMER_METABOLIC_PROCESS	View Gene Set	5.327e-12	1623	4.395e-09	1	Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	2.074e-09	1197	8.556e-07	2	Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS	View Gene Set	2.17e-07	253	5.968e-05	3	Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides.	www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS	View Gene Set	3.266e-07	801	6.05e-05	4	Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS	View Gene Set	3.667e-07	70	6.05e-05	4	Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes.	www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	8.512e-07	458	0.000117	6	Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell.	www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397	View Gene Set	1.336e-06	59	0.0001574	7	Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY	View Gene Set	2.965e-06	288	0.0003057	8	Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY	View Gene Set	3.931e-06	271	0.0003603	9	Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex.	www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS	View Gene Set	4.781e-06	779	0.0003944	10	Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	1.163e-05	767	0.0007994	11	Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS	View Gene Set	1.078e-05	159	0.0007994	11	Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.	www.broad.mit.e...
Broad DNA_REPAIR	View Gene Set	1.803e-05	123	0.001131	13	Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway.	www.broad.mit.e...
Broad RNA_PROCESSING	View Gene Set	1.92e-05	147	0.001131	13	Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	www.broad.mit.e...
Broad DNA_REPLICATION	View Gene Set	2.219e-05	101	0.001144	15	Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.	www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE	View Gene Set	2.189e-05	72	0.001144	15	Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS	View Gene Set	4.05e-05	124	0.001965	17	Genes annotated by the GO term GO:0051128. Any process that modulates the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.	www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS	View Gene Set	4.668e-05	197	0.00214	18	Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus.	www.broad.mit.e...
Broad PROTEIN_METABOLIC_PROCESS	View Gene Set	5.543e-05	1198	0.002287	19	Genes annotated by the GO term GO:0019538. The chemical reactions and pathways involving a specific protein rather than of proteins in general. Includes protein modification.	www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS	View Gene Set	5.493e-05	117	0.002287	19	Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY	View Gene Set	5.836e-05	74	0.002293	21	Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together.	www.broad.mit.e...
Broad CHROMATIN_MODIFICATION	View Gene Set	6.39e-05	50	0.002396	22	Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure.	www.broad.mit.e...
Broad REGULATION_OF_ORGANELLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	8.42e-05	39	0.00302	23	Genes annotated by the GO term GO:0033043. Any process that modulates the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of an organelle.	www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS	View Gene Set	8.852e-05	625	0.003043	24	Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.	www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION	View Gene Set	0.0001029	660	0.003264	25	Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.	www.broad.mit.e...
Broad TRANSCRIPTION	View Gene Set	0.0001022	738	0.003264	25	Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT	View Gene Set	0.0001303	623	0.003981	27	Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA.	www.broad.mit.e...
Broad ESTABLISHMENT_OF_CELLULAR_LOCALIZATION	View Gene Set	0.0001596	342	0.004703	28	Genes annotated by the GO term GO:0051649. The directed movement of a substance or cellular entity such as a protein complex or organelle to a specific location within or in the membrane of a cell.	www.broad.mit.e...
Broad CHROMATIN_REMODELING	View Gene Set	0.0001958	23	0.005353	29	Genes annotated by the GO term GO:0006338. Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.	www.broad.mit.e...
Broad INTRACELLULAR_TRANSPORT	View Gene Set	0.000202	271	0.005353	29	Genes annotated by the GO term GO:0046907. The directed movement of substances within a cell.	www.broad.mit.e...
Broad MITOSIS	View Gene Set	0.0002076	81	0.005353	29	Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother.	www.broad.mit.e...
Broad CHROMATIN_ASSEMBLY_OR_DISASSEMBLY	View Gene Set	0.0002007	26	0.005353	29	Genes annotated by the GO term GO:0006333. The formation or destruction of chromatin structures.	www.broad.mit.e...
Broad CELLULAR_LOCALIZATION	View Gene Set	0.0002437	360	0.006093	33	Genes annotated by the GO term GO:0051641. The processes by which a substance or cellular entity such as a protein complex or organelle is transported to and/or maintained in a specific location within or in the membrane of a cell.	www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS	View Gene Set	0.0002547	1085	0.00618	34	Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification.	www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	0.0002805	601	0.006612	35	Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	0.0003057	457	0.007005	36	Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_METABOLIC_PROCESS	View Gene Set	0.0003226	1099	0.007014	37	Genes annotated by the GO term GO:0044260. The chemical reactions and pathways involving macromolecules large molecules including proteins nucleic acids and carbohydrates as carried out by individual cells.	www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE	View Gene Set	0.0003231	83	0.007014	37	Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place.	www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.000359	449	0.007594	39	Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).	www.broad.mit.e...
Broad RNA_3END_PROCESSING	View Gene Set	0.0004184	10	0.00863	40	Genes annotated by the GO term GO:0031123. Any process involved in forming the mature 3' end of an RNA molecule.	www.broad.mit.e...
Broad CELL_CYCLE_PROCESS	View Gene Set	0.0004362	187	0.008777	41	Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad MITOCHONDRIAL_TRANSPORT	View Gene Set	0.0004514	20	0.008867	42	Genes annotated by the GO term GO:0006839. Transport of substances into out of or within a mitochondrion.	www.broad.mit.e...
Broad MITOCHONDRION_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0004782	47	0.009175	43	Genes annotated by the GO term GO:0007005. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a mitochondrion; includes mitochondrial morphology and distribution and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.	www.broad.mit.e...
Broad MEMBRANE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0005523	133	0.01036	44	Genes annotated by the GO term GO:0016044. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of membranes inside and surrounding the cell.	www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049	View Gene Set	0.000657	304	0.01205	45	Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.	www.broad.mit.e...
Broad M_PHASE	View Gene Set	0.0007383	111	0.01237	46	Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division.	www.broad.mit.e...
Broad MICROTUBULE_BASED_PROCESS	View Gene Set	0.0007497	80	0.01237	46	Genes annotated by the GO term GO:0007017. Any cellular process that depends upon or alters the microtubule cytoskeleton that part of the cytoskeleton comprising microtubules and their associated proteins.	www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE	View Gene Set	0.0007103	148	0.01237	46	Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent.	www.broad.mit.e...
Broad CELL_CYCLE_PHASE	View Gene Set	0.0007259	167	0.01237	46	Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.0007385	285	0.01237	46	Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT	View Gene Set	0.0008019	452	0.01297	51	Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION	View Gene Set	0.0008424	555	0.01337	52	Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad STRESS_ACTIVATED_PROTEIN_KINASE_SIGNALING_PATHWAY	View Gene Set	0.0008651	49	0.01347	53	Genes annotated by the GO term GO:0031098. A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals.	www.broad.mit.e...
Broad REGULATION_OF_PROTEIN_METABOLIC_PROCESS	View Gene Set	0.0009664	171	0.01469	54	Genes annotated by the GO term GO:0051246. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving a protein.	www.broad.mit.e...
Broad REGULATION_OF_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0009793	29	0.01469	54	Genes annotated by the GO term GO:0051493. Any process that modulates the frequency rate or extent of the formation arrangement of constituent parts or disassembly of cytoskeletal structures.	www.broad.mit.e...
Broad MACROMOLECULE_LOCALIZATION	View Gene Set	0.001087	228	0.01574	56	Genes annotated by the GO term GO:0033036. The processes by which a macromolecule is transported to or maintained in a specific location.	www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.001079	10	0.01574	56	Genes annotated by the GO term GO:0051495. Any process that activates or increases the frequency rate or extent of the formation arrangement of constituent parts or disassembly of cytoskeletal structures.	www.broad.mit.e...
Broad NUCLEAR_TRANSPORT	View Gene Set	0.001144	84	0.01599	58	Genes annotated by the GO term GO:0051169. The directed movement of substances into out of or within the nucleus.	www.broad.mit.e...
Broad NUCLEOCYTOPLASMIC_TRANSPORT	View Gene Set	0.001144	83	0.01599	58	Genes annotated by the GO term GO:0006913. The directed movement of molecules between the nucleus and the cytoplasm.	www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS	View Gene Set	0.00121	27	0.01663	60	Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions.	www.broad.mit.e...
Broad PROTEIN_COMPLEX_DISASSEMBLY	View Gene Set	0.001255	14	0.0167	61	Genes annotated by the GO term GO:0043241. The disaggregation of a protein complex into its constituent components. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_DISASSEMBLY	View Gene Set	0.001255	15	0.0167	61	Genes annotated by the GO term GO:0032984. The disaggregation of a macromolecular complex into its constituent components.	www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY	View Gene Set	0.001422	59	0.01863	63	Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.	www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION	View Gene Set	0.001455	55	0.01876	64	Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.	www.broad.mit.e...
Broad PROTEIN_MODIFICATION_PROCESS	View Gene Set	0.001624	610	0.02061	65	Genes annotated by the GO term GO:0006464. The covalent alteration of one or more amino acids occurring in proteins peptides and nascent polypeptides (co-translational post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).	www.broad.mit.e...
Broad JNK_CASCADE	View Gene Set	0.001664	47	0.0208	66	Genes annotated by the GO term GO:0007254. A cascade of protein kinase activities culminating in the phosphorylation and activation of a member of the JUN kinase subfamily of stress-activated protein kinases which in turn are a subfamily of mitogen-activated protein (MAP) kinases that is activated primarily by cytokines and exposure to environmental stress.	www.broad.mit.e...
Broad CELLULAR_PROTEIN_COMPLEX_DISASSEMBLY	View Gene Set	0.001969	13	0.02394	67	Genes annotated by the GO term GO:0043624. The disaggregation of a protein complex into its constituent components occurring at the level of an individual cell. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad PROTEIN_COMPLEX_ASSEMBLY	View Gene Set	0.001973	167	0.02394	67	Genes annotated by the GO term GO:0006461. The aggregation arrangement and bonding together of a set of components to form a protein complex.	www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.002096	35	0.02506	69	Genes annotated by the GO term GO:0051130. Any process that activates or increases the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.	www.broad.mit.e...
Broad INTRACELLULAR_PROTEIN_TRANSPORT	View Gene Set	0.002233	138	0.02595	70	Genes annotated by the GO term GO:0006886. The directed movement of proteins in a cell including the movement of proteins between specific compartments or structures within a cell such as organelles of a eukaryotic cell.	www.broad.mit.e...
Broad RNA_SPLICING	View Gene Set	0.002217	73	0.02595	70	Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.	www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY	View Gene Set	0.002308	14	0.02645	72	Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis.	www.broad.mit.e...
Broad MACROMOLECULE_CATABOLIC_PROCESS	View Gene Set	0.002389	135	0.02665	73	Genes annotated by the GO term GO:0009057. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates.	www.broad.mit.e...
Broad BIOPOLYMER_MODIFICATION	View Gene Set	0.00239	627	0.02665	73	Genes annotated by the GO term GO:0043412. The covalent alteration of one or more monomeric units in a polypeptide polynucleotide polysaccharide or other biological polymer resulting in a change in its properties.	www.broad.mit.e...
Broad PROTEIN_TARGETING	View Gene Set	0.002621	103	0.02883	75	Genes annotated by the GO term GO:0006605. The process of targeting specific proteins to particular membrane-bound subcellular organelles. Usually requires an organelle specific protein sequence motif.	www.broad.mit.e...
Broad REGULATION_OF_PROTEIN_POLYMERIZATION	View Gene Set	0.002708	11	0.02939	76	Genes annotated by the GO term GO:0032271. Any process that modulates the frequency rate or extent of the process of creating protein polymers.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_PROTEIN_METABOLIC_PROCESS	View Gene Set	0.003128	160	0.03352	77	Genes annotated by the GO term GO:0032268. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving a protein occurring at the level of an individual cell.	www.broad.mit.e...
Broad REGULATION_OF_DNA_REPLICATION	View Gene Set	0.0032	19	0.03385	78	Genes annotated by the GO term GO:0006275. Any process that modulates the frequency rate or extent of DNA replication.	www.broad.mit.e...
Broad REGULATION_OF_CELL_MORPHOGENESIS	View Gene Set	0.003442	14	0.03595	79	Genes annotated by the GO term GO:0022604. Any process that modulates the frequency rate or extent of cell morphogenesis. Cell morphogenesis is any process that modulates the size or shape of a cell.	www.broad.mit.e...
Broad COVALENT_CHROMATIN_MODIFICATION	View Gene Set	0.003526	23	0.03637	80	Genes annotated by the GO term GO:0016569. The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups.	www.broad.mit.e...
Broad ESTABLISHMENT_OF_LOCALIZATION	View Gene Set	0.004193	851	0.04271	81	Genes annotated by the GO term GO:0051234. The directed movement of a cell substance or cellular entity such as a protein complex or organelle to a specific location.	www.broad.mit.e...
Broad HISTONE_MODIFICATION	View Gene Set	0.00428	22	0.04306	82	Genes annotated by the GO term GO:0016570. The covalent alteration of one or more amino acid residues within a histone protein.	www.broad.mit.e...
Broad ESTABLISHMENT_OF_PROTEIN_LOCALIZATION	View Gene Set	0.00439	183	0.04361	83	Genes annotated by the GO term GO:0045184. The directed movement of a protein to a specific location.	www.broad.mit.e...
Broad REGULATION_OF_PH	View Gene Set	0.004441	13	0.04361	83	Genes annotated by the GO term GO:0006885. Any process that modulates the internal pH of an organism part of an organism or a cell measured by the concentration of the hydrogen ion.	www.broad.mit.e...
Broad PROTEIN_LOCALIZATION	View Gene Set	0.004782	207	0.04641	85	Genes annotated by the GO term GO:0008104. The processes by which a protein is transported to or maintained in a specific location.	www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.005049	34	0.04684	86	Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.	www.broad.mit.e...
Broad CELLULAR_PROTEIN_COMPLEX_ASSEMBLY	View Gene Set	0.005053	33	0.04684	86	Genes annotated by the GO term GO:0043623. The aggregation arrangement and bonding together of a set of components to form a protein complex occurring at the level of an individual cell.	www.broad.mit.e...
Broad POST_TRANSLATIONAL_PROTEIN_MODIFICATION	View Gene Set	0.004947	462	0.04684	86	Genes annotated by the GO term GO:0043687. The covalent alteration of one or more amino acids occurring in a protein after the protein has been completely translated and released from the ribosome.	www.broad.mit.e...
Broad TRANSPORT	View Gene Set	0.004977	777	0.04684	86	Genes annotated by the GO term GO:0006810. The directed movement of substances (such as macromolecules small molecules ions) into out of within or between cells.	www.broad.mit.e...
Broad PROTEIN_AMINO_ACID_PHOSPHORYLATION	View Gene Set	0.005231	267	0.04795	90	Genes annotated by the GO term GO:0006468. The process of introducing a phosphate group on to a protein.	www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEUS	View Gene Set	5.136e-15	1353	1.197e-12	1	Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent.	www.broad.mit.e...
Broad ORGANELLE_PART	View Gene Set	1.463e-11	1149	1.136e-09	2	Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART	View Gene Set	1.029e-11	1144	1.136e-09	2	Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX	View Gene Set	1.125e-10	914	6.554e-09	4	Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together.	www.broad.mit.e...
Broad NUCLEAR_PART	View Gene Set	4.601e-10	543	2.144e-08	5	Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	www.broad.mit.e...
Broad PROTEIN_COMPLEX	View Gene Set	7.664e-09	799	2.976e-07	6	Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad CHROMOSOMAL_PART	View Gene Set	2.866e-07	95	9.539e-06	7	Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad CHROMOSOME	View Gene Set	8.662e-07	122	2.523e-05	8	Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad NUCLEAR_LUMEN	View Gene Set	3.262e-06	365	8.445e-05	9	Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane.	www.broad.mit.e...
Broad NUCLEOPLASM_PART	View Gene Set	4.279e-06	202	9.969e-05	10	Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad ENVELOPE	View Gene Set	5.992e-06	165	0.0001163	11	Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers.	www.broad.mit.e...
Broad ORGANELLE_ENVELOPE	View Gene Set	5.992e-06	165	0.0001163	11	Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes.	www.broad.mit.e...
Broad NUCLEOPLASM	View Gene Set	1.769e-05	266	0.0003171	13	Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	2.439e-05	613	0.0003789	14	Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	2.439e-05	613	0.0003789	14	Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad ORGANELLE_LUMEN	View Gene Set	3.309e-05	434	0.0004535	16	Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen.	www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN	View Gene Set	3.309e-05	434	0.0004535	16	Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE	View Gene Set	3.787e-05	48	0.0004902	18	Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.	www.broad.mit.e...
Broad ORGANELLE_MEMBRANE	View Gene Set	9.794e-05	290	0.001201	19	Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART	View Gene Set	0.0001472	40	0.001715	20	Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells.	www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION	View Gene Set	0.0004109	31	0.004559	21	Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome.	www.broad.mit.e...
Broad MITOCHONDRIAL_OUTER_MEMBRANE	View Gene Set	0.0004683	18	0.004744	22	Genes annotated by the GO term GO:0005741. The outer i.e. cytoplasm-facing lipid bilayer of the mitochondrial envelope.	www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE	View Gene Set	0.0004561	85	0.004744	22	Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.	www.broad.mit.e...
Broad CHROMATIN_REMODELING_COMPLEX	View Gene Set	0.0007179	17	0.006006	24	Genes annotated by the GO term GO:0016585. Any complex that mediates dynamic changes in eukaryotic chromatin.	www.broad.mit.e...
Broad PORE_COMPLEX	View Gene Set	0.0007218	34	0.006006	24	Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids.	www.broad.mit.e...
Broad NUCLEAR_ENVELOPE	View Gene Set	0.000666	71	0.006006	24	Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space).	www.broad.mit.e...
Broad NUCLEAR_PORE	View Gene Set	0.0006587	29	0.006006	24	Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined.	www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE	View Gene Set	0.0006867	95	0.006006	24	Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.	www.broad.mit.e...
Broad ORGANELLE_OUTER_MEMBRANE	View Gene Set	0.001085	24	0.008714	29	Genes annotated by the GO term GO:0031968. The outer i.e. cytoplasm-facing lipid bilayer of an organelle envelope.	www.broad.mit.e...
Broad REPLICATION_FORK	View Gene Set	0.001448	18	0.01125	30	Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	0.002062	129	0.0155	31	Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules.	www.broad.mit.e...
Broad MITOCHONDRIAL_PART	View Gene Set	0.002473	140	0.018	32	Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	www.broad.mit.e...
Broad OUTER_MEMBRANE	View Gene Set	0.002657	25	0.01876	33	Genes annotated by the GO term GO:0019867. The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.	www.broad.mit.e...
Broad OLIGOSACCHARYL_TRANSFERASE_COMPLEX	View Gene Set	0.003266	9	0.02166	34	Genes annotated by the GO term GO:0008250. A multisubunit protein complex in the endoplasmic reticulum membrane of eukaryotes that transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins; includes at least nine different subunits at least in yeast.	www.broad.mit.e...
Broad CHROMATIN	View Gene Set	0.003346	35	0.02166	34	Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME	View Gene Set	0.003337	53	0.02166	34	Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_COMPLEX	View Gene Set	0.00351	84	0.0221	37	Genes annotated by the GO term GO:0005667. Any complex distinct from RNA polymerase including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences and regulating transcription.	www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE	View Gene Set	0.003628	74	0.02224	38	Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites.	www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM	View Gene Set	0.003872	213	0.02313	39	Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.	www.broad.mit.e...
Broad MITOCHONDRION	View Gene Set	0.007898	335	0.04601	40	Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	www.broad.mit.e...
Broad EARLY_ENDOSOME	View Gene Set	0.008933	18	0.04975	41	Genes annotated by the GO term GO:0005769. Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART	View Gene Set	0.008967	33	0.04975	41	Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS	View Gene Set	4.008e-06	414	0.001587	1	Genes annotated by the GO term GO:0016772. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).	www.broad.mit.e...
Broad KINASE_ACTIVITY	View Gene Set	7.893e-05	359	0.01563	2	Genes annotated by the GO term GO:0016301. Catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule.	www.broad.mit.e...
Broad PHOSPHOTRANSFERASE_ACTIVITY_ALCOHOL_GROUP_AS_ACCEPTOR	View Gene Set	0.0001257	326	0.01659	3	Genes annotated by the GO term GO:0016773. Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).	www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS	View Gene Set	0.0002679	68	0.01957	4	Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate.	www.broad.mit.e...
Broad PROTEIN_KINASE_ACTIVITY	View Gene Set	0.0002805	278	0.01957	4	Genes annotated by the GO term GO:0004672. Catalysis of the phosphorylation of an amino acid residue in a protein usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.	www.broad.mit.e...
Broad PROTEIN_SERINE_THREONINE_KINASE_ACTIVITY	View Gene Set	0.0002966	200	0.01957	4	Genes annotated by the GO term GO:0004674. Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate.	www.broad.mit.e...
Broad LIGASE_ACTIVITY	View Gene Set	0.0004956	97	0.02804	7	Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6.	www.broad.mit.e...
Broad GTPASE_BINDING	View Gene Set	0.0007124	35	0.03187	8	Genes annotated by the GO term GO:0051020. Interacting selectively with a GTPase any enzyme that catalyzes the hydrolysis of GTP.	www.broad.mit.e...
Broad CHROMATIN_BINDING	View Gene Set	0.0007244	32	0.03187	8	Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
PMID 15302935	View Gene Set	2.484e-19	773	6.227e-16	1	Large-scale characterization of HeLa cell nuclear phosphoproteins.	www.ncbi.nlm.ni...
PMID 17643375	View Gene Set	3.394e-13	391	4.254e-10	2	Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.	www.ncbi.nlm.ni...
PMID 15635413	View Gene Set	8.828e-12	421	7.377e-09	3	Nucleolar proteome dynamics.	www.ncbi.nlm.ni...
PMID 16964243	View Gene Set	3.512e-09	504	2.201e-06	4	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	www.ncbi.nlm.ni...
PMID 15592455	View Gene Set	1.445e-07	317	7.246e-05	5	Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.	www.ncbi.nlm.ni...
PMID 11080476	View Gene Set	1.786e-07	87	7.464e-05	6	Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones.	www.ncbi.nlm.ni...
PMID 14657027	View Gene Set	3.486e-07	74	0.0001093	7	Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter.	www.ncbi.nlm.ni...
PMID 9566873	View Gene Set	3.252e-07	74	0.0001093	7	Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter.	www.ncbi.nlm.ni...
PMID 11689053	View Gene Set	4.838e-07	70	0.0001103	9	Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA.	www.ncbi.nlm.ni...
PMID 15057824	View Gene Set	4.457e-07	274	0.0001103	9	The DNA sequence and biology of human chromosome 19.	www.ncbi.nlm.ni...
PMID 20508983	View Gene Set	3.994e-07	102	0.0001103	9	Centrosome-related genes genetic variation and risk of breast cancer.	www.ncbi.nlm.ni...
PMID 16565220	View Gene Set	5.425e-07	210	0.0001133	12	Phosphoproteome analysis of the human mitotic spindle.	www.ncbi.nlm.ni...
PMID 20085707	View Gene Set	6.926e-07	42	0.0001336	13	Aire's partners in the molecular control of immunological tolerance.	www.ncbi.nlm.ni...
PMID 9439656	View Gene Set	1.052e-06	55	0.0001883	14	The human histone gene cluster at the D6S105 locus.	www.ncbi.nlm.ni...
PMID 12226669	View Gene Set	1.365e-06	108	0.0002196	15	Comprehensive proteomic analysis of the human spliceosome.	www.ncbi.nlm.ni...
PMID 12665801	View Gene Set	1.402e-06	261	0.0002196	15	Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.	www.ncbi.nlm.ni...
PMID 12408966	View Gene Set	5.612e-06	76	0.0008275	17	The human and mouse replication-dependent histone genes.	www.ncbi.nlm.ni...
PMID 12791985	View Gene Set	6.816e-06	37	0.0009493	18	Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes.	www.ncbi.nlm.ni...
PMID 11790298	View Gene Set	7.675e-06	208	0.001013	19	Directed proteomic analysis of the human nucleolus.	www.ncbi.nlm.ni...
PMID 17192257	View Gene Set	1.983e-05	78	0.002368	20	Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry.	www.ncbi.nlm.ni...
PMID 17220478	View Gene Set	1.975e-05	63	0.002368	20	Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells.	www.ncbi.nlm.ni...
PMID 15782174	View Gene Set	3.451e-05	31	0.003933	22	Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.	www.ncbi.nlm.ni...
PMID 15032605	View Gene Set	4.905e-05	13	0.005347	23	Computational and experimental studies on human misshapen/NIK-related kinase MINK-1.	www.ncbi.nlm.ni...
PMID 16713569	View Gene Set	6.415e-05	570	0.006701	24	A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.	www.ncbi.nlm.ni...
PMID 20522537	View Gene Set	8.7e-05	73	0.008724	25	Variation within DNA repair pathway genes and risk of multiple sclerosis.	www.ncbi.nlm.ni...
PMID 10078207	View Gene Set	0.0001049	10	0.01012	26	Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits.	www.ncbi.nlm.ni...
PMID 10591208	View Gene Set	0.0001309	299	0.01216	27	The DNA sequence of human chromosome 22.	www.ncbi.nlm.ni...
PMID 11078522	View Gene Set	0.0001547	12	0.01385	28	The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes.	www.ncbi.nlm.ni...
PMID 11734557	View Gene Set	0.000186	12	0.01608	29	SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones.	www.ncbi.nlm.ni...
PMID 12665591	View Gene Set	0.0001937	10	0.01619	30	Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner.	www.ncbi.nlm.ni...
PMID 17081065	View Gene Set	0.0002127	80	0.0172	31	Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes.	www.ncbi.nlm.ni...
PMID 16319397	View Gene Set	0.0002412	20	0.01746	32	Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry.	www.ncbi.nlm.ni...
PMID 16622420	View Gene Set	0.0002363	14	0.01746	32	The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres.	www.ncbi.nlm.ni...
PMID 16729043	View Gene Set	0.0002437	18	0.01746	32	Phosphotyrosine interactome of the ErbB-receptor kinase family.	www.ncbi.nlm.ni...
PMID 19237606	View Gene Set	0.0002414	84	0.01746	32	Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk.	www.ncbi.nlm.ni...
PMID 15951569	View Gene Set	0.0002546	75	0.01773	36	Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules.	www.ncbi.nlm.ni...
PMID 16622419	View Gene Set	0.0002629	16	0.01781	37	The human CENP-A centromeric nucleosome-associated complex.	www.ncbi.nlm.ni...
PMID 15461802	View Gene Set	0.0002846	293	0.01877	38	A genome annotation-driven approach to cloning the human ORFeome.	www.ncbi.nlm.ni...
PMID 16713563	View Gene Set	0.0003103	19	0.01995	39	Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.	www.ncbi.nlm.ni...
PMID 8274451	View Gene Set	0.0003339	16	0.02093	40	Identification of 21 novel human protein kinases including 3 members of a family related to the cell cycle regulator nimA of Aspergillus nidulans.	www.ncbi.nlm.ni...
PMID 17289661	View Gene Set	0.0003476	35	0.02126	41	Molecular composition of IMP1 ribonucleoprotein granules.	www.ncbi.nlm.ni...
PMID 15009096	View Gene Set	0.0003845	39	0.02242	42	Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase.	www.ncbi.nlm.ni...
PMID 9472028	View Gene Set	0.0003814	12	0.02242	42	SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.	www.ncbi.nlm.ni...
PMID 10064132	View Gene Set	0.000405	14	0.02279	44	The human H2A and H2B histone gene complement.	www.ncbi.nlm.ni...
PMID 11984006	View Gene Set	0.0004163	27	0.02279	44	The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins.	www.ncbi.nlm.ni...
PMID 15231748	View Gene Set	0.0004182	519	0.02279	44	Functional proteomics mapping of a human signaling pathway.	www.ncbi.nlm.ni...
PMID 15952740	View Gene Set	0.0004504	58	0.02403	47	Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry.	www.ncbi.nlm.ni...
PMID 9119399	View Gene Set	0.0005609	35	0.02929	48	Human histone gene organization: nonregular arrangement within a large cluster.	www.ncbi.nlm.ni...
PMID 14760703	View Gene Set	0.0005875	40	0.02946	49	Proteomic identification of brain proteins that interact with dynein light chain LC8.	www.ncbi.nlm.ni...
PMID 16627869	View Gene Set	0.0005793	17	0.02946	49	Quantitative proteomic analysis of post-translational modifications of human histones.	www.ncbi.nlm.ni...
PMID 9710619	View Gene Set	0.0006135	16	0.03016	51	A human RNA polymerase II complex containing factors that modify chromatin structure.	www.ncbi.nlm.ni...
PMID 10608806	View Gene Set	0.0006909	25	0.03167	52	Substrate specificities and identification of putative substrates of ATM kinase family members.	www.ncbi.nlm.ni...
PMID 11520933	View Gene Set	0.0006679	26	0.03167	52	Nerve growth factor signaling neuroprotection and neural repair.	www.ncbi.nlm.ni...
PMID 16236267	View Gene Set	0.0006948	77	0.03167	52	Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress.	www.ncbi.nlm.ni...
PMID 8895581	View Gene Set	0.0006702	12	0.03167	52	Purification and biochemical heterogeneity of the mammalian SWI-SNF complex.	www.ncbi.nlm.ni...
PMID 12837248	View Gene Set	0.000718	22	0.03214	56	The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome.	www.ncbi.nlm.ni...
PMID 14559993	View Gene Set	0.0008262	51	0.03601	57	Regulation of alternative splicing by SRrp86 and its interacting proteins.	www.ncbi.nlm.ni...
PMID 17215244	View Gene Set	0.0008332	31	0.03601	57	Purification and identification of G protein-coupled receptor protein complexes under native conditions.	www.ncbi.nlm.ni...
PMID 16283522	View Gene Set	0.0008534	18	0.03615	59	Inhibition of core histones acetylation by carcinogenic nickel(II).	www.ncbi.nlm.ni...
PMID 19165527	View Gene Set	0.0008652	84	0.03615	59	Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia.	www.ncbi.nlm.ni...
PMID 17567985	View Gene Set	0.000894	25	0.03674	61	Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes.	www.ncbi.nlm.ni...
PMID 12446789	View Gene Set	0.0009999	12	0.04043	62	Grit a GTPase-activating protein for the Rho family regulates neurite extension through association with the TrkA receptor and N-Shc and CrkL/Crk adapter molecules.	www.ncbi.nlm.ni...
PMID 18162579	View Gene Set	0.001182	22	0.04656	63	Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1.	www.ncbi.nlm.ni...
PMID 8619474	View Gene Set	0.001207	534	0.04656	63	A "double adaptor" method for improved shotgun library construction.	www.ncbi.nlm.ni...
PMID 9110174	View Gene Set	0.001193	528	0.04656	63	Large-scale concatenation cDNA sequencing.	www.ncbi.nlm.ni...
PMID 11839798	View Gene Set	0.001235	10	0.0469	66	BAF53 forms distinct nuclear complexes and functions as a critical c-Myc-interacting nuclear cofactor for oncogenic transformation.	www.ncbi.nlm.ni...
PMID 15324660	View Gene Set	0.00129	242	0.04828	67	Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization.	www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null chr11_60-65Mb	View Gene Set	8.758e-06	104	0.009756	1	Genomic tile: chr11 ; 60000001-65000001 Mb	genome.ucsc.edu...
Null chr19_0-5Mb	View Gene Set	2.457e-05	105	0.01369	2	Genomic tile: chr19 ; 1-5000001 Mb	genome.ucsc.edu...
Null chr9_127.5-132.5Mb	View Gene Set	5.349e-05	38	0.01986	3	Genomic tile: chr9 ; 127500001-132500001 Mb	genome.ucsc.edu...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null PS00357	View Gene Set	5.106e-05	19	0.03753	1	HISTONE_H2B	expasy.org/pros...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.MAPK3	View Gene Set	0.0001579	9	0.02983	1	Protein-protein-interaction for MAPK3	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	6.272e-11	236	1.441e-07	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	9.908e-07	35	0.001037	2	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	1.354e-06	147	0.001037	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.KPNA2	View Gene Set	1.037e-05	14	0.005955	4	Protein-protein-interaction for KPNA2	www.ncbi.nlm.ni...
Null ppi.UBE2H	View Gene Set	1.523e-05	8	0.006998	5	Protein-protein-interaction for UBE2H	www.ncbi.nlm.ni...
Null ppi.MAPK14	View Gene Set	4.578e-05	8	0.01502	6	Protein-protein-interaction for MAPK14	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	4.547e-05	38	0.01502	6	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	7.282e-05	53	0.01964	8	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	7.697e-05	40	0.01964	8	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.ZRANB1	View Gene Set	9.488e-05	18	0.01995	10	Protein-protein-interaction for ZRANB1	www.ncbi.nlm.ni...
Null ppi.MKNK1	View Gene Set	9.552e-05	12	0.01995	10	Protein-protein-interaction for MKNK1	www.ncbi.nlm.ni...
Null ppi.CHD1L	View Gene Set	0.0001153	15	0.02207	12	Protein-protein-interaction for CHD1L	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	0.0001356	11	0.02395	13	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.ARFIP2	View Gene Set	0.0002036	9	0.02685	14	Protein-protein-interaction for ARFIP2	www.ncbi.nlm.ni...
Null ppi.PPP1CA	View Gene Set	0.0002138	12	0.02685	14	Protein-protein-interaction for PPP1CA	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	0.0001949	11	0.02685	14	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.SPTAN1	View Gene Set	0.0001808	19	0.02685	14	Protein-protein-interaction for SPTAN1	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	0.0002113	27	0.02685	14	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	0.0002221	28	0.02685	14	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0002716	11	0.02798	20	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.RCHY1	View Gene Set	0.000283	6	0.02798	20	Protein-protein-interaction for RCHY1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.0002934	12	0.02798	20	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.GEMIN4	View Gene Set	0.0002963	21	0.02798	20	Protein-protein-interaction for GEMIN4	www.ncbi.nlm.ni...
Null ppi.MAPK3	View Gene Set	0.0002852	22	0.02798	20	Protein-protein-interaction for MAPK3	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0003045	17	0.02798	20	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.WWOX	View Gene Set	0.0003449	19	0.02953	26	Protein-protein-interaction for WWOX	www.ncbi.nlm.ni...
Null ppi.CBX8	View Gene Set	0.0003471	12	0.02953	26	Protein-protein-interaction for CBX8	www.ncbi.nlm.ni...
Null ppi.CARM1	View Gene Set	0.0003949	32	0.03185	28	Protein-protein-interaction for CARM1	www.ncbi.nlm.ni...
Null ppi.WDR48	View Gene Set	0.0004021	52	0.03185	28	Protein-protein-interaction for WDR48	www.ncbi.nlm.ni...
Null ppi.USP22	View Gene Set	0.0004439	18	0.03399	30	Protein-protein-interaction for USP22	www.ncbi.nlm.ni...
Null ppi.UBE2I	View Gene Set	0.000493	62	0.03653	31	Protein-protein-interaction for UBE2I	www.ncbi.nlm.ni...
Null ppi.FXR2	View Gene Set	0.0005096	20	0.03658	32	Protein-protein-interaction for FXR2	www.ncbi.nlm.ni...
Null ppi.TAF5L	View Gene Set	0.0005573	10	0.03879	33	Protein-protein-interaction for TAF5L	www.ncbi.nlm.ni...
Null ppi.CDK2	View Gene Set	0.0006128	12	0.03885	34	Protein-protein-interaction for CDK2	www.ncbi.nlm.ni...
Null ppi.CIB1	View Gene Set	0.001025	10	0.03885	34	Protein-protein-interaction for CIB1	www.ncbi.nlm.ni...
Null ppi.CAMKK2	View Gene Set	0.001013	15	0.03885	34	Protein-protein-interaction for CAMKK2	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	0.0008479	38	0.03885	34	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	0.0006778	35	0.03885	34	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.BNIPL	View Gene Set	0.0006873	9	0.03885	34	Protein-protein-interaction for BNIPL	www.ncbi.nlm.ni...
Null ppi.CNOT1	View Gene Set	0.0008655	6	0.03885	34	Protein-protein-interaction for CNOT1	www.ncbi.nlm.ni...
Null ppi.BRD4	View Gene Set	0.0005793	18	0.03885	34	Protein-protein-interaction for BRD4	www.ncbi.nlm.ni...
Null ppi.GIGYF2	View Gene Set	0.001048	17	0.03885	34	Protein-protein-interaction for GIGYF2	www.ncbi.nlm.ni...
Null ppi.UBE2T	View Gene Set	0.0009524	7	0.03885	34	Protein-protein-interaction for UBE2T	www.ncbi.nlm.ni...
Null ppi.FHOD1	View Gene Set	0.0008629	11	0.03885	34	Protein-protein-interaction for FHOD1	www.ncbi.nlm.ni...
Null ppi.MYBL2	View Gene Set	0.0009828	10	0.03885	34	Protein-protein-interaction for MYBL2	www.ncbi.nlm.ni...
Null ppi.YBX1	View Gene Set	0.0005965	7	0.03885	34	Protein-protein-interaction for YBX1	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.001045	9	0.03885	34	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.ANAPC5	View Gene Set	0.0008392	12	0.03885	34	Protein-protein-interaction for ANAPC5	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	0.001049	38	0.03885	34	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.ARID1B	View Gene Set	0.0009886	12	0.03885	34	Protein-protein-interaction for ARID1B	www.ncbi.nlm.ni...
Null ppi.TRIB3	View Gene Set	0.001041	24	0.03885	34	Protein-protein-interaction for TRIB3	www.ncbi.nlm.ni...
Null ppi.AKTIP	View Gene Set	0.0008791	21	0.03885	34	Protein-protein-interaction for AKTIP	www.ncbi.nlm.ni...
Null ppi.SMARCD1	View Gene Set	0.001024	17	0.03885	34	Protein-protein-interaction for SMARCD1	www.ncbi.nlm.ni...
Null ppi.TAF12	View Gene Set	0.0006344	10	0.03885	34	Protein-protein-interaction for TAF12	www.ncbi.nlm.ni...
Null ppi.TAT	View Gene Set	0.0007003	11	0.03885	34	Protein-protein-interaction for TAT	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	0.0009445	168	0.03885	34	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.USF1	View Gene Set	0.0009514	14	0.03885	34	Protein-protein-interaction for USF1	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	0.0007416	37	0.03885	34	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.CASP2	View Gene Set	0.0007469	5	0.03885	34	Protein-protein-interaction for CASP2	www.ncbi.nlm.ni...
Null ppi.HDAC10	View Gene Set	0.0009563	11	0.03885	34	Protein-protein-interaction for HDAC10	www.ncbi.nlm.ni...
Null ppi.GTF3C3	View Gene Set	0.0006525	11	0.03885	34	Protein-protein-interaction for GTF3C3	www.ncbi.nlm.ni...
Null ppi.NUP153	View Gene Set	0.0009266	11	0.03885	34	Protein-protein-interaction for NUP153	www.ncbi.nlm.ni...
Null ppi.FOXM1	View Gene Set	0.001206	8	0.04399	63	Protein-protein-interaction for FOXM1	www.ncbi.nlm.ni...
Null ppi.64196	View Gene Set	0.001309	6	0.04697	64	Protein-protein-interaction for 64196	www.ncbi.nlm.ni...
Null ppi.BRD7	View Gene Set	0.001357	20	0.04797	65	Protein-protein-interaction for BRD7	www.ncbi.nlm.ni...
Null ppi.ANAPC7	View Gene Set	0.0014	12	0.04799	66	Protein-protein-interaction for ANAPC7	www.ncbi.nlm.ni...
Null ppi.GTF3C5	View Gene Set	0.001398	8	0.04799	66	Protein-protein-interaction for GTF3C5	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.NDRG1	View Gene Set	2.208e-05	58	0.01747	1	Protein-protein-interaction for NDRG1	www.ncbi.nlm.ni...
Null ppi.MINK1	View Gene Set	1.911e-05	13	0.01747	1	Protein-protein-interaction for MINK1	www.ncbi.nlm.ni...
Null ppi.RFX1	View Gene Set	2.045e-05	11	0.01747	1	Protein-protein-interaction for RFX1	www.ncbi.nlm.ni...
Null ppi.CNOT1	View Gene Set	6.104e-05	9	0.03623	4	Protein-protein-interaction for CNOT1	www.ncbi.nlm.ni...
Null ppi.SORBS1	View Gene Set	0.0002299	16	0.04101	5	Protein-protein-interaction for SORBS1	www.ncbi.nlm.ni...
Null ppi.WWP2	View Gene Set	0.0001176	18	0.04101	5	Protein-protein-interaction for WWP2	www.ncbi.nlm.ni...
Null ppi.NCBP2	View Gene Set	0.0001431	6	0.04101	5	Protein-protein-interaction for NCBP2	www.ncbi.nlm.ni...
Null ppi.PACSIN1	View Gene Set	0.0001066	9	0.04101	5	Protein-protein-interaction for PACSIN1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.0002136	11	0.04101	5	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	0.0002493	18	0.04101	5	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.RPS6KB1	View Gene Set	0.0002332	21	0.04101	5	Protein-protein-interaction for RPS6KB1	www.ncbi.nlm.ni...
Null ppi.YWHAG	View Gene Set	0.0002166	106	0.04101	5	Protein-protein-interaction for YWHAG	www.ncbi.nlm.ni...
Null ppi.SORBS2	View Gene Set	0.0002014	13	0.04101	5	Protein-protein-interaction for SORBS2	www.ncbi.nlm.ni...
Null ppi.MAPKAPK5	View Gene Set	0.0002591	19	0.04101	5	Protein-protein-interaction for MAPKAPK5	www.ncbi.nlm.ni...
Null ppi.CNOT8	View Gene Set	0.0001902	6	0.04101	5	Protein-protein-interaction for CNOT8	www.ncbi.nlm.ni...
Null ppi.PPP1CA	View Gene Set	0.0003019	19	0.04479	16	Protein-protein-interaction for PPP1CA	www.ncbi.nlm.ni...
Null ppi.EFS	View Gene Set	0.0004148	7	0.04573	17	Protein-protein-interaction for EFS	www.ncbi.nlm.ni...
Null ppi.PAK4	View Gene Set	0.0003624	10	0.04573	17	Protein-protein-interaction for PAK4	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	0.0005008	20	0.04573	17	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0004931	8	0.04573	17	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.GGA2	View Gene Set	0.0004725	14	0.04573	17	Protein-protein-interaction for GGA2	www.ncbi.nlm.ni...
Null ppi.KPNA2	View Gene Set	0.0004111	15	0.04573	17	Protein-protein-interaction for KPNA2	www.ncbi.nlm.ni...
Null ppi.U2AF1	View Gene Set	0.0003443	7	0.04573	17	Protein-protein-interaction for U2AF1	www.ncbi.nlm.ni...
Null ppi.CPSF7	View Gene Set	0.0004895	10	0.04573	17	Protein-protein-interaction for CPSF7	www.ncbi.nlm.ni...
Null ppi.ASAP2	View Gene Set	0.0004277	8	0.04573	17	Protein-protein-interaction for ASAP2	www.ncbi.nlm.ni...
Null ppi.CDK1	View Gene Set	0.0004044	14	0.04573	17	Protein-protein-interaction for CDK1	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	5.747e-10	251	2.066e-06	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	7.786e-07	39	0.001399	2	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	1.354e-06	147	0.001623	3	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	3.833e-06	96	0.002857	4	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.UBE2H	View Gene Set	3.974e-06	9	0.002857	4	Protein-protein-interaction for UBE2H	www.ncbi.nlm.ni...
Null ppi.KPNA2	View Gene Set	7.608e-06	21	0.004557	6	Protein-protein-interaction for KPNA2	www.ncbi.nlm.ni...
Null ppi.MINK1	View Gene Set	1.911e-05	13	0.009812	7	Protein-protein-interaction for MINK1	www.ncbi.nlm.ni...
Null ppi.NDRG1	View Gene Set	2.208e-05	58	0.009918	8	Protein-protein-interaction for NDRG1	www.ncbi.nlm.ni...
Null ppi.MAPK14	View Gene Set	3.982e-05	11	0.01022	9	Protein-protein-interaction for MAPK14	www.ncbi.nlm.ni...
Null ppi.CNOT1	View Gene Set	3.525e-05	11	0.01022	9	Protein-protein-interaction for CNOT1	www.ncbi.nlm.ni...
Null ppi.RCHY1	View Gene Set	3.187e-05	8	0.01022	9	Protein-protein-interaction for RCHY1	www.ncbi.nlm.ni...
Null ppi.WWOX	View Gene Set	3.971e-05	26	0.01022	9	Protein-protein-interaction for WWOX	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	3.44e-05	20	0.01022	9	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.SPTAN1	View Gene Set	3.853e-05	32	0.01022	9	Protein-protein-interaction for SPTAN1	www.ncbi.nlm.ni...
Null ppi.PPP1CA	View Gene Set	4.661e-05	27	0.01117	15	Protein-protein-interaction for PPP1CA	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	6.31e-05	41	0.01334	16	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.CDK1	View Gene Set	5.941e-05	16	0.01334	16	Protein-protein-interaction for CDK1	www.ncbi.nlm.ni...
Null ppi.ASAP2	View Gene Set	7.553e-05	11	0.01508	18	Protein-protein-interaction for ASAP2	www.ncbi.nlm.ni...
Null ppi.ZRANB1	View Gene Set	9.488e-05	18	0.01749	19	Protein-protein-interaction for ZRANB1	www.ncbi.nlm.ni...
Null ppi.CNOT8	View Gene Set	9.733e-05	7	0.01749	19	Protein-protein-interaction for CNOT8	www.ncbi.nlm.ni...
Null ppi.SORBS1	View Gene Set	0.0001054	19	0.01805	21	Protein-protein-interaction for SORBS1	www.ncbi.nlm.ni...
Null ppi.CDK2	View Gene Set	0.0001201	15	0.01876	22	Protein-protein-interaction for CDK2	www.ncbi.nlm.ni...
Null ppi.CHD1L	View Gene Set	0.0001153	15	0.01876	22	Protein-protein-interaction for CHD1L	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	0.0001341	31	0.01949	24	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	0.0001356	11	0.01949	24	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.NCBP2	View Gene Set	0.0001431	6	0.0196	26	Protein-protein-interaction for NCBP2	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.0001473	15	0.0196	26	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.0001572	11	0.02017	28	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.RFX1	View Gene Set	0.0002591	12	0.03009	29	Protein-protein-interaction for RFX1	www.ncbi.nlm.ni...
Null ppi.MAPKAPK3	View Gene Set	0.000255	9	0.03009	29	Protein-protein-interaction for MAPKAPK3	www.ncbi.nlm.ni...
Null ppi.MKNK1	View Gene Set	0.0002596	15	0.03009	29	Protein-protein-interaction for MKNK1	www.ncbi.nlm.ni...
Null ppi.CARM1	View Gene Set	0.0003173	35	0.03018	32	Protein-protein-interaction for CARM1	www.ncbi.nlm.ni...
Null ppi.E2F3	View Gene Set	0.0003189	8	0.03018	32	Protein-protein-interaction for E2F3	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0002716	11	0.03018	32	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.GIGYF2	View Gene Set	0.0003415	19	0.03018	32	Protein-protein-interaction for GIGYF2	www.ncbi.nlm.ni...
Null ppi.PCBP2	View Gene Set	0.0002871	8	0.03018	32	Protein-protein-interaction for PCBP2	www.ncbi.nlm.ni...
Null ppi.MARCH5	View Gene Set	0.0002851	7	0.03018	32	Protein-protein-interaction for MARCH5	www.ncbi.nlm.ni...
Null ppi.CBX8	View Gene Set	0.000335	13	0.03018	32	Protein-protein-interaction for CBX8	www.ncbi.nlm.ni...
Null ppi.STAU1	View Gene Set	0.0003398	21	0.03018	32	Protein-protein-interaction for STAU1	www.ncbi.nlm.ni...
Null ppi.U2AF1	View Gene Set	0.0003443	7	0.03018	32	Protein-protein-interaction for U2AF1	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0003045	17	0.03018	32	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.SSH1	View Gene Set	0.0003833	9	0.0313	42	Protein-protein-interaction for SSH1	www.ncbi.nlm.ni...
Null ppi.USP7	View Gene Set	0.0003825	32	0.0313	42	Protein-protein-interaction for USP7	www.ncbi.nlm.ni...
Null ppi.AP3B1	View Gene Set	0.0003755	12	0.0313	42	Protein-protein-interaction for AP3B1	www.ncbi.nlm.ni...
Null ppi.WDR48	View Gene Set	0.0004021	52	0.03175	45	Protein-protein-interaction for WDR48	www.ncbi.nlm.ni...
Null ppi.UBE2Z	View Gene Set	0.0004064	19	0.03175	45	Protein-protein-interaction for UBE2Z	www.ncbi.nlm.ni...
Null ppi.ANAPC5	View Gene Set	0.0004298	13	0.03287	47	Protein-protein-interaction for ANAPC5	www.ncbi.nlm.ni...
Null ppi.USP22	View Gene Set	0.0004439	18	0.03324	48	Protein-protein-interaction for USP22	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	0.0004676	42	0.0343	49	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.ARID1B	View Gene Set	0.0005101	13	0.03641	50	Protein-protein-interaction for ARID1B	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	0.0005166	52	0.03641	50	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.TAF5L	View Gene Set	0.0005573	10	0.03779	52	Protein-protein-interaction for TAF5L	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	0.0005573	29	0.03779	52	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.WWP2	View Gene Set	0.000571	21	0.038	54	Protein-protein-interaction for WWP2	www.ncbi.nlm.ni...
Null ppi.PLD1	View Gene Set	0.0006193	13	0.03975	55	Protein-protein-interaction for PLD1	www.ncbi.nlm.ni...
Null ppi.SORBS2	View Gene Set	0.0006084	15	0.03975	55	Protein-protein-interaction for SORBS2	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	0.0006778	35	0.03984	57	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.BNIPL	View Gene Set	0.0006873	9	0.03984	57	Protein-protein-interaction for BNIPL	www.ncbi.nlm.ni...
Null ppi.PDK2	View Gene Set	0.0006776	6	0.03984	57	Protein-protein-interaction for PDK2	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	0.0006444	220	0.03984	57	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.USF1	View Gene Set	0.0006727	17	0.03984	57	Protein-protein-interaction for USF1	www.ncbi.nlm.ni...
Null ppi.GTF3C3	View Gene Set	0.0006821	12	0.03984	57	Protein-protein-interaction for GTF3C3	www.ncbi.nlm.ni...
Null ppi.TAT	View Gene Set	0.0007003	11	0.03995	63	Protein-protein-interaction for TAT	www.ncbi.nlm.ni...
Null ppi.ARHGAP26	View Gene Set	0.0007294	6	0.04083	64	Protein-protein-interaction for ARHGAP26	www.ncbi.nlm.ni...
Null ppi.NCF1C	View Gene Set	0.0007385	7	0.04083	64	Protein-protein-interaction for NCF1C	www.ncbi.nlm.ni...
Null ppi.SH3BP1	View Gene Set	0.0008162	8	0.04444	66	Protein-protein-interaction for SH3BP1	www.ncbi.nlm.ni...
Null ppi.BRD4	View Gene Set	0.0008502	19	0.04561	67	Protein-protein-interaction for BRD4	www.ncbi.nlm.ni...
Null ppi.RAB4A	View Gene Set	0.000864	8	0.04567	68	Protein-protein-interaction for RAB4A	www.ncbi.nlm.ni...
Null ppi.UBE2T	View Gene Set	0.0009524	7	0.04672	69	Protein-protein-interaction for UBE2T	www.ncbi.nlm.ni...
Null ppi.MCM3	View Gene Set	0.0009567	6	0.04672	69	Protein-protein-interaction for MCM3	www.ncbi.nlm.ni...
Null ppi.MCM4	View Gene Set	0.00095	8	0.04672	69	Protein-protein-interaction for MCM4	www.ncbi.nlm.ni...
Null ppi.SMN2	View Gene Set	0.0009619	11	0.04672	69	Protein-protein-interaction for SMN2	www.ncbi.nlm.ni...
Null ppi.TRIO	View Gene Set	0.0009399	7	0.04672	69	Protein-protein-interaction for TRIO	www.ncbi.nlm.ni...
Null ppi.HDAC10	View Gene Set	0.0009563	11	0.04672	69	Protein-protein-interaction for HDAC10	www.ncbi.nlm.ni...
Null ppi.PHLPP1	View Gene Set	0.0009966	14	0.04776	75	Protein-protein-interaction for PHLPP1	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null EGFR1	View Gene Set	0.0003651	137	0.003651	1	CELL_MAP - EGFR1 gene set	www.pathwaycomm...
Null Wnt	View Gene Set	0.001095	81	0.005474	2	CELL_MAP - Wnt gene set	www.pathwaycomm...
Null TGFBR	View Gene Set	0.00205	124	0.006833	3	CELL_MAP - TGFBR gene set	www.pathwaycomm...
Null TNF alpha/NF-kB	View Gene Set	0.009709	170	0.02427	4	CELL_MAP - TNF alpha/NF-kB gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Validated targets of C-MYC transcriptional activation	View Gene Set	1.021e-08	80	1.898e-06	1	NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set	www.pathwaycomm...
Null Arf6 downstream pathway	View Gene Set	2.924e-05	93	0.001813	2	NCI_NATURE - Arf6 downstream pathway gene set	www.pathwaycomm...
Null Wnt signaling network	View Gene Set	2.849e-05	203	0.001813	2	NCI_NATURE - Wnt signaling network gene set	www.pathwaycomm...
Null C-MYC pathway	View Gene Set	4.45e-05	149	0.002069	4	NCI_NATURE - C-MYC pathway gene set	www.pathwaycomm...
Null Nectin adhesion pathway	View Gene Set	6.764e-05	126	0.002213	5	NCI_NATURE - Nectin adhesion pathway gene set	www.pathwaycomm...
Null Glypican 3 network	View Gene Set	7.139e-05	209	0.002213	5	NCI_NATURE - Glypican 3 network gene set	www.pathwaycomm...
Null Androgen-mediated signaling	View Gene Set	0.0001014	130	0.002693	7	NCI_NATURE - Androgen-mediated signaling gene set	www.pathwaycomm...
Null LKB1 signaling events	View Gene Set	0.0001199	372	0.002787	8	NCI_NATURE - LKB1 signaling events gene set	www.pathwaycomm...
Null E-cadherin signaling events	View Gene Set	0.0002676	73	0.004678	9	NCI_NATURE - E-cadherin signaling events gene set	www.pathwaycomm...
Null Stabilization and expansion of the E-cadherin adherens junction	View Gene Set	0.0003018	67	0.004678	9	NCI_NATURE - Stabilization and expansion of the E-cadherin adherens junction gene set	www.pathwaycomm...
Null E-cadherin signaling in the nascent adherens junction	View Gene Set	0.0003018	67	0.004678	9	NCI_NATURE - E-cadherin signaling in the nascent adherens junction gene set	www.pathwaycomm...
Null EPHB forward signaling	View Gene Set	0.0002778	40	0.004678	9	NCI_NATURE - EPHB forward signaling gene set	www.pathwaycomm...
Null Noncanonical Wnt signaling pathway	View Gene Set	0.000336	185	0.004807	13	NCI_NATURE - Noncanonical Wnt signaling pathway gene set	www.pathwaycomm...
Null mTOR signaling pathway	View Gene Set	0.0004377	343	0.005816	14	NCI_NATURE - mTOR signaling pathway gene set	www.pathwaycomm...
Null EGFR-dependent Endothelin signaling events	View Gene Set	0.0005215	345	0.006467	15	NCI_NATURE - EGFR-dependent Endothelin signaling events gene set	www.pathwaycomm...
Null Aurora B signaling	View Gene Set	0.0008461	41	0.008531	16	NCI_NATURE - Aurora B signaling gene set	www.pathwaycomm...
Null Regulation of Androgen receptor activity	View Gene Set	0.0008714	108	0.008531	16	NCI_NATURE - Regulation of Androgen receptor activity gene set	www.pathwaycomm...
Null Glypican pathway	View Gene Set	0.0007452	937	0.008531	16	NCI_NATURE - Glypican pathway gene set	www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events	View Gene Set	0.0008437	875	0.008531	16	NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set	www.pathwaycomm...
Null VEGFR3 signaling in lymphatic endothelium	View Gene Set	0.0009188	24	0.008545	20	NCI_NATURE - VEGFR3 signaling in lymphatic endothelium gene set	www.pathwaycomm...
Null ErbB1 downstream signaling	View Gene Set	0.001205	812	0.008963	21	NCI_NATURE - ErbB1 downstream signaling gene set	www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway	View Gene Set	0.001205	812	0.008963	21	NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set	www.pathwaycomm...
Null Canonical Wnt signaling pathway	View Gene Set	0.001085	156	0.008963	21	NCI_NATURE - Canonical Wnt signaling pathway gene set	www.pathwaycomm...
Null Internalization of ErbB1	View Gene Set	0.001205	812	0.008963	21	NCI_NATURE - Internalization of ErbB1 gene set	www.pathwaycomm...
Null Insulin-mediated glucose transport	View Gene Set	0.001045	29	0.008963	21	NCI_NATURE - Insulin-mediated glucose transport gene set	www.pathwaycomm...
Null S1P1 pathway	View Gene Set	0.001446	71	0.009959	26	NCI_NATURE - S1P1 pathway gene set	www.pathwaycomm...
Null E-cadherin signaling in keratinocytes	View Gene Set	0.001401	21	0.009959	26	NCI_NATURE - E-cadherin signaling in keratinocytes gene set	www.pathwaycomm...
Null Angiopoietin receptor Tie2-mediated signaling	View Gene Set	0.001619	50	0.01075	28	NCI_NATURE - Angiopoietin receptor Tie2-mediated signaling gene set	www.pathwaycomm...
Null Sphingosine 1-phosphate (S1P) pathway	View Gene Set	0.001718	138	0.01102	29	NCI_NATURE - Sphingosine 1-phosphate (S1P) pathway gene set	www.pathwaycomm...
Null FoxO family signaling	View Gene Set	0.001845	49	0.0111	30	NCI_NATURE - FoxO family signaling gene set	www.pathwaycomm...
Null Syndecan-4-mediated signaling events	View Gene Set	0.00185	212	0.0111	30	NCI_NATURE - Syndecan-4-mediated signaling events gene set	www.pathwaycomm...
Null ErbB receptor signaling network	View Gene Set	0.002205	841	0.01282	32	NCI_NATURE - ErbB receptor signaling network gene set	www.pathwaycomm...
Null p38 signaling mediated by MAPKAP kinases	View Gene Set	0.002371	21	0.01297	33	NCI_NATURE - p38 signaling mediated by MAPKAP kinases gene set	www.pathwaycomm...
Null PDGFR-beta signaling pathway	View Gene Set	0.002301	55	0.01297	33	NCI_NATURE - PDGFR-beta signaling pathway gene set	www.pathwaycomm...
Null EPHA2 forward signaling	View Gene Set	0.003301	19	0.01754	35	NCI_NATURE - EPHA2 forward signaling gene set	www.pathwaycomm...
Null Nongenotropic Androgen signaling	View Gene Set	0.003818	26	0.01973	36	NCI_NATURE - Nongenotropic Androgen signaling gene set	www.pathwaycomm...
Null IGF1 pathway	View Gene Set	0.004082	271	0.01999	37	NCI_NATURE - IGF1 pathway gene set	www.pathwaycomm...
Null Plasma membrane estrogen receptor signaling	View Gene Set	0.004084	297	0.01999	37	NCI_NATURE - Plasma membrane estrogen receptor signaling gene set	www.pathwaycomm...
Null E2F transcription factor network	View Gene Set	0.004761	73	0.02214	39	NCI_NATURE - E2F transcription factor network gene set	www.pathwaycomm...
Null Fc-epsilon receptor I signaling in mast cells	View Gene Set	0.004666	61	0.02214	39	NCI_NATURE - Fc-epsilon receptor I signaling in mast cells gene set	www.pathwaycomm...
Null EphrinB-EPHB pathway	View Gene Set	0.005381	57	0.02441	41	NCI_NATURE - EphrinB-EPHB pathway gene set	www.pathwaycomm...
Null Coregulation of Androgen receptor activity	View Gene Set	0.005716	61	0.02473	42	NCI_NATURE - Coregulation of Androgen receptor activity gene set	www.pathwaycomm...
Null CDC42 signaling events	View Gene Set	0.005626	219	0.02473	42	NCI_NATURE - CDC42 signaling events gene set	www.pathwaycomm...
Null Signaling events mediated by PRL	View Gene Set	0.006404	23	0.02627	44	NCI_NATURE - Signaling events mediated by PRL gene set	www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt	View Gene Set	0.006496	532	0.02627	44	NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set	www.pathwaycomm...
Null Regulation of Wnt-mediated beta catenin signaling and target gene transcription	View Gene Set	0.006401	135	0.02627	44	NCI_NATURE - Regulation of Wnt-mediated beta catenin signaling and target gene transcription gene set	www.pathwaycomm...
Null Insulin Pathway	View Gene Set	0.007391	263	0.02799	47	NCI_NATURE - Insulin Pathway gene set	www.pathwaycomm...
Null Endothelins	View Gene Set	0.007648	439	0.02799	47	NCI_NATURE - Endothelins gene set	www.pathwaycomm...
Null Arf6 signaling events	View Gene Set	0.007391	263	0.02799	47	NCI_NATURE - Arf6 signaling events gene set	www.pathwaycomm...
Null Arf6 trafficking events	View Gene Set	0.007391	263	0.02799	47	NCI_NATURE - Arf6 trafficking events gene set	www.pathwaycomm...
Null Arf1 pathway	View Gene Set	0.007675	20	0.02799	47	NCI_NATURE - Arf1 pathway gene set	www.pathwaycomm...
Null FOXM1 transcription factor network	View Gene Set	0.0086	42	0.03018	52	NCI_NATURE - FOXM1 transcription factor network gene set	www.pathwaycomm...
Null Regulation of retinoblastoma protein	View Gene Set	0.008489	66	0.03018	52	NCI_NATURE - Regulation of retinoblastoma protein gene set	www.pathwaycomm...
Null Syndecan-1-mediated signaling events	View Gene Set	0.009441	688	0.03252	54	NCI_NATURE - Syndecan-1-mediated signaling events gene set	www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met)	View Gene Set	0.009915	677	0.03353	55	NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set	www.pathwaycomm...
Null IL2 signaling events mediated by STAT5	View Gene Set	0.01091	28	0.03625	56	NCI_NATURE - IL2 signaling events mediated by STAT5 gene set	www.pathwaycomm...
Null ErbB2/ErbB3 signaling events	View Gene Set	0.01116	38	0.03643	57	NCI_NATURE - ErbB2/ErbB3 signaling events gene set	www.pathwaycomm...
Null IFN-gamma pathway	View Gene Set	0.01221	590	0.03915	58	NCI_NATURE - IFN-gamma pathway gene set	www.pathwaycomm...
Null BCR signaling pathway	View Gene Set	0.0145	67	0.04571	59	NCI_NATURE - BCR signaling pathway gene set	www.pathwaycomm...
Null BARD1 signaling events	View Gene Set	0.01502	29	0.04656	60	NCI_NATURE - BARD1 signaling events gene set	www.pathwaycomm...
Null S1P2 pathway	View Gene Set	0.01593	26	0.04857	61	NCI_NATURE - S1P2 pathway gene set	www.pathwaycomm...
Null Regulation of CDC42 activity	View Gene Set	0.01644	231	0.04933	62	NCI_NATURE - Regulation of CDC42 activity gene set	www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Cell Cycle Mitotic	View Gene Set	4.697e-08	312	5.247e-05	1	REACTOME - Cell Cycle Mitotic gene set	www.pathwaycomm... Mitotic&format=...
Null Processing of Capped Intron-Containing Pre-mRNA	View Gene Set	1.743e-07	138	8.855e-05	2	REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set	www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript	View Gene Set	2.378e-07	185	8.855e-05	2	REACTOME - Formation and Maturation of mRNA Transcript gene set	www.pathwaycomm...
Null mRNA Processing	View Gene Set	4.578e-07	158	0.0001279	4	REACTOME - mRNA Processing gene set	www.pathwaycomm...
Null mRNA Splicing - Major Pathway	View Gene Set	1.503e-06	107	0.0002798	5	REACTOME - mRNA Splicing - Major Pathway gene set	www.pathwaycomm...
Null mRNA Splicing	View Gene Set	1.503e-06	107	0.0002798	5	REACTOME - mRNA Splicing gene set	www.pathwaycomm...
Null G2/M Checkpoints	View Gene Set	3.738e-06	43	0.0005781	7	REACTOME - G2/M Checkpoints gene set	www.pathwaycomm...
Null Gene Expression	View Gene Set	4.14e-06	381	0.0005781	7	REACTOME - Gene Expression gene set	www.pathwaycomm...
Null Metabolism of RNA	View Gene Set	4.756e-06	174	0.0005903	9	REACTOME - Metabolism of RNA gene set	www.pathwaycomm...
Null Deadenylation-dependent mRNA decay	View Gene Set	5.649e-06	46	0.000631	10	REACTOME - Deadenylation-dependent mRNA decay gene set	www.pathwaycomm...
Null Activation of ATR in response to replication stress	View Gene Set	6.816e-06	37	0.0006345	11	REACTOME - Activation of ATR in response to replication stress gene set	www.pathwaycomm...
Null DNA strand elongation	View Gene Set	6.527e-06	31	0.0006345	11	REACTOME - DNA strand elongation gene set	www.pathwaycomm...
Null Chromosome Maintenance	View Gene Set	1.215e-05	69	0.001044	13	REACTOME - Chromosome Maintenance gene set	www.pathwaycomm...
Null Activation of the pre-replicative complex	View Gene Set	2.024e-05	30	0.001615	14	REACTOME - Activation of the pre-replicative complex gene set	www.pathwaycomm...
Null HIV Life Cycle	View Gene Set	2.439e-05	103	0.001817	15	REACTOME - HIV Life Cycle gene set	www.pathwaycomm...
Null Transcription	View Gene Set	2.667e-05	178	0.001862	16	REACTOME - Transcription gene set	www.pathwaycomm...
Null DNA Repair	View Gene Set	3.078e-05	108	0.002022	17	REACTOME - DNA Repair gene set	www.pathwaycomm...
Null DNA Replication	View Gene Set	4.106e-05	200	0.002548	18	REACTOME - DNA Replication gene set	www.pathwaycomm...
Null Extension of Telomeres	View Gene Set	5.87e-05	28	0.003451	19	REACTOME - Extension of Telomeres gene set	www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis	View Gene Set	9.632e-05	22	0.005249	20	REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set	www.pathwaycomm...
Null Transcription-coupled NER (TC-NER)	View Gene Set	9.868e-05	45	0.005249	20	REACTOME - Transcription-coupled NER (TC-NER) gene set	www.pathwaycomm...
Null Nucleotide Excision Repair	View Gene Set	0.0001041	51	0.005288	22	REACTOME - Nucleotide Excision Repair gene set	www.pathwaycomm...
Null Signalling to ERKs	View Gene Set	0.0001227	30	0.005961	23	REACTOME - Signalling to ERKs gene set	www.pathwaycomm...
Null M Phase	View Gene Set	0.0001565	90	0.006991	24	REACTOME - M Phase gene set	www.pathwaycomm...
Null Mitotic M-M/G1 phases	View Gene Set	0.0001519	180	0.006991	24	REACTOME - Mitotic M-M/G1 phases gene set	www.pathwaycomm...
Null Mitotic Prometaphase	View Gene Set	0.0001639	86	0.007042	26	REACTOME - Mitotic Prometaphase gene set	www.pathwaycomm...
Null Signalling by NGF	View Gene Set	0.000181	146	0.007219	27	REACTOME - Signalling by NGF gene set	www.pathwaycomm...
Null Deadenylation of mRNA	View Gene Set	0.0001771	22	0.007219	27	REACTOME - Deadenylation of mRNA gene set	www.pathwaycomm...
Null snRNP Assembly	View Gene Set	0.0002	50	0.007446	29	REACTOME - snRNP Assembly gene set	www.pathwaycomm...
Null Metabolism of non-coding RNA	View Gene Set	0.0002	50	0.007446	29	REACTOME - Metabolism of non-coding RNA gene set	www.pathwaycomm...
Null Late Phase of HIV Life Cycle	View Gene Set	0.0002306	92	0.008308	31	REACTOME - Late Phase of HIV Life Cycle gene set	www.pathwaycomm...
Null Lagging Strand Synthesis	View Gene Set	0.0002394	20	0.008355	32	REACTOME - Lagging Strand Synthesis gene set	www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm	View Gene Set	0.0002652	55	0.008976	33	REACTOME - Transport of Mature Transcript to Cytoplasm gene set	www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere	View Gene Set	0.0002948	35	0.009147	34	REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set	www.pathwaycomm...
Null Nucleosome assembly	View Gene Set	0.0002948	35	0.009147	34	REACTOME - Nucleosome assembly gene set	www.pathwaycomm...
Null Destabilization of mRNA by KSRP	View Gene Set	0.0002934	18	0.009147	34	REACTOME - Destabilization of mRNA by KSRP gene set	www.pathwaycomm...
Null Signalling to RAS	View Gene Set	0.0003345	22	0.0101	37	REACTOME - Signalling to RAS gene set	www.pathwaycomm...
Null SHC-related events	View Gene Set	0.0004039	16	0.01187	38	REACTOME - SHC-related events gene set	www.pathwaycomm...
Null Down-stream signal transduction	View Gene Set	0.0004615	28	0.01322	39	REACTOME - Down-stream signal transduction gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription	View Gene Set	0.000519	101	0.01414	40	REACTOME - RNA Polymerase II Transcription gene set	www.pathwaycomm...
Null Metabolism of carbohydrates	View Gene Set	0.0005077	93	0.01414	40	REACTOME - Metabolism of carbohydrates gene set	www.pathwaycomm...
Null MAP kinase activation in TLR cascade	View Gene Set	0.0005987	33	0.01592	42	REACTOME - MAP kinase activation in TLR cascade gene set	www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript	View Gene Set	0.0006262	51	0.01627	43	REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA	View Gene Set	0.0006746	34	0.01674	44	REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set	www.pathwaycomm...
Null mRNA 3'-end processing	View Gene Set	0.0006746	34	0.01674	44	REACTOME - mRNA 3'-end processing gene set	www.pathwaycomm...
Null Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex	View Gene Set	0.0008273	6	0.02009	46	REACTOME - Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex gene set	www.pathwaycomm...
Null Interactions of Rev with host cellular proteins	View Gene Set	0.0008453	33	0.02009	47	REACTOME - Interactions of Rev with host cellular proteins gene set	www.pathwaycomm...
Null Pyruvate metabolism and Citric Acid (TCA) cycle	View Gene Set	0.0008999	31	0.02094	48	REACTOME - Pyruvate metabolism and Citric Acid (TCA) cycle gene set	www.pathwaycomm...
Null G1/S-Specific Transcription	View Gene Set	0.001017	16	0.02319	49	REACTOME - G1/S-Specific Transcription gene set	www.pathwaycomm...
Null Telomere Maintenance	View Gene Set	0.00106	49	0.02368	50	REACTOME - Telomere Maintenance gene set	www.pathwaycomm...
Null G2/M DNA damage checkpoint	View Gene Set	0.00116	29	0.02491	51	REACTOME - G2/M DNA damage checkpoint gene set	www.pathwaycomm...
Null Prolonged ERK activation events	View Gene Set	0.001155	20	0.02491	51	REACTOME - Prolonged ERK activation events gene set	www.pathwaycomm...
Null Metabolism of mRNA	View Gene Set	0.001264	125	0.02663	53	REACTOME - Metabolism of mRNA gene set	www.pathwaycomm...
Null MyD88:Mal cascade initiated on plasma membrane	View Gene Set	0.001307	65	0.02704	54	REACTOME - MyD88:Mal cascade initiated on plasma membrane gene set	www.pathwaycomm...
Null Insulin receptor signalling cascade	View Gene Set	0.001357	56	0.02755	55	REACTOME - Insulin receptor signalling cascade gene set	www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts	View Gene Set	0.001399	36	0.02791	56	REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set	www.pathwaycomm...
Null ERK/MAPK targets	View Gene Set	0.001452	13	0.02846	57	REACTOME - ERK/MAPK targets gene set	www.pathwaycomm...
Null mRNA Splicing - Minor Pathway	View Gene Set	0.001668	42	0.03092	58	REACTOME - mRNA Splicing - Minor Pathway gene set	www.pathwaycomm...
Null Post-Elongation Processing of the Transcript	View Gene Set	0.001791	43	0.03092	58	REACTOME - Post-Elongation Processing of the Transcript gene set	www.pathwaycomm...
Null RNA Polymerase III Transcription	View Gene Set	0.001753	34	0.03092	58	REACTOME - RNA Polymerase III Transcription gene set	www.pathwaycomm...
Null RNA Polymerase III Abortive And Retractive Initiation	View Gene Set	0.001753	34	0.03092	58	REACTOME - RNA Polymerase III Abortive And Retractive Initiation gene set	www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region	View Gene Set	0.001791	43	0.03092	58	REACTOME - Cleavage of Growing Transcript in the Termination Region gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription Termination	View Gene Set	0.001791	43	0.03092	58	REACTOME - RNA Polymerase II Transcription Termination gene set	www.pathwaycomm...
Null Global Genomic NER (GG-NER)	View Gene Set	0.001688	35	0.03092	58	REACTOME - Global Genomic NER (GG-NER) gene set	www.pathwaycomm...
Null Cyclin A/B1 associated events during G2/M transition	View Gene Set	0.0018	19	0.03092	58	REACTOME - Cyclin A/B1 associated events during G2/M transition gene set	www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript	View Gene Set	0.001869	35	0.03133	66	REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set	www.pathwaycomm...
Null Processing of Intronless Pre-mRNAs	View Gene Set	0.001907	14	0.03133	66	REACTOME - Processing of Intronless Pre-mRNAs gene set	www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA	View Gene Set	0.001893	32	0.03133	66	REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set	www.pathwaycomm...
Null Platelet degranulation	View Gene Set	0.001966	32	0.03182	69	REACTOME - Platelet degranulation gene set	www.pathwaycomm...
Null Toll Like Receptor 2 Cascade	View Gene Set	0.002059	68	0.0319	70	REACTOME - Toll Like Receptor 2 Cascade gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER	View Gene Set	0.002085	16	0.0319	70	REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER	View Gene Set	0.002085	16	0.0319	70	REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set	www.pathwaycomm...
Null Adherens junctions interactions	View Gene Set	0.002026	27	0.0319	70	REACTOME - Adherens junctions interactions gene set	www.pathwaycomm...
Null Toll Like Receptor 10 (TLR10) Cascade	View Gene Set	0.002347	63	0.03436	74	REACTOME - Toll Like Receptor 10 (TLR10) Cascade gene set	www.pathwaycomm...
Null MyD88 cascade initiated on plasma membrane	View Gene Set	0.002347	62	0.03436	74	REACTOME - MyD88 cascade initiated on plasma membrane gene set	www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	View Gene Set	0.002374	93	0.03436	74	REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set	www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null IRS-related events	View Gene Set	0.002385	53	0.03436	74	REACTOME - IRS-related events gene set	www.pathwaycomm...
Null E2F mediated regulation of DNA replication	View Gene Set	0.002399	28	0.03436	74	REACTOME - E2F mediated regulation of DNA replication gene set	www.pathwaycomm...
Null ARMS-mediated activation	View Gene Set	0.00244	19	0.03449	79	REACTOME - ARMS-mediated activation gene set	www.pathwaycomm...
Null NFkB and MAP kinases activation mediated by TLR4 signaling repertoire	View Gene Set	0.002522	57	0.03479	80	REACTOME - NFkB and MAP kinases activation mediated by TLR4 signaling repertoire gene set	www.pathwaycomm...
Null Frs2-mediated activation	View Gene Set	0.002523	19	0.03479	80	REACTOME - Frs2-mediated activation gene set	www.pathwaycomm...
Null Activated TLR4 signalling	View Gene Set	0.002559	75	0.03486	82	REACTOME - Activated TLR4 signalling gene set	www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA	View Gene Set	0.00266	33	0.03579	83	REACTOME - Transport of the SLBP Dependant Mature mRNA gene set	www.pathwaycomm...
Null Shc events in EGFR signaling	View Gene Set	0.002907	16	0.03853	84	REACTOME - Shc events in EGFR signaling gene set	www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER	View Gene Set	0.002966	15	0.03853	84	REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set	www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase	View Gene Set	0.002966	15	0.03853	84	REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set	www.pathwaycomm...
Null SHC-mediated signalling	View Gene Set	0.003078	13	0.03952	87	REACTOME - SHC-mediated signalling gene set	www.pathwaycomm...
Null Signaling by PDGF	View Gene Set	0.003474	32	0.04409	88	REACTOME - Signaling by PDGF gene set	www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA	View Gene Set	0.003535	32	0.04416	89	REACTOME - Transport of the SLBP independent Mature mRNA gene set	www.pathwaycomm...
Null Toll Like Receptor 5 (TLR5) Cascade	View Gene Set	0.003558	63	0.04416	89	REACTOME - Toll Like Receptor 5 (TLR5) Cascade gene set	www.pathwaycomm...
Null Response to elevated platelet cytosolic Ca2+	View Gene Set	0.00362	43	0.04443	91	REACTOME - Response to elevated platelet cytosolic Ca2+ gene set	www.pathwaycomm...
Null Nuclear import of Rev protein	View Gene Set	0.003706	30	0.045	92	REACTOME - Nuclear import of Rev protein gene set	www.pathwaycomm...
Null Cyclin B2 mediated events	View Gene Set	0.003809	5	0.04575	93	REACTOME - Cyclin B2 mediated events gene set	www.pathwaycomm...
Null NGF signalling via TRKA from the plasma membrane	View Gene Set	0.003983	110	0.04733	94	REACTOME - NGF signalling via TRKA from the plasma membrane gene set	www.pathwaycomm...
Null MyD88-independent cascade initiated on plasma membrane	View Gene Set	0.004146	61	0.04875	95	REACTOME - MyD88-independent cascade initiated on plasma membrane gene set	www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-27b	View Gene Set	1.628e-09	1732	1.102e-06	1	microRNA targets for hsa-miR-27b from miranda.targets	www.mirbase.org...
Null hsa-miR-27a	View Gene Set	4.414e-09	1723	1.494e-06	2	microRNA targets for hsa-miR-27a from miranda.targets	www.mirbase.org...
Null hsa-miR-1207-5p	View Gene Set	2.356e-06	2608	0.0003988	3	microRNA targets for hsa-miR-1207-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-886-5p	View Gene Set	2.109e-06	504	0.0003988	3	microRNA targets for hsa-miR-886-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-1321	View Gene Set	2.794e-05	1850	0.003783	5	microRNA targets for hsa-miR-1321 from miranda.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	4.24e-05	1921	0.004785	6	microRNA targets for hsa-miR-486-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-1224-3p	View Gene Set	9.123e-05	1415	0.006916	7	microRNA targets for hsa-miR-1224-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-663	View Gene Set	9.195e-05	993	0.006916	7	microRNA targets for hsa-miR-663 from miranda.targets	www.mirbase.org...
Null hsa-miR-940	View Gene Set	8.967e-05	1873	0.006916	7	microRNA targets for hsa-miR-940 from miranda.targets	www.mirbase.org...
Null hsa-miR-1275	View Gene Set	0.0002476	1509	0.01676	10	microRNA targets for hsa-miR-1275 from miranda.targets	www.mirbase.org...
Null hsa-miR-220c	View Gene Set	0.0003372	1892	0.01918	11	microRNA targets for hsa-miR-220c from miranda.targets	www.mirbase.org...
Null hsa-miR-564	View Gene Set	0.000363	456	0.01918	11	microRNA targets for hsa-miR-564 from miranda.targets	www.mirbase.org...
Null hsa-miR-608	View Gene Set	0.0003682	2815	0.01918	11	microRNA targets for hsa-miR-608 from miranda.targets	www.mirbase.org...
Null hsa-miR-760	View Gene Set	0.0004597	1689	0.02223	14	microRNA targets for hsa-miR-760 from miranda.targets	www.mirbase.org...
Null hsa-miR-625	View Gene Set	0.0005605	1754	0.02508	15	microRNA targets for hsa-miR-625 from miranda.targets	www.mirbase.org...
Null hsa-miR-661	View Gene Set	0.0005926	2076	0.02508	15	microRNA targets for hsa-miR-661 from miranda.targets	www.mirbase.org...
Null hsa-miR-1225-3p	View Gene Set	0.001228	950	0.04617	17	microRNA targets for hsa-miR-1225-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-612	View Gene Set	0.001194	2298	0.04617	17	microRNA targets for hsa-miR-612 from miranda.targets	www.mirbase.org...
Null hsa-miR-604	View Gene Set	0.001391	478	0.04957	19	microRNA targets for hsa-miR-604 from miranda.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-331-3p	View Gene Set	4.002e-08	712	1.423e-05	1	microRNA targets for hsa-miR-331-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-940	View Gene Set	3.476e-08	660	1.423e-05	1	microRNA targets for hsa-miR-940 from mirbase.targets	www.mirbase.org...
Null hsa-miR-608	View Gene Set	2.903e-07	729	6.88e-05	3	microRNA targets for hsa-miR-608 from mirbase.targets	www.mirbase.org...
Null hsa-miR-615-3p	View Gene Set	1.678e-06	757	0.0002983	4	microRNA targets for hsa-miR-615-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-423-5p	View Gene Set	5.114e-06	767	0.0006105	5	microRNA targets for hsa-miR-423-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-886-3p	View Gene Set	5.152e-06	745	0.0006105	5	microRNA targets for hsa-miR-886-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-27b	View Gene Set	1.626e-05	789	0.001285	7	microRNA targets for hsa-miR-27b from mirbase.targets	www.mirbase.org...
Null hsa-miR-663	View Gene Set	1.554e-05	743	0.001285	7	microRNA targets for hsa-miR-663 from mirbase.targets	www.mirbase.org...
Null hsa-miR-874	View Gene Set	1.393e-05	722	0.001285	7	microRNA targets for hsa-miR-874 from mirbase.targets	www.mirbase.org...
Null hsa-miR-654-5p	View Gene Set	2.579e-05	718	0.001833	10	microRNA targets for hsa-miR-654-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-658	View Gene Set	3.733e-05	660	0.002413	11	microRNA targets for hsa-miR-658 from mirbase.targets	www.mirbase.org...
Null hsa-miR-149*	View Gene Set	5.162e-05	459	0.003059	12	microRNA targets for hsa-miR-149* from mirbase.targets	www.mirbase.org...
Null hsa-miR-25*	View Gene Set	9.594e-05	418	0.005047	13	microRNA targets for hsa-miR-25* from mirbase.targets	www.mirbase.org...
Null hsa-miR-339-5p	View Gene Set	9.938e-05	659	0.005047	13	microRNA targets for hsa-miR-339-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-483-3p	View Gene Set	0.0001256	702	0.005952	15	microRNA targets for hsa-miR-483-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-296-5p	View Gene Set	0.0001437	755	0.00601	16	microRNA targets for hsa-miR-296-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-604	View Gene Set	0.0001404	691	0.00601	16	microRNA targets for hsa-miR-604 from mirbase.targets	www.mirbase.org...
Null hsa-miR-339-3p	View Gene Set	0.0001585	797	0.006261	18	microRNA targets for hsa-miR-339-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-193a-5p	View Gene Set	0.0002087	767	0.007433	19	microRNA targets for hsa-miR-193a-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-27a	View Gene Set	0.0002091	781	0.007433	19	microRNA targets for hsa-miR-27a from mirbase.targets	www.mirbase.org...
Null hsa-miR-744	View Gene Set	0.0002439	715	0.008259	21	microRNA targets for hsa-miR-744 from mirbase.targets	www.mirbase.org...
Null hsa-miR-149	View Gene Set	0.000272	602	0.008791	22	microRNA targets for hsa-miR-149 from mirbase.targets	www.mirbase.org...
Null hsa-miR-185*	View Gene Set	0.0003254	506	0.009097	23	microRNA targets for hsa-miR-185* from mirbase.targets	www.mirbase.org...
Null hsa-miR-328	View Gene Set	0.0003394	685	0.009097	23	microRNA targets for hsa-miR-328 from mirbase.targets	www.mirbase.org...
Null hsa-miR-554	View Gene Set	0.0003167	708	0.009097	23	microRNA targets for hsa-miR-554 from mirbase.targets	www.mirbase.org...
Null hsa-miR-637	View Gene Set	0.0003454	672	0.009097	23	microRNA targets for hsa-miR-637 from mirbase.targets	www.mirbase.org...
Null hsa-miR-933	View Gene Set	0.0003106	618	0.009097	23	microRNA targets for hsa-miR-933 from mirbase.targets	www.mirbase.org...
Null hsa-miR-602	View Gene Set	0.0003752	710	0.00929	28	microRNA targets for hsa-miR-602 from mirbase.targets	www.mirbase.org...
Null hsa-miR-937	View Gene Set	0.0003789	654	0.00929	28	microRNA targets for hsa-miR-937 from mirbase.targets	www.mirbase.org...
Null hsa-miR-326	View Gene Set	0.0005789	650	0.01372	30	microRNA targets for hsa-miR-326 from mirbase.targets	www.mirbase.org...
Null hsa-miR-324-3p	View Gene Set	0.0006138	788	0.0139	31	microRNA targets for hsa-miR-324-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-572	View Gene Set	0.0006258	602	0.0139	31	microRNA targets for hsa-miR-572 from mirbase.targets	www.mirbase.org...
Null hsa-miR-423-3p	View Gene Set	0.0008428	741	0.01816	33	microRNA targets for hsa-miR-423-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-646	View Gene Set	0.001067	745	0.02231	34	microRNA targets for hsa-miR-646 from mirbase.targets	www.mirbase.org...
Null hsa-miR-324-5p	View Gene Set	0.00115	801	0.02335	35	microRNA targets for hsa-miR-324-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	0.001288	773	0.02544	36	microRNA targets for hsa-miR-486-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-346	View Gene Set	0.001417	568	0.02723	37	microRNA targets for hsa-miR-346 from mirbase.targets	www.mirbase.org...
Null hsa-miR-525-3p	View Gene Set	0.001543	790	0.02888	38	microRNA targets for hsa-miR-525-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-661	View Gene Set	0.001681	575	0.03064	39	microRNA targets for hsa-miR-661 from mirbase.targets	www.mirbase.org...
Null hsa-miR-564	View Gene Set	0.001737	706	0.03087	40	microRNA targets for hsa-miR-564 from mirbase.targets	www.mirbase.org...
Null hsa-miR-484	View Gene Set	0.001842	733	0.03195	41	microRNA targets for hsa-miR-484 from mirbase.targets	www.mirbase.org...
Null hsa-miR-639	View Gene Set	0.001942	561	0.03287	42	microRNA targets for hsa-miR-639 from mirbase.targets	www.mirbase.org...
Null hsa-miR-615-5p	View Gene Set	0.002067	848	0.03418	43	microRNA targets for hsa-miR-615-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-625	View Gene Set	0.002296	650	0.0371	44	microRNA targets for hsa-miR-625 from mirbase.targets	www.mirbase.org...
Null hsa-miR-541	View Gene Set	0.002872	711	0.04168	45	microRNA targets for hsa-miR-541 from mirbase.targets	www.mirbase.org...
Null hsa-miR-566	View Gene Set	0.002843	787	0.04168	45	microRNA targets for hsa-miR-566 from mirbase.targets	www.mirbase.org...
Null hsa-miR-638	View Gene Set	0.002859	639	0.04168	45	microRNA targets for hsa-miR-638 from mirbase.targets	www.mirbase.org...
Null hsa-miR-671-3p	View Gene Set	0.002701	767	0.04168	45	microRNA targets for hsa-miR-671-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-885-3p	View Gene Set	0.002864	799	0.04168	45	microRNA targets for hsa-miR-885-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-601	View Gene Set	0.002936	699	0.04175	50	microRNA targets for hsa-miR-601 from mirbase.targets	www.mirbase.org...
Null hsa-miR-524-3p	View Gene Set	0.003202	791	0.04465	51	microRNA targets for hsa-miR-524-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-560	View Gene Set	0.003414	730	0.04668	52	microRNA targets for hsa-miR-560 from mirbase.targets	www.mirbase.org...
Null hsa-miR-296-3p	View Gene Set	0.003623	905	0.0486	53	microRNA targets for hsa-miR-296-3p from mirbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-27a	View Gene Set	3.318e-15	518	1.835e-12	1	microRNA targets for hsa-miR-27a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-27b	View Gene Set	3.758e-14	528	1.039e-11	2	microRNA targets for hsa-miR-27b from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-128a	View Gene Set	5.42e-06	416	0.0007493	3	microRNA targets for hsa-miR-128a from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-128b	View Gene Set	5.42e-06	416	0.0007493	3	microRNA targets for hsa-miR-128b from mirtarget2.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-27a	View Gene Set	3.393e-11	620	3.298e-09	1	microRNA targets for hsa-miR-27a from pictar.targets	www.mirbase.org...
Null hsa-miR-27b	View Gene Set	3.706e-11	629	3.298e-09	1	microRNA targets for hsa-miR-27b from pictar.targets	www.mirbase.org...
Null hsa-miR-128b	View Gene Set	3.754e-08	532	2.227e-06	3	microRNA targets for hsa-miR-128b from pictar.targets	www.mirbase.org...
Null hsa-miR-128a	View Gene Set	5.322e-08	536	2.368e-06	4	microRNA targets for hsa-miR-128a from pictar.targets	www.mirbase.org...
Null hsa-miR-331	View Gene Set	9.764e-05	194	0.003476	5	microRNA targets for hsa-miR-331 from pictar.targets	www.mirbase.org...
Null hsa-miR-205	View Gene Set	0.0008456	237	0.02509	6	microRNA targets for hsa-miR-205 from pictar.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-27a	View Gene Set	2.615e-23	921	3.19e-21	1	microRNA targets for hsa-miR-27a from targetscan.targets	www.mirbase.org...
Null hsa-miR-27b	View Gene Set	2.615e-23	921	3.19e-21	1	microRNA targets for hsa-miR-27b from targetscan.targets	www.mirbase.org...
Null hsa-miR-128	View Gene Set	5.493e-15	785	4.468e-13	3	microRNA targets for hsa-miR-128 from targetscan.targets	www.mirbase.org...
Null hsa-miR-320a	View Gene Set	2.494e-10	539	8.693e-09	4	microRNA targets for hsa-miR-320a from targetscan.targets	www.mirbase.org...
Null hsa-miR-320b	View Gene Set	2.494e-10	539	8.693e-09	4	microRNA targets for hsa-miR-320b from targetscan.targets	www.mirbase.org...
Null hsa-miR-320c	View Gene Set	2.494e-10	539	8.693e-09	4	microRNA targets for hsa-miR-320c from targetscan.targets	www.mirbase.org...
Null hsa-miR-320d	View Gene Set	2.494e-10	539	8.693e-09	4	microRNA targets for hsa-miR-320d from targetscan.targets	www.mirbase.org...
Null hsa-miR-1	View Gene Set	2.397e-05	583	0.0005849	8	microRNA targets for hsa-miR-1 from targetscan.targets	www.mirbase.org...
Null hsa-miR-206	View Gene Set	2.397e-05	583	0.0005849	8	microRNA targets for hsa-miR-206 from targetscan.targets	www.mirbase.org...
Null hsa-miR-613	View Gene Set	2.397e-05	583	0.0005849	8	microRNA targets for hsa-miR-613 from targetscan.targets	www.mirbase.org...
Null hsa-miR-495	View Gene Set	0.0001464	570	0.003247	11	microRNA targets for hsa-miR-495 from targetscan.targets	www.mirbase.org...
Null hsa-miR-214	View Gene Set	0.0002742	409	0.005576	12	microRNA targets for hsa-miR-214 from targetscan.targets	www.mirbase.org...
Null hsa-miR-122	View Gene Set	0.002501	124	0.03249	13	microRNA targets for hsa-miR-122 from targetscan.targets	www.mirbase.org...
Null hsa-miR-15a	View Gene Set	0.002929	965	0.03249	13	microRNA targets for hsa-miR-15a from targetscan.targets	www.mirbase.org...
Null hsa-miR-15b	View Gene Set	0.002929	965	0.03249	13	microRNA targets for hsa-miR-15b from targetscan.targets	www.mirbase.org...
Null hsa-miR-16	View Gene Set	0.002929	965	0.03249	13	microRNA targets for hsa-miR-16 from targetscan.targets	www.mirbase.org...
Null hsa-miR-195	View Gene Set	0.002929	965	0.03249	13	microRNA targets for hsa-miR-195 from targetscan.targets	www.mirbase.org...
Null hsa-miR-22	View Gene Set	0.002876	330	0.03249	13	microRNA targets for hsa-miR-22 from targetscan.targets	www.mirbase.org...
Null hsa-miR-424	View Gene Set	0.002929	965	0.03249	13	microRNA targets for hsa-miR-424 from targetscan.targets	www.mirbase.org...
Null hsa-miR-497	View Gene Set	0.002929	965	0.03249	13	microRNA targets for hsa-miR-497 from targetscan.targets	www.mirbase.org...
Null hsa-miR-499-5p	View Gene Set	0.002798	212	0.03249	13	microRNA targets for hsa-miR-499-5p from targetscan.targets	www.mirbase.org...
Null hsa-miR-504	View Gene Set	0.002144	145	0.03249	13	microRNA targets for hsa-miR-504 from targetscan.targets	www.mirbase.org...
Null hsa-miR-223	View Gene Set	0.003604	202	0.03666	23	microRNA targets for hsa-miR-223 from targetscan.targets	www.mirbase.org...
Null hsa-miR-342-3p	View Gene Set	0.003605	169	0.03666	23	microRNA targets for hsa-miR-342-3p from targetscan.targets	www.mirbase.org...
Null hsa-miR-137	View Gene Set	0.003893	857	0.038	25	microRNA targets for hsa-miR-137 from targetscan.targets	www.mirbase.org...
Null hsa-miR-153	View Gene Set	0.004595	549	0.04313	26	microRNA targets for hsa-miR-153 from targetscan.targets	www.mirbase.org...
Null hsa-miR-148a	View Gene Set	0.005317	536	0.04473	27	microRNA targets for hsa-miR-148a from targetscan.targets	www.mirbase.org...
Null hsa-miR-148b	View Gene Set	0.005317	536	0.04473	27	microRNA targets for hsa-miR-148b from targetscan.targets	www.mirbase.org...
Null hsa-miR-152	View Gene Set	0.005317	536	0.04473	27	microRNA targets for hsa-miR-152 from targetscan.targets	www.mirbase.org...
Null hsa-miR-10a	View Gene Set	0.006221	186	0.04897	30	microRNA targets for hsa-miR-10a from targetscan.targets	www.mirbase.org...
Null hsa-miR-10b	View Gene Set	0.006221	186	0.04897	30	microRNA targets for hsa-miR-10b from targetscan.targets	www.mirbase.org...
Null hsa-miR-197	View Gene Set	0.006646	140	0.04952	32	microRNA targets for hsa-miR-197 from targetscan.targets	www.mirbase.org...
Null hsa-miR-217	View Gene Set	0.006697	237	0.04952	32	microRNA targets for hsa-miR-217 from targetscan.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-27a	View Gene Set	4.532e-14	208	9.309e-11	1	microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-27b	View Gene Set	2.48e-12	208	2.547e-09	2	microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-27a	View Gene Set	9.666e-12	157	6.618e-09	3	microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-27a	View Gene Set	2.519e-11	163	1.294e-08	4	microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-27b	View Gene Set	5.782e-11	157	2.375e-08	5	microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-27b	View Gene Set	2.936e-10	161	1.005e-07	6	microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-27a	View Gene Set	2.402e-09	304	6.167e-07	7	microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-27b	View Gene Set	2.276e-09	305	6.167e-07	7	microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-27a	View Gene Set	9.931e-07	61	0.0002266	9	microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-27b	View Gene Set	1.967e-06	60	0.0004039	10	microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-27b	View Gene Set	5.691e-06	51	0.001063	11	microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-27a	View Gene Set	1.203e-05	50	0.00206	12	microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-27b	View Gene Set	1.527e-05	90	0.002412	13	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-27b	View Gene Set	4.885e-05	34	0.007167	14	microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-27b from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-27a	View Gene Set	9.107e-05	91	0.01247	15	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-27a	View Gene Set	0.0001286	35	0.01651	16	microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-27a from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-582-3p	View Gene Set	0.0001666	44	0.01902	17	microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-582-3p from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	0.0001578	64	0.01902	17	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	0.0002389	39	0.02583	19	microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-1	View Gene Set	0.0003073	54	0.03156	20	microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	0.0003529	55	0.03452	21	microRNA targets for mirbase.pictar.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-362-3p	View Gene Set	0.0004891	23	0.04186	22	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-362-3p from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-224	View Gene Set	0.0004784	70	0.04186	22	microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-224 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	0.0004853	62	0.04186	22	microRNA targets for mirbase.pictar.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	2.517e-27	1176	5.824e-24	1	microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	9.872e-27	1185	1.142e-23	2	microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	3.463e-26	1322	2.671e-23	3	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	2.167e-25	1337	1.253e-22	4	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	1.881e-23	1801	8.706e-21	5	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	8.394e-23	1087	3.119e-20	6	microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	9.435e-23	1097	3.119e-20	6	microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	2.243e-22	1785	6.488e-20	8	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	8.407e-21	1586	2.162e-18	9	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	8.456e-20	1739	1.957e-17	10	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	2.373e-19	1576	4.991e-17	11	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	1.687e-18	2242	3.252e-16	12	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	2.338e-18	2255	3.998e-16	13	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	2.419e-18	1721	3.998e-16	13	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	3.835e-16	2111	5.916e-14	15	microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	5.335e-16	2604	7.716e-14	16	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	6.935e-16	2103	9.439e-14	17	microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-27a	View Gene Set	7.397e-16	955	9.51e-14	18	microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-27b	View Gene Set	1.373e-15	2221	1.672e-13	19	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-27b	View Gene Set	1.622e-15	975	1.877e-13	20	microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	2.644e-15	2209	2.913e-13	21	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-27b	View Gene Set	9.398e-15	1605	9.885e-13	22	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-27a	View Gene Set	1.018e-14	2580	1.024e-12	23	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-27a	View Gene Set	1.161e-13	1581	1.12e-11	24	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-27b	View Gene Set	5.117e-13	2168	4.736e-11	25	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-27b	View Gene Set	6.615e-13	1221	5.888e-11	26	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-27a	View Gene Set	1.981e-12	2147	1.698e-10	27	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-27b	View Gene Set	2.823e-12	2425	2.333e-10	28	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-27b	View Gene Set	5.638e-12	1325	4.499e-10	29	microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-27a	View Gene Set	6.125e-12	1204	4.724e-10	30	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-27b	View Gene Set	9.241e-12	1935	6.898e-10	31	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-27b	View Gene Set	1.976e-11	2497	1.429e-09	32	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-27b	View Gene Set	3.355e-11	1993	2.353e-09	33	microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-27a	View Gene Set	3.468e-11	1917	2.36e-09	34	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-27a	View Gene Set	5.001e-11	2394	3.306e-09	35	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-27a	View Gene Set	9.976e-11	1979	6.239e-09	36	microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-27a	View Gene Set	9.944e-11	1307	6.239e-09	36	microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-27b	View Gene Set	1.126e-10	2262	6.855e-09	38	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-27b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-27a	View Gene Set	3.515e-10	2467	2.086e-08	39	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-27a	View Gene Set	2.096e-09	2235	1.212e-07	40	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-27a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940	View Gene Set	1.712e-07	2504	9.66e-06	41	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608	View Gene Set	2.583e-07	3384	1.423e-05	42	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663	View Gene Set	3.46e-07	1582	1.862e-05	43	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-128a	View Gene Set	1.281e-06	1505	6.734e-05	44	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-128a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p	View Gene Set	2.264e-06	764	0.0001164	45	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p	View Gene Set	2.749e-06	1187	0.0001383	46	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-328	View Gene Set	3.717e-06	916	0.000183	47	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604	View Gene Set	5.525e-06	1079	0.0002664	48	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p	View Gene Set	8.777e-06	2496	0.0004145	49	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p	View Gene Set	9.461e-06	2545	0.0004379	50	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	1.947e-05	1071	0.0008832	51	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744	View Gene Set	2.225e-05	1378	0.0009901	52	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	4.887e-05	2574	0.002133	53	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p	View Gene Set	5.697e-05	2597	0.002441	54	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326	View Gene Set	6.07e-05	1066	0.002554	55	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-326	View Gene Set	6.653e-05	2171	0.002749	56	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328	View Gene Set	8.844e-05	872	0.00359	57	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564	View Gene Set	9.811e-05	1071	0.003914	58	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612	View Gene Set	0.0001065	2970	0.004178	59	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328	View Gene Set	0.0001188	946	0.004507	60	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874	View Gene Set	0.0001173	975	0.004507	60	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p	View Gene Set	0.0001373	1113	0.005124	62	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760	View Gene Set	0.000143	2252	0.005254	63	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p	View Gene Set	0.0001498	1112	0.005416	64	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p	View Gene Set	0.0001612	1790	0.005567	65	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-149	View Gene Set	0.0001599	975	0.005567	65	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-214	View Gene Set	0.0001572	922	0.005567	65	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.0001715	2156	0.005834	68	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-658	View Gene Set	0.0001913	1603	0.006323	69	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-658 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.0001896	1065	0.006323	69	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p	View Gene Set	0.000201	1519	0.006552	71	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937	View Gene Set	0.0002112	820	0.006735	72	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-149	View Gene Set	0.0002125	940	0.006735	72	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326	View Gene Set	0.0002382	2147	0.007252	74	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p	View Gene Set	0.0002344	1681	0.007252	74	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-3p	View Gene Set	0.0002376	1039	0.007252	74	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504	View Gene Set	0.0003096	834	0.009304	77	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-149	View Gene Set	0.000316	935	0.009375	78	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	0.0003626	783	0.01062	79	microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	0.0003807	702	0.01101	80	microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637	View Gene Set	0.0004552	2846	0.013	81	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-let-7b	View Gene Set	0.0004736	2447	0.01332	82	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-328	View Gene Set	0.0004776	1838	0.01332	82	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-625	View Gene Set	0.0004913	2308	0.01353	84	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-625 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-506	View Gene Set	0.0005942	1985	0.01618	85	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-5p	View Gene Set	0.000673	1342	0.01796	86	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	0.0006752	1142	0.01796	86	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-554	View Gene Set	0.0006888	1183	0.01811	88	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-554 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541	View Gene Set	0.0007584	1832	0.01972	89	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-220c	View Gene Set	0.0007675	2612	0.01973	90	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-220c from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-let-7e	View Gene Set	0.0008251	2728	0.02075	91	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-let-7e from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-15b	View Gene Set	0.0008195	1773	0.02075	91	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-15b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328	View Gene Set	0.000916	1858	0.02208	93	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p	View Gene Set	0.0008986	1899	0.02208	93	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-602	View Gene Set	0.0008991	1257	0.02208	93	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-602 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-328	View Gene Set	0.0009126	1892	0.02208	93	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572	View Gene Set	0.0009613	825	0.02293	97	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-let-7b	View Gene Set	0.001008	1978	0.0238	98	microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661	View Gene Set	0.00105	2615	0.02455	99	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p	View Gene Set	0.001176	1044	0.02695	100	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-let-7b	View Gene Set	0.001171	1965	0.02695	100	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	0.001237	2177	0.02805	102	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-933	View Gene Set	0.00131	854	0.02905	103	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-933 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-let-7b	View Gene Set	0.001318	2146	0.02905	103	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214	View Gene Set	0.001306	1354	0.02905	103	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-491-5p	View Gene Set	0.00138	1429	0.03013	106	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-491-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-let-7e	View Gene Set	0.001413	2588	0.03055	107	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-let-7e from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-16	View Gene Set	0.001439	1737	0.03084	108	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-16 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939	View Gene Set	0.001512	2729	0.03211	109	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-508-5p	View Gene Set	0.001558	1930	0.03275	110	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-508-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-205	View Gene Set	0.001571	1059	0.03275	110	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-205 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p	View Gene Set	0.00179	1764	0.03689	112	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	0.001801	832	0.03689	112	microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	0.00185	768	0.03755	114	microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-124	View Gene Set	0.001869	2458	0.0376	115	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-let-7b	View Gene Set	0.00193	2581	0.03808	116	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.001939	1813	0.03808	116	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-214	View Gene Set	0.001943	1420	0.03808	116	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-324-5p	View Gene Set	0.001959	892	0.03808	116	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-324-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-let-7c	View Gene Set	0.002055	1582	0.03964	120	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-let-7c from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-326	View Gene Set	0.002097	1819	0.0401	121	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-16	View Gene Set	0.002151	1638	0.0408	122	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-16 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-15b	View Gene Set	0.002232	1735	0.04198	123	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-15b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146b-3p	View Gene Set	0.002368	1606	0.04383	124	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146b-3p from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.002355	652	0.04383	124	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-let-7e	View Gene Set	0.002544	2399	0.04467	126	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-let-7e from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p	View Gene Set	0.002528	1946	0.04467	126	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p	View Gene Set	0.002498	1053	0.04467	126	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-574-3p	View Gene Set	0.002564	1088	0.04467	126	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-574-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-766	View Gene Set	0.002587	2106	0.04467	126	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-766 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-124	View Gene Set	0.00248	1943	0.04467	126	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-124 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-let-7b	View Gene Set	0.002454	1604	0.04467	126	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-223	View Gene Set	0.002489	943	0.04467	126	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-223 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-328	View Gene Set	0.002583	380	0.04467	126	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124	View Gene Set	0.002661	1909	0.04561	135	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion	www.mirbase.org...

Results

AFA results for: miR.27bvsControl.ls

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: GO

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down