Results

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Go to: Gene Set Collection: KEGG
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Go to: Gene Set Collection: tfbsK3Z3

AFA results for: tSAHAda2DU

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04110 View Gene Set 2.168e-11 128 4.64e-09 1 Cell cycle www.genome.jp/d...
KEGG 03040 View Gene Set 1.576e-08 128 1.686e-06 2 Spliceosome www.genome.jp/d...
KEGG 00240 View Gene Set 7.532e-08 99 5.373e-06 3 Pyrimidine metabolism www.genome.jp/d...
KEGG 03410 View Gene Set 1.164e-06 34 6.229e-05 4 Base excision repair www.genome.jp/d...
KEGG 03420 View Gene Set 1.751e-06 44 7.493e-05 5 Nucleotide excision repair www.genome.jp/d...
KEGG 03030 View Gene Set 1.28e-05 36 0.0004564 6 DNA replication www.genome.jp/d...
KEGG 01100 View Gene Set 2.595e-05 1120 0.0007933 7 Metabolic pathways www.genome.jp/d...
KEGG 04145 View Gene Set 7.138e-05 158 0.001909 8 Phagosome www.genome.jp/d...
KEGG 04612 View Gene Set 8.373e-05 78 0.001991 9 Antigen processing and presentation www.genome.jp/d...
KEGG 03020 View Gene Set 0.0001098 29 0.002349 10 RNA polymerase www.genome.jp/d...
KEGG 04120 View Gene Set 0.0001258 139 0.002447 11 Ubiquitin mediated proteolysis www.genome.jp/d...
KEGG 05130 View Gene Set 0.0002249 59 0.00401 12 Pathogenic Escherichia coli infection www.genome.jp/d...
KEGG 03430 View Gene Set 0.0008302 23 0.01367 13 Mismatch repair www.genome.jp/d...
KEGG 04142 View Gene Set 0.0009403 121 0.01437 14 Lysosome www.genome.jp/d...
KEGG 00330 View Gene Set 0.001661 54 0.02091 15 Arginine and proline metabolism www.genome.jp/d...
KEGG 00471 View Gene Set 0.001612 4 0.02091 15 D-Glutamine and D-glutamate metabolism www.genome.jp/d...
KEGG 00970 View Gene Set 0.001467 41 0.02091 15 Aminoacyl-tRNA biosynthesis www.genome.jp/d...
KEGG 04114 View Gene Set 0.001762 114 0.02095 18 Oocyte meiosis www.genome.jp/d...
KEGG 03440 View Gene Set 0.002202 28 0.02481 19 Homologous recombination www.genome.jp/d...
KEGG 00480 View Gene Set 0.00309 50 0.03306 20 Glutathione metabolism www.genome.jp/d...
KEGG 03060 View Gene Set 0.003307 24 0.0337 21 Protein export www.genome.jp/d...
KEGG 00230 View Gene Set 0.004094 161 0.03505 22 Purine metabolism www.genome.jp/d...
KEGG 03018 View Gene Set 0.003781 59 0.03505 22 RNA degradation www.genome.jp/d...
KEGG 03050 View Gene Set 0.003961 48 0.03505 22 Proteasome www.genome.jp/d...
KEGG 05222 View Gene Set 0.00408 84 0.03505 22 Small cell lung cancer www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0044424 View Gene Set 2.804e-67 10976 3.746e-63 1 intracellular part amigo.geneontol...
GO GO:0005622 View Gene Set 9.233e-65 11329 6.168e-61 2 intracellular amigo.geneontol...
GO GO:0043229 View Gene Set 2.138e-62 9346 9.523e-59 3 intracellular organelle amigo.geneontol...
GO GO:0043226 View Gene Set 5.822e-62 9360 1.944e-58 4 organelle amigo.geneontol...
GO GO:0043227 View Gene Set 1.356e-60 8383 3.622e-57 5 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 3.177e-60 8376 7.075e-57 6 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0044422 View Gene Set 1.907e-58 5089 3.639e-55 7 organelle part amigo.geneontol...
GO GO:0044446 View Gene Set 2.662e-58 5019 4.446e-55 8 intracellular organelle part amigo.geneontol...
GO GO:0070013 View Gene Set 1.847e-41 1845 2.742e-38 9 intracellular organelle lumen amigo.geneontol...
GO GO:0005737 View Gene Set 9.524e-41 7676 1.272e-37 10 cytoplasm amigo.geneontol...
GO GO:0031974 View Gene Set 7.794e-40 1917 9.466e-37 11 membrane-enclosed lumen amigo.geneontol...
GO GO:0044428 View Gene Set 1.315e-39 1938 1.464e-36 12 nuclear part amigo.geneontol...
GO GO:0043233 View Gene Set 2.879e-39 1881 2.959e-36 13 organelle lumen amigo.geneontol...
GO GO:0005634 View Gene Set 7.257e-35 5198 6.925e-32 14 nucleus amigo.geneontol...
GO GO:0031981 View Gene Set 1.587e-34 1518 1.413e-31 15 nuclear lumen amigo.geneontol...
GO GO:0007049 View Gene Set 1.817e-30 1006 1.517e-27 16 cell cycle amigo.geneontol...
GO GO:0044444 View Gene Set 4.785e-30 5184 3.761e-27 17 cytoplasmic part amigo.geneontol...
GO GO:0032991 View Gene Set 8.702e-30 3237 6.459e-27 18 macromolecular complex amigo.geneontol...
GO GO:0043228 View Gene Set 1.159e-29 2690 7.745e-27 19 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 1.159e-29 2690 7.745e-27 19 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0000278 View Gene Set 1.186e-26 489 7.544e-24 21 mitotic cell cycle amigo.geneontol...
GO GO:0000280 View Gene Set 2.878e-25 276 1.671e-22 22 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 2.878e-25 276 1.671e-22 22 mitosis amigo.geneontol...
GO GO:0006996 View Gene Set 1.411e-24 1501 7.852e-22 24 organelle organization amigo.geneontol...
GO GO:0048285 View Gene Set 2.892e-24 286 1.546e-21 25 organelle fission amigo.geneontol...
GO GO:0022402 View Gene Set 6.18e-24 676 3.176e-21 26 cell cycle process amigo.geneontol...
GO GO:0000087 View Gene Set 8.98e-24 286 4.443e-21 27 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0005739 View Gene Set 9.533e-23 1274 4.549e-20 28 mitochondrion amigo.geneontol...
GO GO:0000279 View Gene Set 7.139e-22 406 3.289e-19 29 M phase amigo.geneontol...
GO GO:0005654 View Gene Set 1.3e-21 939 5.788e-19 30 nucleoplasm amigo.geneontol...
GO GO:0044237 View Gene Set 3.08e-21 7431 1.327e-18 31 cellular metabolic process amigo.geneontol...
GO GO:0044260 View Gene Set 3.304e-21 5699 1.379e-18 32 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0005515 View Gene Set 6.44e-21 8146 2.607e-18 33 protein binding amigo.geneontol...
GO GO:0016043 View Gene Set 8.523e-21 2937 3.349e-18 34 cellular component organization amigo.geneontol...
GO GO:0022403 View Gene Set 1.18e-20 522 4.504e-18 35 cell cycle phase amigo.geneontol...
GO GO:0051301 View Gene Set 3.135e-20 358 1.163e-17 36 cell division amigo.geneontol...
GO GO:0006396 View Gene Set 4.492e-20 578 1.622e-17 37 RNA processing amigo.geneontol...
GO GO:0006259 View Gene Set 6.107e-19 592 2.147e-16 38 DNA metabolic process amigo.geneontol...
GO GO:0030529 View Gene Set 8.094e-19 504 2.773e-16 39 ribonucleoprotein complex amigo.geneontol...
GO GO:0005730 View Gene Set 1.319e-18 734 4.405e-16 40 nucleolus amigo.geneontol...
GO GO:0043234 View Gene Set 2.77e-18 2680 9.025e-16 41 protein complex amigo.geneontol...
GO GO:0090304 View Gene Set 2.455e-17 3724 7.809e-15 42 nucleic acid metabolic process amigo.geneontol...
GO GO:0015630 View Gene Set 2.63e-17 587 8.17e-15 43 microtubule cytoskeleton amigo.geneontol...
GO GO:0007059 View Gene Set 5.493e-17 94 1.668e-14 44 chromosome segregation amigo.geneontol...
GO GO:0009987 View Gene Set 9.712e-17 11620 2.883e-14 45 cellular process amigo.geneontol...
GO GO:0003723 View Gene Set 5.343e-16 732 1.552e-13 46 RNA binding amigo.geneontol...
GO GO:0034641 View Gene Set 1.492e-15 4584 4.242e-13 47 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0006139 View Gene Set 2.857e-15 4294 7.951e-13 48 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0008152 View Gene Set 4.688e-15 8439 1.278e-12 49 metabolic process amigo.geneontol...
GO GO:0043170 View Gene Set 1.03e-14 6274 2.753e-12 50 macromolecule metabolic process amigo.geneontol...
GO GO:0006807 View Gene Set 1.179e-14 4698 3.028e-12 51 nitrogen compound metabolic process amigo.geneontol...
GO GO:0008380 View Gene Set 1.17e-14 300 3.028e-12 51 RNA splicing amigo.geneontol...
GO GO:0006281 View Gene Set 3.107e-14 309 7.831e-12 53 DNA repair amigo.geneontol...
GO GO:0000775 View Gene Set 1.018e-13 146 2.519e-11 54 chromosome centromeric region amigo.geneontol...
GO GO:0044085 View Gene Set 1.037e-13 1167 2.519e-11 55 cellular component biogenesis amigo.geneontol...
GO GO:0044238 View Gene Set 1.134e-13 7629 2.705e-11 56 primary metabolic process amigo.geneontol...
GO GO:0044429 View Gene Set 3.368e-13 619 7.893e-11 57 mitochondrial part amigo.geneontol...
GO GO:0005819 View Gene Set 3.777e-13 167 8.7e-11 58 spindle amigo.geneontol...
GO GO:0007017 View Gene Set 4.03e-13 281 9.125e-11 59 microtubule-based process amigo.geneontol...
GO GO:0000777 View Gene Set 5.147e-13 74 1.146e-10 60 condensed chromosome kinetochore amigo.geneontol...
GO GO:0005488 View Gene Set 1.157e-12 12334 2.535e-10 61 binding amigo.geneontol...
GO GO:0005694 View Gene Set 1.63e-12 507 3.513e-10 62 chromosome amigo.geneontol...
GO GO:0000776 View Gene Set 2.037e-12 92 4.319e-10 63 kinetochore amigo.geneontol...
GO GO:0010467 View Gene Set 2.146e-12 3806 4.479e-10 64 gene expression amigo.geneontol...
GO GO:0006974 View Gene Set 2.683e-12 412 5.515e-10 65 response to DNA damage stimulus amigo.geneontol...
GO GO:0016071 View Gene Set 2.728e-12 381 5.522e-10 66 mRNA metabolic process amigo.geneontol...
GO GO:0051726 View Gene Set 1.069e-11 451 2.131e-09 67 regulation of cell cycle amigo.geneontol...
GO GO:0000779 View Gene Set 1.765e-11 79 3.468e-09 68 condensed chromosome centromeric region amigo.geneontol...
GO GO:0006260 View Gene Set 2.095e-11 239 4.056e-09 69 DNA replication amigo.geneontol...
GO GO:0000793 View Gene Set 2.353e-11 136 4.492e-09 70 condensed chromosome amigo.geneontol...
GO GO:0006397 View Gene Set 3.463e-11 317 6.516e-09 71 mRNA processing amigo.geneontol...
GO GO:0044427 View Gene Set 4.248e-11 420 7.882e-09 72 chromosomal part amigo.geneontol...
GO GO:0051276 View Gene Set 4.391e-11 548 8.036e-09 73 chromosome organization amigo.geneontol...
GO GO:0044451 View Gene Set 4.684e-11 600 8.457e-09 74 nucleoplasm part amigo.geneontol...
GO GO:0005874 View Gene Set 5.626e-11 284 1.002e-08 75 microtubule amigo.geneontol...
GO GO:0022613 View Gene Set 7.64e-11 194 1.343e-08 76 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0000226 View Gene Set 2.27e-10 178 3.938e-08 77 microtubule cytoskeleton organization amigo.geneontol...
GO GO:0005815 View Gene Set 3.383e-10 277 5.78e-08 78 microtubule organizing center amigo.geneontol...
GO GO:0003676 View Gene Set 3.418e-10 2979 5.78e-08 78 nucleic acid binding amigo.geneontol...
GO GO:0022607 View Gene Set 3.591e-10 1043 5.997e-08 80 cellular component assembly amigo.geneontol...
GO GO:0031967 View Gene Set 9.645e-10 672 1.591e-07 81 organelle envelope amigo.geneontol...
GO GO:0032446 View Gene Set 1.303e-09 310 2.123e-07 82 protein modification by small protein conjugation amigo.geneontol...
GO GO:0005829 View Gene Set 1.321e-09 1323 2.127e-07 83 cytosol amigo.geneontol...
GO GO:0031975 View Gene Set 1.576e-09 685 2.507e-07 84 envelope amigo.geneontol...
GO GO:0044464 View Gene Set 2.517e-09 15066 3.957e-07 85 cell part amigo.geneontol...
GO GO:0005623 View Gene Set 2.976e-09 15067 4.623e-07 86 cell amigo.geneontol...
GO GO:0065003 View Gene Set 3.258e-09 763 5.003e-07 87 macromolecular complex assembly amigo.geneontol...
GO GO:0034470 View Gene Set 4.47e-09 193 6.786e-07 88 ncRNA processing amigo.geneontol...
GO GO:0005681 View Gene Set 5.905e-09 135 8.864e-07 89 spliceosomal complex amigo.geneontol...
GO GO:0006412 View Gene Set 7.773e-09 412 1.154e-06 90 translation amigo.geneontol...
GO GO:0043933 View Gene Set 8.298e-09 836 1.218e-06 91 macromolecular complex subunit organization amigo.geneontol...
GO GO:0000375 View Gene Set 8.425e-09 106 1.223e-06 92 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0016567 View Gene Set 8.73e-09 286 1.254e-06 93 protein ubiquitination amigo.geneontol...
GO GO:0034645 View Gene Set 1.201e-08 3529 1.707e-06 94 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0034660 View Gene Set 1.678e-08 236 2.36e-06 95 ncRNA metabolic process amigo.geneontol...
GO GO:0033554 View Gene Set 1.749e-08 698 2.434e-06 96 cellular response to stress amigo.geneontol...
GO GO:0000377 View Gene Set 2.703e-08 97 3.685e-06 97 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 2.703e-08 97 3.685e-06 97 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0005759 View Gene Set 2.896e-08 223 3.869e-06 99 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 2.896e-08 223 3.869e-06 99 mitochondrial lumen amigo.geneontol...
GO GO:0051340 View Gene Set 3.133e-08 85 4.145e-06 101 regulation of ligase activity amigo.geneontol...
GO GO:0007051 View Gene Set 3.229e-08 57 4.193e-06 102 spindle organization amigo.geneontol...
GO GO:0044267 View Gene Set 3.232e-08 2465 4.193e-06 102 cellular protein metabolic process amigo.geneontol...
GO GO:0003824 View Gene Set 3.474e-08 5198 4.462e-06 104 catalytic activity amigo.geneontol...
GO GO:0017111 View Gene Set 3.589e-08 733 4.567e-06 105 nucleoside-triphosphatase activity amigo.geneontol...
GO GO:0000070 View Gene Set 3.745e-08 37 4.72e-06 106 mitotic sister chromatid segregation amigo.geneontol...
GO GO:0044430 View Gene Set 3.801e-08 979 4.745e-06 107 cytoskeletal part amigo.geneontol...
GO GO:0070647 View Gene Set 4.617e-08 356 5.711e-06 108 protein modification by small protein conjugation or removal amigo.geneontol...
GO GO:0000819 View Gene Set 5.734e-08 38 7.028e-06 109 sister chromatid segregation amigo.geneontol...
GO GO:0005770 View Gene Set 7.076e-08 111 8.594e-06 110 late endosome amigo.geneontol...
GO GO:0031396 View Gene Set 7.674e-08 121 9.186e-06 111 regulation of protein ubiquitination amigo.geneontol...
GO GO:0016818 View Gene Set 7.701e-08 765 9.186e-06 111 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides amigo.geneontol...
GO GO:0004386 View Gene Set 7.915e-08 144 9.357e-06 113 helicase activity amigo.geneontol...
GO GO:0009059 View Gene Set 8.109e-08 3597 9.504e-06 114 macromolecule biosynthetic process amigo.geneontol...
GO GO:0031398 View Gene Set 8.826e-08 95 1.025e-05 115 positive regulation of protein ubiquitination amigo.geneontol...
GO GO:0031145 View Gene Set 9.76e-08 64 1.124e-05 116 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0016817 View Gene Set 1.028e-07 769 1.174e-05 117 hydrolase activity acting on acid anhydrides amigo.geneontol...
GO GO:0051438 View Gene Set 1.137e-07 82 1.287e-05 118 regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0016462 View Gene Set 1.171e-07 762 1.315e-05 119 pyrophosphatase activity amigo.geneontol...
GO GO:0051351 View Gene Set 1.185e-07 74 1.32e-05 120 positive regulation of ligase activity amigo.geneontol...
GO GO:0005740 View Gene Set 1.256e-07 444 1.386e-05 121 mitochondrial envelope amigo.geneontol...
GO GO:0046907 View Gene Set 1.411e-07 753 1.545e-05 122 intracellular transport amigo.geneontol...
GO GO:0000075 View Gene Set 1.828e-07 109 1.986e-05 123 cell cycle checkpoint amigo.geneontol...
GO GO:0016070 View Gene Set 2.356e-07 2596 2.538e-05 124 RNA metabolic process amigo.geneontol...
GO GO:0031090 View Gene Set 2.478e-07 1905 2.648e-05 125 organelle membrane amigo.geneontol...
GO GO:0044249 View Gene Set 3.325e-07 4326 3.526e-05 126 cellular biosynthetic process amigo.geneontol...
GO GO:0051436 View Gene Set 3.745e-07 62 3.94e-05 127 negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0005840 View Gene Set 4.317e-07 198 4.506e-05 128 ribosome amigo.geneontol...
GO GO:0022618 View Gene Set 4.416e-07 76 4.538e-05 129 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0051443 View Gene Set 4.388e-07 71 4.538e-05 129 positive regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0051439 View Gene Set 6.057e-07 68 6.178e-05 131 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0042254 View Gene Set 6.142e-07 130 6.216e-05 132 ribosome biogenesis amigo.geneontol...
GO GO:0009058 View Gene Set 6.426e-07 4436 6.455e-05 133 biosynthetic process amigo.geneontol...
GO GO:0010498 View Gene Set 8.775e-07 166 8.748e-05 134 proteasomal protein catabolic process amigo.geneontol...
GO GO:0007005 View Gene Set 8.873e-07 139 8.781e-05 135 mitochondrion organization amigo.geneontol...
GO GO:0051352 View Gene Set 9.659e-07 66 9.42e-05 136 negative regulation of ligase activity amigo.geneontol...
GO GO:0051444 View Gene Set 9.659e-07 66 9.42e-05 136 negative regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0034621 View Gene Set 1.312e-06 458 0.000127 138 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0006461 View Gene Set 1.582e-06 595 0.000151 139 protein complex assembly amigo.geneontol...
GO GO:0070271 View Gene Set 1.582e-06 595 0.000151 139 protein complex biogenesis amigo.geneontol...
GO GO:0031966 View Gene Set 1.759e-06 420 0.0001666 141 mitochondrial membrane amigo.geneontol...
GO GO:0007346 View Gene Set 1.797e-06 174 0.0001691 142 regulation of mitotic cell cycle amigo.geneontol...
GO GO:0051186 View Gene Set 2.068e-06 215 0.0001932 143 cofactor metabolic process amigo.geneontol...
GO GO:0008026 View Gene Set 2.107e-06 105 0.0001941 144 ATP-dependent helicase activity amigo.geneontol...
GO GO:0070035 View Gene Set 2.107e-06 105 0.0001941 144 purine NTP-dependent helicase activity amigo.geneontol...
GO GO:0005813 View Gene Set 2.142e-06 166 0.000196 146 centrosome amigo.geneontol...
GO GO:0043161 View Gene Set 2.175e-06 162 0.0001976 147 proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0000922 View Gene Set 2.464e-06 63 0.0002225 148 spindle pole amigo.geneontol...
GO GO:0034622 View Gene Set 2.525e-06 393 0.0002264 149 cellular macromolecular complex assembly amigo.geneontol...
GO GO:0005856 View Gene Set 2.7e-06 1410 0.0002405 150 cytoskeleton amigo.geneontol...
GO GO:0031902 View Gene Set 3.812e-06 64 0.0003372 151 late endosome membrane amigo.geneontol...
GO GO:0008094 View Gene Set 4.666e-06 61 0.0004101 152 DNA-dependent ATPase activity amigo.geneontol...
GO GO:0006302 View Gene Set 4.755e-06 65 0.0004152 153 double-strand break repair amigo.geneontol...
GO GO:0050000 View Gene Set 5.095e-06 17 0.0004391 154 chromosome localization amigo.geneontol...
GO GO:0051303 View Gene Set 5.095e-06 17 0.0004391 154 establishment of chromosome localization amigo.geneontol...
GO GO:0006310 View Gene Set 5.728e-06 130 0.0004895 156 DNA recombination amigo.geneontol...
GO GO:0006364 View Gene Set 5.752e-06 97 0.0004895 156 rRNA processing amigo.geneontol...
GO GO:0051656 View Gene Set 6.333e-06 71 0.0005355 158 establishment of organelle localization amigo.geneontol...
GO GO:0016604 View Gene Set 6.378e-06 198 0.0005359 159 nuclear body amigo.geneontol...
GO GO:0031397 View Gene Set 6.954e-06 78 0.0005807 160 negative regulation of protein ubiquitination amigo.geneontol...
GO GO:0016072 View Gene Set 7.059e-06 101 0.0005857 161 rRNA metabolic process amigo.geneontol...
GO GO:0006457 View Gene Set 7.163e-06 172 0.0005908 162 protein folding amigo.geneontol...
GO GO:0051437 View Gene Set 7.236e-06 64 0.0005931 163 positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0016887 View Gene Set 7.587e-06 339 0.0006181 164 ATPase activity amigo.geneontol...
GO GO:0005876 View Gene Set 1.152e-05 35 0.0009331 165 spindle microtubule amigo.geneontol...
GO GO:0031023 View Gene Set 1.197e-05 41 0.0009635 166 microtubule organizing center organization amigo.geneontol...
GO GO:0006325 View Gene Set 1.208e-05 425 0.0009661 167 chromatin organization amigo.geneontol...
GO GO:0010008 View Gene Set 1.457e-05 210 0.001151 168 endosome membrane amigo.geneontol...
GO GO:0044440 View Gene Set 1.457e-05 210 0.001151 168 endosomal part amigo.geneontol...
GO GO:0051052 View Gene Set 1.537e-05 132 0.001205 170 regulation of DNA metabolic process amigo.geneontol...
GO GO:0003735 View Gene Set 1.543e-05 158 0.001205 170 structural constituent of ribosome amigo.geneontol...
GO GO:0044437 View Gene Set 1.709e-05 138 0.001328 172 vacuolar part amigo.geneontol...
GO GO:0005774 View Gene Set 1.836e-05 131 0.001417 173 vacuolar membrane amigo.geneontol...
GO GO:0040001 View Gene Set 2.036e-05 9 0.001563 174 establishment of mitotic spindle localization amigo.geneontol...
GO GO:0000502 View Gene Set 2.47e-05 63 0.001885 175 proteasome complex amigo.geneontol...
GO GO:0000166 View Gene Set 2.544e-05 2257 0.001931 176 nucleotide binding amigo.geneontol...
GO GO:0016591 View Gene Set 2.593e-05 77 0.001957 177 DNA-directed RNA polymerase II holoenzyme amigo.geneontol...
GO GO:0000132 View Gene Set 2.641e-05 7 0.00196 178 establishment of mitotic spindle orientation amigo.geneontol...
GO GO:0006261 View Gene Set 2.64e-05 74 0.00196 178 DNA-dependent DNA replication amigo.geneontol...
GO GO:0051294 View Gene Set 2.641e-05 7 0.00196 178 establishment of spindle orientation amigo.geneontol...
GO GO:0006399 View Gene Set 2.853e-05 118 0.002106 181 tRNA metabolic process amigo.geneontol...
GO GO:0051297 View Gene Set 2.931e-05 40 0.00214 182 centrosome organization amigo.geneontol...
GO GO:0005743 View Gene Set 2.925e-05 305 0.00214 182 mitochondrial inner membrane amigo.geneontol...
GO GO:0006839 View Gene Set 3.147e-05 75 0.002272 184 mitochondrial transport amigo.geneontol...
GO GO:0019866 View Gene Set 3.131e-05 334 0.002272 184 organelle inner membrane amigo.geneontol...
GO GO:0031324 View Gene Set 3.38e-05 809 0.002428 186 negative regulation of cellular metabolic process amigo.geneontol...
GO GO:0033279 View Gene Set 3.801e-05 121 0.002715 187 ribosomal subunit amigo.geneontol...
GO GO:0042623 View Gene Set 4.482e-05 273 0.003185 188 ATPase activity coupled amigo.geneontol...
GO GO:0007018 View Gene Set 4.93e-05 116 0.003485 189 microtubule-based movement amigo.geneontol...
GO GO:0051188 View Gene Set 5.317e-05 112 0.003719 190 cofactor biosynthetic process amigo.geneontol...
GO GO:0051640 View Gene Set 5.296e-05 96 0.003719 190 organelle localization amigo.geneontol...
GO GO:0007052 View Gene Set 5.697e-05 22 0.003949 192 mitotic spindle organization amigo.geneontol...
GO GO:0042611 View Gene Set 5.705e-05 36 0.003949 192 MHC protein complex amigo.geneontol...
GO GO:0010605 View Gene Set 5.995e-05 827 0.004128 194 negative regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0019538 View Gene Set 6.375e-05 2935 0.004368 195 protein metabolic process amigo.geneontol...
GO GO:0003899 View Gene Set 6.474e-05 42 0.004391 196 DNA-directed RNA polymerase activity amigo.geneontol...
GO GO:0034062 View Gene Set 6.474e-05 42 0.004391 196 RNA polymerase activity amigo.geneontol...
GO GO:0006367 View Gene Set 6.712e-05 75 0.004529 198 transcription initiation from RNA polymerase II promoter amigo.geneontol...
GO GO:0005768 View Gene Set 7.589e-05 387 0.005095 199 endosome amigo.geneontol...
GO GO:0071103 View Gene Set 7.969e-05 140 0.005324 200 DNA conformation change amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr15q22 View Gene Set 7.768e-05 87 0.01266 1 Genes in cytogenetic band chr15q22 www.broad.mit.e...
Broad chr1p32 View Gene Set 5.881e-05 80 0.01266 1 Genes in cytogenetic band chr1p32 www.broad.mit.e...
Broad chr14q23 View Gene Set 0.0002262 62 0.02458 3 Genes in cytogenetic band chr14q23 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 8.631e-59 1180 2.065e-55 1 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 6.254e-52 1253 7.48e-49 2 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 9.245e-47 577 7.371e-44 3 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 2.668e-44 1353 1.595e-41 4 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 3.338e-42 243 1.597e-39 5 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 7.196e-42 859 2.869e-39 6 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 1.484e-41 744 5.072e-39 7 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 2.332e-38 589 6.974e-36 8 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 2.503e-36 485 6.652e-34 9 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 1.143e-34 757 2.735e-32 10 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 1.823e-34 537 3.634e-32 11 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 1.765e-34 435 3.634e-32 11 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 2.224e-34 630 4.092e-32 13 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 5.354e-34 920 9.148e-32 14 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 1.356e-33 1582 2.162e-31 15 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 1.402e-32 138 2.095e-30 16 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 4.704e-32 832 6.618e-30 17 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 8.374e-32 639 1.113e-29 18 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 1.352e-30 331 1.702e-28 19 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 3.854e-30 681 4.61e-28 20 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 1.116e-29 143 1.271e-27 21 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 1.52e-29 279 1.653e-27 22 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 4.689e-29 276 4.877e-27 23 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 5.483e-29 806 5.464e-27 24 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 6.029e-28 915 5.768e-26 25 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 6.541e-28 408 6.018e-26 26 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 7.952e-28 289 7.045e-26 27 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 1.343e-27 152 1.147e-25 28 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 9.244e-27 294 7.625e-25 29 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 7.341e-26 599 5.853e-24 30 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 9.16e-26 314 7.068e-24 31 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 1.12e-25 332 8.166e-24 32 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 1.127e-25 1045 8.166e-24 32 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 1.177e-24 410 8.281e-23 34 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad BENPORATH_PROLIFERATION View Gene Set 1.878e-24 140 1.283e-22 35 Set 'Proliferation Cluster': genes defined in human breast tumor expression data. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 9.267e-24 402 6.157e-22 36 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 2.131e-23 265 1.377e-21 37 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 2.889e-23 80 1.818e-21 38 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 4.751e-22 946 2.914e-20 39 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 5.329e-22 739 3.187e-20 40 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 2.865e-21 368 1.671e-19 41 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 3.971e-21 944 2.261e-19 42 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215 View Gene Set 6.153e-21 809 3.423e-19 43 Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h. www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES View Gene Set 2.446e-20 384 1.33e-18 44 Housekeeping genes identified as expressed across 19 normal tissues. www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN View Gene Set 2.629e-20 431 1.397e-18 45 Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 3.117e-20 241 1.621e-18 46 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 3.591e-20 825 1.828e-18 47 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 4.053e-20 201 2.02e-18 48 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 4.248e-20 415 2.074e-18 49 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 2.633e-19 180 1.26e-17 50 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 2.914e-19 62 1.367e-17 51 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 4.327e-19 666 1.99e-17 52 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE View Gene Set 6.036e-19 315 2.724e-17 53 Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 8.552e-19 351 3.719e-17 54 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 8.438e-19 92 3.719e-17 54 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 1.158e-18 1209 4.946e-17 56 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP View Gene Set 1.354e-18 93 5.682e-17 57 Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 2.837e-18 532 1.17e-16 58 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 3.439e-18 437 1.394e-16 59 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 8.209e-18 475 3.273e-16 60 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 9.368e-18 370 3.674e-16 61 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 1.749e-17 768 6.748e-16 62 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 2.314e-17 139 8.786e-16 63 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 5.283e-17 138 1.975e-15 64 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP View Gene Set 7.108e-17 100 2.616e-15 65 Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959]. www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP View Gene Set 8.933e-17 144 3.238e-15 66 Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS View Gene Set 9.707e-17 855 3.465e-15 67 Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 1.235e-16 290 4.343e-15 68 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP View Gene Set 1.496e-16 135 5.187e-15 69 Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN View Gene Set 2.523e-16 444 8.621e-15 70 Genes down-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 2.897e-16 367 9.759e-15 71 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 5.764e-16 178 1.915e-14 72 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 6.641e-16 1641 2.176e-14 73 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad BASSO_B_LYMPHOCYTE_NETWORK View Gene Set 7.008e-16 136 2.265e-14 74 Genes which comprise the top 1% of highly interconnected genes (major hubs) that account for most of gene interactions in the reconstructed regulatory networks from expression profiles in B lymphocytes. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 8.808e-16 184 2.809e-14 75 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 1.277e-15 203 4.018e-14 76 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 1.561e-15 657 4.848e-14 77 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 1.886e-15 436 5.784e-14 78 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP View Gene Set 3.74e-15 43 1.132e-13 79 Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 4.594e-15 165 1.374e-13 80 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 6.561e-15 53 1.938e-13 81 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 7.91e-15 96 2.307e-13 82 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP View Gene Set 8.504e-15 135 2.451e-13 83 Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360]. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 8.72e-15 158 2.483e-13 84 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_DN View Gene Set 1.102e-14 329 3.102e-13 85 Genes down-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 1.181e-14 571 3.284e-13 86 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 1.701e-14 303 4.676e-13 87 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 2.675e-14 86 7.272e-13 88 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 3.405e-14 758 9.152e-13 89 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 5.66e-14 269 1.504e-12 90 Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN View Gene Set 8.552e-14 76 2.248e-12 91 Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 9.856e-14 418 2.562e-12 92 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 1.261e-13 711 3.244e-12 93 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 1.288e-13 182 3.276e-12 94 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP View Gene Set 1.493e-13 80 3.76e-12 95 Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages. www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE View Gene Set 1.55e-13 36 3.862e-12 96 Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation. www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN View Gene Set 2.021e-13 66 4.983e-12 97 Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 2.965e-13 406 7.238e-12 98 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 3.262e-13 704 7.881e-12 99 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN View Gene Set 4.552e-13 53 1.089e-11 100 Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019]. www.broad.mit.e...
Broad GRUETZMANN_PANCREATIC_CANCER_UP View Gene Set 4.647e-13 345 1.101e-11 101 Genes up-regulated in pancreatic ductal adenocarcinoma (PDAC) identified in a meta analysis across four independent studies. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 4.877e-13 783 1.144e-11 102 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 6.469e-13 283 1.502e-11 103 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN View Gene Set 6.832e-13 131 1.571e-11 104 Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 1.313e-12 517 2.99e-11 105 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 1.729e-12 212 3.901e-11 106 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 1.769e-12 187 3.955e-11 107 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP View Gene Set 1.809e-12 452 4.006e-11 108 Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 1.855e-12 869 4.071e-11 109 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP View Gene Set 2.312e-12 52 5.027e-11 110 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 2.926e-12 469 6.304e-11 111 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 3.301e-12 155 7.05e-11 112 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 4.339e-12 213 9.186e-11 113 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad LIAO_METASTASIS View Gene Set 7.749e-12 513 1.626e-10 114 Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN View Gene Set 8.898e-12 123 1.851e-10 115 Genes highly expressed in hepatocellular carcinoma with poor survival. www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN View Gene Set 1.07e-11 52 2.207e-10 116 Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 1.234e-11 427 2.524e-10 117 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_BASAL_VS_LULMINAL View Gene Set 1.245e-11 317 2.525e-10 118 Genes which best discriminated between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: basal (ESR1- AR-) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_UP View Gene Set 1.461e-11 116 2.937e-10 119 Up-regulated genes in MDA-MB-435 cells (breast cancer) undergoing G2/M arrest after treatment with 2-methoxyestradiol (2ME2)[PubChem=1573]. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_UP View Gene Set 2.232e-11 328 4.45e-10 120 Genes up-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 2.454e-11 171 4.851e-10 121 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad CHANG_CYCLING_GENES View Gene Set 2.517e-11 49 4.935e-10 122 Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature. www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 2.607e-11 164 5.07e-10 123 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 3.935e-11 583 7.5e-10 124 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 3.929e-11 504 7.5e-10 124 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP View Gene Set 3.951e-11 388 7.5e-10 124 Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_UP View Gene Set 4.058e-11 283 7.644e-10 127 Genes up-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 4.294e-11 509 8.024e-10 128 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER View Gene Set 5.159e-11 60 9.566e-10 129 Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database. www.broad.mit.e...
Broad WU_APOPTOSIS_BY_CDKN1A_VIA_TP53 View Gene Set 8.512e-11 36 1.566e-09 130 Genes downstream of both CDKN1A and TP53 [Gene ID=1026 7157] in 2774qw1 cells (ovarian cancer). www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP View Gene Set 1.575e-10 263 2.876e-09 131 Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad KAAB_FAILED_HEART_ATRIUM_DN View Gene Set 1.6e-10 139 2.899e-09 132 Genes down-regulated in atria of failing hearts (DCM and ICM) compared to healthy controls. www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP View Gene Set 1.624e-10 192 2.92e-09 133 Genes enriched in embryonic neural and hematopoietic stem cells. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 1.811e-10 205 3.232e-09 134 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad YU_MYC_TARGETS_UP View Gene Set 2.446e-10 37 4.333e-09 135 Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609]. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 2.886e-10 127 5.076e-09 136 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN View Gene Set 3.841e-10 43 6.707e-09 137 Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757]. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN View Gene Set 4.234e-10 60 7.339e-09 138 Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701]. www.broad.mit.e...
Broad STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN View Gene Set 4.53e-10 437 7.796e-09 139 Genes down-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_DN View Gene Set 4.968e-10 200 8.487e-09 140 Genes down-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 7.582e-10 359 1.286e-08 141 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 7.727e-10 436 1.302e-08 142 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN View Gene Set 8.148e-10 104 1.363e-08 143 Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years). www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP View Gene Set 1.153e-09 195 1.916e-08 144 Genes up-regulated in monocytes by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN View Gene Set 1.329e-09 42 2.178e-08 145 Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037]. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 1.327e-09 353 2.178e-08 145 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 2.075e-09 471 3.377e-08 147 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 2.164e-09 317 3.479e-08 148 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 2.167e-09 399 3.479e-08 148 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN View Gene Set 2.298e-09 22 3.665e-08 150 Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161]. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP View Gene Set 2.816e-09 178 4.461e-08 151 Genes up-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP View Gene Set 3.18e-09 87 5.004e-08 152 Top 100 probe sets contrubuting to the positive side of the 2nd principal component; associated with adipocytic differentiation. www.broad.mit.e...
Broad KAN_RESPONSE_TO_ARSENIC_TRIOXIDE View Gene Set 3.667e-09 117 5.733e-08 153 Genes changed in U373-MG cells (malignant glioma) upon treatment with arsenic trioxide [PubChem=14888] a chemical that can cause autophagic cell death. www.broad.mit.e...
Broad SASAKI_ADULT_T_CELL_LEUKEMIA View Gene Set 3.805e-09 137 5.91e-08 154 Genes up-regulated in adult T-cell leukemia (ATL) cells compared to T lymphocytes from healthy controls. www.broad.mit.e...
Broad ALONSO_METASTASIS_UP View Gene Set 4.336e-09 152 6.691e-08 155 Up-regulated genes in melanoma tumous that developed metastatic disease compared to primary melanoma that did not. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN View Gene Set 4.639e-09 256 7.113e-08 156 Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 5.048e-09 92 7.643e-08 157 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_DN View Gene Set 5.046e-09 607 7.643e-08 157 Transcripts depleted from pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP View Gene Set 6.316e-09 57 9.502e-08 159 DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not. www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN View Gene Set 6.989e-09 140 1.041e-07 160 Genes down-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 7.052e-09 532 1.041e-07 160 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_ESR1_DN View Gene Set 7.019e-09 217 1.041e-07 160 Down-regulated genes from the optimal set of 550 markers discriminating breast cancer samples by ESR1 [Gene ID=2099] expression: ER(+) vs ER(-) tumors. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 7.177e-09 508 1.049e-07 163 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 7.193e-09 329 1.049e-07 163 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP View Gene Set 7.677e-09 129 1.113e-07 165 Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad LY_AGING_OLD_DN View Gene Set 8.782e-09 47 1.265e-07 166 Genes up-regulated in fibroblasts from old individuals compared to those from young donors. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_SCC_UP View Gene Set 9.274e-09 80 1.328e-07 167 Genes up-regulated in SCC12B2 cells (squamous cell carcinoma) by UV-B irradiation. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN View Gene Set 1.04e-08 317 1.48e-07 168 The postradiation tumor escape signature: genes down-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad WINTER_HYPOXIA_UP View Gene Set 1.07e-08 85 1.514e-07 169 Genes up-regulated in head and neck tumor samples which clustered around known hypoxia genes. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1 View Gene Set 1.519e-08 491 2.138e-07 170 The 'group 1 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2 View Gene Set 1.55e-08 33 2.168e-07 171 Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples. www.broad.mit.e...
Broad WANG_CLIM2_TARGETS_DN View Gene Set 1.744e-08 166 2.412e-07 172 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express a dominant negative form of CLIM2 [Gene ID=8861] by a Tet Off system. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 1.739e-08 140 2.412e-07 172 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_DN View Gene Set 1.8e-08 487 2.475e-07 174 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_CHEMOTAXIS_DN View Gene Set 2.005e-08 430 2.741e-07 175 Transcripts depleted in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988]. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 2.144e-08 301 2.914e-07 176 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP View Gene Set 2.204e-08 539 2.978e-07 177 Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_14HR_DN View Gene Set 2.384e-08 289 3.204e-07 178 Genes down-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 14 h time point that were not down-regulated at the previous time point 12 h. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 2.626e-08 368 3.509e-07 179 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad LIU_CMYB_TARGETS_UP View Gene Set 2.745e-08 158 3.627e-07 180 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad GEORGES_CELL_CYCLE_MIR192_TARGETS View Gene Set 2.738e-08 59 3.627e-07 180 Experimentally validated direct targets of MIR192 [Gene ID=406967] microRNA; MIR192 caused cell cycle arrest in HCT116 cells (colon cancer). www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_UP View Gene Set 2.79e-08 116 3.666e-07 182 Genes up-regulated in transformed NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845]) vs normal cells. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 3.037e-08 124 3.969e-07 183 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad LAIHO_COLORECTAL_CANCER_SERRATED_UP View Gene Set 3.287e-08 108 4.274e-07 184 Genes up-regulated in serrated vs conventional colorectal carcinoma (CRC) samples. www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN View Gene Set 3.363e-08 15 4.348e-07 185 Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 3.474e-08 420 4.467e-07 186 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_UP View Gene Set 3.944e-08 629 5.045e-07 187 Genes up-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP View Gene Set 4.152e-08 53 5.283e-07 188 The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele. www.broad.mit.e...
Broad PROVENZANI_METASTASIS_DN View Gene Set 4.257e-08 135 5.388e-07 189 Genes down-regulated in polysomal and total RNA samples from SW480 cells (primary colorectal carcinoma CRC) compared to the SW620 cells (lymph node metastasis from the same individual). www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES View Gene Set 4.3e-08 128 5.413e-07 190 Genes involved in DNA replication compiled manually by the authors. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN View Gene Set 5.045e-08 732 6.318e-07 191 Genes down-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 5.524e-08 1375 6.882e-07 192 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 5.579e-08 433 6.915e-07 193 Mitochondrial genes www.broad.mit.e...
Broad BHATTACHARYA_EMBRYONIC_STEM_CELL View Gene Set 5.725e-08 76 7.059e-07 194 The 'stemnes' signature: genes up-regulated and common to 6 human embryonic stem cell lines tested. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_BY_DMOG_UP View Gene Set 5.765e-08 125 7.071e-07 195 Genes up-regulated in MCF7 cells (breast cancer) treated with hypoxia mimetic DMOG [PubChem=3080614]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13 View Gene Set 5.847e-08 158 7.136e-07 196 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 13. www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS View Gene Set 6.07e-08 19 7.37e-07 197 RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1. www.broad.mit.e...
Broad ALCALAY_AML_BY_NPM1_LOCALIZATION_DN View Gene Set 6.301e-08 179 7.612e-07 198 Genes changed in acute myeloid leukemia (AML) with respect to cellular localization of NPM1 [Gene ID=4869]: cytoplasmic vs. nucleolar. www.broad.mit.e...
Broad REN_BOUND_BY_E2F View Gene Set 7.071e-08 47 8.5e-07 199 Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay. www.broad.mit.e...
Broad OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 7.302e-08 114 8.733e-07 200 Genes up-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_RANMS_PATHWAY View Gene Set 1.175e-05 10 0.002551 1 Role of Ran in mitotic spindle regulation www.broad.mit.e...
Broad BIOCARTA_CELLCYCLE_PATHWAY View Gene Set 0.0005296 23 0.03831 2 Cyclins and Cell Cycle Regulation www.broad.mit.e...
Broad BIOCARTA_ATRBRCA_PATHWAY View Gene Set 0.000485 21 0.03831 2 Role of BRCA1 BRCA2 and ATR in Cancer Susceptibility www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_CELL_CYCLE View Gene Set 2.168e-11 128 4.033e-09 1 Cell cycle www.broad.mit.e...
Broad KEGG_SPLICEOSOME View Gene Set 3.493e-08 118 3.248e-06 2 Spliceosome www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 7.532e-08 98 4.67e-06 3 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR View Gene Set 1.164e-06 35 5.414e-05 4 Base excision repair www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 1.751e-06 44 6.513e-05 5 Nucleotide excision repair www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 1.28e-05 36 0.0003967 6 DNA replication www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 7.098e-05 138 0.001886 7 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_RNA_POLYMERASE View Gene Set 0.0001098 29 0.002552 8 RNA polymerase www.broad.mit.e...
Broad KEGG_PATHOGENIC_ESCHERICHIA_COLI_INFECTION View Gene Set 0.0002249 59 0.004647 9 Pathogenic Escherichia coli infection www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR View Gene Set 0.0008302 23 0.01544 10 Mismatch repair www.broad.mit.e...
Broad KEGG_LYSOSOME View Gene Set 0.0009403 122 0.0159 11 Lysosome www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS View Gene Set 0.001467 41 0.02273 12 Aminoacyl-tRNA biosynthesis www.broad.mit.e...
Broad KEGG_ARGININE_AND_PROLINE_METABOLISM View Gene Set 0.001661 54 0.02341 13 Arginine and proline metabolism www.broad.mit.e...
Broad KEGG_OOCYTE_MEIOSIS View Gene Set 0.001762 114 0.02341 13 Oocyte meiosis www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION View Gene Set 0.002202 28 0.02731 15 Homologous recombination www.broad.mit.e...
Broad KEGG_PURINE_METABOLISM View Gene Set 0.003072 157 0.0338 16 Purine metabolism www.broad.mit.e...
Broad KEGG_GLUTATHIONE_METABOLISM View Gene Set 0.00309 50 0.0338 16 Glutathione metabolism www.broad.mit.e...
Broad KEGG_PROTEIN_EXPORT View Gene Set 0.003307 24 0.03418 18 Protein export www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION View Gene Set 0.003781 59 0.03613 19 RNA degradation www.broad.mit.e...
Broad KEGG_PROTEASOME View Gene Set 0.003961 48 0.03613 19 Proteasome www.broad.mit.e...
Broad KEGG_SMALL_CELL_LUNG_CANCER View Gene Set 0.00408 84 0.03613 19 Small cell lung cancer www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 1.023e-33 306 4.399e-31 1 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 2.135e-18 157 4.591e-16 2 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 1.028e-12 92 1.473e-10 3 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 2.789e-11 110 2.998e-09 4 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 4.244e-11 84 3.041e-09 5 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 4.179e-11 103 3.041e-09 5 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 6.306e-11 102 3.874e-09 7 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 8.538e-11 415 4.589e-09 8 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 7.026e-10 89 3.357e-08 9 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 5.883e-09 128 2.53e-07 10 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION View Gene Set 1.665e-08 72 5.868e-07 11 Genes involved in Centrosome maturation www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 1.774e-08 102 5.868e-07 11 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 1.584e-08 183 5.868e-07 11 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 4.718e-08 103 1.449e-06 14 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 5.886e-08 124 1.687e-06 15 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 9.853e-08 142 2.648e-06 16 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES View Gene Set 1.733e-07 62 4.383e-06 17 Genes involved in Loss of Nlp from mitotic centrosomes www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 3.483e-07 90 8.32e-06 18 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 5.187e-07 95 1.174e-05 19 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 6.099e-07 76 1.192e-05 20 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE View Gene Set 5.649e-07 137 1.192e-05 20 Genes involved in Influenza Life Cycle www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 5.938e-07 63 1.192e-05 20 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE View Gene Set 9.226e-07 71 1.725e-05 23 Genes involved in Regulation of APC/C activators between G1/S and early anaphase www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 9.863e-07 97 1.767e-05 24 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A View Gene Set 1.061e-06 63 1.825e-05 25 Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 1.435e-06 33 2.286e-05 26 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 1.39e-06 49 2.286e-05 26 Genes involved in Nucleotide Excision Repair www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 1.867e-06 43 2.867e-05 28 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 1.967e-06 61 2.917e-05 29 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 2.412e-06 37 3.457e-05 30 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER View Gene Set 4.175e-06 33 5.791e-05 31 Genes involved in Global Genomic NER (GG-NER) www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 4.544e-06 50 6.105e-05 32 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS View Gene Set 7.054e-06 215 9.192e-05 33 Genes involved in Metabolism of proteins www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER View Gene Set 8.597e-06 44 0.0001087 34 Genes involved in Transcription-coupled NER (TC-NER) www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION View Gene Set 1.327e-05 15 0.000163 35 Genes involved in Cyclin A1 associated events during G2/M transition www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 1.409e-05 31 0.0001683 36 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX View Gene Set 2.005e-05 32 0.000233 37 Genes involved in Formation of the Early Elongation Complex www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 2.161e-05 28 0.0002446 38 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY View Gene Set 4.276e-05 38 0.0004715 39 Genes involved in mRNA Splicing - Minor Pathway www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S View Gene Set 4.439e-05 22 0.0004772 40 Genes involved in E2F transcriptional targets at G1/S www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ View Gene Set 4.806e-05 58 0.000504 41 Genes involved in Cyclin E associated events during G1/S transition www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX View Gene Set 5.492e-05 52 0.0005378 42 Genes involved in CDT1 association with the CDC6:ORC:origin complex www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_ELONGATION View Gene Set 5.455e-05 41 0.0005378 42 Genes involved in HIV-1 Transcription Elongation www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE View Gene Set 5.503e-05 47 0.0005378 42 Genes involved in Regulation of ornithine decarboxylase (ODC) www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 6.549e-05 120 0.0006258 45 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC View Gene Set 6.807e-05 57 0.0006363 46 Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION View Gene Set 7.931e-05 83 0.0007256 47 Genes involved in RNA Polymerase II Transcription www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21 View Gene Set 0.0001011 52 0.0009061 48 Genes involved in SCF(Skp2)-mediated degradation of p2721 www.broad.mit.e...
Broad REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION View Gene Set 0.0001098 100 0.0009636 49 Genes involved in Influenza Viral RNA Transcription and Replication www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 0.0001304 32 0.001122 50 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 0.0001427 30 0.001204 51 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE View Gene Set 0.0001507 26 0.001223 52 Genes involved in RNA Pol II CTD phosphorylation and interaction with CE www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME View Gene Set 0.0001503 59 0.001223 52 Genes involved in Transcription of the HIV genome www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 0.0001553 188 0.001237 54 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 0.0001654 42 0.001293 55 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_G1_PHASE View Gene Set 0.0001979 16 0.0015 56 Genes involved in G1 Phase www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION View Gene Set 0.0001988 20 0.0015 56 Genes involved in Mitochondrial tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 0.0002631 31 0.00195 58 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_TERMINATION View Gene Set 0.000328 21 0.002351 59 Genes involved in RNA PolymeraseTranscription Termination www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 0.0003274 120 0.002351 59 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 0.0003982 30 0.002807 61 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT View Gene Set 0.0004267 23 0.002912 62 Genes involved in Abortive elongation of HIV-1 transcript in the absence of Tat www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 0.0004262 31 0.002912 62 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 0.000454 29 0.00305 64 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE View Gene Set 0.0005324 15 0.003522 65 Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX View Gene Set 0.0005784 18 0.003768 66 Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE View Gene Set 0.0007183 20 0.00461 67 Genes involved in RNA Polymerase I Promoter Escape www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_AMINO_ACIDS View Gene Set 0.0007708 162 0.004874 68 Genes involved in Metabolism of amino acids www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53 View Gene Set 0.000785 46 0.004892 69 Genes involved in Stabilization of p53 www.broad.mit.e...
Broad REACTOME_POST_CHAPERONIN_TUBULIN_FOLDING_PATHWAY View Gene Set 0.0009944 19 0.006108 70 Genes involved in Post-chaperonin tubulin folding pathway www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS View Gene Set 0.001014 20 0.00614 71 Genes involved in Lagging Strand Synthesis www.broad.mit.e...
Broad REACTOME_FORMATION_OF_TUBULIN_FOLDING_INTERMEDIATES_BY_CCT_TRIC View Gene Set 0.00106 22 0.006329 72 Genes involved in Formation of tubulin folding intermediates by CCT/TriC www.broad.mit.e...
Broad REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC View Gene Set 0.001083 28 0.006381 73 Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 View Gene Set 0.001161 48 0.006747 74 Genes involved in SCF-beta-TrCP mediated degradation of Emi1 www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 0.00124 29 0.007107 75 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_INITIATION View Gene Set 0.001298 39 0.007259 76 Genes involved in HIV-1 Transcription Initiation www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION View Gene Set 0.0013 34 0.007259 76 Genes involved in RNA PolymeraseChain Elongation www.broad.mit.e...
Broad REACTOME_BASE_EXCISION_REPAIR View Gene Set 0.001334 18 0.007356 78 Genes involved in Base Excision Repair www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS View Gene Set 0.001396 18 0.007599 79 Genes involved in MicroRNA biogenesis www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 0.001801 77 0.009683 80 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC View Gene Set 0.002037 17 0.01081 81 Genes involved in Phosphorylation of the APC/C www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 0.002194 11 0.0115 82 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_GG_NER View Gene Set 0.002382 20 0.01234 83 Genes involved in Dual incision reaction in GG-NER www.broad.mit.e...
Broad REACTOME_CONVERSION_FROM_APC_CDC20_TO_APC_CDH1_IN_LATE_ANAPHASE View Gene Set 0.002425 17 0.01241 84 Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase www.broad.mit.e...
Broad REACTOME_APOPTOSIS View Gene Set 0.002526 129 0.01263 85 Genes involved in Apoptosis www.broad.mit.e...
Broad REACTOME_MRNA_PROCESSING View Gene Set 0.002507 32 0.01263 85 Genes involved in mRNA Processing www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_INITIATION View Gene Set 0.002555 24 0.01263 85 Genes involved in RNA PolymeraseTranscription Initiation www.broad.mit.e...
Broad REACTOME_PEPTIDE_CHAIN_ELONGATION View Gene Set 0.00267 84 0.01305 88 Genes involved in Peptide chain elongation www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT View Gene Set 0.002955 106 0.01428 89 Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE View Gene Set 0.003081 43 0.01472 90 Genes involved in p53-Independent DNA Damage Response www.broad.mit.e...
Broad REACTOME_FURTHER_PLATELET_RELEASATE View Gene Set 0.003199 24 0.01512 91 Genes involved in Further platelet releasate www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_BH3_ONLY_PROTEINS View Gene Set 0.003472 16 0.016 92 Genes involved in Activation of BH3-only proteins www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT View Gene Set 0.003476 58 0.016 92 Genes involved in Signaling by Wnt www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION View Gene Set 0.003498 40 0.016 92 Genes involved in tRNA Aminoacylation www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM View Gene Set 0.003569 22 0.01615 95 Genes involved in Pyrimidine metabolism www.broad.mit.e...
Broad REACTOME_TAT_MEDIATED_HIV1_ELONGATION_ARREST_AND_RECOVERY View Gene Set 0.00373 30 0.01671 96 Genes involved in Tat-mediated HIV-1 elongation arrest and recovery www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_TC_NER View Gene Set 0.003793 28 0.01681 97 Genes involved in Dual incision reaction in TC-NER www.broad.mit.e...
Broad REACTOME_VIRAL_MESSENGER_RNA_SYNTHESIS View Gene Set 0.003891 14 0.01707 98 Genes involved in Viral Messenger RNA Synthesis www.broad.mit.e...
Broad REACTOME_VIRAL_MRNA_TRANSLATION View Gene Set 0.004022 84 0.01747 99 Genes involved in Viral mRNA Translation www.broad.mit.e...
Broad REACTOME_CDC6_ASSOCIATION_WITH_THE_ORC:ORIGIN_COMPLEX View Gene Set 0.004086 11 0.01757 100 Genes involved in CDC6 association with the ORC:origin complex www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND View Gene Set 0.004474 10 0.01905 101 Genes involved in Removal of the Flap Intermediate from the C-strand www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS View Gene Set 0.004846 95 0.02043 102 Genes involved in Formation of a pool of free 40S subunits www.broad.mit.e...
Broad REACTOME_CHAPERONIN_MEDIATED_PROTEIN_FOLDING View Gene Set 0.005051 50 0.02109 103 Genes involved in Chaperonin-mediated protein folding www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G View Gene Set 0.00511 47 0.02113 104 Genes involved in Vif-mediated degradation of APOBEC3G www.broad.mit.e...
Broad REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B View Gene Set 0.005625 18 0.02304 105 Genes involved in APC/C:Cdc20 mediated degradation of Cyclin B www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_CHAPERONES_BY_IRE1_ALPHA View Gene Set 0.006382 10 0.02589 106 Genes involved in Activation of Chaperones by IRE1alpha www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 0.007649 71 0.03065 107 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN View Gene Set 0.007801 29 0.03065 107 Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION View Gene Set 0.00784 120 0.03065 107 Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 0.00782 45 0.03065 107 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_POLYMERASE_SWITCHING View Gene Set 0.008628 14 0.03343 111 Genes involved in Polymerase switching www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES View Gene Set 0.009367 119 0.03596 112 Genes involved in Metabolism of carbohydrates www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_DNA_PATCH_CONTAINING_ABASIC_RESIDUE View Gene Set 0.01033 15 0.0393 113 Genes involved in Removal of DNA patch containing abasic residue www.broad.mit.e...
Broad REACTOME_DIABETES_PATHWAYS View Gene Set 0.01128 383 0.04256 114 Genes involved in Diabetes pathways www.broad.mit.e...
Broad REACTOME_RECRUITMENT_OF_NUMA_TO_MITOTIC_CENTROSOMES View Gene Set 0.01265 11 0.0473 115 Genes involved in Recruitment of NuMA to mitotic centrosomes www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GTGCCTT MIR-506 View Gene Set 2.086e-05 605 0.00461 1 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad CTTTGTA MIR-524 View Gene Set 0.0001168 375 0.01291 2 Targets of MicroRNA CTTTGTA MIR-524 www.broad.mit.e... MIR-524...
Broad TGCCTTA MIR-124A View Gene Set 0.0002255 471 0.01661 3 Targets of MicroRNA TGCCTTA MIR-124A www.broad.mit.e... MIR-124A...
Broad CACTTTG MIR-520G MIR-520H View Gene Set 0.0003829 206 0.02116 4 Targets of MicroRNA CACTTTG MIR-520G MIR-520H www.broad.mit.e... MIR-520G... MIR-520H...
Broad AGCACTT MIR-93 MIR-302A MIR-302B MIR-302C MIR-302D MIR-372 MIR-373 MIR-520E MIR-520A MIR-526B MIR-520B MIR-520C MIR-520D View Gene Set 0.0008577 281 0.03773 5 Targets of MicroRNA AGCACTT MIR-93 MIR-302A MIR-302B MIR-302C MIR-302D MIR-372 MIR-373 MIR-520E MIR-520A MIR-526B MIR-520B MIR-520C MIR-520D www.broad.mit.e... MIR-93... MIR-302A... MIR-302B... MIR-302C... MIR-302D... MIR-372... MIR-373... MIR-520E... MIR-520A... MIR-526B... MIR-520B... MIR-520C... MIR-520D...
Broad CTAGGAA MIR-384 View Gene Set 0.001024 53 0.03773 5 Targets of MicroRNA CTAGGAA MIR-384 www.broad.mit.e... MIR-384...
Broad AAGCACT MIR-520F View Gene Set 0.001422 198 0.04489 7 Targets of MicroRNA AAGCACT MIR-520F www.broad.mit.e... MIR-520F...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SCGGAAGY_V$ELK1_02 View Gene Set 7.34e-13 784 4.514e-10 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6 View Gene Set 1.962e-11 2120 6.033e-09 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad CACGTG_V$MYC_Q2 View Gene Set 1.384e-08 734 2.837e-06 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad V$GABP_B View Gene Set 1.742e-06 162 0.0002678 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B View Gene Set 4.188e-06 512 0.0005151 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 5.663e-06 580 0.0005804 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$USF_01 View Gene Set 1.212e-05 186 0.001065 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ELK1_02 View Gene Set 6.695e-05 170 0.005147 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNCCGGAARTNN which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad V$NRF2_01 View Gene Set 8.974e-05 166 0.006132 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif ACCGGAAGNG which matches annotation for GABPB1: GA binding protein transcription factor beta subunit 1. www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01 View Gene Set 0.0005002 830 0.02796 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.0004552 289 0.02796 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$CREB_02 View Gene Set 0.0005785 185 0.02965 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGNTGACGTNN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 0.0006634 165 0.03138 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad ACTAYRNNNCCCR_UNKNOWN View Gene Set 0.0007394 293 0.03248 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACTAYRNNNCCCR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NFMUE1_Q6 View Gene Set 0.0008991 175 0.03686 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor www.broad.mit.e...
Broad ACTWSNACTNY_UNKNOWN View Gene Set 0.001361 60 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACTWSNACTNY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SREBP1_01 View Gene Set 0.001445 133 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad V$E2F_Q4 View Gene Set 0.001463 166 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 0.001431 167 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad GCGNNANTTCC_UNKNOWN View Gene Set 0.001198 85 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGNNANTTCC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$YY1_Q6 View Gene Set 0.001259 166 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad TMTCGCGANR_UNKNOWN View Gene Set 0.00125 100 0.0409 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TMTCGCGANR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ARNT_01 View Gene Set 0.001539 196 0.04116 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...
Broad V$MYCMAX_01 View Gene Set 0.001662 189 0.04259 24 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GNF2_CDC20 View Gene Set 1.273e-23 52 1.812e-21 1 Neighborhood of CDC20 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 1.173e-23 56 1.812e-21 1 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 4.498e-24 53 1.812e-21 1 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 5.73e-23 62 6.117e-21 4 Neighborhood of CCNA2 www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 2.792e-22 82 2.384e-20 5 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 1.044e-21 56 7.427e-20 6 Neighborhood of CDC2 www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 3.136e-21 62 1.913e-19 7 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 1.322e-19 256 7.058e-18 8 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 3.209e-19 316 1.37e-17 9 Neighborhood of RAD23A www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 3.04e-19 43 1.37e-17 9 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 1.306e-18 75 5.068e-17 11 Neighborhood of SMC4L1 www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 1.555e-18 256 5.534e-17 12 Neighborhood of CSNK2B www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 2.449e-16 50 8.045e-15 13 Neighborhood of MCM4 www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 4.346e-16 57 1.325e-14 14 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 5.93e-16 37 1.688e-14 15 Neighborhood of CENPE www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 8.361e-16 35 2.231e-14 16 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 1.468e-15 247 3.686e-14 17 Neighborhood of SOD1 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 3.357e-15 36 7.964e-14 18 Neighborhood of RRM2 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 3.751e-15 46 8.43e-14 19 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 9.349e-15 155 1.996e-13 20 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 1.262e-14 174 2.565e-13 21 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_TTK View Gene Set 1.704e-14 34 3.308e-13 22 Neighborhood of TTK www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 6.299e-14 49 1.169e-12 23 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 9.764e-14 256 1.737e-12 24 Neighborhood of HDAC2 www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 1.441e-13 45 2.461e-12 25 Neighborhood of CKS2 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 1.511e-13 30 2.481e-12 26 Neighborhood of SMC2L1 www.broad.mit.e...
Broad MORF_RAN View Gene Set 2.42e-13 242 3.827e-12 27 Neighborhood of RAN www.broad.mit.e...
Broad MORF_DEK View Gene Set 2.69e-13 229 4.102e-12 28 Neighborhood of DEK www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 3.72e-13 276 5.478e-12 29 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 6.701e-13 145 9.538e-12 30 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 9.895e-13 222 1.32e-11 31 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 9.858e-13 162 1.32e-11 31 Neighborhood of PSMC1 www.broad.mit.e...
Broad MORF_ERH View Gene Set 1.275e-12 103 1.65e-11 33 Neighborhood of ERH www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 2.448e-12 178 3.074e-11 34 Neighborhood of ACP1 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 2.667e-12 26 3.253e-11 35 Neighborhood of MKI67 www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 3.485e-12 220 4.134e-11 36 Neighborhood of EIF3S2 www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 4.187e-12 25 4.832e-11 37 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 4.439e-12 137 4.988e-11 38 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_FBL View Gene Set 4.597e-12 121 5.033e-11 39 Neighborhood of FBL www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 6.776e-12 36 7.234e-11 40 Neighborhood of CKS1B www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 7.676e-12 28 7.994e-11 41 Neighborhood of H2AFX www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 9.631e-12 38 9.791e-11 42 Neighborhood of RFC3 www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 1.058e-11 157 1.051e-10 43 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 1.181e-11 58 1.146e-10 44 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 1.721e-11 145 1.633e-10 45 Neighborhood of PPP1CA www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 6.815e-11 175 6.326e-10 46 Neighborhood of SKP1A www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 9.317e-11 150 8.464e-10 47 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 2.514e-10 58 2.237e-09 48 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 3.818e-10 93 3.327e-09 49 Neighborhood of PTPN11 www.broad.mit.e...
Broad MORF_NPM1 View Gene Set 5.434e-10 152 4.641e-09 50 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 6.126e-10 49 5.129e-09 51 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 9.483e-10 197 7.787e-09 52 Neighborhood of AP2M1 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 1.852e-09 210 1.492e-08 53 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 3.648e-09 208 2.885e-08 54 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 6.731e-09 108 5.226e-08 55 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_EI24 View Gene Set 1.636e-08 136 1.247e-07 56 Neighborhood of EI24 www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 1.753e-08 159 1.313e-07 57 Neighborhood of RAD23B www.broad.mit.e...
Broad MORF_UNG View Gene Set 1.854e-08 65 1.365e-07 58 Neighborhood of UNG www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 1.945e-08 73 1.408e-07 59 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 2.195e-08 71 1.562e-07 60 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 2.56e-08 90 1.792e-07 61 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 3.269e-08 51 2.252e-07 62 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 4.176e-08 79 2.831e-07 63 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 5.027e-08 173 3.354e-07 64 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 5.286e-08 105 3.472e-07 65 Neighborhood of DNMT1 www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 6.968e-08 102 4.508e-07 66 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 7.146e-08 175 4.554e-07 67 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 1.159e-07 78 7.276e-07 68 Neighborhood of RAN www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 1.944e-07 29 1.203e-06 69 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_PPP2R4 View Gene Set 2.217e-07 44 1.353e-06 70 Neighborhood of PPP2R4 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 3.478e-07 196 2.091e-06 71 Neighborhood of RAC1 www.broad.mit.e...
Broad MORF_NME2 View Gene Set 3.889e-07 145 2.306e-06 72 Neighborhood of NME2 www.broad.mit.e...
Broad MORF_ACTG1 View Gene Set 4.268e-07 134 2.496e-06 73 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 4.559e-07 88 2.631e-06 74 Neighborhood of PPP6C www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 6.586e-07 72 3.75e-06 75 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 7.778e-07 61 4.37e-06 76 Neighborhood of BUB1B www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 8.593e-07 113 4.765e-06 77 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 1.06e-06 76 5.804e-06 78 Neighborhood of CCNI www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 1.102e-06 149 5.957e-06 79 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_SART1 View Gene Set 1.482e-06 55 7.913e-06 80 Neighborhood of SART1 www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 1.901e-06 179 1.002e-05 81 Neighborhood of RAB1A www.broad.mit.e...
Broad MORF_EIF4A2 View Gene Set 2.666e-06 120 1.388e-05 82 Neighborhood of EIF4A2 www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 2.955e-06 100 1.52e-05 83 Neighborhood of PSMC2 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 3.273e-06 45 1.664e-05 84 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 3.423e-06 123 1.72e-05 85 Neighborhood of MAP2K2 www.broad.mit.e...
Broad GCM_CSNK2B View Gene Set 3.475e-06 88 1.725e-05 86 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_AATF View Gene Set 3.937e-06 179 1.932e-05 87 Neighborhood of AATF www.broad.mit.e...
Broad MORF_ATOX1 View Gene Set 5.156e-06 72 2.502e-05 88 Neighborhood of ATOX1 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 5.608e-06 63 2.691e-05 89 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 8.094e-06 202 3.84e-05 90 Neighborhood of PRKAG1 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 8.638e-06 45 4.009e-05 91 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_FBL View Gene Set 8.556e-06 119 4.009e-05 91 Neighborhood of FBL www.broad.mit.e...
Broad MORF_GMPS View Gene Set 1.78e-05 48 8.172e-05 93 Neighborhood of GMPS www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 1.869e-05 79 8.488e-05 94 Neighborhood of PRDX3 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 1.927e-05 65 8.663e-05 95 Neighborhood of CCNF www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 2.059e-05 76 9.159e-05 96 Neighborhood of MBD4 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 2.663e-05 95 0.0001172 97 Neighborhood of MTA1 www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 2.834e-05 108 0.0001235 98 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 3.041e-05 41 0.0001312 99 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 3.754e-05 119 0.0001603 100 Neighborhood of AP3D1 www.broad.mit.e...
Broad MORF_TPT1 View Gene Set 3.951e-05 100 0.000167 101 Neighborhood of TPT1 www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 7.486e-05 52 0.0003134 102 Neighborhood of DDX5 www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 7.685e-05 52 0.0003186 103 Neighborhood of KPNB1 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 8.725e-05 47 0.0003582 104 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_XPC View Gene Set 9.254e-05 55 0.0003763 105 Neighborhood of XPC www.broad.mit.e...
Broad GNF2_ST13 View Gene Set 9.609e-05 56 0.0003871 106 Neighborhood of ST13 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 0.0001183 170 0.000472 107 Neighborhood of RPA2 www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 0.0001443 143 0.0005705 108 Neighborhood of RAB10 www.broad.mit.e...
Broad GNF2_PTX3 View Gene Set 0.000153 36 0.0005993 109 Neighborhood of PTX3 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 0.0001666 94 0.0006467 110 Neighborhood of RAD54L www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 0.0002099 55 0.0008004 111 Neighborhood of RPA1 www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 0.0002082 98 0.0008004 111 Neighborhood of PAPSS1 www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 0.0003135 68 0.001185 113 Neighborhood of BMPR2 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 0.0003199 67 0.001198 114 Neighborhood of CDC16 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 0.0004357 59 0.001618 115 Neighborhood of CBFB www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 0.0004404 57 0.001621 116 Neighborhood of NPM1 www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 0.000498 29 0.001818 117 Neighborhood of G22P1 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 0.0005079 26 0.001838 118 Neighborhood of MSH2 www.broad.mit.e...
Broad GNF2_EIF3S6 View Gene Set 0.0005323 109 0.00191 119 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 0.0006379 76 0.00227 120 Neighborhood of EIF4E www.broad.mit.e...
Broad MORF_PPP5C View Gene Set 0.0007189 81 0.002537 121 Neighborhood of PPP5C www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 0.0007715 93 0.0027 122 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_PPP2R5E View Gene Set 0.0007892 76 0.002732 123 Neighborhood of PPP2R5E www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 0.0007934 76 0.002732 123 Neighborhood of PSME1 www.broad.mit.e...
Broad GCM_PFN1 View Gene Set 0.0008046 47 0.002748 125 Neighborhood of PFN1 www.broad.mit.e...
Broad MORF_RAB5A View Gene Set 0.0008477 83 0.002873 126 Neighborhood of RAB5A www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 0.0008816 47 0.002941 127 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GCM_TPT1 View Gene Set 0.0008764 69 0.002941 127 Neighborhood of TPT1 www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 0.0009348 52 0.003081 129 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 0.0009381 133 0.003081 129 Neighborhood of PRKAR1A www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 0.0009998 110 0.003259 131 Neighborhood of PPP2CA www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 0.001065 32 0.003445 132 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 0.001097 50 0.003522 133 Neighborhood of SNRP70 www.broad.mit.e...
Broad GCM_DENR View Gene Set 0.001278 40 0.004072 134 Neighborhood of DENR www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.001375 131 0.004349 135 Neighborhood of TPR www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 0.001459 34 0.00458 136 Neighborhood of RAF1 www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.001633 138 0.00509 137 Neighborhood of MYST2 www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 0.001831 33 0.005665 138 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_DAP View Gene Set 0.001847 72 0.005674 139 Neighborhood of DAP www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 0.002023 94 0.006171 140 Neighborhood of RAF1 www.broad.mit.e...
Broad GCM_MAP1B View Gene Set 0.002226 55 0.00674 141 Neighborhood of MAP1B www.broad.mit.e...
Broad GNF2_CDH11 View Gene Set 0.002626 25 0.007896 142 Neighborhood of CDH11 www.broad.mit.e...
Broad GCM_NCAM1 View Gene Set 0.002847 111 0.008501 143 Neighborhood of NCAM1 www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.002964 44 0.008789 144 Neighborhood of UBE2A www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 0.003053 54 0.008992 145 Neighborhood of RBBP6 www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 0.003251 61 0.009509 146 Neighborhood of XRCC5 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.003441 30 0.009876 147 Neighborhood of RAD21 www.broad.mit.e...
Broad GCM_MAX View Gene Set 0.003466 28 0.009876 147 Neighborhood of MAX www.broad.mit.e...
Broad GCM_TPR View Gene Set 0.003469 29 0.009876 147 Neighborhood of TPR www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 0.003458 22 0.009876 147 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_PHB View Gene Set 0.003942 112 0.01115 151 Neighborhood of PHB www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 0.003973 48 0.01116 152 Neighborhood of BAG5 www.broad.mit.e...
Broad GCM_VAV1 View Gene Set 0.004076 46 0.01138 153 Neighborhood of VAV1 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 0.004231 69 0.01173 154 Neighborhood of SP3 www.broad.mit.e...
Broad GCM_RBM8A View Gene Set 0.004384 64 0.01208 155 Neighborhood of RBM8A www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.00477 99 0.013 156 Neighborhood of TERF2IP www.broad.mit.e...
Broad GCM_AIP View Gene Set 0.004782 36 0.013 156 Neighborhood of AIP www.broad.mit.e...
Broad GCM_UBE2N View Gene Set 0.005157 125 0.01394 158 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_REV3L View Gene Set 0.00534 52 0.01434 159 Neighborhood of REV3L www.broad.mit.e...
Broad MORF_RAB11A View Gene Set 0.005579 53 0.01489 160 Neighborhood of RAB11A www.broad.mit.e...
Broad MORF_SS18 View Gene Set 0.005955 55 0.01579 161 Neighborhood of SS18 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 0.006064 33 0.01598 162 Neighborhood of PPP6C www.broad.mit.e...
Broad GNF2_NS View Gene Set 0.006107 35 0.016 163 Neighborhood of NS www.broad.mit.e...
Broad GNF2_GLTSCR2 View Gene Set 0.006952 31 0.0181 164 Neighborhood of GLTSCR2 www.broad.mit.e...
Broad MORF_ERCC2 View Gene Set 0.007246 91 0.01875 165 Neighborhood of ERCC2 www.broad.mit.e...
Broad GCM_MSN View Gene Set 0.007768 24 0.01986 166 Neighborhood of MSN www.broad.mit.e...
Broad GCM_ZNF198 View Gene Set 0.007761 98 0.01986 166 Neighborhood of ZNF198 www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 0.007971 57 0.02026 168 Neighborhood of TERF1 www.broad.mit.e...
Broad GCM_HDAC1 View Gene Set 0.008103 30 0.02046 169 Neighborhood of HDAC1 www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.008145 33 0.02046 169 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GCM_CRKL View Gene Set 0.008696 50 0.02168 171 Neighborhood of CRKL www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 0.008742 28 0.02168 171 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 0.008783 144 0.02168 171 Neighborhood of MAP4K4 www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 0.009214 26 0.02261 174 Neighborhood of CBFB www.broad.mit.e...
Broad GNF2_HLA-C View Gene Set 0.009671 44 0.0236 175 Neighborhood of HLA-C www.broad.mit.e...
Broad GNF2_DENR View Gene Set 0.01057 39 0.02565 176 Neighborhood of DENR www.broad.mit.e...
Broad GCM_IL6ST View Gene Set 0.01094 48 0.0264 177 Neighborhood of IL6ST www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 0.0111 30 0.02664 178 Neighborhood of MSH6 www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 0.0113 98 0.02695 179 Neighborhood of RFC1 www.broad.mit.e...
Broad GNF2_STAT6 View Gene Set 0.0114 75 0.02705 180 Neighborhood of STAT6 www.broad.mit.e...
Broad MORF_ATRX View Gene Set 0.01157 185 0.0273 181 Neighborhood of ATRX www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 0.01177 54 0.02761 182 Neighborhood of DEAF1 www.broad.mit.e...
Broad GNF2_PTPN6 View Gene Set 0.01234 44 0.02878 183 Neighborhood of PTPN6 www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 0.01271 98 0.0295 184 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_SERPINB5 View Gene Set 0.0131 25 0.03024 185 Neighborhood of SERPINB5 www.broad.mit.e...
Broad GCM_HBP1 View Gene Set 0.01407 54 0.0323 186 Neighborhood of HBP1 www.broad.mit.e...
Broad MORF_RFC5 View Gene Set 0.01431 69 0.03267 187 Neighborhood of RFC5 www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 0.01497 85 0.03381 188 Neighborhood of HDAC1 www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.01496 24 0.03381 188 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_JUND View Gene Set 0.01547 63 0.03476 190 Neighborhood of JUND www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 0.01672 36 0.03739 191 Neighborhood of MLH1 www.broad.mit.e...
Broad GNF2_CD53 View Gene Set 0.01709 54 0.03801 192 Neighborhood of CD53 www.broad.mit.e...
Broad GCM_GSTA4 View Gene Set 0.01761 57 0.03895 193 Neighborhood of GSTA4 www.broad.mit.e...
Broad GNF2_RAP1B View Gene Set 0.0184 33 0.0405 194 Neighborhood of RAP1B www.broad.mit.e...
Broad GNF2_CDH3 View Gene Set 0.01887 24 0.04131 195 Neighborhood of CDH3 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 0.02189 120 0.04769 196 Neighborhood of CDC10 www.broad.mit.e...
Broad GNF2_TPT1 View Gene Set 0.02245 38 0.04866 197 Neighborhood of TPT1 www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.02264 100 0.04882 198 Neighborhood of DFFA www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 0.02312 220 0.04961 199 Neighborhood of DDB1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_54 View Gene Set 9.793e-36 242 4.446e-33 1 Genes in module_54 www.broad.mit.e...
Broad module_3 View Gene Set 2.688e-24 374 6.101e-22 2 Genes in module_3 www.broad.mit.e...
Broad module_52 View Gene Set 1.811e-22 415 2.74e-20 3 Genes in module_52 www.broad.mit.e...
Broad module_17 View Gene Set 5.776e-21 351 6.555e-19 4 Genes in module_17 www.broad.mit.e...
Broad module_198 View Gene Set 4.036e-20 288 3.664e-18 5 Genes in module_198 www.broad.mit.e...
Broad module_252 View Gene Set 4.861e-20 224 3.678e-18 6 Genes in module_252 www.broad.mit.e...
Broad module_98 View Gene Set 6.977e-19 375 4.525e-17 7 Genes in module_98 www.broad.mit.e...
Broad module_8 View Gene Set 2.941e-18 403 1.669e-16 8 Genes in module_8 www.broad.mit.e...
Broad module_18 View Gene Set 1.69e-16 434 8.523e-15 9 Genes in module_18 www.broad.mit.e...
Broad module_126 View Gene Set 4.841e-15 173 2.198e-13 10 Genes in module_126 www.broad.mit.e...
Broad module_124 View Gene Set 5.776e-14 92 2.384e-12 11 Genes in module_124 www.broad.mit.e...
Broad module_83 View Gene Set 6.814e-12 296 2.465e-10 12 Genes in module_83 www.broad.mit.e...
Broad module_105 View Gene Set 7.058e-12 192 2.465e-10 12 Genes in module_105 www.broad.mit.e...
Broad module_118 View Gene Set 8.501e-12 393 2.683e-10 14 Genes in module_118 www.broad.mit.e...
Broad module_151 View Gene Set 8.864e-12 297 2.683e-10 14 Genes in module_151 www.broad.mit.e...
Broad module_114 View Gene Set 2.579e-11 314 7.318e-10 16 Genes in module_114 www.broad.mit.e...
Broad module_1 View Gene Set 9.478e-11 355 2.531e-09 17 Genes in module_1 www.broad.mit.e...
Broad module_32 View Gene Set 1.144e-10 227 2.886e-09 18 Genes in module_32 www.broad.mit.e...
Broad module_321 View Gene Set 1.482e-10 107 3.541e-09 19 Genes in module_321 www.broad.mit.e...
Broad module_57 View Gene Set 4.204e-10 54 9.544e-09 20 Genes in module_57 www.broad.mit.e...
Broad module_72 View Gene Set 1.466e-09 293 3.17e-08 21 Genes in module_72 www.broad.mit.e...
Broad module_158 View Gene Set 3.564e-09 41 7.355e-08 22 Genes in module_158 www.broad.mit.e...
Broad module_244 View Gene Set 8.36e-09 182 1.65e-07 23 Genes in module_244 www.broad.mit.e...
Broad module_125 View Gene Set 1.069e-08 42 2.022e-07 24 Genes in module_125 www.broad.mit.e...
Broad module_320 View Gene Set 1.754e-08 19 3.185e-07 25 Genes in module_320 www.broad.mit.e...
Broad module_53 View Gene Set 2.557e-08 389 4.465e-07 26 Genes in module_53 www.broad.mit.e...
Broad module_197 View Gene Set 3.461e-08 170 5.612e-07 27 Genes in module_197 www.broad.mit.e...
Broad module_403 View Gene Set 3.342e-08 44 5.612e-07 27 Genes in module_403 www.broad.mit.e...
Broad module_315 View Gene Set 5.587e-08 15 8.747e-07 29 Genes in module_315 www.broad.mit.e...
Broad module_212 View Gene Set 1.563e-07 316 2.365e-06 30 Genes in module_212 www.broad.mit.e...
Broad module_15 View Gene Set 2.748e-07 347 4.024e-06 31 Genes in module_15 www.broad.mit.e...
Broad module_19 View Gene Set 5.589e-07 306 7.929e-06 32 Genes in module_19 www.broad.mit.e...
Broad module_397 View Gene Set 6.885e-07 114 9.473e-06 33 Genes in module_397 www.broad.mit.e...
Broad module_16 View Gene Set 2.129e-06 495 2.843e-05 34 Genes in module_16 www.broad.mit.e...
Broad module_159 View Gene Set 5.731e-06 81 7.435e-05 35 Genes in module_159 www.broad.mit.e...
Broad module_293 View Gene Set 6.25e-06 12 7.882e-05 36 Genes in module_293 www.broad.mit.e...
Broad module_61 View Gene Set 6.771e-06 50 8.308e-05 37 Genes in module_61 www.broad.mit.e...
Broad module_143 View Gene Set 1.337e-05 14 0.0001598 38 Genes in module_143 www.broad.mit.e...
Broad module_451 View Gene Set 2.724e-05 29 0.000317 39 Genes in module_451 www.broad.mit.e...
Broad module_144 View Gene Set 4.282e-05 8 0.0004742 40 Genes in module_144 www.broad.mit.e...
Broad module_183 View Gene Set 4.19e-05 52 0.0004742 40 Genes in module_183 www.broad.mit.e...
Broad module_312 View Gene Set 4.518e-05 45 0.0004884 42 Genes in module_312 www.broad.mit.e...
Broad module_91 View Gene Set 7.176e-05 37 0.0007577 43 Genes in module_91 www.broad.mit.e...
Broad module_392 View Gene Set 8.214e-05 18 0.0008475 44 Genes in module_392 www.broad.mit.e...
Broad module_337 View Gene Set 8.439e-05 59 0.0008514 45 Genes in module_337 www.broad.mit.e...
Broad module_28 View Gene Set 0.0001129 32 0.001114 46 Genes in module_28 www.broad.mit.e...
Broad module_219 View Gene Set 0.0001554 26 0.001501 47 Genes in module_219 www.broad.mit.e...
Broad module_87 View Gene Set 0.0001925 44 0.001821 48 Genes in module_87 www.broad.mit.e...
Broad module_6 View Gene Set 0.0002506 403 0.002322 49 Genes in module_6 www.broad.mit.e...
Broad module_261 View Gene Set 0.0004863 91 0.004416 50 Genes in module_261 www.broad.mit.e...
Broad module_273 View Gene Set 0.000497 50 0.004424 51 Genes in module_273 www.broad.mit.e...
Broad module_447 View Gene Set 0.0005469 35 0.004775 52 Genes in module_447 www.broad.mit.e...
Broad module_168 View Gene Set 0.0006148 22 0.005267 53 Genes in module_168 www.broad.mit.e...
Broad module_543 View Gene Set 0.000629 17 0.005288 54 Genes in module_543 www.broad.mit.e...
Broad module_2 View Gene Set 0.0006786 373 0.005602 55 Genes in module_2 www.broad.mit.e...
Broad module_5 View Gene Set 0.0007022 420 0.005693 56 Genes in module_5 www.broad.mit.e...
Broad module_152 View Gene Set 0.0008058 121 0.006418 57 Genes in module_152 www.broad.mit.e...
Broad module_254 View Gene Set 0.0008305 58 0.006501 58 Genes in module_254 www.broad.mit.e...
Broad module_308 View Gene Set 0.0009142 66 0.006925 59 Genes in module_308 www.broad.mit.e...
Broad module_438 View Gene Set 0.0009244 66 0.006925 59 Genes in module_438 www.broad.mit.e...
Broad module_439 View Gene Set 0.0009304 20 0.006925 59 Genes in module_439 www.broad.mit.e...
Broad module_390 View Gene Set 0.001029 8 0.007531 62 Genes in module_390 www.broad.mit.e...
Broad module_525 View Gene Set 0.001075 61 0.007745 63 Genes in module_525 www.broad.mit.e...
Broad module_323 View Gene Set 0.001134 54 0.007919 64 Genes in module_323 www.broad.mit.e...
Broad module_567 View Gene Set 0.00112 90 0.007919 64 Genes in module_567 www.broad.mit.e...
Broad module_457 View Gene Set 0.001249 9 0.008594 66 Genes in module_457 www.broad.mit.e...
Broad module_164 View Gene Set 0.001341 61 0.00909 67 Genes in module_164 www.broad.mit.e...
Broad module_363 View Gene Set 0.001394 48 0.009304 68 Genes in module_363 www.broad.mit.e...
Broad module_253 View Gene Set 0.001476 21 0.009708 69 Genes in module_253 www.broad.mit.e...
Broad module_182 View Gene Set 0.001505 94 0.009758 70 Genes in module_182 www.broad.mit.e...
Broad module_47 View Gene Set 0.001854 216 0.01186 71 Genes in module_47 www.broad.mit.e...
Broad module_97 View Gene Set 0.002157 91 0.0136 72 Genes in module_97 www.broad.mit.e...
Broad module_418 View Gene Set 0.002187 56 0.0136 73 Genes in module_418 www.broad.mit.e...
Broad module_37 View Gene Set 0.002321 412 0.01424 74 Genes in module_37 www.broad.mit.e...
Broad module_222 View Gene Set 0.002902 22 0.01747 75 Genes in module_222 www.broad.mit.e...
Broad module_223 View Gene Set 0.002925 140 0.01747 75 Genes in module_223 www.broad.mit.e...
Broad module_149 View Gene Set 0.003735 36 0.02202 77 Genes in module_149 www.broad.mit.e...
Broad module_412 View Gene Set 0.003833 13 0.02231 78 Genes in module_412 www.broad.mit.e...
Broad module_38 View Gene Set 0.004567 453 0.02624 79 Genes in module_38 www.broad.mit.e...
Broad module_235 View Gene Set 0.004684 81 0.02625 80 Genes in module_235 www.broad.mit.e...
Broad module_350 View Gene Set 0.00467 57 0.02625 80 Genes in module_350 www.broad.mit.e...
Broad module_177 View Gene Set 0.004775 101 0.02644 82 Genes in module_177 www.broad.mit.e...
Broad module_421 View Gene Set 0.005224 23 0.02858 83 Genes in module_421 www.broad.mit.e...
Broad module_281 View Gene Set 0.005618 28 0.03036 84 Genes in module_281 www.broad.mit.e...
Broad module_358 View Gene Set 0.005858 72 0.03129 85 Genes in module_358 www.broad.mit.e...
Broad module_44 View Gene Set 0.006118 319 0.03217 86 Genes in module_44 www.broad.mit.e...
Broad module_155 View Gene Set 0.006164 25 0.03217 86 Genes in module_155 www.broad.mit.e...
Broad module_310 View Gene Set 0.006313 21 0.03257 88 Genes in module_310 www.broad.mit.e...
Broad module_50 View Gene Set 0.007077 13 0.0361 89 Genes in module_50 www.broad.mit.e...
Broad module_318 View Gene Set 0.007188 28 0.03626 90 Genes in module_318 www.broad.mit.e...
Broad module_229 View Gene Set 0.007288 31 0.03636 91 Genes in module_229 www.broad.mit.e...
Broad module_36 View Gene Set 0.007422 146 0.03663 92 Genes in module_36 www.broad.mit.e...
Broad module_395 View Gene Set 0.00758 14 0.037 93 Genes in module_395 www.broad.mit.e...
Broad module_150 View Gene Set 0.008616 15 0.04118 94 Genes in module_150 www.broad.mit.e...
Broad module_371 View Gene Set 0.008527 25 0.04118 94 Genes in module_371 www.broad.mit.e...
Broad module_69 View Gene Set 0.008718 458 0.04123 96 Genes in module_69 www.broad.mit.e...
Broad module_82 View Gene Set 0.009414 24 0.04406 97 Genes in module_82 www.broad.mit.e...
Broad module_245 View Gene Set 0.009524 26 0.04412 98 Genes in module_245 www.broad.mit.e...
Broad module_196 View Gene Set 0.009948 23 0.04562 99 Genes in module_196 www.broad.mit.e...
Broad module_332 View Gene Set 0.01019 35 0.04625 100 Genes in module_332 www.broad.mit.e...
Broad module_352 View Gene Set 0.01057 17 0.04753 101 Genes in module_352 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 4.42e-16 1197 3.646e-13 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 7.893e-14 304 3.256e-11 2 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 2.734e-13 187 7.519e-11 3 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 1.206e-12 1623 2.488e-10 4 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 1.758e-12 253 2.901e-10 5 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 1.029e-11 148 1.414e-09 6 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad M_PHASE View Gene Set 3.975e-11 111 4.685e-09 7 Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 8.371e-11 167 8.632e-09 8 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad MITOSIS View Gene Set 1.242e-09 81 1.089e-07 9 Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother. www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 1.319e-09 83 1.089e-07 9 Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 3.095e-09 801 2.285e-07 11 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 3.323e-09 458 2.285e-07 11 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 1.285e-08 123 8.153e-07 13 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 1.885e-08 159 1.111e-06 14 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 2.135e-08 197 1.174e-06 15 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 5.841e-07 101 3.012e-05 16 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION View Gene Set 3.518e-06 31 0.0001707 17 Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad REGULATION_OF_CELL_CYCLE View Gene Set 3.951e-06 176 0.0001811 18 Genes annotated by the GO term GO:0051726. Any process that modulates the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 4.891e-06 625 0.0002124 19 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 6.201e-06 738 0.0002436 20 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 6.198e-06 449 0.0002436 20 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 7.44e-06 623 0.000279 22 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 8.364e-06 147 0.0003 23 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 1.338e-05 285 0.0004598 24 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS View Gene Set 2.719e-05 53 0.0008971 25 Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 4.143e-05 271 0.001315 26 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION View Gene Set 5.329e-05 55 0.001628 27 Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 7.974e-05 34 0.002226 28 Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 7.79e-05 779 0.002226 28 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 8.095e-05 601 0.002226 28 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad PROTEIN_METABOLIC_PROCESS View Gene Set 8.812e-05 1198 0.002345 31 Genes annotated by the GO term GO:0019538. The chemical reactions and pathways involving a specific protein rather than of proteins in general. Includes protein modification. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_METABOLIC_PROCESS View Gene Set 0.0001081 255 0.002703 32 Genes annotated by the GO term GO:0009892. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001062 117 0.002703 32 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 0.0001126 288 0.002732 34 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0001177 205 0.002775 35 Genes annotated by the GO term GO:0045934. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 0.0001218 767 0.00279 36 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.0001442 629 0.003216 37 Genes annotated by the GO term GO:0048523. Any process that stops prevents or reduces the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 0.0001655 252 0.003593 38 Genes annotated by the GO term GO:0031324. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad REGULATION_OF_MITOSIS View Gene Set 0.0001747 40 0.003602 39 Genes annotated by the GO term GO:0007088. Any process that modulates the frequency rate or extent of mitosis. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.0001745 83 0.003602 39 Genes annotated by the GO term GO:0000122. Any process that stops prevents or reduces the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 0.0002044 73 0.004112 41 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad REGULATION_OF_DNA_REPLICATION View Gene Set 0.0002291 19 0.004499 42 Genes annotated by the GO term GO:0006275. Any process that modulates the frequency rate or extent of DNA replication. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 0.000319 659 0.006121 43 Genes annotated by the GO term GO:0048519. Any process that stops prevents or reduces the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075 View Gene Set 0.0003333 47 0.006127 44 Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.0003351 457 0.006127 44 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 0.0003416 555 0.006127 44 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad RESPONSE_TO_STRESS View Gene Set 0.0003997 495 0.006933 47 Genes annotated by the GO term GO:0006950. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually but not necessarily exogenous (e.g. temperature humidity ionizing radiation). www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.0004034 452 0.006933 47 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad PROTEIN_FOLDING View Gene Set 0.0004947 56 0.008329 49 Genes annotated by the GO term GO:0006457. The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. www.broad.mit.e...
Broad COENZYME_METABOLIC_PROCESS View Gene Set 0.0005607 37 0.008799 50 Genes annotated by the GO term GO:0006732. The chemical reactions and pathways involving coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION View Gene Set 0.0005637 185 0.008799 50 Genes annotated by the GO term GO:0016481. Any process that stops prevents or reduces the frequency rate or extent of transcription. www.broad.mit.e...
Broad GOLGI_VESICLE_TRANSPORT View Gene Set 0.0005653 47 0.008799 50 Genes annotated by the GO term GO:0048193. The directed movement of substances into out of or within the Golgi apparatus mediated by vesicles. www.broad.mit.e...
Broad DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.0005508 22 0.008799 50 Genes annotated by the GO term GO:0006302. The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. www.broad.mit.e...
Broad MICROTUBULE_BASED_PROCESS View Gene Set 0.0006017 80 0.008881 54 Genes annotated by the GO term GO:0007017. Any cellular process that depends upon or alters the microtubule cytoskeleton that part of the cytoskeleton comprising microtubules and their associated proteins. www.broad.mit.e...
Broad POST_GOLGI_VESICLE_MEDIATED_TRANSPORT View Gene Set 0.0005957 14 0.008881 54 Genes annotated by the GO term GO:0006892. The directed movement of substances from the Golgi to other parts of the cell including organelles and the plasma membrane mediated by small transport vesicles. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.0006028 74 0.008881 54 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 0.000806 660 0.01167 57 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0009323 10 0.01326 58 Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS View Gene Set 0.0009809 1085 0.01372 59 Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0009989 27 0.01373 60 Genes annotated by the GO term GO:0051129. Any process that stops prevents or reduces the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. www.broad.mit.e...
Broad MITOTIC_SISTER_CHROMATID_SEGREGATION View Gene Set 0.001021 16 0.01381 61 Genes annotated by the GO term GO:0000070. The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome composed of two sister chromatids aligns at the cell equator paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets. www.broad.mit.e...
Broad REGULATION_OF_KINASE_ACTIVITY View Gene Set 0.001133 152 0.01484 62 Genes annotated by the GO term GO:0043549. Any process that modulates the frequency rate or extent of kinase activity the catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad INTRACELLULAR_TRANSPORT View Gene Set 0.001129 271 0.01484 62 Genes annotated by the GO term GO:0046907. The directed movement of substances within a cell. www.broad.mit.e...
Broad REGULATION_OF_PROTEIN_KINASE_ACTIVITY View Gene Set 0.001202 150 0.01537 64 Genes annotated by the GO term GO:0045859. Any process that modulates the frequency rate or extent of protein kinase activity. www.broad.mit.e...
Broad INTERPHASE View Gene Set 0.001211 68 0.01537 64 Genes annotated by the GO term GO:0051325. Progression through interphase the stage of cell cycle between successive rounds of chromosome segregation. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad REGULATION_OF_TRANSFERASE_ACTIVITY View Gene Set 0.001353 156 0.01666 66 Genes annotated by the GO term GO:0051338. Any process that modulates the frequency rate or extent of transferase activity the catalysis of the transfer of a group e.g. a methyl group glycosyl group acyl group phosphorus-containing or other groups from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.001336 14 0.01666 66 Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis. www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.00141 9 0.01686 68 Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle. www.broad.mit.e...
Broad SISTER_CHROMATID_SEGREGATION View Gene Set 0.0014 17 0.01686 68 Genes annotated by the GO term GO:0000819. The process by which sister chromatids are organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_METABOLIC_PROCESS View Gene Set 0.001765 1099 0.0208 70 Genes annotated by the GO term GO:0044260. The chemical reactions and pathways involving macromolecules large molecules including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad MITOCHONDRION_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.001844 47 0.02143 71 Genes annotated by the GO term GO:0007005. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a mitochondrion; includes mitochondrial morphology and distribution and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. www.broad.mit.e...
Broad INTERPHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 0.001887 62 0.02162 72 Genes annotated by the GO term GO:0051329. Progression through interphase the stage of cell cycle between successive rounds of mitosis. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad REGULATION_OF_DNA_METABOLIC_PROCESS View Gene Set 0.00237 44 0.02678 73 Genes annotated by the GO term GO:0051052. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving DNA. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_PROGRAMMED_CELL_DEATH View Gene Set 0.002421 148 0.02699 74 Genes annotated by the GO term GO:0043069. Any process that stops prevents or reduces the frequency rate or extent of programmed cell death cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad REGULATION_OF_CELL_MIGRATION View Gene Set 0.003229 27 0.03552 75 Genes annotated by the GO term GO:0030334. Any process that modulates the frequency rate or extent of cell migration. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_APOPTOSIS View Gene Set 0.003338 147 0.03623 76 Genes annotated by the GO term GO:0043066. Any process that stops prevents or reduces the frequency rate or extent of cell death by apoptosis. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.00376 115 0.04029 77 Genes annotated by the GO term GO:0045893. Any process that activates or increases the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad PROTEIN_COMPLEX_ASSEMBLY View Gene Set 0.004167 167 0.04407 78 Genes annotated by the GO term GO:0006461. The aggregation arrangement and bonding together of a set of components to form a protein complex. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.004445 117 0.04584 79 Genes annotated by the GO term GO:0051254. Any process that activates or increases the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad CELLULAR_PROTEIN_CATABOLIC_PROCESS View Gene Set 0.004398 58 0.04584 79 Genes annotated by the GO term GO:0044257. The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION_DNA_DEPENDENT View Gene Set 0.004823 127 0.04737 81 Genes annotated by the GO term GO:0045892. Any process that stops prevents or reduces the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.004806 10 0.04737 81 Genes annotated by the GO term GO:0051494. Any process that stops prevents or reduces the frequency rate or extent of the formation arrangement of constituent parts or disassembly of cytoskeletal structures. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.004823 127 0.04737 81 Genes annotated by the GO term GO:0051253. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad CHROMOSOME_CONDENSATION View Gene Set 0.004651 10 0.04737 81 Genes annotated by the GO term GO:0030261. The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division or during apoptosis in eukaryotic cells. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE_CHECKPOINT View Gene Set 0.005138 21 0.04929 85 Genes annotated by the GO term GO:0007093. A signal transduction-based surveillance mechanism that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad ANTI_APOPTOSIS View Gene Set 0.005086 115 0.04929 85 Genes annotated by the GO term GO:0006916. A process which directly inhibits any of the steps required for cell death by apoptosis. www.broad.mit.e...
Broad ACTIVATION_OF_IMMUNE_RESPONSE View Gene Set 0.005254 17 0.04982 87 Genes annotated by the GO term GO:0002253. Any process that initiates an immune response. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad ORGANELLE_PART View Gene Set 1.003e-25 1149 1.47e-23 1 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 1.262e-25 1144 1.47e-23 1 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEUS View Gene Set 4.713e-22 1353 3.66e-20 3 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 2.039e-20 2054 1.188e-18 4 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 1.768e-13 543 8.146e-12 5 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 2.447e-13 613 8.146e-12 5 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 2.447e-13 613 8.146e-12 5 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 9.919e-13 914 2.889e-11 8 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 1.651e-12 1350 4.275e-11 9 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 9.445e-10 122 2.201e-08 10 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 3.112e-09 799 6.591e-08 11 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 3.691e-09 335 7.167e-08 12 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 5.998e-09 95 1.075e-07 13 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad SPINDLE View Gene Set 7.704e-09 37 1.282e-07 14 Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 1.071e-08 434 1.56e-07 15 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 1.071e-08 434 1.56e-07 15 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 2.037e-08 146 2.792e-07 17 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 3.189e-08 365 4.129e-07 18 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION View Gene Set 1.774e-06 31 2.176e-05 19 Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 2.339e-06 129 2.725e-05 20 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 3.397e-06 116 3.769e-05 21 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 3.879e-06 290 4.108e-05 22 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad KINETOCHORE View Gene Set 4.772e-06 25 4.834e-05 23 Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules. www.broad.mit.e...
Broad CYTOSKELETAL_PART View Gene Set 1.196e-05 231 0.0001161 24 Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 1.575e-05 44 0.0001467 25 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 2.68e-05 32 0.0002402 26 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 4.487e-05 266 0.0003872 27 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 0.0001204 140 0.001002 28 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM View Gene Set 0.000203 282 0.001631 29 Genes annotated by the GO term GO:0005783. The irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. The ER takes two forms rough (or granular) with ribosomes adhering to the outer surface and smooth (with no ribosomes attached). www.broad.mit.e...
Broad SPINDLE_MICROTUBULE View Gene Set 0.0002985 15 0.002244 30 Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. www.broad.mit.e...
Broad MICROTUBULE View Gene Set 0.0002952 31 0.002244 30 Genes annotated by the GO term GO:0005874. Any of the long generally straight hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation e.g. in the spindle. www.broad.mit.e...
Broad CYTOSKELETON View Gene Set 0.0003255 359 0.00237 32 Genes annotated by the GO term GO:0005856. Any of the various filamentous elements that form the internal framework of cells and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments microfilaments microtubules the microtrabecular lattice and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions including cellular movement cell division endocytosis and movement of organelles. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 0.0004096 202 0.002892 33 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad LATE_ENDOSOME View Gene Set 0.0006045 12 0.004143 34 Genes annotated by the GO term GO:0005770. A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear being concentrated near the microtubule organizing center. www.broad.mit.e...
Broad ENVELOPE View Gene Set 0.0009012 165 0.005675 35 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 0.0009012 165 0.005675 35 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad CENTROSOME View Gene Set 0.0008758 55 0.005675 35 Genes annotated by the GO term GO:0005813. A structure comprised of a core structure (in most organisms a pair of centrioles) and peripheral material from which a microtubule-based structure such as a spindle apparatus is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells though in animal cells it changes continually during the cell-division cycle. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 0.0009428 213 0.005781 38 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER View Gene Set 0.001022 64 0.006106 39 Genes annotated by the GO term GO:0005815. A region in a eukaryotic cell such as a centrosome or basal body from which microtubules grow. www.broad.mit.e...
Broad NUCLEAR_UBIQUITIN_LIGASE_COMPLEX View Gene Set 0.001674 11 0.00975 40 Genes annotated by the GO term GO:0000152. A ubiquitin ligase complex found in the nucleus. www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 0.001797 95 0.01021 41 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad SPINDLE_POLE View Gene Set 0.002034 17 0.01128 42 Genes annotated by the GO term GO:0000922. Either of the ends of a spindle where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules spindle microtubules and astral microtubules. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 0.002943 53 0.01594 43 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.003359 20 0.01779 44 Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE View Gene Set 0.00394 85 0.0204 45 Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad REPLICATION_FORK View Gene Set 0.004754 18 0.02378 46 Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. www.broad.mit.e...
Broad TRANS_GOLGI_NETWORK_TRANSPORT_VESICLE View Gene Set 0.004797 11 0.02378 46 Genes annotated by the GO term GO:0030140. A vesicle that mediates transport between the trans-Golgi network and other parts of the cell. www.broad.mit.e...
Broad TRANSPORT_VESICLE View Gene Set 0.005115 29 0.02483 48 Genes annotated by the GO term GO:0030133. Any of the vesicles of the constitutive secretory pathway which carry cargo from the endoplasmic reticulum to the Golgi between Golgi cisternae and to destinations within or outside the cell. www.broad.mit.e...
Broad EARLY_ENDOSOME View Gene Set 0.006699 18 0.03185 49 Genes annotated by the GO term GO:0005769. Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered. www.broad.mit.e...
Broad PERINUCLEAR_REGION_OF_CYTOPLASM View Gene Set 0.00735 55 0.03425 50 Genes annotated by the GO term GO:0048471. Cytoplasm situated near or occurring around the nucleus. www.broad.mit.e...
Broad PROTEASOME_COMPLEX View Gene Set 0.007846 23 0.03585 51 Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME View Gene Set 0.008979 22 0.0382 52 Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle. www.broad.mit.e...
Broad KINESIN_COMPLEX View Gene Set 0.009134 14 0.0382 52 Genes annotated by the GO term GO:0005871. Any complex that includes a dimer of molecules from the kinesin superfamily a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity or motor which converts the free energy of the gamma phosphate bond of ATP into mechanical work. www.broad.mit.e...
Broad ENDOSOME View Gene Set 0.009174 64 0.0382 52 Genes annotated by the GO term GO:0005768. A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME View Gene Set 0.008979 22 0.0382 52 Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_COMPLEX View Gene Set 0.009182 84 0.0382 52 Genes annotated by the GO term GO:0005667. Any complex distinct from RNA polymerase including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences and regulating transcription. www.broad.mit.e...
Broad U12_DEPENDENT_SPLICEOSOME View Gene Set 0.009381 7 0.03835 57 Genes annotated by the GO term GO:0005689. The minor (U12-dependent) spliceosome is composed of the snRNPs U11 U12 U4atac U6atac and U5 (which is also a component of the major spliceosome). This minor form of the spliceosome is responsible for the splicing of the majority of introns with atypical AT-AC terminal dinucleotides as well as other non-canonical introns. The entire splice site signal not just the terminal dinucleotides is involved in determining which spliceosome utilizes the site. www.broad.mit.e...
Broad LYSOSOMAL_MEMBRANE View Gene Set 0.01049 10 0.04141 58 Genes annotated by the GO term GO:0005765. The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. www.broad.mit.e...
Broad NUCLEOLAR_PART View Gene Set 0.01032 16 0.04141 58 Genes annotated by the GO term GO:0044452. Any constituent part of a nucleolus a small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE View Gene Set 0.01153 74 0.04479 60 Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_BINDING View Gene Set 1.917e-06 236 0.0007591 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad TUBULIN_BINDING View Gene Set 1.307e-05 46 0.002587 2 Genes annotated by the GO term GO:0015631. Interacting selectively with monomeric or multimeric forms of tubulin including microtubules. www.broad.mit.e...
Broad NUCLEOTIDYLTRANSFERASE_ACTIVITY View Gene Set 2.463e-05 47 0.003252 3 Genes annotated by the GO term GO:0016779. Catalysis of the transfer of a nucleotidyl group to a reactant. www.broad.mit.e...
Broad METHYLTRANSFERASE_ACTIVITY View Gene Set 0.000122 36 0.01208 4 Genes annotated by the GO term GO:0008168. Catalysis of the transfer of a methyl group to an acceptor molecule. www.broad.mit.e...
Broad ENZYME_REGULATOR_ACTIVITY View Gene Set 0.0001623 315 0.01285 5 Genes annotated by the GO term GO:0030234. Modulates the activity of an enzyme. www.broad.mit.e...
Broad UNFOLDED_PROTEIN_BINDING View Gene Set 0.0002018 41 0.01332 6 Genes annotated by the GO term GO:0051082. Interacting selectively with an unfolded protein. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 0.000285 587 0.01612 7 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_ONE_CARBON_GROUPS View Gene Set 0.0003343 37 0.01655 8 Genes annotated by the GO term GO:0016741. Catalysis of the transfer of a one-carbon group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad HYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDES View Gene Set 0.0005238 224 0.01942 9 Genes annotated by the GO term GO:0016817. Catalysis of the hydrolysis of any acid anhydride. www.broad.mit.e...
Broad NUCLEOSIDE_TRIPHOSPHATASE_ACTIVITY View Gene Set 0.0005868 208 0.01942 9 Genes annotated by the GO term GO:0017111. Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_NADH_OR_NADPH View Gene Set 0.0005326 25 0.01942 9 Genes annotated by the GO term GO:0016651. Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...
Broad UBIQUITIN_PROTEIN_LIGASE_ACTIVITY View Gene Set 0.0006029 49 0.01942 9 Genes annotated by the GO term GO:0004842. Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine. www.broad.mit.e...
Broad HORMONE_RECEPTOR_BINDING View Gene Set 0.0006375 29 0.01942 9 Genes annotated by the GO term GO:0051427. Interacting selectively with a receptor for hormones. www.broad.mit.e...
Broad MICROTUBULE_BINDING View Gene Set 0.0009434 32 0.02318 14 Genes annotated by the GO term GO:0008017. Interacting selectively with microtubules filaments composed of tubulin monomers. www.broad.mit.e...
Broad S_ADENOSYLMETHIONINE_DEPENDENT_METHYLTRANSFERASE_ACTIVITY View Gene Set 0.001054 23 0.02318 14 Genes annotated by the GO term GO:0008757. Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING View Gene Set 0.001016 32 0.02318 14 Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA. www.broad.mit.e...
Broad SMALL_PROTEIN_CONJUGATING_ENZYME_ACTIVITY View Gene Set 0.0009802 52 0.02318 14 Genes annotated by the GO term GO:0008639. Catalysis of the covalent attachment of small proteins such as ubiquitin or ubiquitin-like proteins to lysine residues on a target protein. This function may be performed alone or in conjunction with an E3 ubiquitin-like protein ligase. www.broad.mit.e...
Broad PYROPHOSPHATASE_ACTIVITY View Gene Set 0.0008409 222 0.02318 14 Genes annotated by the GO term GO:0016462. Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups leaving one phosphate on each of the two fragments. www.broad.mit.e...
Broad DNA_DEPENDENT_ATPASE_ACTIVITY View Gene Set 0.00115 22 0.02396 19 Genes annotated by the GO term GO:0008094. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of single- or double-stranded DNA; drives another reaction. www.broad.mit.e...
Broad ATPASE_ACTIVITY View Gene Set 0.001222 109 0.0242 20 Genes annotated by the GO term GO:0016887. Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction. www.broad.mit.e...
Broad NUCLEAR_HORMONE_RECEPTOR_BINDING View Gene Set 0.001294 28 0.02441 21 Genes annotated by the GO term GO:0035257. Interacting selectively with a nuclear hormone receptor a ligand-dependent receptor found in the nucleus of the cell. www.broad.mit.e...
Broad N_METHYLTRANSFERASE_ACTIVITY View Gene Set 0.001405 13 0.0253 22 Genes annotated by the GO term GO:0008170. Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule. www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS View Gene Set 0.001542 68 0.02655 23 Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad SMALL_CONJUGATING_PROTEIN_LIGASE_ACTIVITY View Gene Set 0.001627 51 0.02684 24 Genes annotated by the GO term GO:0019787. Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein and a substrate lysine residue. www.broad.mit.e...
Broad PROTEIN_METHYLTRANSFERASE_ACTIVITY View Gene Set 0.001743 14 0.02761 25 Genes annotated by the GO term GO:0008276. Catalysis of the transfer of a methyl group (CH3-) to a protein. www.broad.mit.e...
Broad ACID_AMINO_ACID_LIGASE_ACTIVITY View Gene Set 0.001996 57 0.02823 26 Genes annotated by the GO term GO:0016881. Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad LIGASE_ACTIVITY View Gene Set 0.001971 97 0.02823 26 Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. www.broad.mit.e...
Broad EXONUCLEASE_ACTIVITY View Gene Set 0.001909 18 0.02823 26 Genes annotated by the GO term GO:0004527. Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. www.broad.mit.e...
Broad TRANSITION_METAL_ION_BINDING View Gene Set 0.00213 110 0.02909 29 Genes annotated by the GO term GO:0046914. Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium manganese iron copper cobalt nickel molybdenum and silver. www.broad.mit.e...
Broad COPPER_ION_BINDING View Gene Set 0.002581 15 0.03407 30 Genes annotated by the GO term GO:0005507. Interacting selectively with copper (Cu) ions. www.broad.mit.e...
Broad CARBOXY_LYASE_ACTIVITY View Gene Set 0.002848 14 0.03638 31 Genes annotated by the GO term GO:0016831. Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. www.broad.mit.e...
Broad 3_5_EXONUCLEASE_ACTIVITY View Gene Set 0.003225 12 0.03991 32 Genes annotated by the GO term GO:0008408. Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING View Gene Set 0.003407 55 0.04088 33 Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding. www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING View Gene Set 0.003568 34 0.04155 34 Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA. www.broad.mit.e...
Broad RNA_POLYMERASE_ACTIVITY View Gene Set 0.004063 16 0.04485 35 Genes annotated by the GO term GO:0034062. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template. www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED View Gene Set 0.004077 92 0.04485 35 Genes annotated by the GO term GO:0042623. Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive some other reaction for example ion transport across a membrane. www.broad.mit.e...
Broad STRUCTURAL_CONSTITUENT_OF_RIBOSOME View Gene Set 0.004596 80 0.04919 37 Genes annotated by the GO term GO:0003735. The action of a molecule that contributes to the structural integrity of the ribosome. www.broad.mit.e...
Broad BETA_TUBULIN_BINDING View Gene Set 0.004724 10 0.04923 38 Genes annotated by the GO term GO:0048487. Interacting selectively with the microtubule constituent protein beta-tubulin. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 6.788e-22 421 9.048e-19 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 7.218e-22 210 9.048e-19 1 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 3.079e-20 504 2.573e-17 3 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 4.673e-17 208 2.929e-14 4 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 2.515e-14 391 1.261e-11 5 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 1.056e-11 106 4.414e-09 6 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 2.019e-11 773 7.231e-09 7 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 11042152 View Gene Set 6.781e-11 315 2.125e-08 8 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 1.45e-10 317 4.04e-08 9 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 16130169 View Gene Set 2.174e-09 74 5.451e-07 10 Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. www.ncbi.nlm.ni...
PMID 12221128 View Gene Set 1.214e-08 70 2.766e-06 11 Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex. www.ncbi.nlm.ni...
PMID 16341674 View Gene Set 3.736e-08 392 7.204e-06 12 Transcriptome analysis of human gastric cancer. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 3.664e-08 102 7.204e-06 12 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 4.109e-08 693 7.358e-06 14 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 8.47e-08 22 1.416e-05 15 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 10810093 View Gene Set 1.262e-07 151 1.978e-05 16 Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. www.ncbi.nlm.ni...
PMID 11076968 View Gene Set 1.733e-07 62 2.172e-05 17 The centrosomal protein C-Nap1 is required for cell cycle-regulated centrosome cohesion. www.ncbi.nlm.ni...
PMID 12852856 View Gene Set 1.733e-07 61 2.172e-05 17 Polo-like kinase 1 regulates Nlp a centrosome protein involved in microtubule nucleation. www.ncbi.nlm.ni...
PMID 16462731 View Gene Set 1.733e-07 62 2.172e-05 17 The PITSLRE/CDK11p58 protein kinase promotes centrosome maturation and bipolar spindle formation. www.ncbi.nlm.ni...
PMID 7790358 View Gene Set 1.733e-07 61 2.172e-05 17 Cell cycle regulation of the activity and subcellular localization of Plk1 a human protein kinase implicated in mitotic spindle function. www.ncbi.nlm.ni...
PMID 15504738 View Gene Set 2.004e-07 19 2.392e-05 21 Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling. www.ncbi.nlm.ni...
PMID 19237606 View Gene Set 2.234e-07 84 2.546e-05 22 Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 2.665e-07 748 2.905e-05 23 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 4.765e-07 58 4.978e-05 24 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 9.553e-07 108 9.58e-05 25 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 1.238e-06 522 0.0001193 26 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 8084338 View Gene Set 1.549e-06 21 0.0001438 27 HIV-1 gp41 binding proteins and antibodies to gp41 could inhibit enhancement of human Raji cell MHC class I and II expression by gp41. www.ncbi.nlm.ni...
PMID 15489336 View Gene Set 1.98e-06 722 0.0001712 28 From ORFeome to biology: a functional genomics pipeline. www.ncbi.nlm.ni...
PMID 16381901 View Gene Set 1.948e-06 720 0.0001712 28 The LIFEdb database in 2006. www.ncbi.nlm.ni...
PMID 11285280 View Gene Set 2.327e-06 62 0.0001944 30 Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 2.412e-06 37 0.000195 31 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 14667819 View Gene Set 3.776e-06 112 0.0002958 32 Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. www.ncbi.nlm.ni...
PMID 15232106 View Gene Set 4.283e-06 30 0.0003254 33 Self-assembling protein microarrays. www.ncbi.nlm.ni...
PMID 12427289 View Gene Set 5.331e-06 20 0.0003931 34 HIV-1 gp120 modulates the immunological function and expression of accessory and co-stimulatory molecules of monocyte-derived dendritic cells. www.ncbi.nlm.ni...
PMID 9121429 View Gene Set 8.683e-06 39 0.000622 35 The human immunodeficiency virus transactivator Tat interacts with the RNA polymerase II holoenzyme. www.ncbi.nlm.ni...
PMID 20522537 View Gene Set 1.141e-05 73 0.0007944 36 Variation within DNA repair pathway genes and risk of multiple sclerosis. www.ncbi.nlm.ni...
PMID 15146077 View Gene Set 1.282e-05 32 0.0008689 37 The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 1.385e-05 48 0.0009138 38 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 19468067 View Gene Set 1.956e-05 10 0.001258 39 Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 2.026e-05 182 0.001269 40 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 1286669 View Gene Set 2.164e-05 28 0.001323 41 Human liver protein map: a reference database established by microsequencing and gel comparison. www.ncbi.nlm.ni...
PMID 15691386 View Gene Set 2.379e-05 12 0.001387 42 HIV-1 Tat protein enhances microtubule polymerization. www.ncbi.nlm.ni...
PMID 15698476 View Gene Set 2.379e-05 12 0.001387 42 HIV-1 Tat apoptosis and the mitochondria: a tubulin link? www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 2.624e-05 212 0.001495 44 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 10908577 View Gene Set 2.96e-05 14 0.001519 45 HIV-1 rev depolymerizes microtubules to form stable bilayered rings. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 3.03e-05 31 0.001519 45 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 12956878 View Gene Set 3.012e-05 10 0.001519 45 Roles of HLA-B HLA-C and HLA-DPA1 incompatibilities in the outcome of unrelated stem-cell transplantation. www.ncbi.nlm.ni...
PMID 16712791 View Gene Set 2.984e-05 342 0.001519 45 Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. www.ncbi.nlm.ni...
PMID 17363900 View Gene Set 2.845e-05 14 0.001519 45 The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 2.835e-05 68 0.001519 45 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 12486001 View Gene Set 4.109e-05 15 0.00202 51 HIV-1 Tat targets microtubules to induce apoptosis a process promoted by the pro-apoptotic Bcl-2 relative Bim. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 4.35e-05 23 0.002097 52 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 15331610 View Gene Set 4.773e-05 12 0.002258 53 The glutamine-rich region of the HIV-1 Tat protein is involved in T-cell apoptosis. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 4.938e-05 242 0.002292 54 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 5.792e-05 34 0.002614 55 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 16713569 View Gene Set 5.838e-05 570 0.002614 55 A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. www.ncbi.nlm.ni...
PMID 15029244 View Gene Set 6.807e-05 57 0.002994 57 Mammalian Cdh1/Fzr mediates its own degradation. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 8.509e-05 74 0.003678 58 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 16236267 View Gene Set 9.223e-05 77 0.003919 59 Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress. www.ncbi.nlm.ni...
PMID 12963728 View Gene Set 9.563e-05 21 0.003996 60 Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex. www.ncbi.nlm.ni...
PMID 17388661 View Gene Set 9.792e-05 24 0.004024 61 Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 0.0001029 22 0.00416 62 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 0.0001054 58 0.004193 63 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 19115949 View Gene Set 0.0001105 18 0.00433 64 Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). www.ncbi.nlm.ni...
PMID 11095689 View Gene Set 0.0001226 17 0.004727 65 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. www.ncbi.nlm.ni...
PMID 15226314 View Gene Set 0.0001398 20 0.00531 66 Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. www.ncbi.nlm.ni...
PMID 8662825 View Gene Set 0.0001492 10 0.005475 67 Cyclin-dependent kinases are inactivated by a combination of p21 and Thr-14/Tyr-15 phosphorylation after UV-induced DNA damage. www.ncbi.nlm.ni...
PMID 9512541 View Gene Set 0.0001507 26 0.005475 67 Isolation and characterization of a human cDNA for mRNA 5'-capping enzyme. www.ncbi.nlm.ni...
PMID 9790902 View Gene Set 0.0001507 26 0.005475 67 Cloning and characterization of three human cDNAs encoding mRNA (guanine-7-)-methyltransferase an mRNA cap methylase. www.ncbi.nlm.ni...
PMID 9111189 View Gene Set 0.0001555 16 0.005568 70 Which DNA polymerases are used for DNA-repair in eukaryotes? www.ncbi.nlm.ni...
PMID 12045100 View Gene Set 0.0001688 18 0.005961 71 DNA replication in eukaryotic cells. www.ncbi.nlm.ni...
PMID 18482256 View Gene Set 0.0001717 44 0.00598 72 Protein microarray analysis identifies human cellular prion protein interactors. www.ncbi.nlm.ni...
PMID 11564863 View Gene Set 0.0001876 23 0.006442 73 Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo. www.ncbi.nlm.ni...
PMID 12930902 View Gene Set 0.0002013 11 0.006556 74 The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA. www.ncbi.nlm.ni...
PMID 17041588 View Gene Set 0.0001936 19 0.006556 74 CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation. www.ncbi.nlm.ni...
PMID 9184228 View Gene Set 0.0002012 21 0.006556 74 Purification of a Tat-associated kinase reveals a TFIIH complex that modulates HIV-1 transcription. www.ncbi.nlm.ni...
PMID 9334327 View Gene Set 0.0002012 21 0.006556 74 The HIV transactivator TAT binds to the CDK-activating kinase and activates the phosphorylation of the carboxy-terminal domain of RNA polymerase II. www.ncbi.nlm.ni...
PMID 19738611 View Gene Set 0.0002153 39 0.006899 78 Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis. www.ncbi.nlm.ni...
PMID 9244350 View Gene Set 0.0002174 11 0.006899 78 BRCA1 proteins are transported to the nucleus in the absence of serum and splice variants BRCA1a BRCA1b are tyrosine phosphoproteins that associate with E2F cyclins and cyclin dependent kinases. www.ncbi.nlm.ni...
PMID 18270339 View Gene Set 0.0002345 57 0.007347 80 Comprehensive analysis of DNA repair gene variants and risk of meningioma. www.ncbi.nlm.ni...
PMID 17081065 View Gene Set 0.0002481 80 0.00768 81 Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. www.ncbi.nlm.ni...
PMID 9852112 View Gene Set 0.0002547 20 0.007786 82 Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes. www.ncbi.nlm.ni...
PMID 12228227 View Gene Set 0.0002702 30 0.00816 83 Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1. www.ncbi.nlm.ni...
PMID 9311822 View Gene Set 0.0002734 22 0.00816 83 A human primary T-lymphocyte-derived human immunodeficiency virus type 1 Tat-associated kinase phosphorylates the C-terminal domain of RNA polymerase II and induces CAK activity. www.ncbi.nlm.ni...
PMID 11984006 View Gene Set 0.0002892 27 0.008489 85 The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins. www.ncbi.nlm.ni...
PMID 16622420 View Gene Set 0.000293 14 0.008489 85 The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres. www.ncbi.nlm.ni...
PMID 9409616 View Gene Set 0.0002946 17 0.008489 85 Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. www.ncbi.nlm.ni...
PMID 12614612 View Gene Set 0.0003313 19 0.009324 88 Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. www.ncbi.nlm.ni...
PMID 15009096 View Gene Set 0.000335 39 0.009324 88 Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase. www.ncbi.nlm.ni...
PMID 8934526 View Gene Set 0.0003287 25 0.009324 88 Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 0.0003384 24 0.009324 88 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 14697242 View Gene Set 0.0003495 15 0.009524 92 Chromosome 13q12 encoded Rho GTPase activating protein suppresses growth of breast carcinoma cells and yeast two-hybrid screen shows its interaction with several proteins. www.ncbi.nlm.ni...
PMID 16622419 View Gene Set 0.0003549 16 0.009567 93 The human CENP-A centromeric nucleosome-associated complex. www.ncbi.nlm.ni...
PMID 12791267 View Gene Set 0.0003807 50 0.01015 94 Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase. www.ncbi.nlm.ni...
PMID 9150948 View Gene Set 0.0003866 15 0.0102 95 A two-dimensional gel database of human colon carcinoma proteins. www.ncbi.nlm.ni...
PMID 12379213 View Gene Set 0.0004056 18 0.01059 96 Transcription factor TFIIH components enhance the GR coactivator activity but not the cell cycle-arresting activity of the human immunodeficiency virus type-1 protein Vpr. www.ncbi.nlm.ni...
PMID 15130578 View Gene Set 0.0004215 22 0.01089 97 Why do cells need an assembly machine for RNA-protein complexes? www.ncbi.nlm.ni...
PMID 9765201 View Gene Set 0.0004998 33 0.01279 98 The HIV-1 Tat cellular coactivator Tat-SF1 is a general transcription elongation factor. www.ncbi.nlm.ni...
PMID 11535616 View Gene Set 0.0005784 18 0.01426 99 Checkpoint inhibition of the APC/C in HeLa cells is mediated by a complex of BUBR1 BUB3 CDC20 and MAD2. www.ncbi.nlm.ni...
PMID 12956947 View Gene Set 0.0005853 15 0.01426 99 TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1. www.ncbi.nlm.ni...
PMID 14593737 View Gene Set 0.0005784 18 0.01426 99 The mitotic checkpoint: a signaling pathway that allows a single unattached kinetochore to inhibit mitotic exit. www.ncbi.nlm.ni...
PMID 15502821 View Gene Set 0.0005858 12 0.01426 99 A conserved Mis12 centromere complex is linked to heterochromatic HP1 and outer kinetochore protein Zwint-1. www.ncbi.nlm.ni...
PMID 7821789 View Gene Set 0.0005639 59 0.01426 99 Construction of a human full-length cDNA bank. www.ncbi.nlm.ni...
PMID 20226869 View Gene Set 0.0006265 25 0.0151 104 Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations. www.ncbi.nlm.ni...
PMID 18954305 View Gene Set 0.0006519 13 0.01556 105 Structural basis and specificity of human otubain 1-mediated deubiquitination. www.ncbi.nlm.ni...
PMID 16272310 View Gene Set 0.0006833 10 0.01616 106 Functional analysis of HIV type 1 Nef reveals a role for PAK2 as a regulator of cell phenotype and function in the murine dendritic cell line DC2.4. www.ncbi.nlm.ni...
PMID 10729169 View Gene Set 0.0007333 15 0.01641 107 Efficient incorporation of HLA class II onto human immunodeficiency virus type 1 requires envelope glycoprotein packaging. www.ncbi.nlm.ni...
PMID 12646563 View Gene Set 0.0007183 20 0.01641 107 Rrn3 becomes inactivated in the process of ribosomal DNA transcription. www.ncbi.nlm.ni...
PMID 3489470 View Gene Set 0.0007333 15 0.01641 107 AIDS and related syndromes as a viral-induced autoimmune disease of the immune system: an anti-MHC II disorder. Therapeutic implications. www.ncbi.nlm.ni...
PMID 7602119 View Gene Set 0.0007333 15 0.01641 107 Endocytosis of endogenously synthesized HIV-1 envelope protein. Mechanism and role in processing for association with class II MHC. www.ncbi.nlm.ni...
PMID 8376762 View Gene Set 0.0007333 15 0.01641 107 HIV-1 envelope protein is expressed on the surface of infected cells before its processing and presentation to class II-restricted T lymphocytes. www.ncbi.nlm.ni...
PMID 9079699 View Gene Set 0.0007333 15 0.01641 107 The enhanced immune response to the HIV gp160/LAMP chimeric gene product targeted to the lysosome membrane protein trafficking pathway. www.ncbi.nlm.ni...
PMID 14569024 View Gene Set 0.0007489 24 0.01662 113 The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA. www.ncbi.nlm.ni...
PMID 10066804 View Gene Set 0.0007655 24 0.01683 114 Tat-associated kinase (P-TEFb): a component of transcription preinitiation and elongation complexes. www.ncbi.nlm.ni...
PMID 17203305 View Gene Set 0.0007916 12 0.01726 115 Genetic variation in the base excision repair pathway and bladder cancer risk. www.ncbi.nlm.ni...
PMID 8811196 View Gene Set 0.0008325 37 0.01799 116 Structure and functions of the 20S and 26S proteasomes. www.ncbi.nlm.ni...
PMID 15265780 View Gene Set 0.0008402 14 0.018 117 Human immunodeficiency virus type-1 accessory protein Vpr: a causative agent of the AIDS-related insulin resistance/lipodystrophy syndrome? www.ncbi.nlm.ni...
PMID 10436018 View Gene Set 0.0008675 15 0.01837 118 The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells. www.ncbi.nlm.ni...
PMID 10893419 View Gene Set 0.0009013 41 0.01837 118 Degradation of HIV-1 integrase by the N-end rule pathway. www.ncbi.nlm.ni...
PMID 12419264 View Gene Set 0.0009013 41 0.01837 118 The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing. www.ncbi.nlm.ni...
PMID 14550573 View Gene Set 0.0009013 41 0.01837 118 Human immunodeficiency virus-1 Tat protein interacts with distinct proteasomal alpha and beta subunits. www.ncbi.nlm.ni...
PMID 20056645 View Gene Set 0.0008817 32 0.01837 118 Association of mitotic regulation pathway polymorphisms with pancreatic cancer risk and outcome. www.ncbi.nlm.ni...
PMID 9079628 View Gene Set 0.0009013 41 0.01837 118 HIV-1 tat inhibits the 20 S proteasome and its 11 S regulator-mediated activation. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 0.0009163 51 0.01853 124 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 10438593 View Gene Set 0.0009484 23 0.01858 125 Direct evidence that HIV-1 Tat stimulates RNA polymerase II carboxyl-terminal domain hyperphosphorylation during transcriptional elongation. www.ncbi.nlm.ni...
PMID 10866664 View Gene Set 0.0009484 23 0.01858 125 Tat modifies the activity of CDK9 to phosphorylate serine 5 of the RNA polymerase II carboxyl-terminal domain during human immunodeficiency virus type 1 transcription. www.ncbi.nlm.ni...
PMID 9570510 View Gene Set 0.0009484 23 0.01858 125 Tat Tat-associated kinase and transcription. www.ncbi.nlm.ni...
PMID 9651670 View Gene Set 0.0009484 23 0.01858 125 Transcriptional control: Tat cofactors and transcriptional elongation. www.ncbi.nlm.ni...
PMID 11713266 View Gene Set 0.0009582 12 0.01858 129 The methylosome a 20S complex containing JBP1 and pICln produces dimethylarginine-modified Sm proteins. www.ncbi.nlm.ni...
PMID 9190208 View Gene Set 0.0009634 10 0.01858 129 Cyclin D1/Cdk4 regulates retinoblastoma protein-mediated cell cycle arrest by site-specific phosphorylation. www.ncbi.nlm.ni...
PMID 15196461 View Gene Set 0.001009 11 0.01931 131 The highly conserved and multifunctional NuA4 HAT complex. www.ncbi.nlm.ni...
PMID 11401437 View Gene Set 0.001033 27 0.01962 132 A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. www.ncbi.nlm.ni...
PMID 10793135 View Gene Set 0.001061 18 0.02 133 Mitotic regulation of the APC activator proteins CDC20 and CDH1. www.ncbi.nlm.ni...
PMID 11742988 View Gene Set 0.001087 20 0.02032 134 APC/C-mediated destruction of the centrosomal kinase Nek2A occurs in early mitosis and depends upon a cyclin A-type D-box. www.ncbi.nlm.ni...
PMID 15835887 View Gene Set 0.001094 12 0.02032 134 Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61 TRAP and two potential new subunits. www.ncbi.nlm.ni...
PMID 12620389 View Gene Set 0.00123 23 0.02251 136 Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis. www.ncbi.nlm.ni...
PMID 9582279 View Gene Set 0.001229 23 0.02251 136 Cloning and functional characterization of PTRF a novel protein which induces dissociation of paused ternary transcription complexes. www.ncbi.nlm.ni...
PMID 12639940 View Gene Set 0.001245 18 0.02262 138 Rab8B GTPase and junction dynamics in the testis. www.ncbi.nlm.ni...
PMID 15561718 View Gene Set 0.001295 19 0.02276 139 Systematic identification and analysis of mammalian small ubiquitin-like modifier substrates. www.ncbi.nlm.ni...
PMID 1939271 View Gene Set 0.001298 39 0.02276 139 Abortive initiation is increased only for the weakest members of a set of down mutants of the adenovirus 2 major late promoter. www.ncbi.nlm.ni...
PMID 2449431 View Gene Set 0.001298 39 0.02276 139 ATP activates transcription initiation from promoters by RNA polymerase II in a reversible step prior to RNA synthesis. www.ncbi.nlm.ni...
PMID 8946909 View Gene Set 0.001298 39 0.02276 139 The general transcription factors of RNA polymerase II. www.ncbi.nlm.ni...
PMID 9405375 View Gene Set 0.001298 39 0.02276 139 Three transitions in the RNA polymerase II transcription complex during initiation. www.ncbi.nlm.ni...
PMID 7776974 View Gene Set 0.001362 18 0.02371 144 Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor. www.ncbi.nlm.ni...
PMID 15231748 View Gene Set 0.001407 519 0.02432 145 Functional proteomics mapping of a human signaling pathway. www.ncbi.nlm.ni...
PMID 10725406 View Gene Set 0.001438 13 0.02438 146 BRCA1 interaction with RNA polymerase II reveals a role for hRPB2 and hRPB10alpha in activated transcription. www.ncbi.nlm.ni...
PMID 11799066 View Gene Set 0.001439 21 0.02438 146 Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. www.ncbi.nlm.ni...
PMID 11829477 View Gene Set 0.001433 13 0.02438 146 Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex. www.ncbi.nlm.ni...
PMID 1602151 View Gene Set 0.001515 99 0.02549 149 Treatment of Haemophilus aphrophilus endocarditis with ciprofloxacin. www.ncbi.nlm.ni...
PMID 10508479 View Gene Set 0.001579 63 0.02639 150 Antigens recognized by autologous antibody in patients with renal-cell carcinoma. www.ncbi.nlm.ni...
PMID 17672918 View Gene Set 0.001592 64 0.02644 151 Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. www.ncbi.nlm.ni...
PMID 19936222 View Gene Set 0.00173 16 0.02853 152 Forty-three loci associated with plasma lipoprotein size concentration and cholesterol content in genome-wide analysis. www.ncbi.nlm.ni...
PMID 12167863 View Gene Set 0.002019 43 0.02896 153 Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. www.ncbi.nlm.ni...
PMID 12719574 View Gene Set 0.002033 42 0.02896 153 Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions. www.ncbi.nlm.ni...
PMID 12750511 View Gene Set 0.002033 42 0.02896 153 Hypermutation of HIV-1 DNA in the absence of the Vif protein. www.ncbi.nlm.ni...
PMID 12754519 View Gene Set 0.001875 71 0.02896 153 Identification and quantification of N-linked glycoproteins using hydrazide chemistry stable isotope labeling and mass spectrometry. www.ncbi.nlm.ni...
PMID 12808465 View Gene Set 0.002019 43 0.02896 153 The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. www.ncbi.nlm.ni...
PMID 12808466 View Gene Set 0.002019 43 0.02896 153 Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. www.ncbi.nlm.ni...
PMID 12809610 View Gene Set 0.002019 43 0.02896 153 DNA deamination mediates innate immunity to retroviral infection. www.ncbi.nlm.ni...
PMID 12830140 View Gene Set 0.002033 42 0.02896 153 DNA deamination: not just a trigger for antibody diversification but also a mechanism for defense against retroviruses. www.ncbi.nlm.ni...
PMID 12840737 View Gene Set 0.002033 42 0.02896 153 Good to CU. www.ncbi.nlm.ni...
PMID 12914693 View Gene Set 0.002033 42 0.02896 153 Death by deamination: a novel host restriction system for HIV-1. www.ncbi.nlm.ni...
PMID 12920286 View Gene Set 0.002033 42 0.02896 153 Virology. Weapons of mutational destruction. www.ncbi.nlm.ni...
PMID 12970355 View Gene Set 0.002019 43 0.02896 153 The enzymatic activity of CEM15/Apobec-3G is essential for the regulation of the infectivity of HIV-1 virion but not a sole determinant of its antiviral activity. www.ncbi.nlm.ni...
PMID 14527406 View Gene Set 0.002019 43 0.02896 153 HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. www.ncbi.nlm.ni...
PMID 14528300 View Gene Set 0.002019 43 0.02896 153 The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. www.ncbi.nlm.ni...
PMID 14528301 View Gene Set 0.002019 43 0.02896 153 HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation. www.ncbi.nlm.ni...
PMID 14557625 View Gene Set 0.002019 43 0.02896 153 The human immunodeficiency virus type 1 Vif protein reduces intracellular expression and inhibits packaging of APOBEC3G (CEM15) a cellular inhibitor of virus infectivity. www.ncbi.nlm.ni...
PMID 14614829 View Gene Set 0.002033 42 0.02896 153 The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G. www.ncbi.nlm.ni...
PMID 15189156 View Gene Set 0.001869 88 0.02896 153 The molecular mechanics of eukaryotic translation. www.ncbi.nlm.ni...
PMID 1559613 View Gene Set 0.001967 17 0.02896 153 HIV-1 Tat acts as a processivity factor in vitro in conjunction with cellular elongation factors. www.ncbi.nlm.ni...
PMID 17577209 View Gene Set 0.001973 28 0.02896 153 The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing. www.ncbi.nlm.ni...
PMID 18485873 View Gene Set 0.00188 13 0.02896 153 Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 7638159 View Gene Set 0.001903 13 0.02896 153 Specific binding of RNA polymerase II to the human immunodeficiency virus trans-activating region RNA is regulated by cellular cofactors and Tat. www.ncbi.nlm.ni...
PMID 9811770 View Gene Set 0.002033 42 0.02896 153 An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein. www.ncbi.nlm.ni...
PMID 9846577 View Gene Set 0.002033 42 0.02896 153 Evidence for a newly discovered cellular anti-HIV-1 phenotype. www.ncbi.nlm.ni...
PMID 11076863 View Gene Set 0.002085 794 0.02953 177 DNA cloning using in vitro site-specific recombination. www.ncbi.nlm.ni...
PMID 1978941 View Gene Set 0.002162 16 0.03011 178 Identification and structural analysis of residues in the V1 region of CD4 involved in interaction with human immunodeficiency virus envelope glycoprotein gp120 and class II major histocompatibility complex molecules. www.ncbi.nlm.ni...
PMID 2543930 View Gene Set 0.002162 16 0.03011 178 Identification of human CD4 residues affecting class II MHC versus HIV-1 gp120 binding. www.ncbi.nlm.ni...
PMID 2846691 View Gene Set 0.002162 16 0.03011 178 Inhibition of CD4+ T cell function by the HIV envelope protein gp120. www.ncbi.nlm.ni...
PMID 1869305 View Gene Set 0.002232 14 0.03074 181 Interaction of CD4 with HLA class II antigens and HIV gp120. www.ncbi.nlm.ni...
PMID 7512597 View Gene Set 0.002232 14 0.03074 181 HLA class II antigens and the HIV envelope glycoprotein gp120 bind to the same face of CD4. www.ncbi.nlm.ni...
PMID 11416179 View Gene Set 0.002287 12 0.03122 183 All kinesin superfamily protein KIF genes in mouse and human. www.ncbi.nlm.ni...
PMID 14499622 View Gene Set 0.002314 53 0.03122 183 Yeast two-hybrid screens imply involvement of Fanconi anemia proteins in transcription regulation cell signaling oxidative metabolism and cellular transport. www.ncbi.nlm.ni...
PMID 15647280 View Gene Set 0.002316 17 0.03122 183 The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes. www.ncbi.nlm.ni...
PMID 9653160 View Gene Set 0.002293 36 0.03122 183 Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. www.ncbi.nlm.ni...
PMID 12676794 View Gene Set 0.002357 33 0.03158 187 The RNA polymerase II elongation complex. www.ncbi.nlm.ni...
PMID 14966270 View Gene Set 0.002368 19 0.03158 187 Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans. www.ncbi.nlm.ni...
PMID 10214908 View Gene Set 0.002382 20 0.03159 189 DNA damage recognition during nucleotide excision repair in mammalian cells. www.ncbi.nlm.ni...
PMID 12393749 View Gene Set 0.002403 23 0.03171 190 Multiple interactions between RNA polymerase I TIF-IA and TAF(I) subunits regulate preinitiation complex assembly at the ribosomal gene promoter. www.ncbi.nlm.ni...
PMID 11310559 View Gene Set 0.002451 17 0.03217 191 Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha. www.ncbi.nlm.ni...
PMID 11953448 View Gene Set 0.002568 10 0.03343 192 Interaction between metabotropic glutamate receptor 7 and alpha tubulin. www.ncbi.nlm.ni...
PMID 9874563 View Gene Set 0.002574 16 0.03343 192 The HIV-1 virion-associated protein vpr is a coactivator of the human glucocorticoid receptor. www.ncbi.nlm.ni...
PMID 12859895 View Gene Set 0.00264 47 0.03412 194 Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. www.ncbi.nlm.ni...
PMID 18997788 View Gene Set 0.00274 10 0.03523 195 The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction. www.ncbi.nlm.ni...
PMID 20050020 View Gene Set 0.002797 13 0.03578 196 Hedgehog signaling maintains hair follicle stem cell phenotype in young and aged human skin. www.ncbi.nlm.ni...
PMID 10531003 View Gene Set 0.00287 15 0.03652 197 Newly assembled snRNPs associate with coiled bodies before speckles suggesting a nuclear snRNP maturation pathway. www.ncbi.nlm.ni...
PMID 17148452 View Gene Set 0.002892 87 0.03661 198 Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2. www.ncbi.nlm.ni...
PMID 8619474 View Gene Set 0.00295 534 0.03717 199 A "double adaptor" method for improved shotgun library construction. www.ncbi.nlm.ni...
PMID 12049628 View Gene Set 0.002976 15 0.0373 200 HIV-1 Tat-associated RNA polymerase C-terminal domain kinase CDK2 phosphorylates CDK7 and stimulates Tat-mediated transcription. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr11_10-15Mb View Gene Set 4.071e-05 24 0.02268 1 Genomic tile: chr11 ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr15_60-65Mb View Gene Set 2.297e-05 43 0.02268 1 Genomic tile: chr15 ; 60000001-65000001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50294 View Gene Set 6.945e-07 245 0.0005105 1 WD_REPEATS_REGION expasy.org/pros...
Null PS50082 View Gene Set 2.853e-06 233 0.001049 2 WD_REPEATS_2 expasy.org/pros...
Null PS51194 View Gene Set 5.39e-06 113 0.00132 3 HELICASE_CTER expasy.org/pros...
Null PS00678 View Gene Set 9.271e-06 168 0.001352 4 WD_REPEATS_1 expasy.org/pros...
Null PS50102 View Gene Set 9.933e-06 229 0.001352 4 RRM expasy.org/pros...
Null PS51192 View Gene Set 1.104e-05 112 0.001352 4 HELICASE_ATP_BIND_1 expasy.org/pros...
Null PS50067 View Gene Set 3.474e-05 46 0.003647 7 KINESIN_MOTOR_DOMAIN2 expasy.org/pros...
Null PS00411 View Gene Set 0.0001547 42 0.01421 8 KINESIN_MOTOR_DOMAIN1 expasy.org/pros...
Null PS00227 View Gene Set 0.0002518 26 0.02057 9 TUBULIN expasy.org/pros...
Null PS00292 View Gene Set 0.0004744 10 0.03486 10 CYCLINS expasy.org/pros...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.CDKN1A View Gene Set 7.842e-05 9 0.01028 1 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 0.0001088 44 0.01028 1 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.RAD51 View Gene Set 0.0004498 7 0.0233 3 Protein-protein-interaction for RAD51 www.ncbi.nlm.ni...
Null ppi.RBL2 View Gene Set 0.0004932 14 0.0233 3 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0007876 16 0.02977 5 Protein-protein-interaction for MYC www.ncbi.nlm.ni...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 5.216e-10 236 1.198e-06 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 5.117e-07 147 0.0004587 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 5.991e-07 168 0.0004587 2 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 8.877e-07 101 0.0005098 4 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 1.683e-06 37 0.0007734 5 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 3.971e-06 40 0.00152 6 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.DDA1 View Gene Set 5.726e-06 44 0.001879 7 Protein-protein-interaction for DDA1 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 1.019e-05 42 0.002926 8 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.ZHX1 View Gene Set 1.508e-05 28 0.00356 9 Protein-protein-interaction for ZHX1 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 1.55e-05 95 0.00356 9 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.USP32 View Gene Set 2.03e-05 18 0.004239 11 Protein-protein-interaction for USP32 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 3.872e-05 23 0.007411 12 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 5.383e-05 28 0.009512 13 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 6.194e-05 50 0.01016 14 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.MED26 View Gene Set 6.819e-05 22 0.01044 15 Protein-protein-interaction for MED26 www.ncbi.nlm.ni...
Null ppi.HDAC1 View Gene Set 9.493e-05 67 0.01363 16 Protein-protein-interaction for HDAC1 www.ncbi.nlm.ni...
Null ppi.UNC119 View Gene Set 0.0001193 56 0.01611 17 Protein-protein-interaction for UNC119 www.ncbi.nlm.ni...
Null ppi.C7orf64 View Gene Set 0.0001317 40 0.01681 18 Protein-protein-interaction for C7orf64 www.ncbi.nlm.ni...
Null ppi.CREBBP View Gene Set 0.0001604 22 0.01898 19 Protein-protein-interaction for CREBBP www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.0001653 17 0.01898 19 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.RNU12-2P View Gene Set 0.0002044 18 0.02135 21 Protein-protein-interaction for RNU12-2P www.ncbi.nlm.ni...
Null ppi.RNU11 View Gene Set 0.0002044 18 0.02135 21 Protein-protein-interaction for RNU11 www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 0.0003035 21 0.02681 23 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 0.0002747 33 0.02681 23 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.MIS12 View Gene Set 0.0002805 9 0.02681 23 Protein-protein-interaction for MIS12 www.ncbi.nlm.ni...
Null ppi.PAAF1 View Gene Set 0.0002954 20 0.02681 23 Protein-protein-interaction for PAAF1 www.ncbi.nlm.ni...
Null ppi.GIGYF2 View Gene Set 0.0003483 17 0.02963 27 Protein-protein-interaction for GIGYF2 www.ncbi.nlm.ni...
Null ppi.MRE11A View Gene Set 0.0003702 13 0.03037 28 Protein-protein-interaction for MRE11A www.ncbi.nlm.ni...
Null ppi.HDAC2 View Gene Set 0.0004396 34 0.0327 29 Protein-protein-interaction for HDAC2 www.ncbi.nlm.ni...
Null ppi.MYO7A View Gene Set 0.0004184 7 0.0327 29 Protein-protein-interaction for MYO7A www.ncbi.nlm.ni...
Null ppi.CHTF18 View Gene Set 0.0004413 13 0.0327 29 Protein-protein-interaction for CHTF18 www.ncbi.nlm.ni...
Null ppi.C20orf20 View Gene Set 0.000505 15 0.03625 32 Protein-protein-interaction for C20orf20 www.ncbi.nlm.ni...
Null ppi.CDKN1A View Gene Set 0.0005452 14 0.03795 33 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.RAD18 View Gene Set 0.0006177 14 0.03945 34 Protein-protein-interaction for RAD18 www.ncbi.nlm.ni...
Null ppi.NEK9 View Gene Set 0.0006107 9 0.03945 34 Protein-protein-interaction for NEK9 www.ncbi.nlm.ni...
Null ppi.PSMD6 View Gene Set 0.0006183 21 0.03945 34 Protein-protein-interaction for PSMD6 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 0.0006676 15 0.04145 37 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.DERL1 View Gene Set 0.000688 10 0.04159 38 Protein-protein-interaction for DERL1 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.0007936 7 0.04674 39 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.USP20 View Gene Set 0.0008726 29 0.04889 40 Protein-protein-interaction for USP20 www.ncbi.nlm.ni...
Null ppi.SEH1L View Gene Set 0.0008641 6 0.04889 40 Protein-protein-interaction for SEH1L www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.C1orf103 View Gene Set 5.638e-06 92 0.006692 1 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 3.785e-06 166 0.006692 1 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.PLK1 View Gene Set 1.962e-05 14 0.01552 3 Protein-protein-interaction for PLK1 www.ncbi.nlm.ni...
Null ppi.NDC80 View Gene Set 3.428e-05 10 0.02035 4 Protein-protein-interaction for NDC80 www.ncbi.nlm.ni...
Null ppi.ZHX1 View Gene Set 6.154e-05 30 0.02537 5 Protein-protein-interaction for ZHX1 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 8.725e-05 33 0.02537 5 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 8.54e-05 25 0.02537 5 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.C7orf64 View Gene Set 8.27e-05 44 0.02537 5 Protein-protein-interaction for C7orf64 www.ncbi.nlm.ni...
Null ppi.UNC119 View Gene Set 9.618e-05 57 0.02537 5 Protein-protein-interaction for UNC119 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 0.0001073 76 0.02548 10 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.RACGAP1 View Gene Set 0.0001668 15 0.03599 11 Protein-protein-interaction for RACGAP1 www.ncbi.nlm.ni...
Null ppi.PTTG1 View Gene Set 0.0002171 8 0.04049 12 Protein-protein-interaction for PTTG1 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.0002217 14 0.04049 12 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.EEF1A1 View Gene Set 0.0002583 7 0.04381 14 Protein-protein-interaction for EEF1A1 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 5.213e-11 251 1.874e-07 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 3.178e-07 220 0.0005712 2 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 5.117e-07 147 0.000613 3 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 8.877e-07 101 0.0007976 4 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 2.92e-06 42 0.002099 5 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 4.464e-06 47 0.002674 6 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.DDA1 View Gene Set 5.726e-06 44 0.00294 7 Protein-protein-interaction for DDA1 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 1.019e-05 42 0.004578 8 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 1.865e-05 100 0.007295 9 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.USP32 View Gene Set 2.03e-05 18 0.007295 9 Protein-protein-interaction for USP32 www.ncbi.nlm.ni...
Null ppi.NDC80 View Gene Set 3.428e-05 10 0.008928 11 Protein-protein-interaction for NDC80 www.ncbi.nlm.ni...
Null ppi.ZHX1 View Gene Set 3.281e-05 35 0.008928 11 Protein-protein-interaction for ZHX1 www.ncbi.nlm.ni...
Null ppi.HDAC1 View Gene Set 3.425e-05 73 0.008928 11 Protein-protein-interaction for HDAC1 www.ncbi.nlm.ni...
Null ppi.MED26 View Gene Set 3.478e-05 23 0.008928 11 Protein-protein-interaction for MED26 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 5.383e-05 28 0.01209 15 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 5.068e-05 24 0.01209 15 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 9.052e-05 28 0.01712 17 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.C7orf64 View Gene Set 8.27e-05 44 0.01712 17 Protein-protein-interaction for C7orf64 www.ncbi.nlm.ni...
Null ppi.CDC20 View Gene Set 8.985e-05 5 0.01712 17 Protein-protein-interaction for CDC20 www.ncbi.nlm.ni...
Null ppi.UNC119 View Gene Set 9.618e-05 58 0.01728 20 Protein-protein-interaction for UNC119 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 0.0001073 76 0.01837 21 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 0.0001174 16 0.01918 22 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 0.000159 104 0.02425 23 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.000162 16 0.02425 23 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.0002012 19 0.02721 25 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.RNU12-2P View Gene Set 0.0002044 18 0.02721 25 Protein-protein-interaction for RNU12-2P www.ncbi.nlm.ni...
Null ppi.RNU11 View Gene Set 0.0002044 18 0.02721 25 Protein-protein-interaction for RNU11 www.ncbi.nlm.ni...
Null ppi.HDAC2 View Gene Set 0.0002449 36 0.03035 28 Protein-protein-interaction for HDAC2 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.0002443 55 0.03035 28 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.C20orf20 View Gene Set 0.000264 16 0.03163 30 Protein-protein-interaction for C20orf20 www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 0.0003035 21 0.03171 31 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.MRE11A View Gene Set 0.0003088 16 0.03171 31 Protein-protein-interaction for MRE11A www.ncbi.nlm.ni...
Null ppi.MIS12 View Gene Set 0.0002805 9 0.03171 31 Protein-protein-interaction for MIS12 www.ncbi.nlm.ni...
Null ppi.PAAF1 View Gene Set 0.0002954 20 0.03171 31 Protein-protein-interaction for PAAF1 www.ncbi.nlm.ni...
Null ppi.STARD13 View Gene Set 0.0002941 15 0.03171 31 Protein-protein-interaction for STARD13 www.ncbi.nlm.ni...
Null ppi.PSMD6 View Gene Set 0.0003191 23 0.03185 36 Protein-protein-interaction for PSMD6 www.ncbi.nlm.ni...
Null ppi.GIGYF2 View Gene Set 0.0003761 19 0.03653 37 Protein-protein-interaction for GIGYF2 www.ncbi.nlm.ni...
Null ppi.FZR1 View Gene Set 0.000412 15 0.03897 38 Protein-protein-interaction for FZR1 www.ncbi.nlm.ni...
Null ppi.CHTF18 View Gene Set 0.0004413 13 0.04067 39 Protein-protein-interaction for CHTF18 www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 0.0005104 34 0.04474 40 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.XPO1 View Gene Set 0.0005101 43 0.04474 40 Protein-protein-interaction for XPO1 www.ncbi.nlm.ni...
Null ppi.MNAT1 View Gene Set 0.0005353 10 0.04581 42 Protein-protein-interaction for MNAT1 www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 0.0005488 31 0.04587 43 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.RACGAP1 View Gene Set 0.0005617 17 0.04588 44 Protein-protein-interaction for RACGAP1 www.ncbi.nlm.ni...
Null ppi.STRA13 View Gene Set 0.0005832 9 0.04601 45 Protein-protein-interaction for STRA13 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0005889 56 0.04601 45 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.USP20 View Gene Set 0.0006203 30 0.04644 47 Protein-protein-interaction for USP20 www.ncbi.nlm.ni...
Null ppi.RAD18 View Gene Set 0.0006177 14 0.04644 47 Protein-protein-interaction for RAD18 www.ncbi.nlm.ni...
Null ppi.MYO7A View Gene Set 0.0006671 8 0.04857 49 Protein-protein-interaction for MYO7A www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 0.0006758 21 0.04857 49 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 0.0007322 15 0.04965 51 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.STIP1 View Gene Set 0.0007229 14 0.04965 51 Protein-protein-interaction for STIP1 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 0.0007194 50 0.04965 51 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null AndrogenReceptor View Gene Set 0.000563 78 0.00563 1 CELL_MAP - AndrogenReceptor gene set www.pathwaycomm...
Null TNF alpha/NF-kB View Gene Set 0.00174 170 0.008699 2 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...
Null EGFR1 View Gene Set 0.01332 137 0.04441 3 CELL_MAP - EGFR1 gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null C-MYC pathway View Gene Set 8.547e-10 149 1.59e-07 1 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null Aurora B signaling View Gene Set 1.73e-07 41 6.437e-06 2 NCI_NATURE - Aurora B signaling gene set www.pathwaycomm...
Null Polo-like kinase signaling events in the cell cycle View Gene Set 1.39e-07 109 6.437e-06 2 NCI_NATURE - Polo-like kinase signaling events in the cell cycle gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional activation View Gene Set 1.058e-07 80 6.437e-06 2 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null PLK1 signaling events View Gene Set 1.063e-07 104 6.437e-06 2 NCI_NATURE - PLK1 signaling events gene set www.pathwaycomm...
Null Signaling by Aurora kinases View Gene Set 6.954e-06 98 0.0002156 6 NCI_NATURE - Signaling by Aurora kinases gene set www.pathwaycomm...
Null FOXM1 transcription factor network View Gene Set 0.0001469 42 0.003904 7 NCI_NATURE - FOXM1 transcription factor network gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 0.0003554 937 0.007344 8 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 0.0003189 875 0.007344 8 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.0005216 29 0.009702 10 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...
Null E2F transcription factor network View Gene Set 0.0005746 73 0.009716 11 NCI_NATURE - E2F transcription factor network gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional repression View Gene Set 0.0007595 64 0.01009 12 NCI_NATURE - Validated targets of C-MYC transcriptional repression gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 0.0006652 796 0.01009 12 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null Direct p53 effectors View Gene Set 0.0007276 139 0.01009 12 NCI_NATURE - Direct p53 effectors gene set www.pathwaycomm...
Null p53 pathway View Gene Set 0.001054 190 0.01307 15 NCI_NATURE - p53 pathway gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 0.001366 812 0.01412 16 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 0.001366 812 0.01412 16 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 0.001366 812 0.01412 16 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 0.001623 677 0.01583 19 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 0.001702 688 0.01583 19 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null Signaling events mediated by focal adhesion kinase View Gene Set 0.001858 660 0.01646 21 NCI_NATURE - Signaling events mediated by focal adhesion kinase gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 0.002175 841 0.01839 22 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null Signaling events mediated by PRL View Gene Set 0.002409 23 0.01948 23 NCI_NATURE - Signaling events mediated by PRL gene set www.pathwaycomm...
Null Regulation of Telomerase View Gene Set 0.002838 68 0.02199 24 NCI_NATURE - Regulation of Telomerase gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 0.003551 686 0.02642 25 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt View Gene Set 0.005384 532 0.03852 26 NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set www.pathwaycomm...
Null Signaling mediated by p38-alpha and p38-beta View Gene Set 0.005602 50 0.03859 27 NCI_NATURE - Signaling mediated by p38-alpha and p38-beta gene set www.pathwaycomm...
Null Regulation of retinoblastoma protein View Gene Set 0.006039 66 0.04012 28 NCI_NATURE - Regulation of retinoblastoma protein gene set www.pathwaycomm...
Null Class I PI3K signaling events View Gene Set 0.006416 632 0.04115 29 NCI_NATURE - Class I PI3K signaling events gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Cell Cycle Mitotic View Gene Set 1.754e-34 312 1.96e-31 1 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null DNA Replication View Gene Set 5.172e-23 200 2.889e-20 2 REACTOME - DNA Replication gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 1.245e-19 180 4.634e-17 3 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null M Phase View Gene Set 1.954e-15 90 5.457e-13 4 REACTOME - M Phase gene set www.pathwaycomm...
Null Mitotic Prometaphase View Gene Set 3.691e-14 86 8.246e-12 5 REACTOME - Mitotic Prometaphase gene set www.pathwaycomm...
Null Gene Expression View Gene Set 2.551e-13 381 4.75e-11 6 REACTOME - Gene Expression gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 6.015e-13 98 9.599e-11 7 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 2.221e-12 96 3.102e-10 8 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null Cell Cycle Checkpoints View Gene Set 4.066e-11 124 5.046e-09 9 REACTOME - Cell Cycle Checkpoints gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 7.524e-11 113 8.404e-09 10 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 1.013e-10 104 1.029e-08 11 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null S Phase View Gene Set 1.989e-10 113 1.851e-08 12 REACTOME - S Phase gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 3.957e-10 174 3.4e-08 13 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 1.484e-09 185 1.184e-07 14 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 1.981e-09 73 1.383e-07 15 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 1.981e-09 72 1.383e-07 15 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 4.16e-09 138 2.733e-07 17 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 5.384e-09 102 3.341e-07 18 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 7.928e-09 158 4.661e-07 19 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null HIV Infection View Gene Set 2.373e-08 194 1.325e-06 20 REACTOME - HIV Infection gene set www.pathwaycomm...
Null Regulation of mitotic cell cycle View Gene Set 2.637e-08 95 1.339e-06 21 REACTOME - Regulation of mitotic cell cycle gene set www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins View Gene Set 2.637e-08 95 1.339e-06 21 REACTOME - APC/C-mediated degradation of cell cycle proteins gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 6.365e-08 103 3.091e-06 23 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 1.075e-07 69 5.005e-06 24 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null DNA Repair View Gene Set 1.216e-07 108 5.434e-06 25 REACTOME - DNA Repair gene set www.pathwaycomm...
Null Influenza Infection View Gene Set 1.944e-07 143 8.351e-06 26 REACTOME - Influenza Infection gene set www.pathwaycomm...
Null Regulation of DNA replication View Gene Set 2.927e-07 81 1.211e-05 27 REACTOME - Regulation of DNA replication gene set www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 3.275e-07 86 1.306e-05 28 REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Loss of proteins required for interphase microtubule organization from the centrosome View Gene Set 3.689e-07 62 1.373e-05 29 REACTOME - Loss of proteins required for interphase microtubule organization from the centrosome gene set www.pathwaycomm...
Null Loss of Nlp from mitotic centrosomes View Gene Set 3.689e-07 62 1.373e-05 29 REACTOME - Loss of Nlp from mitotic centrosomes gene set www.pathwaycomm...
Null Late Phase of HIV Life Cycle View Gene Set 5.55e-07 92 1.856e-05 31 REACTOME - Late Phase of HIV Life Cycle gene set www.pathwaycomm...
Null Influenza Life Cycle View Gene Set 5.649e-07 138 1.856e-05 31 REACTOME - Influenza Life Cycle gene set www.pathwaycomm...
Null DNA Replication Pre-Initiation View Gene Set 5.436e-07 90 1.856e-05 31 REACTOME - DNA Replication Pre-Initiation gene set www.pathwaycomm...
Null M/G1 Transition View Gene Set 5.436e-07 90 1.856e-05 31 REACTOME - M/G1 Transition gene set www.pathwaycomm...
Null mRNA Splicing - Major Pathway View Gene Set 6.67e-07 107 2.07e-05 35 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 6.67e-07 107 2.07e-05 35 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 View Gene Set 8.704e-07 77 2.628e-05 37 REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 1.045e-06 77 2.993e-05 38 REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Removal of licensing factors from origins View Gene Set 1.04e-06 78 2.993e-05 38 REACTOME - Removal of licensing factors from origins gene set www.pathwaycomm...
Null Nucleotide Excision Repair View Gene Set 1.39e-06 51 3.883e-05 40 REACTOME - Nucleotide Excision Repair gene set www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase View Gene Set 1.68e-06 88 4.578e-05 41 REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 1.867e-06 43 4.965e-05 42 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null Assembly of the pre-replicative complex View Gene Set 1.934e-06 75 5.024e-05 43 REACTOME - Assembly of the pre-replicative complex gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 2.412e-06 37 6.123e-05 44 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null Switching of origins to a post-replicative state View Gene Set 3.402e-06 76 8.26e-05 45 REACTOME - Switching of origins to a post-replicative state gene set www.pathwaycomm...
Null Orc1 removal from chromatin View Gene Set 3.402e-06 76 8.26e-05 45 REACTOME - Orc1 removal from chromatin gene set www.pathwaycomm...
Null Global Genomic NER (GG-NER) View Gene Set 4.175e-06 35 9.922e-05 47 REACTOME - Global Genomic NER (GG-NER) gene set www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A View Gene Set 4.632e-06 75 0.0001023 48 REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set www.pathwaycomm...
Null Cyclin A/B1 associated events during G2/M transition View Gene Set 4.67e-06 19 0.0001023 48 REACTOME - Cyclin A/B1 associated events during G2/M transition gene set www.pathwaycomm...
Null snRNP Assembly View Gene Set 4.544e-06 50 0.0001023 48 REACTOME - snRNP Assembly gene set www.pathwaycomm...
Null Metabolism of non-coding RNA View Gene Set 4.544e-06 50 0.0001023 48 REACTOME - Metabolism of non-coding RNA gene set www.pathwaycomm...
Null Metabolism of mRNA View Gene Set 5.75e-06 125 0.0001235 52 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Transcription-coupled NER (TC-NER) View Gene Set 8.597e-06 45 0.0001812 53 REACTOME - Transcription-coupled NER (TC-NER) gene set www.pathwaycomm...
Null E2F mediated regulation of DNA replication View Gene Set 8.989e-06 28 0.0001859 54 REACTOME - E2F mediated regulation of DNA replication gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 1.409e-05 31 0.0002861 55 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements View Gene Set 1.754e-05 95 0.0003499 56 REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Securin View Gene Set 1.977e-05 72 0.0003875 57 REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set www.pathwaycomm...
Null Kinesins View Gene Set 2.139e-05 22 0.0004092 58 REACTOME - Kinesins gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 2.161e-05 28 0.0004092 58 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C View Gene Set 2.295e-05 67 0.0004272 60 REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set www.pathwaycomm...
Null Cyclin E associated events during G1/S transition View Gene Set 2.548e-05 64 0.0004666 61 REACTOME - Cyclin E associated events during G1/S transition gene set www.pathwaycomm...
Null mRNA Capping View Gene Set 2.864e-05 29 0.000516 62 REACTOME - mRNA Capping gene set www.pathwaycomm...
Null Formation of the HIV-1 Early Elongation Complex View Gene Set 3.288e-05 32 0.000565 63 REACTOME - Formation of the HIV-1 Early Elongation Complex gene set www.pathwaycomm...
Null Formation of the Early Elongation Complex View Gene Set 3.288e-05 32 0.000565 63 REACTOME - Formation of the Early Elongation Complex gene set www.pathwaycomm...
Null Transcription View Gene Set 3.234e-05 178 0.000565 63 REACTOME - Transcription gene set www.pathwaycomm...
Null mRNA Splicing - Minor Pathway View Gene Set 3.52e-05 42 0.0005957 66 REACTOME - mRNA Splicing - Minor Pathway gene set www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry View Gene Set 3.643e-05 62 0.0005984 67 REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set www.pathwaycomm...
Null G1/S-Specific Transcription View Gene Set 3.63e-05 16 0.0005984 67 REACTOME - G1/S-Specific Transcription gene set www.pathwaycomm...
Null Host Interactions of HIV factors View Gene Set 3.887e-05 132 0.0006293 69 REACTOME - Host Interactions of HIV factors gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 4.108e-05 29 0.0006555 70 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 4.403e-05 55 0.0006926 71 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex View Gene Set 4.501e-05 66 0.0006982 72 REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set www.pathwaycomm...
Null Metabolism of proteins View Gene Set 4.612e-05 263 0.0007057 73 REACTOME - Metabolism of proteins gene set www.pathwaycomm...
Null Interactions of Rev with host cellular proteins View Gene Set 4.939e-05 33 0.0007456 74 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null RNA Polymerase II Transcription View Gene Set 5.555e-05 101 0.0008274 75 REACTOME - RNA Polymerase II Transcription gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 7.124e-05 51 0.001047 76 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 7.894e-05 35 0.001145 77 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts View Gene Set 8.53e-05 36 0.001183 78 REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex containing HIV-1 Tat View Gene Set 8.577e-05 41 0.001183 78 REACTOME - Formation of HIV-1 elongation complex containing HIV-1 Tat gene set www.pathwaycomm...
Null Tat-mediated elongation of the HIV-1 transcript View Gene Set 8.577e-05 41 0.001183 78 REACTOME - Tat-mediated elongation of the HIV-1 transcript gene set www.pathwaycomm...
Null HIV-1 Transcription Elongation View Gene Set 8.577e-05 41 0.001183 78 REACTOME - HIV-1 Transcription Elongation gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 0.0001013 32 0.00138 82 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null Influenza Viral RNA Transcription and Replication View Gene Set 0.0001098 101 0.001478 83 REACTOME - Influenza Viral RNA Transcription and Replication gene set www.pathwaycomm...
Null Mitochondrial tRNA aminoacylation View Gene Set 0.0001179 21 0.001567 84 REACTOME - Mitochondrial tRNA aminoacylation gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 0.0001304 32 0.001714 85 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null Regulation of ornithine decarboxylase (ODC) View Gene Set 0.0001334 62 0.001733 86 REACTOME - Regulation of ornithine decarboxylase (ODC) gene set www.pathwaycomm...
Null Nuclear import of Rev protein View Gene Set 0.0001376 30 0.001767 87 REACTOME - Nuclear import of Rev protein gene set www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA View Gene Set 0.0001415 33 0.001797 88 REACTOME - Transport of the SLBP Dependant Mature mRNA gene set www.pathwaycomm...
Null RNA Pol II CTD phosphorylation and interaction with CE View Gene Set 0.0001507 27 0.00187 89 REACTOME - RNA Pol II CTD phosphorylation and interaction with CE gene set www.pathwaycomm...
Null RNA Pol II CTD phosphorylation and interaction with CE - 11 View Gene Set 0.0001507 27 0.00187 89 REACTOME - RNA Pol II CTD phosphorylation and interaction with CE - 11 gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER View Gene Set 0.0001555 16 0.001888 91 REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER View Gene Set 0.0001555 16 0.001888 91 REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 0.0001579 49 0.001896 93 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null Pyrimidine biosynthesis View Gene Set 0.0001723 6 0.002047 94 REACTOME - Pyrimidine biosynthesis gene set www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere View Gene Set 0.0001866 35 0.002171 95 REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set www.pathwaycomm...
Null Nucleosome assembly View Gene Set 0.0001866 35 0.002171 95 REACTOME - Nucleosome assembly gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex in the absence of HIV-1 Tat View Gene Set 0.0002231 42 0.002517 97 REACTOME - Formation of HIV-1 elongation complex in the absence of HIV-1 Tat gene set www.pathwaycomm...
Null Formation of RNA Pol II elongation complex View Gene Set 0.0002231 42 0.002517 97 REACTOME - Formation of RNA Pol II elongation complex gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Elongation View Gene Set 0.0002231 42 0.002517 97 REACTOME - RNA Polymerase II Transcription Elongation gene set www.pathwaycomm...
Null Interactions of Vpr with host cellular proteins View Gene Set 0.0002468 34 0.002757 100 REACTOME - Interactions of Vpr with host cellular proteins gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1 View Gene Set 0.0002599 59 0.002846 101 REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D View Gene Set 0.0002599 59 0.002846 101 REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus View Gene Set 0.0003034 31 0.00329 103 REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Termination View Gene Set 0.000328 22 0.003489 104 REACTOME - RNA Polymerase I Transcription Termination gene set www.pathwaycomm...
Null Translation View Gene Set 0.0003274 120 0.003489 104 REACTOME - Translation gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 0.0003982 30 0.004197 106 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null SCF(Skp2)-mediated degradation of p27/p21 View Gene Set 0.000417 52 0.004354 107 REACTOME - SCF(Skp2)-mediated degradation of p27/p21 gene set www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs View Gene Set 0.0004262 31 0.004408 108 REACTOME - Vpr-mediated nuclear import of PICs gene set www.pathwaycomm...
Null Phosphorylation of the APC/C View Gene Set 0.0004416 26 0.004525 109 REACTOME - Phosphorylation of the APC/C gene set www.pathwaycomm...
Null NEP/NS2 Interacts with the Cellular Export Machinery View Gene Set 0.000454 29 0.00461 110 REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set www.pathwaycomm...
Null Transcription of the HIV genome View Gene Set 0.000459 60 0.004619 111 REACTOME - Transcription of the HIV genome gene set www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis View Gene Set 0.0004651 22 0.004638 112 REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set www.pathwaycomm...
Null Mitotic Spindle Checkpoint View Gene Set 0.0005066 19 0.005007 113 REACTOME - Mitotic Spindle Checkpoint gene set www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1 View Gene Set 0.0005114 60 0.005011 114 REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER View Gene Set 0.0005324 15 0.00504 115 REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase View Gene Set 0.0005324 15 0.00504 115 REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set www.pathwaycomm...
Null Cyclin D associated events in G1 View Gene Set 0.0005314 19 0.00504 115 REACTOME - Cyclin D associated events in G1 gene set www.pathwaycomm...
Null G1 Phase View Gene Set 0.0005314 19 0.00504 115 REACTOME - G1 Phase gene set www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components View Gene Set 0.0005784 18 0.005384 119 REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex View Gene Set 0.0005784 18 0.005384 119 REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0) View Gene Set 0.0006438 63 0.005943 121 REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set www.pathwaycomm...
Null G1/S DNA Damage Checkpoints View Gene Set 0.0006714 68 0.006147 122 REACTOME - G1/S DNA Damage Checkpoints gene set www.pathwaycomm...
Null RNA Polymerase II Pre-transcription Events View Gene Set 0.0006929 58 0.006292 123 REACTOME - RNA Polymerase II Pre-transcription Events gene set www.pathwaycomm...
Null Abortive elongation of HIV-1 transcript in the absence of Tat View Gene Set 0.0007016 22 0.00632 124 REACTOME - Abortive elongation of HIV-1 transcript in the absence of Tat gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Escape View Gene Set 0.0007183 21 0.006408 125 REACTOME - RNA Polymerase I Promoter Escape gene set www.pathwaycomm...
Null CDK-mediated phosphorylation and removal of Cdc6 View Gene Set 0.0007229 58 0.006408 125 REACTOME - CDK-mediated phosphorylation and removal of Cdc6 gene set www.pathwaycomm...
Null Regulation of activated PAK-2p34 by proteasome mediated degradation View Gene Set 0.0007812 57 0.006871 127 REACTOME - Regulation of activated PAK-2p34 by proteasome mediated degradation gene set www.pathwaycomm...
Null Degradation of beta-catenin by the destruction complex View Gene Set 0.0008716 56 0.007387 128 REACTOME - Degradation of beta-catenin by the destruction complex gene set www.pathwaycomm...
Null Signaling by Wnt View Gene Set 0.0008716 56 0.007387 128 REACTOME - Signaling by Wnt gene set www.pathwaycomm...
Null p53-Dependent G1/S DNA damage checkpoint View Gene Set 0.0008685 64 0.007387 128 REACTOME - p53-Dependent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Dependent G1 DNA Damage Response View Gene Set 0.0008685 64 0.007387 128 REACTOME - p53-Dependent G1 DNA Damage Response gene set www.pathwaycomm...
Null Recruitment of NuMA to mitotic centrosomes View Gene Set 0.0008729 14 0.007387 128 REACTOME - Recruitment of NuMA to mitotic centrosomes gene set www.pathwaycomm...
Null APC-Cdc20 mediated degradation of Nek2A View Gene Set 0.0008864 23 0.007444 133 REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set www.pathwaycomm...
Null Base Excision Repair View Gene Set 0.0009407 19 0.007784 134 REACTOME - Base Excision Repair gene set www.pathwaycomm...
Null Resolution of Abasic Sites (AP sites) View Gene Set 0.0009407 19 0.007784 134 REACTOME - Resolution of Abasic Sites (AP sites) gene set www.pathwaycomm...
Null Apoptosis View Gene Set 0.001 148 0.008215 136 REACTOME - Apoptosis gene set www.pathwaycomm...
Null Lagging Strand Synthesis View Gene Set 0.001014 20 0.008266 137 REACTOME - Lagging Strand Synthesis gene set www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere View Gene Set 0.001192 11 0.009645 138 REACTOME - Processive synthesis on the C-strand of the telomere gene set www.pathwaycomm...
Null HIV-1 Transcription Initiation View Gene Set 0.001298 40 0.009797 139 REACTOME - HIV-1 Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase II HIV-1 Promoter Escape View Gene Set 0.001298 40 0.009797 139 REACTOME - RNA Polymerase II HIV-1 Promoter Escape gene set www.pathwaycomm...
Null Stabilization of p53 View Gene Set 0.001222 61 0.009797 139 REACTOME - Stabilization of p53 gene set www.pathwaycomm...
Null RNA Polymerase II Promoter Escape View Gene Set 0.001298 40 0.009797 139 REACTOME - RNA Polymerase II Promoter Escape gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Initiation And Promoter Clearance View Gene Set 0.001298 40 0.009797 139 REACTOME - RNA Polymerase II Transcription Initiation And Promoter Clearance gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Initiation View Gene Set 0.001298 40 0.009797 139 REACTOME - RNA Polymerase II Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Pre-Initiation And Promoter Opening View Gene Set 0.001298 40 0.009797 139 REACTOME - RNA Polymerase II Transcription Pre-Initiation And Promoter Opening gene set www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus View Gene Set 0.00124 29 0.009797 139 REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set www.pathwaycomm...
Null Cap-dependent Translation Initiation View Gene Set 0.001256 113 0.009797 139 REACTOME - Cap-dependent Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Initiation View Gene Set 0.001256 113 0.009797 139 REACTOME - Eukaryotic Translation Initiation gene set www.pathwaycomm...
Null Vpu mediated degradation of CD4 View Gene Set 0.001434 57 0.01075 149 REACTOME - Vpu mediated degradation of CD4 gene set www.pathwaycomm...
Null Autodegradation of the E3 ubiquitin ligase COP1 View Gene Set 0.001494 60 0.01112 150 REACTOME - Autodegradation of the E3 ubiquitin ligase COP1 gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Cyclin B View Gene Set 0.001809 22 0.01338 151 REACTOME - APC/C:Cdc20 mediated degradation of Cyclin B gene set www.pathwaycomm...
Null Eukaryotic Translation Elongation View Gene Set 0.001869 88 0.01373 152 REACTOME - Eukaryotic Translation Elongation gene set www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint View Gene Set 0.001904 62 0.01379 153 REACTOME - p53-Independent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Independent DNA Damage Response View Gene Set 0.001904 62 0.01379 153 REACTOME - p53-Independent DNA Damage Response gene set www.pathwaycomm...
Null RNA Polymerase I Chain Elongation View Gene Set 0.001913 49 0.01379 153 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null Unwinding of DNA View Gene Set 0.002194 11 0.01571 156 REACTOME - Unwinding of DNA gene set www.pathwaycomm...
Null tRNA Aminoacylation View Gene Set 0.002233 42 0.01589 157 REACTOME - tRNA Aminoacylation gene set www.pathwaycomm...
Null Activation of BH3-only proteins View Gene Set 0.002323 17 0.01628 158 REACTOME - Activation of BH3-only proteins gene set www.pathwaycomm...
Null Resolution of D-loop structures through Holliday junction intermediates View Gene Set 0.002332 6 0.01628 158 REACTOME - Resolution of D-loop structures through Holliday junction intermediates gene set www.pathwaycomm...
Null Resolution of D-loop structures View Gene Set 0.002332 6 0.01628 158 REACTOME - Resolution of D-loop structures gene set www.pathwaycomm...
Null Formation of incision complex in GG-NER View Gene Set 0.002382 22 0.01642 161 REACTOME - Formation of incision complex in GG-NER gene set www.pathwaycomm...
Null Dual incision reaction in GG-NER View Gene Set 0.002382 22 0.01642 161 REACTOME - Dual incision reaction in GG-NER gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Initiation View Gene Set 0.002555 25 0.01751 163 REACTOME - RNA Polymerase I Transcription Initiation gene set www.pathwaycomm...
Null Removal of DNA patch containing abasic residue View Gene Set 0.002589 17 0.01753 164 REACTOME - Removal of DNA patch containing abasic residue gene set www.pathwaycomm...
Null Resolution of AP sites via the multiple-nucleotide patch replacement pathway View Gene Set 0.002589 17 0.01753 164 REACTOME - Resolution of AP sites via the multiple-nucleotide patch replacement pathway gene set www.pathwaycomm...
Null Insulin Synthesis and Processing View Gene Set 0.002626 132 0.01767 166 REACTOME - Insulin Synthesis and Processing gene set www.pathwaycomm...
Null Peptide chain elongation View Gene Set 0.00267 85 0.01786 167 REACTOME - Peptide chain elongation gene set www.pathwaycomm...
Null MicroRNA (miRNA) Biogenesis View Gene Set 0.002931 22 0.01937 168 REACTOME - MicroRNA (miRNA) Biogenesis gene set www.pathwaycomm...
Null Regulatory RNA pathways View Gene Set 0.002931 22 0.01937 168 REACTOME - Regulatory RNA pathways gene set www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit View Gene Set 0.002955 106 0.01941 170 REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set www.pathwaycomm...
Null Vif-mediated degradation of APOBEC3G View Gene Set 0.003 61 0.0196 171 REACTOME - Vif-mediated degradation of APOBEC3G gene set www.pathwaycomm...
Null Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase View Gene Set 0.00306 16 0.01987 172 REACTOME - Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase gene set www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A View Gene Set 0.003328 61 0.02149 173 REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 0.003411 93 0.0219 174 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null Protein folding View Gene Set 0.00356 29 0.02272 175 REACTOME - Protein folding gene set www.pathwaycomm...
Null Formation of transcription-coupled NER (TC-NER) repair complex View Gene Set 0.003793 29 0.02394 176 REACTOME - Formation of transcription-coupled NER (TC-NER) repair complex gene set www.pathwaycomm...
Null Dual incision reaction in TC-NER View Gene Set 0.003793 29 0.02394 176 REACTOME - Dual incision reaction in TC-NER gene set www.pathwaycomm...
Null Viral Messenger RNA Synthesis View Gene Set 0.003891 14 0.02442 178 REACTOME - Viral Messenger RNA Synthesis gene set www.pathwaycomm...
Null Viral mRNA Translation View Gene Set 0.004022 85 0.0251 179 REACTOME - Viral mRNA Translation gene set www.pathwaycomm...
Null CDC6 association with the ORC:origin complex View Gene Set 0.004086 11 0.02535 180 REACTOME - CDC6 association with the ORC:origin complex gene set www.pathwaycomm...
Null Platelet degranulation View Gene Set 0.004303 32 0.02656 181 REACTOME - Platelet degranulation gene set www.pathwaycomm...
Null Homologous Recombination Repair View Gene Set 0.00439 22 0.02679 182 REACTOME - Homologous Recombination Repair gene set www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks View Gene Set 0.00439 22 0.02679 182 REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set www.pathwaycomm...
Null Removal of the Flap Intermediate from the C-strand View Gene Set 0.004474 10 0.02716 184 REACTOME - Removal of the Flap Intermediate from the C-strand gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Clearance View Gene Set 0.004664 55 0.02816 185 REACTOME - RNA Polymerase I Promoter Clearance gene set www.pathwaycomm...
Null Formation of a pool of free 40S subunits View Gene Set 0.004846 95 0.0291 186 REACTOME - Formation of a pool of free 40S subunits gene set www.pathwaycomm...
Null 3' -UTR-mediated translational regulation View Gene Set 0.005092 105 0.0301 187 REACTOME - 3' -UTR-mediated translational regulation gene set www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression View Gene Set 0.005092 105 0.0301 187 REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set www.pathwaycomm...
Null Phosphorylation of Emi1 View Gene Set 0.005093 12 0.0301 187 REACTOME - Phosphorylation of Emi1 gene set www.pathwaycomm...
Null Eukaryotic Translation Termination View Gene Set 0.005331 85 0.03134 190 REACTOME - Eukaryotic Translation Termination gene set www.pathwaycomm...
Null Activation of NOXA and translocation to mitochondria View Gene Set 0.005635 4 0.03257 191 REACTOME - Activation of NOXA and translocation to mitochondria gene set www.pathwaycomm...
Null Pausing and recovery of Tat-mediated HIV-1 elongation View Gene Set 0.005656 29 0.03257 191 REACTOME - Pausing and recovery of Tat-mediated HIV-1 elongation gene set www.pathwaycomm...
Null Tat-mediated HIV-1 elongation arrest and recovery View Gene Set 0.005656 29 0.03257 191 REACTOME - Tat-mediated HIV-1 elongation arrest and recovery gene set www.pathwaycomm...
Null Metabolism of folate and pterines View Gene Set 0.0056 8 0.03257 191 REACTOME - Metabolism of folate and pterines gene set www.pathwaycomm...
Null Regulation of Apoptosis View Gene Set 0.005915 66 0.03354 195 REACTOME - Regulation of Apoptosis gene set www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA View Gene Set 0.005893 34 0.03354 195 REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set www.pathwaycomm...
Null mRNA 3'-end processing View Gene Set 0.005893 34 0.03354 195 REACTOME - mRNA 3'-end processing gene set www.pathwaycomm...
Null Response to elevated platelet cytosolic Ca2+ View Gene Set 0.006278 43 0.03542 198 REACTOME - Response to elevated platelet cytosolic Ca2+ gene set www.pathwaycomm...
Null Fanconi Anemia pathway View Gene Set 0.006442 22 0.03616 199 REACTOME - Fanconi Anemia pathway gene set www.pathwaycomm...
Null Metabolism of porphyrins View Gene Set 0.006767 11 0.03779 200 REACTOME - Metabolism of porphyrins gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548c-3p View Gene Set 2.072e-10 3130 1.403e-07 1 microRNA targets for hsa-miR-548c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 2.211e-09 2210 7.484e-07 2 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 8.354e-09 2925 1.885e-06 3 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 1.81e-08 2420 2.043e-06 4 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548e View Gene Set 1.651e-08 2325 2.043e-06 4 microRNA targets for hsa-miR-548e from miranda.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 1.63e-08 1022 2.043e-06 4 microRNA targets for hsa-miR-891b from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 7.135e-08 2909 6.901e-06 7 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548o View Gene Set 8.37e-08 2216 7.083e-06 8 microRNA targets for hsa-miR-548o from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 1.046e-07 2652 7.868e-06 9 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 1.475e-07 3175 9.987e-06 10 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548f View Gene Set 2.242e-07 2082 1.38e-05 11 microRNA targets for hsa-miR-548f from miranda.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 2.67e-07 3575 1.39e-05 12 microRNA targets for hsa-miR-590-3p from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 2.47e-07 1858 1.39e-05 12 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 5.039e-07 2711 2.437e-05 14 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 1.551e-06 2539 6.998e-05 15 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-548n View Gene Set 1.923e-06 3830 8.137e-05 16 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-1323 View Gene Set 2.109e-06 2071 8.401e-05 17 microRNA targets for hsa-miR-1323 from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 2.683e-06 2189 9.125e-05 18 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 2.621e-06 3270 9.125e-05 18 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 2.831e-06 2900 9.125e-05 18 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 2.778e-06 2745 9.125e-05 18 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 3.091e-06 2017 9.312e-05 22 microRNA targets for hsa-miR-19b from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 3.164e-06 3124 9.312e-05 22 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 3.585e-06 2574 0.0001011 24 microRNA targets for hsa-miR-524-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1278 View Gene Set 4.167e-06 1219 0.0001079 25 microRNA targets for hsa-miR-1278 from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 4.304e-06 1794 0.0001079 25 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-548g View Gene Set 4.297e-06 2114 0.0001079 25 microRNA targets for hsa-miR-548g from miranda.targets www.mirbase.org...
Null hsa-miR-548l View Gene Set 5.823e-06 2599 0.0001408 28 microRNA targets for hsa-miR-548l from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 6.549e-06 2681 0.0001529 29 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 9.833e-06 1789 0.0002219 30 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-1283 View Gene Set 1.219e-05 1960 0.0002661 31 microRNA targets for hsa-miR-1283 from miranda.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 1.313e-05 1206 0.0002778 32 microRNA targets for hsa-miR-590-5p from miranda.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 1.39e-05 1713 0.0002852 33 microRNA targets for hsa-miR-377 from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 1.77e-05 1644 0.0003329 34 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-1284 View Gene Set 1.766e-05 1108 0.0003329 34 microRNA targets for hsa-miR-1284 from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 1.768e-05 1921 0.0003329 34 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 1.873e-05 1239 0.0003427 37 microRNA targets for hsa-miR-183 from miranda.targets www.mirbase.org...
Null hsa-miR-1305 View Gene Set 2.009e-05 1619 0.0003579 38 microRNA targets for hsa-miR-1305 from miranda.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 2.069e-05 1886 0.0003592 39 microRNA targets for hsa-miR-494 from miranda.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 2.809e-05 1644 0.0004754 40 microRNA targets for hsa-miR-300 from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 2.889e-05 1859 0.0004771 41 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 2.998e-05 2860 0.0004833 42 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 3.696e-05 1379 0.0005819 43 microRNA targets for hsa-miR-888 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 3.953e-05 2173 0.0005947 44 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 3.953e-05 2173 0.0005947 44 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 4.865e-05 2438 0.000716 46 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 5.278e-05 2295 0.0007603 47 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 5.73e-05 2983 0.0007917 48 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 5.715e-05 1040 0.0007917 48 microRNA targets for hsa-miR-606 from miranda.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 6.542e-05 1494 0.0008679 50 microRNA targets for hsa-miR-18a from miranda.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 6.722e-05 1605 0.0008679 50 microRNA targets for hsa-miR-518a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-527 View Gene Set 6.722e-05 1605 0.0008679 50 microRNA targets for hsa-miR-527 from miranda.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 6.795e-05 1217 0.0008679 50 microRNA targets for hsa-miR-582-3p from miranda.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 7.328e-05 2140 0.0009187 54 microRNA targets for hsa-miR-520g from miranda.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 7.677e-05 2322 0.000945 55 microRNA targets for hsa-miR-607 from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 7.92e-05 2008 0.0009575 56 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 8.623e-05 1687 0.0009708 57 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 8.246e-05 1844 0.0009708 57 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 8.827e-05 2114 0.0009708 57 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 8.891e-05 1449 0.0009708 57 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 8.834e-05 1044 0.0009708 57 microRNA targets for hsa-miR-496 from miranda.targets www.mirbase.org...
Null hsa-miR-520h View Gene Set 8.533e-05 1820 0.0009708 57 microRNA targets for hsa-miR-520h from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 9.995e-05 1707 0.001054 63 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.0001012 1949 0.001054 63 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 9.935e-05 2384 0.001054 63 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.0001041 2212 0.001067 66 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 0.0001236 1971 0.001249 67 microRNA targets for hsa-miR-582-5p from miranda.targets www.mirbase.org...
Null hsa-miR-365 View Gene Set 0.0001261 788 0.001255 68 microRNA targets for hsa-miR-365 from miranda.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.0001293 2124 0.001269 69 microRNA targets for hsa-miR-330-3p from miranda.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.0001351 1416 0.001306 70 microRNA targets for hsa-miR-216b from miranda.targets www.mirbase.org...
Null hsa-miR-624 View Gene Set 0.0001481 1486 0.001412 71 microRNA targets for hsa-miR-624 from miranda.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.0001517 1053 0.001426 72 microRNA targets for hsa-miR-21 from miranda.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.0001588 1096 0.001466 73 microRNA targets for hsa-miR-212 from miranda.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 0.0001603 1452 0.001466 73 microRNA targets for hsa-miR-633 from miranda.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.0001659 1638 0.001489 75 microRNA targets for hsa-miR-381 from miranda.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 0.0001672 2421 0.001489 75 microRNA targets for hsa-miR-586 from miranda.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 0.0001807 2011 0.001589 77 microRNA targets for hsa-miR-519c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.0002219 1682 0.001926 78 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 0.0002563 1933 0.00218 79 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 0.0002576 1919 0.00218 79 microRNA targets for hsa-miR-452 from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.0002613 1802 0.002184 81 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-605 View Gene Set 0.00027 1295 0.002229 82 microRNA targets for hsa-miR-605 from miranda.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 0.0002785 437 0.002272 83 microRNA targets for hsa-miR-337-5p from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 0.0002961 2312 0.002386 84 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.0003436 2324 0.002674 85 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-216a View Gene Set 0.0003425 1454 0.002674 85 microRNA targets for hsa-miR-216a from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.0003407 2072 0.002674 85 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.0003566 1804 0.002712 88 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 0.0003551 1259 0.002712 88 microRNA targets for hsa-miR-132 from miranda.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.000373 2080 0.002745 90 microRNA targets for hsa-miR-320a from miranda.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.000373 2080 0.002745 90 microRNA targets for hsa-miR-320b from miranda.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.00037 1860 0.002745 90 microRNA targets for hsa-miR-320c from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.0003932 1861 0.002863 93 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 0.0004698 1183 0.003384 94 microRNA targets for hsa-miR-567 from miranda.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.0004817 2122 0.003433 95 microRNA targets for hsa-miR-20b from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 0.0005585 1874 0.003938 96 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-34c-3p View Gene Set 0.000614 762 0.004285 97 microRNA targets for hsa-miR-34c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.0006554 1877 0.004528 98 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 0.0007104 1282 0.004858 99 microRNA targets for hsa-miR-409-3p from miranda.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 0.000738 1386 0.004898 100 microRNA targets for hsa-miR-506 from miranda.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 0.0007315 1786 0.004898 100 microRNA targets for hsa-miR-519b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 0.0007265 1013 0.004898 100 microRNA targets for hsa-miR-569 from miranda.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.000795 2061 0.005225 103 microRNA targets for hsa-miR-520d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 0.0008655 1222 0.005528 104 microRNA targets for hsa-miR-139-5p from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.0008589 1454 0.005528 104 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-654-3p View Gene Set 0.0008532 1154 0.005528 104 microRNA targets for hsa-miR-654-3p from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.0008902 1858 0.005608 107 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.0008946 2065 0.005608 107 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.0009409 1180 0.005844 109 microRNA targets for hsa-miR-34b from miranda.targets www.mirbase.org...
Null hsa-miR-548p View Gene Set 0.001007 2743 0.006201 110 microRNA targets for hsa-miR-548p from miranda.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.001037 1767 0.006316 111 microRNA targets for hsa-miR-144 from miranda.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.001045 338 0.006316 111 microRNA targets for hsa-miR-518b from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.001084 2090 0.006494 113 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.00114 2077 0.006767 114 microRNA targets for hsa-miR-93 from miranda.targets www.mirbase.org...
Null hsa-miR-543 View Gene Set 0.001172 1457 0.006898 115 microRNA targets for hsa-miR-543 from miranda.targets www.mirbase.org...
Null hsa-miR-1179 View Gene Set 0.001227 1381 0.007101 116 microRNA targets for hsa-miR-1179 from miranda.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 0.00122 1629 0.007101 116 microRNA targets for hsa-miR-421 from miranda.targets www.mirbase.org...
Null hsa-miR-628-5p View Gene Set 0.001271 1073 0.007293 118 microRNA targets for hsa-miR-628-5p from miranda.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 0.001308 2207 0.00744 119 microRNA targets for hsa-miR-580 from miranda.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.001327 1719 0.007487 120 microRNA targets for hsa-miR-320d from miranda.targets www.mirbase.org...
Null hsa-miR-1197 View Gene Set 0.00138 1210 0.007688 121 microRNA targets for hsa-miR-1197 from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.001387 1319 0.007688 121 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.001397 2091 0.007688 121 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-297 View Gene Set 0.001418 1497 0.007744 124 microRNA targets for hsa-miR-297 from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.001478 2504 0.007949 125 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-885-5p View Gene Set 0.001479 714 0.007949 125 microRNA targets for hsa-miR-885-5p from miranda.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.001551 1323 0.008266 127 microRNA targets for hsa-miR-146a from miranda.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.001581 2219 0.008364 128 microRNA targets for hsa-miR-195 from miranda.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.001602 1793 0.008405 129 microRNA targets for hsa-miR-495 from miranda.targets www.mirbase.org...
Null hsa-miR-1272 View Gene Set 0.001665 1955 0.008673 130 microRNA targets for hsa-miR-1272 from miranda.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 0.00171 1330 0.008839 131 microRNA targets for hsa-miR-146b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 0.001753 1393 0.008991 132 microRNA targets for hsa-miR-873 from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.001836 1511 0.009344 133 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-1324 View Gene Set 0.001926 2051 0.009732 134 microRNA targets for hsa-miR-1324 from miranda.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.001974 1946 0.009898 135 microRNA targets for hsa-miR-181a from miranda.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 0.002101 1840 0.01046 136 microRNA targets for hsa-miR-579 from miranda.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 0.002173 2056 0.01074 137 microRNA targets for hsa-miR-302d from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.002294 1646 0.01125 138 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 0.002386 865 0.01162 139 microRNA targets for hsa-miR-487a from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.002451 2025 0.01185 140 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-222 View Gene Set 0.002473 868 0.01187 141 microRNA targets for hsa-miR-222 from miranda.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 0.002784 703 0.01327 142 microRNA targets for hsa-miR-518c from miranda.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 0.00289 1232 0.01359 143 microRNA targets for hsa-miR-199a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-199b-3p View Gene Set 0.00289 1232 0.01359 143 microRNA targets for hsa-miR-199b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-28-3p View Gene Set 0.002929 838 0.01367 145 microRNA targets for hsa-miR-28-3p from miranda.targets www.mirbase.org...
Null hsa-miR-513c View Gene Set 0.003054 1451 0.01416 146 microRNA targets for hsa-miR-513c from miranda.targets www.mirbase.org...
Null hsa-miR-548m View Gene Set 0.003373 2295 0.01553 147 microRNA targets for hsa-miR-548m from miranda.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 0.003498 1837 0.016 148 microRNA targets for hsa-miR-519a from miranda.targets www.mirbase.org...
Null hsa-miR-498 View Gene Set 0.003552 1182 0.01614 149 microRNA targets for hsa-miR-498 from miranda.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 0.00375 1631 0.01693 150 microRNA targets for hsa-miR-335 from miranda.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.003856 1176 0.01722 151 microRNA targets for hsa-miR-455-3p from miranda.targets www.mirbase.org...
Null hsa-miR-499-3p View Gene Set 0.003866 1168 0.01722 151 microRNA targets for hsa-miR-499-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.003981 1019 0.01762 153 microRNA targets for hsa-miR-1297 from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.004061 1414 0.01785 154 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 0.004192 1307 0.01804 155 microRNA targets for hsa-miR-224 from miranda.targets www.mirbase.org...
Null hsa-miR-27b View Gene Set 0.004209 1732 0.01804 155 microRNA targets for hsa-miR-27b from miranda.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.00421 1136 0.01804 155 microRNA targets for hsa-miR-491-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548b-3p View Gene Set 0.004143 1349 0.01804 155 microRNA targets for hsa-miR-548b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.004375 1504 0.01863 159 microRNA targets for hsa-miR-148a from miranda.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.004466 1693 0.01878 160 microRNA targets for hsa-miR-149 from miranda.targets www.mirbase.org...
Null hsa-miR-342-3p View Gene Set 0.004448 1057 0.01878 160 microRNA targets for hsa-miR-342-3p from miranda.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.004502 1236 0.01881 162 microRNA targets for hsa-miR-361-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1277 View Gene Set 0.004534 688 0.01883 163 microRNA targets for hsa-miR-1277 from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.004633 1774 0.01913 164 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.004768 1832 0.01956 165 microRNA targets for hsa-miR-372 from miranda.targets www.mirbase.org...
Null hsa-miR-518d-3p View Gene Set 0.004845 393 0.01976 166 microRNA targets for hsa-miR-518d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1257 View Gene Set 0.004897 1202 0.01985 167 microRNA targets for hsa-miR-1257 from miranda.targets www.mirbase.org...
Null hsa-miR-1243 View Gene Set 0.005025 1196 0.02013 168 microRNA targets for hsa-miR-1243 from miranda.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.005005 1131 0.02013 168 microRNA targets for hsa-miR-219-2-3p from miranda.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 0.005551 1136 0.0221 170 microRNA targets for hsa-miR-384 from miranda.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.005761 943 0.02281 171 microRNA targets for hsa-miR-935 from miranda.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.005895 2054 0.0232 172 microRNA targets for hsa-miR-302a from miranda.targets www.mirbase.org...
Null hsa-miR-145 View Gene Set 0.006003 1785 0.02349 173 microRNA targets for hsa-miR-145 from miranda.targets www.mirbase.org...
Null hsa-miR-489 View Gene Set 0.006122 991 0.02382 174 microRNA targets for hsa-miR-489 from miranda.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.006182 1331 0.02391 175 microRNA targets for hsa-miR-155 from miranda.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 0.006484 1272 0.02494 176 microRNA targets for hsa-miR-101 from miranda.targets www.mirbase.org...
Null hsa-miR-188-3p View Gene Set 0.006566 1191 0.02511 177 microRNA targets for hsa-miR-188-3p from miranda.targets www.mirbase.org...
Null hsa-miR-128 View Gene Set 0.006769 1465 0.02571 178 microRNA targets for hsa-miR-128 from miranda.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 0.006797 1229 0.02571 178 microRNA targets for hsa-miR-485-3p from miranda.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.006936 2159 0.02609 180 microRNA targets for hsa-miR-9 from miranda.targets www.mirbase.org...
Null hsa-miR-1205 View Gene Set 0.007345 1762 0.02747 181 microRNA targets for hsa-miR-1205 from miranda.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 0.007688 1821 0.0286 182 microRNA targets for hsa-miR-515-5p from miranda.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 0.00793 1494 0.02934 183 microRNA targets for hsa-miR-18b from miranda.targets www.mirbase.org...
Null hsa-miR-657 View Gene Set 0.007981 1271 0.02936 184 microRNA targets for hsa-miR-657 from miranda.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.008222 2258 0.03009 185 microRNA targets for hsa-miR-16 from miranda.targets www.mirbase.org...
Null hsa-miR-922 View Gene Set 0.008283 2129 0.03015 186 microRNA targets for hsa-miR-922 from miranda.targets www.mirbase.org...
Null hsa-miR-1299 View Gene Set 0.008616 2168 0.03093 187 microRNA targets for hsa-miR-1299 from miranda.targets www.mirbase.org...
Null hsa-miR-151-3p View Gene Set 0.008635 785 0.03093 187 microRNA targets for hsa-miR-151-3p from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.008549 2118 0.03093 187 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 0.008988 1429 0.03203 190 microRNA targets for hsa-miR-376c from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 0.009198 2246 0.0326 191 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-584 View Gene Set 0.009439 1065 0.03328 192 microRNA targets for hsa-miR-584 from miranda.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.009644 1773 0.03383 193 microRNA targets for hsa-miR-141 from miranda.targets www.mirbase.org...
Null hsa-miR-572 View Gene Set 0.00988 282 0.03448 194 microRNA targets for hsa-miR-572 from miranda.targets www.mirbase.org...
Null hsa-miR-208b View Gene Set 0.01003 499 0.03448 195 microRNA targets for hsa-miR-208b from miranda.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 0.01002 1344 0.03448 195 microRNA targets for hsa-miR-223 from miranda.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 0.009936 1723 0.03448 195 microRNA targets for hsa-miR-27a from miranda.targets www.mirbase.org...
Null hsa-miR-1226 View Gene Set 0.01014 1119 0.03464 198 microRNA targets for hsa-miR-1226 from miranda.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.01018 1641 0.03464 198 microRNA targets for hsa-miR-382 from miranda.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 0.01041 1169 0.03511 200 microRNA targets for hsa-miR-142-3p from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-561 View Gene Set 2.457e-09 651 1.747e-06 1 microRNA targets for hsa-miR-561 from mirbase.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 1.469e-08 789 5.224e-06 2 microRNA targets for hsa-miR-19b from mirbase.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 3.782e-08 742 8.963e-06 3 microRNA targets for hsa-miR-590-3p from mirbase.targets www.mirbase.org...
Null hsa-let-7b* View Gene Set 2.561e-07 772 4.551e-05 4 microRNA targets for hsa-let-7b* from mirbase.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 5.649e-07 803 8.033e-05 5 microRNA targets for hsa-miR-19a from mirbase.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 1.212e-06 696 0.0001436 6 microRNA targets for hsa-miR-26b from mirbase.targets www.mirbase.org...
Null hsa-let-7a* View Gene Set 1.96e-06 772 0.0001513 7 microRNA targets for hsa-let-7a* from mirbase.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 1.963e-06 709 0.0001513 7 microRNA targets for hsa-miR-191 from mirbase.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 2.128e-06 793 0.0001513 7 microRNA targets for hsa-miR-429 from mirbase.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 1.665e-06 704 0.0001513 7 microRNA targets for hsa-miR-513-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 3.221e-06 821 0.0002082 11 microRNA targets for hsa-miR-582-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 4.163e-06 837 0.0002466 12 microRNA targets for hsa-miR-590-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7f-1* View Gene Set 6.044e-06 751 0.0002898 13 microRNA targets for hsa-let-7f-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 6.114e-06 793 0.0002898 13 microRNA targets for hsa-miR-124 from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 5.559e-06 863 0.0002898 13 microRNA targets for hsa-miR-548c-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 9.666e-06 643 0.0004295 16 microRNA targets for hsa-miR-381 from mirbase.targets www.mirbase.org...
Null hsa-miR-208b View Gene Set 1.999e-05 678 0.0007105 17 microRNA targets for hsa-miR-208b from mirbase.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 1.97e-05 672 0.0007105 17 microRNA targets for hsa-miR-300 from mirbase.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 1.936e-05 767 0.0007105 17 microRNA targets for hsa-miR-491-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 1.985e-05 699 0.0007105 17 microRNA targets for hsa-miR-888 from mirbase.targets www.mirbase.org...
Null hsa-let-7d* View Gene Set 2.956e-05 781 0.001001 21 microRNA targets for hsa-let-7d* from mirbase.targets www.mirbase.org...
Null hsa-miR-371-5p View Gene Set 3.254e-05 779 0.001051 22 microRNA targets for hsa-miR-371-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7f-2* View Gene Set 3.607e-05 820 0.001115 23 microRNA targets for hsa-let-7f-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 4.205e-05 690 0.001133 24 microRNA targets for hsa-miR-146b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 4.175e-05 854 0.001133 24 microRNA targets for hsa-miR-200b from mirbase.targets www.mirbase.org...
Null hsa-miR-493* View Gene Set 3.984e-05 522 0.001133 24 microRNA targets for hsa-miR-493* from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 4.464e-05 978 0.001133 24 microRNA targets for hsa-miR-548d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 4.423e-05 755 0.001133 24 microRNA targets for hsa-miR-891b from mirbase.targets www.mirbase.org...
Null hsa-miR-562 View Gene Set 4.961e-05 697 0.001216 29 microRNA targets for hsa-miR-562 from mirbase.targets www.mirbase.org...
Null hsa-let-7e* View Gene Set 7.512e-05 790 0.00178 30 microRNA targets for hsa-let-7e* from mirbase.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 8.683e-05 832 0.001929 31 microRNA targets for hsa-miR-520d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 8.616e-05 705 0.001929 31 microRNA targets for hsa-miR-628-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 9.782e-05 581 0.002108 33 microRNA targets for hsa-miR-340 from mirbase.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 0.0001127 818 0.002357 34 microRNA targets for hsa-miR-101 from mirbase.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0001613 718 0.003185 35 microRNA targets for hsa-miR-26a from mirbase.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.0001569 539 0.003185 35 microRNA targets for hsa-miR-539 from mirbase.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.0001993 717 0.003831 37 microRNA targets for hsa-miR-146a from mirbase.targets www.mirbase.org...
Null hsa-miR-136* View Gene Set 0.0002335 557 0.004257 38 microRNA targets for hsa-miR-136* from mirbase.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.000231 574 0.004257 38 microRNA targets for hsa-miR-374b from mirbase.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 0.0002498 779 0.004398 40 microRNA targets for hsa-miR-376b from mirbase.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 0.0002536 570 0.004398 40 microRNA targets for hsa-miR-9* from mirbase.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.000262 769 0.004435 42 microRNA targets for hsa-miR-454 from mirbase.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 0.0003004 650 0.004968 43 microRNA targets for hsa-miR-889 from mirbase.targets www.mirbase.org...
Null hsa-miR-518e View Gene Set 0.0003395 923 0.005486 44 microRNA targets for hsa-miR-518e from mirbase.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.0003864 708 0.006104 45 microRNA targets for hsa-miR-524-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.0004881 871 0.007216 46 microRNA targets for hsa-miR-200c from mirbase.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.0004973 745 0.007216 46 microRNA targets for hsa-miR-216b from mirbase.targets www.mirbase.org...
Null hsa-miR-452* View Gene Set 0.000484 532 0.007216 46 microRNA targets for hsa-miR-452* from mirbase.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.0004793 649 0.007216 46 microRNA targets for hsa-miR-568 from mirbase.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 0.0005859 548 0.008332 50 microRNA targets for hsa-miR-374a from mirbase.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 0.0006227 731 0.008589 51 microRNA targets for hsa-miR-194 from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 0.0006281 818 0.008589 51 microRNA targets for hsa-miR-548b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.0006412 628 0.008602 53 microRNA targets for hsa-miR-203 from mirbase.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.000733 724 0.009407 54 microRNA targets for hsa-miR-21 from mirbase.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 0.0007229 771 0.009407 54 microRNA targets for hsa-miR-320 from mirbase.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 0.0007541 654 0.009407 54 microRNA targets for hsa-miR-409-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.0007436 739 0.009407 54 microRNA targets for hsa-miR-587 from mirbase.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 0.0008121 596 0.009955 58 microRNA targets for hsa-miR-606 from mirbase.targets www.mirbase.org...
Null hsa-miR-208 View Gene Set 0.0009011 664 0.01086 59 microRNA targets for hsa-miR-208 from mirbase.targets www.mirbase.org...
Null hsa-miR-943 View Gene Set 0.00103 680 0.01221 60 microRNA targets for hsa-miR-943 from mirbase.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.001074 689 0.01252 61 microRNA targets for hsa-miR-935 from mirbase.targets www.mirbase.org...
Null hsa-miR-558 View Gene Set 0.001139 618 0.01306 62 microRNA targets for hsa-miR-558 from mirbase.targets www.mirbase.org...
Null hsa-miR-128a View Gene Set 0.001229 811 0.01387 63 microRNA targets for hsa-miR-128a from mirbase.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.001377 736 0.01514 64 microRNA targets for hsa-miR-377 from mirbase.targets www.mirbase.org...
Null hsa-miR-498 View Gene Set 0.001384 744 0.01514 64 microRNA targets for hsa-miR-498 from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 0.00148 899 0.01595 66 microRNA targets for hsa-miR-548a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-487b View Gene Set 0.001505 670 0.01597 67 microRNA targets for hsa-miR-487b from mirbase.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.001552 614 0.01623 68 microRNA targets for hsa-miR-372 from mirbase.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 0.001613 657 0.01662 69 microRNA targets for hsa-miR-488 from mirbase.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 0.001768 654 0.01796 70 microRNA targets for hsa-miR-655 from mirbase.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.001813 770 0.01816 71 microRNA targets for hsa-miR-768-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.002006 776 0.01941 72 microRNA targets for hsa-miR-34b from mirbase.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.002015 667 0.01941 72 microRNA targets for hsa-miR-603 from mirbase.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.00202 514 0.01941 72 microRNA targets for hsa-miR-656 from mirbase.targets www.mirbase.org...
Null hsa-miR-628-5p View Gene Set 0.00205 829 0.01943 75 microRNA targets for hsa-miR-628-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.0021 812 0.01965 76 microRNA targets for hsa-miR-141 from mirbase.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.002252 589 0.02079 77 microRNA targets for hsa-miR-186 from mirbase.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.002308 796 0.02104 78 microRNA targets for hsa-miR-144 from mirbase.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.002434 665 0.02191 79 microRNA targets for hsa-miR-522 from mirbase.targets www.mirbase.org...
Null hsa-miR-576-3p View Gene Set 0.002485 714 0.02209 80 microRNA targets for hsa-miR-576-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.002525 807 0.02216 81 microRNA targets for hsa-miR-30b from mirbase.targets www.mirbase.org...
Null hsa-let-7c* View Gene Set 0.002598 755 0.02227 82 microRNA targets for hsa-let-7c* from mirbase.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.002663 817 0.02227 82 microRNA targets for hsa-miR-15a from mirbase.targets www.mirbase.org...
Null hsa-miR-302d* View Gene Set 0.002637 693 0.02227 82 microRNA targets for hsa-miR-302d* from mirbase.targets www.mirbase.org...
Null hsa-miR-380* View Gene Set 0.002611 585 0.02227 82 microRNA targets for hsa-miR-380* from mirbase.targets www.mirbase.org...
Null hsa-miR-30d* View Gene Set 0.002711 717 0.02241 86 microRNA targets for hsa-miR-30d* from mirbase.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.002782 803 0.02248 87 microRNA targets for hsa-miR-212 from mirbase.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 0.002755 463 0.02248 87 microRNA targets for hsa-miR-559 from mirbase.targets www.mirbase.org...
Null hsa-miR-196b View Gene Set 0.002828 771 0.02259 89 microRNA targets for hsa-miR-196b from mirbase.targets www.mirbase.org...
Null hsa-miR-126* View Gene Set 0.002879 549 0.02275 90 microRNA targets for hsa-miR-126* from mirbase.targets www.mirbase.org...
Null hsa-miR-95 View Gene Set 0.002971 787 0.02322 91 microRNA targets for hsa-miR-95 from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.003424 763 0.02646 92 microRNA targets for hsa-miR-548a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.00385 719 0.0292 93 microRNA targets for hsa-miR-105 from mirbase.targets www.mirbase.org...
Null hsa-miR-30a* View Gene Set 0.003901 726 0.0292 93 microRNA targets for hsa-miR-30a* from mirbase.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.003901 883 0.0292 93 microRNA targets for hsa-miR-518b from mirbase.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.003951 765 0.02926 96 microRNA targets for hsa-miR-330-3p from mirbase.targets www.mirbase.org...
Null hsa-let-7g* View Gene Set 0.004042 827 0.02963 97 microRNA targets for hsa-let-7g* from mirbase.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.004189 809 0.02978 98 microRNA targets for hsa-miR-130b from mirbase.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.00415 796 0.02978 98 microRNA targets for hsa-miR-495 from mirbase.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.004143 603 0.02978 98 microRNA targets for hsa-miR-570 from mirbase.targets www.mirbase.org...
Null hsa-miR-642 View Gene Set 0.004354 609 0.03065 101 microRNA targets for hsa-miR-642 from mirbase.targets www.mirbase.org...
Null hsa-miR-337-3p View Gene Set 0.004517 726 0.03118 102 microRNA targets for hsa-miR-337-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.004479 814 0.03118 102 microRNA targets for hsa-miR-338-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.004781 745 0.03269 104 microRNA targets for hsa-miR-153 from mirbase.targets www.mirbase.org...
Null hsa-miR-187* View Gene Set 0.004835 557 0.03274 105 microRNA targets for hsa-miR-187* from mirbase.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.005015 763 0.03364 106 microRNA targets for hsa-miR-301b from mirbase.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.005069 746 0.03369 107 microRNA targets for hsa-miR-376a from mirbase.targets www.mirbase.org...
Null hsa-miR-365 View Gene Set 0.005282 828 0.03457 108 microRNA targets for hsa-miR-365 from mirbase.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 0.005301 763 0.03457 108 microRNA targets for hsa-miR-376c from mirbase.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.005378 740 0.03476 110 microRNA targets for hsa-miR-155 from mirbase.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.005748 683 0.03682 111 microRNA targets for hsa-miR-802 from mirbase.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.005801 659 0.03683 112 microRNA targets for hsa-miR-1 from mirbase.targets www.mirbase.org...
Null hsa-miR-369-5p View Gene Set 0.005917 778 0.03723 113 microRNA targets for hsa-miR-369-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-890 View Gene Set 0.006014 713 0.03751 114 microRNA targets for hsa-miR-890 from mirbase.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.006244 774 0.03795 115 microRNA targets for hsa-miR-106a from mirbase.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.006238 795 0.03795 115 microRNA targets for hsa-miR-15b from mirbase.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.006157 935 0.03795 115 microRNA targets for hsa-miR-17 from mirbase.targets www.mirbase.org...
Null hsa-miR-516a-5p View Gene Set 0.006613 788 0.03939 118 microRNA targets for hsa-miR-516a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.006649 842 0.03939 118 microRNA targets for hsa-miR-520a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-598 View Gene Set 0.006566 720 0.03939 118 microRNA targets for hsa-miR-598 from mirbase.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.006758 824 0.03944 121 microRNA targets for hsa-miR-455-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-499-3p View Gene Set 0.006767 718 0.03944 121 microRNA targets for hsa-miR-499-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 0.006993 802 0.04042 123 microRNA targets for hsa-miR-506 from mirbase.targets www.mirbase.org...
Null hsa-miR-556-5p View Gene Set 0.007551 739 0.0433 124 microRNA targets for hsa-miR-556-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.008039 801 0.04573 125 microRNA targets for hsa-miR-548c-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-449a View Gene Set 0.008154 749 0.04601 126 microRNA targets for hsa-miR-449a from mirbase.targets www.mirbase.org...
Null hsa-miR-302c* View Gene Set 0.008411 615 0.04709 127 microRNA targets for hsa-miR-302c* from mirbase.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 0.008735 729 0.04831 128 microRNA targets for hsa-miR-452 from mirbase.targets www.mirbase.org...
Null hsa-miR-486-5p View Gene Set 0.008834 729 0.04831 128 microRNA targets for hsa-miR-486-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 0.008774 689 0.04831 128 microRNA targets for hsa-miR-487a from mirbase.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 0.009047 921 0.0491 131 microRNA targets for hsa-miR-518c from mirbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.009295 780 0.04976 132 microRNA targets for hsa-miR-16 from mirbase.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.009309 750 0.04976 132 microRNA targets for hsa-miR-369-3p from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548c-3p View Gene Set 6.292e-10 1804 3.479e-07 1 microRNA targets for hsa-miR-548c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 8.233e-09 2046 2.276e-06 2 microRNA targets for hsa-miR-590-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 5.464e-07 396 0.0001007 3 microRNA targets for hsa-miR-515-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 2.007e-06 1151 0.0002774 4 microRNA targets for hsa-miR-548c-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 3.774e-06 432 0.0003064 5 microRNA targets for hsa-miR-124 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 3.878e-06 1120 0.0003064 5 microRNA targets for hsa-miR-548a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 3.062e-06 1157 0.0003064 5 microRNA targets for hsa-miR-548b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 6.695e-06 1137 0.0004628 8 microRNA targets for hsa-miR-607 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 8.537e-06 1147 0.0005246 9 microRNA targets for hsa-miR-548d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 1.546e-05 439 0.0008551 10 microRNA targets for hsa-miR-506 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 2.318e-05 977 0.001165 11 microRNA targets for hsa-miR-559 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-938 View Gene Set 3.861e-05 97 0.001779 12 microRNA targets for hsa-miR-938 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 5.343e-05 1193 0.001853 13 microRNA targets for hsa-miR-561 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 4.722e-05 983 0.001853 13 microRNA targets for hsa-miR-570 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 5.361e-05 731 0.001853 13 microRNA targets for hsa-miR-577 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 5.119e-05 820 0.001853 13 microRNA targets for hsa-miR-655 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-892a View Gene Set 6.87e-05 352 0.002235 17 microRNA targets for hsa-miR-892a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 7.438e-05 536 0.002285 18 microRNA targets for hsa-miR-19b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 0.0001225 900 0.003567 19 microRNA targets for hsa-miR-548a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 0.0001433 589 0.003962 20 microRNA targets for hsa-miR-200a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.000174 539 0.004452 21 microRNA targets for hsa-miR-19a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 0.0001983 696 0.004452 21 microRNA targets for hsa-miR-494 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 0.0002013 282 0.004452 21 microRNA targets for hsa-miR-606 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.0001865 333 0.004452 21 microRNA targets for hsa-miR-768-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.0002011 450 0.004452 21 microRNA targets for hsa-miR-888 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.0002306 484 0.004723 26 microRNA targets for hsa-miR-544 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 0.0002264 625 0.004723 26 microRNA targets for hsa-miR-579 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-34c-3p View Gene Set 0.0002553 230 0.005041 28 microRNA targets for hsa-miR-34c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 0.0002888 550 0.005274 29 microRNA targets for hsa-miR-320 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.0002957 496 0.005274 29 microRNA targets for hsa-miR-380 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 0.0002949 1119 0.005274 29 microRNA targets for hsa-miR-513-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 0.0003515 251 0.006074 32 microRNA targets for hsa-miR-384 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.0003904 184 0.006388 33 microRNA targets for hsa-miR-455-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-455-5p View Gene Set 0.0003927 126 0.006388 33 microRNA targets for hsa-miR-455-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.0004327 574 0.006466 35 microRNA targets for hsa-miR-141 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.000423 314 0.006466 35 microRNA targets for hsa-miR-212 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.0004281 544 0.006466 35 microRNA targets for hsa-miR-381 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 0.0004583 486 0.00667 38 microRNA targets for hsa-miR-519a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 0.0004859 600 0.006889 39 microRNA targets for hsa-miR-545 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.0005974 862 0.008259 40 microRNA targets for hsa-miR-524-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0006478 498 0.008635 41 microRNA targets for hsa-miR-26a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 0.0006558 1107 0.008635 41 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 0.0006771 484 0.008708 43 microRNA targets for hsa-miR-519b-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.000735 754 0.009238 44 microRNA targets for hsa-miR-203 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.0007775 440 0.009554 45 microRNA targets for hsa-miR-130a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-220b View Gene Set 0.0008051 210 0.009679 46 microRNA targets for hsa-miR-220b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.0008637 312 0.009989 47 microRNA targets for hsa-miR-21 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.000867 875 0.009989 47 microRNA targets for hsa-miR-23b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 0.0008903 275 0.01005 49 microRNA targets for hsa-miR-590-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 0.0009851 296 0.01089 50 microRNA targets for hsa-miR-132 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.001171 445 0.0121 51 microRNA targets for hsa-miR-130b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.001225 754 0.0121 51 microRNA targets for hsa-miR-20a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.001156 858 0.0121 51 microRNA targets for hsa-miR-23a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.001204 874 0.0121 51 microRNA targets for hsa-miR-340 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.001205 1246 0.0121 51 microRNA targets for hsa-miR-495 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.001224 423 0.0121 51 microRNA targets for hsa-miR-9 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 0.001257 528 0.01219 57 microRNA targets for hsa-miR-300 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.00143 736 0.01332 58 microRNA targets for hsa-miR-106b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.001435 682 0.01332 58 microRNA targets for hsa-miR-330-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-498 View Gene Set 0.001446 326 0.01332 58 microRNA targets for hsa-miR-498 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.001509 876 0.01368 61 microRNA targets for hsa-miR-656 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.001713 435 0.01503 62 microRNA targets for hsa-miR-372 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 0.0017 493 0.01503 62 microRNA targets for hsa-miR-519c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.001777 1020 0.01513 64 microRNA targets for hsa-miR-186 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.001793 218 0.01513 64 microRNA targets for hsa-miR-370 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.001821 826 0.01513 64 microRNA targets for hsa-miR-520d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.001833 570 0.01513 64 microRNA targets for hsa-miR-871 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.001943 493 0.0158 68 microRNA targets for hsa-miR-26b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-192 View Gene Set 0.002361 121 0.01893 69 microRNA targets for hsa-miR-192 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.002543 240 0.02009 70 microRNA targets for hsa-miR-183 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-549 View Gene Set 0.003122 200 0.02431 71 microRNA targets for hsa-miR-549 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-329 View Gene Set 0.003362 242 0.02582 72 microRNA targets for hsa-miR-329 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 0.003705 365 0.02807 73 microRNA targets for hsa-miR-217 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 0.003871 303 0.02893 74 microRNA targets for hsa-miR-633 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 0.004162 245 0.03069 75 microRNA targets for hsa-miR-891b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.004616 283 0.03358 76 microRNA targets for hsa-miR-935 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-512-5p View Gene Set 0.005062 214 0.03636 77 microRNA targets for hsa-miR-512-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-371-5p View Gene Set 0.005279 354 0.03743 78 microRNA targets for hsa-miR-371-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-588 View Gene Set 0.005544 184 0.03881 79 microRNA targets for hsa-miR-588 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.005844 948 0.03894 80 microRNA targets for hsa-miR-338-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-450b-5p View Gene Set 0.00583 691 0.03894 80 microRNA targets for hsa-miR-450b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.005844 442 0.03894 80 microRNA targets for hsa-miR-454 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-504 View Gene Set 0.005832 127 0.03894 80 microRNA targets for hsa-miR-504 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-188-3p View Gene Set 0.006355 319 0.03968 84 microRNA targets for hsa-miR-188-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.006221 671 0.03968 84 microRNA targets for hsa-miR-200b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-487b View Gene Set 0.006376 24 0.03968 84 microRNA targets for hsa-miR-487b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-628-5p View Gene Set 0.006156 147 0.03968 84 microRNA targets for hsa-miR-628-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 0.006201 273 0.03968 84 microRNA targets for hsa-miR-873 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-885-5p View Gene Set 0.006386 167 0.03968 84 microRNA targets for hsa-miR-885-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 0.006609 262 0.03973 90 microRNA targets for hsa-miR-199a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-199b-3p View Gene Set 0.006609 262 0.03973 90 microRNA targets for hsa-miR-199b-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.006491 659 0.03973 90 microRNA targets for hsa-miR-641 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.007059 491 0.04168 93 microRNA targets for hsa-miR-195 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-365 View Gene Set 0.007168 156 0.04168 93 microRNA targets for hsa-miR-365 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.007112 404 0.04168 93 microRNA targets for hsa-miR-373 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.007235 590 0.04168 93 microRNA targets for hsa-miR-587 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-299-5p View Gene Set 0.007314 163 0.0417 97 microRNA targets for hsa-miR-299-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.007522 781 0.04244 98 microRNA targets for hsa-miR-106a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.007782 668 0.04347 99 microRNA targets for hsa-miR-200c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 0.008396 448 0.04636 100 microRNA targets for