Results

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Go to: Gene Set Collection: KEGG
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Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.cell-map
Go to: Gene Set Collection: pathwayCommons.nci-nature
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Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: mirbase.targets
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Go to: Gene Set Collection: tfbsK3Z3

AFA results for: tSAHAda4DU

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04110 View Gene Set 1.675e-10 128 3.584e-08 1 Cell cycle www.genome.jp/d...
KEGG 00240 View Gene Set 1.307e-07 99 1.399e-05 2 Pyrimidine metabolism www.genome.jp/d...
KEGG 03010 View Gene Set 1.089e-06 88 7.769e-05 3 Ribosome www.genome.jp/d...
KEGG 03040 View Gene Set 3.218e-06 128 0.0001722 4 Spliceosome www.genome.jp/d...
KEGG 03410 View Gene Set 1.178e-05 34 0.000504 5 Base excision repair www.genome.jp/d...
KEGG 04145 View Gene Set 7.878e-05 158 0.00281 6 Phagosome www.genome.jp/d...
KEGG 01100 View Gene Set 0.0001196 1120 0.003657 7 Metabolic pathways www.genome.jp/d...
KEGG 03030 View Gene Set 0.0001638 36 0.004382 8 DNA replication www.genome.jp/d...
KEGG 04114 View Gene Set 0.0003939 114 0.009367 9 Oocyte meiosis www.genome.jp/d...
KEGG 03020 View Gene Set 0.0004703 29 0.01007 10 RNA polymerase www.genome.jp/d...
KEGG 03420 View Gene Set 0.0007133 44 0.01272 11 Nucleotide excision repair www.genome.jp/d...
KEGG 05219 View Gene Set 0.0007016 42 0.01272 11 Bladder cancer www.genome.jp/d...
KEGG 00230 View Gene Set 0.0008361 161 0.01278 13 Purine metabolism www.genome.jp/d...
KEGG 04115 View Gene Set 0.0007878 69 0.01278 13 p53 signaling pathway www.genome.jp/d...
KEGG 04120 View Gene Set 0.001281 139 0.01828 15 Ubiquitin mediated proteolysis www.genome.jp/d...
KEGG 03050 View Gene Set 0.001664 48 0.02225 16 Proteasome www.genome.jp/d...
KEGG 03060 View Gene Set 0.001973 24 0.02365 17 Protein export www.genome.jp/d...
KEGG 03440 View Gene Set 0.001989 28 0.02365 17 Homologous recombination www.genome.jp/d...
KEGG 04612 View Gene Set 0.002172 78 0.02446 19 Antigen processing and presentation www.genome.jp/d...
KEGG 04141 View Gene Set 0.002557 167 0.02606 20 Protein processing in endoplasmic reticulum www.genome.jp/d...
KEGG 05222 View Gene Set 0.002471 84 0.02606 20 Small cell lung cancer www.genome.jp/d...
KEGG 00970 View Gene Set 0.003812 41 0.03708 22 Aminoacyl-tRNA biosynthesis www.genome.jp/d...
KEGG 00620 View Gene Set 0.004188 40 0.03897 23 Pyruvate metabolism www.genome.jp/d...
KEGG 00190 View Gene Set 0.004917 134 0.04047 24 Oxidative phosphorylation www.genome.jp/d...
KEGG 00480 View Gene Set 0.004694 50 0.04047 24 Glutathione metabolism www.genome.jp/d...
KEGG 04914 View Gene Set 0.004779 87 0.04047 24 Progesterone-mediated oocyte maturation www.genome.jp/d...
KEGG 03430 View Gene Set 0.006037 23 0.04785 27 Mismatch repair www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0044424 View Gene Set 1.775e-71 10976 2.372e-67 1 intracellular part amigo.geneontol...
GO GO:0005622 View Gene Set 3.459e-69 11329 2.31e-65 2 intracellular amigo.geneontol...
GO GO:0043229 View Gene Set 4.031e-66 9346 1.795e-62 3 intracellular organelle amigo.geneontol...
GO GO:0043226 View Gene Set 1.145e-65 9360 3.746e-62 4 organelle amigo.geneontol...
GO GO:0043227 View Gene Set 1.402e-65 8383 3.746e-62 4 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 4.219e-65 8376 9.393e-62 6 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0044446 View Gene Set 2.12e-61 5019 4.047e-58 7 intracellular organelle part amigo.geneontol...
GO GO:0044422 View Gene Set 6.74e-61 5089 1.126e-57 8 organelle part amigo.geneontol...
GO GO:0005737 View Gene Set 6.868e-51 7676 1.02e-47 9 cytoplasm amigo.geneontol...
GO GO:0070013 View Gene Set 1.885e-47 1845 2.519e-44 10 intracellular organelle lumen amigo.geneontol...
GO GO:0031974 View Gene Set 2.941e-47 1917 3.571e-44 11 membrane-enclosed lumen amigo.geneontol...
GO GO:0043233 View Gene Set 7.836e-47 1881 8.724e-44 12 organelle lumen amigo.geneontol...
GO GO:0044428 View Gene Set 1.331e-42 1938 1.368e-39 13 nuclear part amigo.geneontol...
GO GO:0044444 View Gene Set 1.385e-39 5184 1.321e-36 14 cytoplasmic part amigo.geneontol...
GO GO:0031981 View Gene Set 4.004e-36 1518 3.566e-33 15 nuclear lumen amigo.geneontol...
GO GO:0005634 View Gene Set 5.114e-35 5198 4.27e-32 16 nucleus amigo.geneontol...
GO GO:0032991 View Gene Set 5.047e-32 3237 3.966e-29 17 macromolecular complex amigo.geneontol...
GO GO:0007049 View Gene Set 1.511e-30 1006 1.122e-27 18 cell cycle amigo.geneontol...
GO GO:0043228 View Gene Set 2.832e-30 2690 1.892e-27 19 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 2.832e-30 2690 1.892e-27 19 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0000278 View Gene Set 3.649e-27 489 2.322e-24 21 mitotic cell cycle amigo.geneontol...
GO GO:0022402 View Gene Set 2.383e-26 676 1.384e-23 22 cell cycle process amigo.geneontol...
GO GO:0005739 View Gene Set 2.293e-26 1274 1.384e-23 22 mitochondrion amigo.geneontol...
GO GO:0022403 View Gene Set 3.791e-25 522 2.11e-22 24 cell cycle phase amigo.geneontol...
GO GO:0000279 View Gene Set 5.005e-25 406 2.675e-22 25 M phase amigo.geneontol...
GO GO:0030529 View Gene Set 2.056e-24 504 1.057e-21 26 ribonucleoprotein complex amigo.geneontol...
GO GO:0005654 View Gene Set 3.887e-24 939 1.923e-21 27 nucleoplasm amigo.geneontol...
GO GO:0044260 View Gene Set 5.301e-24 5699 2.529e-21 28 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0044237 View Gene Set 1.229e-23 7431 5.662e-21 29 cellular metabolic process amigo.geneontol...
GO GO:0000280 View Gene Set 3.818e-23 276 1.645e-20 30 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 3.818e-23 276 1.645e-20 30 mitosis amigo.geneontol...
GO GO:0006996 View Gene Set 7.027e-23 1501 2.934e-20 32 organelle organization amigo.geneontol...
GO GO:0000087 View Gene Set 1.557e-22 286 6.302e-20 33 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0048285 View Gene Set 2.483e-22 286 9.757e-20 34 organelle fission amigo.geneontol...
GO GO:0005515 View Gene Set 1.192e-21 8146 4.55e-19 35 protein binding amigo.geneontol...
GO GO:0006396 View Gene Set 4.119e-21 578 1.529e-18 36 RNA processing amigo.geneontol...
GO GO:0016043 View Gene Set 6.179e-21 2937 2.231e-18 37 cellular component organization amigo.geneontol...
GO GO:0003723 View Gene Set 2.23e-20 732 7.84e-18 38 RNA binding amigo.geneontol...
GO GO:0043234 View Gene Set 2.849e-18 2680 9.76e-16 39 protein complex amigo.geneontol...
GO GO:0009987 View Gene Set 4.22e-18 11620 1.41e-15 40 cellular process amigo.geneontol...
GO GO:0005730 View Gene Set 5.568e-18 734 1.814e-15 41 nucleolus amigo.geneontol...
GO GO:0051301 View Gene Set 8.256e-18 358 2.626e-15 42 cell division amigo.geneontol...
GO GO:0008152 View Gene Set 4.062e-17 8439 1.262e-14 43 metabolic process amigo.geneontol...
GO GO:0044085 View Gene Set 4.419e-17 1167 1.342e-14 44 cellular component biogenesis amigo.geneontol...
GO GO:0005819 View Gene Set 7.78e-17 167 2.31e-14 45 spindle amigo.geneontol...
GO GO:0043170 View Gene Set 1.038e-16 6274 3.013e-14 46 macromolecule metabolic process amigo.geneontol...
GO GO:0090304 View Gene Set 1.146e-16 3724 3.256e-14 47 nucleic acid metabolic process amigo.geneontol...
GO GO:0034641 View Gene Set 1.354e-16 4584 3.767e-14 48 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0006259 View Gene Set 1.724e-16 592 4.699e-14 49 DNA metabolic process amigo.geneontol...
GO GO:0005488 View Gene Set 2.299e-16 12334 6.142e-14 50 binding amigo.geneontol...
GO GO:0006139 View Gene Set 5.584e-16 4294 1.463e-13 51 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0008380 View Gene Set 7.553e-16 300 1.941e-13 52 RNA splicing amigo.geneontol...
GO GO:0044238 View Gene Set 9.228e-16 7629 2.283e-13 53 primary metabolic process amigo.geneontol...
GO GO:0015630 View Gene Set 9.151e-16 587 2.283e-13 53 microtubule cytoskeleton amigo.geneontol...
GO GO:0006807 View Gene Set 2.811e-15 4698 6.827e-13 55 nitrogen compound metabolic process amigo.geneontol...
GO GO:0000775 View Gene Set 5.96e-15 146 1.422e-12 56 chromosome centromeric region amigo.geneontol...
GO GO:0005829 View Gene Set 1.533e-14 1323 3.592e-12 57 cytosol amigo.geneontol...
GO GO:0006974 View Gene Set 2.969e-14 412 6.839e-12 58 response to DNA damage stimulus amigo.geneontol...
GO GO:0022607 View Gene Set 2.822e-13 1043 6.39e-11 59 cellular component assembly amigo.geneontol...
GO GO:0044267 View Gene Set 5.033e-13 2465 1.121e-10 60 cellular protein metabolic process amigo.geneontol...
GO GO:0007059 View Gene Set 6.379e-13 94 1.397e-10 61 chromosome segregation amigo.geneontol...
GO GO:0044429 View Gene Set 6.608e-13 619 1.424e-10 62 mitochondrial part amigo.geneontol...
GO GO:0044451 View Gene Set 8.05e-13 600 1.707e-10 63 nucleoplasm part amigo.geneontol...
GO GO:0003676 View Gene Set 8.48e-13 2979 1.77e-10 64 nucleic acid binding amigo.geneontol...
GO GO:0005840 View Gene Set 8.865e-13 198 1.822e-10 65 ribosome amigo.geneontol...
GO GO:0044464 View Gene Set 9.19e-13 15066 1.86e-10 66 cell part amigo.geneontol...
GO GO:0005623 View Gene Set 1.016e-12 15067 2.025e-10 67 cell amigo.geneontol...
GO GO:0016071 View Gene Set 1.061e-12 381 2.084e-10 68 mRNA metabolic process amigo.geneontol...
GO GO:0006281 View Gene Set 1.168e-12 309 2.261e-10 69 DNA repair amigo.geneontol...
GO GO:0010467 View Gene Set 1.271e-12 3806 2.426e-10 70 gene expression amigo.geneontol...
GO GO:0006412 View Gene Set 1.626e-12 412 3.059e-10 71 translation amigo.geneontol...
GO GO:0005694 View Gene Set 1.722e-12 507 3.196e-10 72 chromosome amigo.geneontol...
GO GO:0006397 View Gene Set 2.051e-12 317 3.754e-10 73 mRNA processing amigo.geneontol...
GO GO:0000777 View Gene Set 3.146e-12 74 5.68e-10 74 condensed chromosome kinetochore amigo.geneontol...
GO GO:0033554 View Gene Set 3.818e-12 698 6.802e-10 75 cellular response to stress amigo.geneontol...
GO GO:0005759 View Gene Set 4.02e-12 223 6.974e-10 76 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 4.02e-12 223 6.974e-10 76 mitochondrial lumen amigo.geneontol...
GO GO:0000779 View Gene Set 4.241e-12 79 7.263e-10 78 condensed chromosome centromeric region amigo.geneontol...
GO GO:0044427 View Gene Set 7.265e-12 420 1.229e-09 79 chromosomal part amigo.geneontol...
GO GO:0000776 View Gene Set 8.427e-12 92 1.407e-09 80 kinetochore amigo.geneontol...
GO GO:0000793 View Gene Set 8.912e-12 136 1.47e-09 81 condensed chromosome amigo.geneontol...
GO GO:0007017 View Gene Set 1.196e-11 281 1.949e-09 82 microtubule-based process amigo.geneontol...
GO GO:0051726 View Gene Set 1.492e-11 451 2.402e-09 83 regulation of cell cycle amigo.geneontol...
GO GO:0022613 View Gene Set 3.511e-11 194 5.584e-09 84 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0006260 View Gene Set 5.071e-11 239 7.97e-09 85 DNA replication amigo.geneontol...
GO GO:0003735 View Gene Set 7.283e-11 158 1.131e-08 86 structural constituent of ribosome amigo.geneontol...
GO GO:0000226 View Gene Set 1.062e-10 178 1.631e-08 87 microtubule cytoskeleton organization amigo.geneontol...
GO GO:0065003 View Gene Set 1.502e-10 763 2.28e-08 88 macromolecular complex assembly amigo.geneontol...
GO GO:0043933 View Gene Set 2.981e-10 836 4.475e-08 89 macromolecular complex subunit organization amigo.geneontol...
GO GO:0033279 View Gene Set 3.022e-10 121 4.486e-08 90 ribosomal subunit amigo.geneontol...
GO GO:0051276 View Gene Set 4.094e-10 548 6.011e-08 91 chromosome organization amigo.geneontol...
GO GO:0007051 View Gene Set 5.167e-10 57 7.504e-08 92 spindle organization amigo.geneontol...
GO GO:0032446 View Gene Set 9.684e-10 310 1.391e-07 93 protein modification by small protein conjugation amigo.geneontol...
GO GO:0003824 View Gene Set 1.078e-09 5198 1.533e-07 94 catalytic activity amigo.geneontol...
GO GO:0051340 View Gene Set 2.634e-09 85 3.704e-07 95 regulation of ligase activity amigo.geneontol...
GO GO:0000075 View Gene Set 3.012e-09 109 4.192e-07 96 cell cycle checkpoint amigo.geneontol...
GO GO:0016567 View Gene Set 5.217e-09 286 7.185e-07 97 protein ubiquitination amigo.geneontol...
GO GO:0034621 View Gene Set 6.053e-09 458 8.252e-07 98 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0034645 View Gene Set 6.399e-09 3529 8.635e-07 99 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0031967 View Gene Set 6.651e-09 672 8.885e-07 100 organelle envelope amigo.geneontol...
GO GO:0016604 View Gene Set 8.042e-09 198 1.064e-06 101 nuclear body amigo.geneontol...
GO GO:0051351 View Gene Set 8.71e-09 74 1.141e-06 102 positive regulation of ligase activity amigo.geneontol...
GO GO:0010498 View Gene Set 9.062e-09 166 1.175e-06 103 proteasomal protein catabolic process amigo.geneontol...
GO GO:0051438 View Gene Set 9.434e-09 82 1.212e-06 104 regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0031975 View Gene Set 1.045e-08 685 1.33e-06 105 envelope amigo.geneontol...
GO GO:0000922 View Gene Set 1.124e-08 63 1.417e-06 106 spindle pole amigo.geneontol...
GO GO:0005681 View Gene Set 1.304e-08 135 1.629e-06 107 spliceosomal complex amigo.geneontol...
GO GO:0006461 View Gene Set 1.354e-08 595 1.644e-06 108 protein complex assembly amigo.geneontol...
GO GO:0046907 View Gene Set 1.337e-08 753 1.644e-06 108 intracellular transport amigo.geneontol...
GO GO:0070271 View Gene Set 1.354e-08 595 1.644e-06 108 protein complex biogenesis amigo.geneontol...
GO GO:0031902 View Gene Set 1.782e-08 64 2.126e-06 111 late endosome membrane amigo.geneontol...
GO GO:0016817 View Gene Set 1.782e-08 769 2.126e-06 111 hydrolase activity acting on acid anhydrides amigo.geneontol...
GO GO:0004386 View Gene Set 1.808e-08 144 2.138e-06 113 helicase activity amigo.geneontol...
GO GO:0016818 View Gene Set 1.944e-08 765 2.278e-06 114 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides amigo.geneontol...
GO GO:0016462 View Gene Set 2.745e-08 762 3.189e-06 115 pyrophosphatase activity amigo.geneontol...
GO GO:0017111 View Gene Set 2.926e-08 733 3.37e-06 116 nucleoside-triphosphatase activity amigo.geneontol...
GO GO:0034622 View Gene Set 2.992e-08 393 3.417e-06 117 cellular macromolecular complex assembly amigo.geneontol...
GO GO:0070647 View Gene Set 3.094e-08 356 3.504e-06 118 protein modification by small protein conjugation or removal amigo.geneontol...
GO GO:0005815 View Gene Set 3.139e-08 277 3.524e-06 119 microtubule organizing center amigo.geneontol...
GO GO:0051443 View Gene Set 3.195e-08 71 3.557e-06 120 positive regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0031398 View Gene Set 3.476e-08 95 3.838e-06 121 positive regulation of protein ubiquitination amigo.geneontol...
GO GO:0019538 View Gene Set 3.674e-08 2935 4.023e-06 122 protein metabolic process amigo.geneontol...
GO GO:0043161 View Gene Set 3.805e-08 162 4.133e-06 123 proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0005874 View Gene Set 4.148e-08 284 4.469e-06 124 microtubule amigo.geneontol...
GO GO:0034470 View Gene Set 4.976e-08 193 5.318e-06 125 ncRNA processing amigo.geneontol...
GO GO:0007005 View Gene Set 5.116e-08 139 5.424e-06 126 mitochondrion organization amigo.geneontol...
GO GO:0044249 View Gene Set 5.72e-08 4326 6.018e-06 127 cellular biosynthetic process amigo.geneontol...
GO GO:0034660 View Gene Set 5.771e-08 236 6.024e-06 128 ncRNA metabolic process amigo.geneontol...
GO GO:0044430 View Gene Set 6.085e-08 979 6.302e-06 129 cytoskeletal part amigo.geneontol...
GO GO:0009059 View Gene Set 7.909e-08 3597 8.128e-06 130 macromolecule biosynthetic process amigo.geneontol...
GO GO:0031396 View Gene Set 8.155e-08 121 8.317e-06 131 regulation of protein ubiquitination amigo.geneontol...
GO GO:0009058 View Gene Set 8.579e-08 4436 8.683e-06 132 biosynthetic process amigo.geneontol...
GO GO:0031145 View Gene Set 9.646e-08 64 9.689e-06 133 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0000375 View Gene Set 1.24e-07 106 1.236e-05 134 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0051352 View Gene Set 1.357e-07 66 1.333e-05 135 negative regulation of ligase activity amigo.geneontol...
GO GO:0051444 View Gene Set 1.357e-07 66 1.333e-05 135 negative regulation of ubiquitin-protein ligase activity amigo.geneontol...
GO GO:0042254 View Gene Set 1.396e-07 130 1.361e-05 137 ribosome biogenesis amigo.geneontol...
GO GO:0051439 View Gene Set 1.535e-07 68 1.486e-05 138 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0051186 View Gene Set 2.578e-07 215 2.464e-05 139 cofactor metabolic process amigo.geneontol...
GO GO:0051436 View Gene Set 2.582e-07 62 2.464e-05 139 negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0051188 View Gene Set 2.996e-07 112 2.839e-05 141 cofactor biosynthetic process amigo.geneontol...
GO GO:0016070 View Gene Set 3.162e-07 2596 2.975e-05 142 RNA metabolic process amigo.geneontol...
GO GO:0000166 View Gene Set 3.548e-07 2257 3.314e-05 143 nucleotide binding amigo.geneontol...
GO GO:0022618 View Gene Set 4.556e-07 76 4.227e-05 144 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0006302 View Gene Set 5.957e-07 65 5.488e-05 145 double-strand break repair amigo.geneontol...
GO GO:0008026 View Gene Set 7.135e-07 105 6.485e-05 146 ATP-dependent helicase activity amigo.geneontol...
GO GO:0070035 View Gene Set 7.135e-07 105 6.485e-05 146 purine NTP-dependent helicase activity amigo.geneontol...
GO GO:0016072 View Gene Set 7.53e-07 101 6.798e-05 148 rRNA metabolic process amigo.geneontol...
GO GO:0051052 View Gene Set 7.952e-07 132 7.13e-05 149 regulation of DNA metabolic process amigo.geneontol...
GO GO:0005876 View Gene Set 8.077e-07 35 7.194e-05 150 spindle microtubule amigo.geneontol...
GO GO:0016887 View Gene Set 9.169e-07 339 8.112e-05 151 ATPase activity amigo.geneontol...
GO GO:0006457 View Gene Set 1.009e-06 172 8.871e-05 152 protein folding amigo.geneontol...
GO GO:0006414 View Gene Set 1.236e-06 104 0.000108 153 translational elongation amigo.geneontol...
GO GO:0015934 View Gene Set 1.328e-06 64 0.0001152 154 large ribosomal subunit amigo.geneontol...
GO GO:0000377 View Gene Set 1.377e-06 97 0.0001171 155 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 1.377e-06 97 0.0001171 155 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0006364 View Gene Set 1.372e-06 97 0.0001171 155 rRNA processing amigo.geneontol...
GO GO:0051437 View Gene Set 1.5e-06 64 0.0001268 158 positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0050000 View Gene Set 1.535e-06 17 0.0001282 159 chromosome localization amigo.geneontol...
GO GO:0051303 View Gene Set 1.535e-06 17 0.0001282 159 establishment of chromosome localization amigo.geneontol...
GO GO:0022626 View Gene Set 1.781e-06 75 0.0001478 161 cytosolic ribosome amigo.geneontol...
GO GO:0005740 View Gene Set 1.81e-06 444 0.0001493 162 mitochondrial envelope amigo.geneontol...
GO GO:0031090 View Gene Set 2.068e-06 1905 0.0001695 163 organelle membrane amigo.geneontol...
GO GO:0000228 View Gene Set 2.313e-06 177 0.0001884 164 nuclear chromosome amigo.geneontol...
GO GO:0031324 View Gene Set 2.33e-06 809 0.0001886 165 negative regulation of cellular metabolic process amigo.geneontol...
GO GO:0031397 View Gene Set 2.364e-06 78 0.0001902 166 negative regulation of protein ubiquitination amigo.geneontol...
GO GO:0000070 View Gene Set 2.458e-06 37 0.0001967 167 mitotic sister chromatid segregation amigo.geneontol...
GO GO:0010008 View Gene Set 2.539e-06 210 0.0002007 168 endosome membrane amigo.geneontol...
GO GO:0044440 View Gene Set 2.539e-06 210 0.0002007 168 endosomal part amigo.geneontol...
GO GO:0006310 View Gene Set 2.99e-06 130 0.000235 170 DNA recombination amigo.geneontol...
GO GO:0051329 View Gene Set 3.044e-06 138 0.0002378 171 interphase of mitotic cell cycle amigo.geneontol...
GO GO:0000819 View Gene Set 3.09e-06 38 0.00024 172 sister chromatid segregation amigo.geneontol...
GO GO:0007346 View Gene Set 4.324e-06 174 0.0003339 173 regulation of mitotic cell cycle amigo.geneontol...
GO GO:0006511 View Gene Set 4.592e-06 296 0.0003526 174 ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0051325 View Gene Set 5.049e-06 147 0.0003854 175 interphase amigo.geneontol...
GO GO:0044265 View Gene Set 5.237e-06 479 0.0003975 176 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0006839 View Gene Set 5.962e-06 75 0.00045 177 mitochondrial transport amigo.geneontol...
GO GO:0015935 View Gene Set 6.342e-06 59 0.000476 178 small ribosomal subunit amigo.geneontol...
GO GO:0044419 View Gene Set 6.72e-06 343 0.0005016 179 interspecies interaction between organisms amigo.geneontol...
GO GO:0019866 View Gene Set 7.317e-06 334 0.0005431 180 organelle inner membrane amigo.geneontol...
GO GO:0010212 View Gene Set 7.837e-06 68 0.0005757 181 response to ionizing radiation amigo.geneontol...
GO GO:0010605 View Gene Set 7.928e-06 827 0.0005757 181 negative regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0019941 View Gene Set 7.892e-06 302 0.0005757 181 modification-dependent protein catabolic process amigo.geneontol...
GO GO:0043632 View Gene Set 7.892e-06 302 0.0005757 181 modification-dependent macromolecule catabolic process amigo.geneontol...
GO GO:0042623 View Gene Set 8.053e-06 273 0.0005816 185 ATPase activity coupled amigo.geneontol...
GO GO:0031966 View Gene Set 8.828e-06 420 0.0006341 186 mitochondrial membrane amigo.geneontol...
GO GO:0051716 View Gene Set 8.977e-06 1102 0.0006414 187 cellular response to stimulus amigo.geneontol...
GO GO:0005856 View Gene Set 9.252e-06 1410 0.0006575 188 cytoskeleton amigo.geneontol...
GO GO:0070925 View Gene Set 9.632e-06 57 0.0006808 189 organelle assembly amigo.geneontol...
GO GO:0000086 View Gene Set 1.022e-05 31 0.0007187 190 G2/M transition of mitotic cell cycle amigo.geneontol...
GO GO:0009892 View Gene Set 1.073e-05 889 0.0007505 191 negative regulation of metabolic process amigo.geneontol...
GO GO:0007052 View Gene Set 1.207e-05 22 0.0008397 192 mitotic spindle organization amigo.geneontol...
GO GO:0015031 View Gene Set 1.737e-05 888 0.001202 193 protein transport amigo.geneontol...
GO GO:0005770 View Gene Set 1.814e-05 111 0.001249 194 late endosome amigo.geneontol...
GO GO:0007010 View Gene Set 1.957e-05 528 0.001335 195 cytoskeleton organization amigo.geneontol...
GO GO:0045184 View Gene Set 1.959e-05 904 0.001335 195 establishment of protein localization amigo.geneontol...
GO GO:0051603 View Gene Set 2.045e-05 346 0.001387 197 proteolysis involved in cellular protein catabolic process amigo.geneontol...
GO GO:0005743 View Gene Set 2.082e-05 305 0.001405 198 mitochondrial inner membrane amigo.geneontol...
GO GO:0006626 View Gene Set 2.224e-05 32 0.001463 199 protein targeting to mitochondrion amigo.geneontol...
GO GO:0070585 View Gene Set 2.224e-05 32 0.001463 199 protein localization in mitochondrion amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 1.162e-56 1180 2.779e-53 1 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 4.294e-54 1253 5.135e-51 2 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 1.158e-51 577 9.23e-49 3 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 4.403e-49 744 2.633e-46 4 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 2.53e-44 1582 1.21e-41 5 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 4.562e-43 1353 1.819e-40 6 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 7.55e-40 859 2.58e-37 7 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 7.833e-38 757 2.342e-35 8 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 2.651e-37 243 7.046e-35 9 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 1.757e-36 485 4.204e-34 10 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 7.605e-35 435 1.654e-32 11 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 2.307e-34 331 4.599e-32 12 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 6.786e-34 589 1.249e-31 13 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 8.701e-34 920 1.487e-31 14 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 7.709e-33 639 1.229e-30 15 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 2.805e-31 276 4.193e-29 16 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 6.354e-31 537 8.941e-29 17 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 9.992e-31 630 1.328e-28 18 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 2.614e-29 138 3.29e-27 19 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 1.578e-28 681 1.887e-26 20 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 1.741e-28 279 1.983e-26 21 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 4.657e-28 806 5.064e-26 22 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 1.193e-27 143 1.241e-25 23 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 2.848e-27 832 2.838e-25 24 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 1.731e-26 915 1.656e-24 25 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 2.098e-25 289 1.93e-23 26 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS View Gene Set 4.422e-25 855 3.917e-23 27 Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 4.842e-25 1045 4.137e-23 28 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 1.5e-24 599 1.237e-22 29 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 3.658e-24 408 2.822e-22 30 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES View Gene Set 3.608e-24 384 2.822e-22 30 Housekeeping genes identified as expressed across 19 normal tissues. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 8.81e-24 402 6.586e-22 32 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 1.834e-23 265 1.329e-21 33 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 2.296e-23 410 1.615e-21 34 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 2.984e-23 152 2.039e-21 35 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 4.569e-23 351 3.036e-21 36 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 8.232e-23 437 5.322e-21 37 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 2.373e-22 80 1.494e-20 38 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 6.457e-22 768 3.96e-20 39 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 1.05e-21 314 6.277e-20 40 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 1.095e-21 946 6.387e-20 41 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 1.957e-21 739 1.115e-19 42 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 5.232e-21 944 2.91e-19 43 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad BENPORATH_PROLIFERATION View Gene Set 7.292e-21 140 3.964e-19 44 Set 'Proliferation Cluster': genes defined in human breast tumor expression data. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 7.877e-21 290 4.187e-19 45 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 1.733e-20 332 9.011e-19 46 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 2.47e-20 139 1.257e-18 47 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 2.604e-20 370 1.298e-18 48 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 3.049e-20 241 1.488e-18 49 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 4.629e-20 711 2.214e-18 50 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 5.336e-20 532 2.503e-18 51 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 9.395e-20 475 4.322e-18 52 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 1.205e-19 180 5.44e-18 53 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 2.102e-19 1209 9.311e-18 54 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 2.474e-19 294 1.076e-17 55 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 2.889e-19 415 1.234e-17 56 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 4.478e-19 666 1.879e-17 57 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN View Gene Set 6.394e-19 444 2.637e-17 58 Genes down-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN View Gene Set 8.853e-19 431 3.589e-17 59 Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 9.741e-18 825 3.883e-16 60 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 3.112e-17 96 1.22e-15 61 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 4.032e-17 62 1.555e-15 62 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 4.973e-17 201 1.888e-15 63 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 9.311e-17 368 3.48e-15 64 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 9.592e-17 178 3.53e-15 65 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP View Gene Set 1.049e-16 263 3.765e-15 66 Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 1.055e-16 138 3.765e-15 66 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP View Gene Set 1.478e-16 135 5.199e-15 68 Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability. www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP View Gene Set 4.235e-16 144 1.468e-14 69 Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 4.53e-16 427 1.545e-14 70 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 4.586e-16 571 1.545e-14 70 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215 View Gene Set 4.876e-16 809 1.62e-14 72 Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 5.935e-16 303 1.945e-14 73 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 8.566e-16 469 2.769e-14 74 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 1.473e-15 657 4.697e-14 75 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 1.717e-15 182 5.405e-14 76 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 7.155e-15 213 2.223e-13 77 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 1.282e-14 203 3.931e-13 78 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP View Gene Set 1.744e-14 100 5.281e-13 79 Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959]. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP View Gene Set 1.83e-14 452 5.471e-13 80 Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP View Gene Set 2.652e-14 93 7.831e-13 81 Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 2.769e-14 1641 8.076e-13 82 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 7.833e-14 1375 2.257e-12 83 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 8.942e-14 164 2.546e-12 84 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP View Gene Set 1.28e-13 43 3.602e-12 85 Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN View Gene Set 1.763e-13 123 4.904e-12 86 Genes highly expressed in hepatocellular carcinoma with poor survival. www.broad.mit.e...
Broad GRUETZMANN_PANCREATIC_CANCER_UP View Gene Set 2.004e-13 345 5.51e-12 87 Genes up-regulated in pancreatic ductal adenocarcinoma (PDAC) identified in a meta analysis across four independent studies. www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE View Gene Set 2.132e-13 315 5.796e-12 88 Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells. www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP View Gene Set 2.31e-13 135 6.208e-12 89 Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360]. www.broad.mit.e...
Broad YU_MYC_TARGETS_UP View Gene Set 3.702e-13 37 9.838e-12 90 Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609]. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 3.778e-13 171 9.932e-12 91 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 4.761e-13 758 1.238e-11 92 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 5.425e-13 283 1.395e-11 93 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 7.07e-13 517 1.799e-11 94 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 8.124e-13 92 2.045e-11 95 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 8.686e-13 158 2.164e-11 96 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad BASSO_B_LYMPHOCYTE_NETWORK View Gene Set 8.882e-13 136 2.19e-11 97 Genes which comprise the top 1% of highly interconnected genes (major hubs) that account for most of gene interactions in the reconstructed regulatory networks from expression profiles in B lymphocytes. www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP View Gene Set 9.349e-13 195 2.282e-11 98 Genes up-regulated in monocytes by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 1.111e-12 436 2.683e-11 99 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN View Gene Set 1.596e-12 437 3.818e-11 100 Genes down-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 2.233e-12 367 5.288e-11 101 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 2.321e-12 508 5.393e-11 102 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 2.322e-12 420 5.393e-11 102 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 2.976e-12 704 6.844e-11 104 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 6.813e-12 205 1.552e-10 105 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 1.224e-11 433 2.761e-10 106 Mitochondrial genes www.broad.mit.e...
Broad OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 1.493e-11 114 3.337e-10 107 Genes up-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN View Gene Set 1.729e-11 76 3.76e-10 108 Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 1.698e-11 86 3.76e-10 108 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1 View Gene Set 1.728e-11 491 3.76e-10 108 The 'group 1 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP View Gene Set 1.944e-11 192 4.189e-10 111 Genes enriched in embryonic neural and hematopoietic stem cells. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 2e-11 869 4.272e-10 112 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 2.173e-11 155 4.599e-10 113 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 2.655e-11 165 5.57e-10 114 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 2.813e-11 184 5.85e-10 115 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 3.235e-11 509 6.672e-10 116 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 3.668e-11 471 7.499e-10 117 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN View Gene Set 4.395e-11 53 8.909e-10 118 Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019]. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_DN View Gene Set 4.435e-11 329 8.915e-10 119 Genes down-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_DN View Gene Set 5.35e-11 607 1.066e-09 120 Transcripts depleted from pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER View Gene Set 5.459e-11 60 1.079e-09 121 Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 6.485e-11 208 1.272e-09 122 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 7.395e-11 418 1.438e-09 123 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN View Gene Set 9.591e-11 66 1.85e-09 124 Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN View Gene Set 1.403e-10 60 2.685e-09 125 Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701]. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 1.482e-10 53 2.813e-09 126 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 1.722e-10 406 3.242e-09 127 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 1.896e-10 368 3.542e-09 128 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 2.22e-10 329 4.117e-09 129 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_UP View Gene Set 2.382e-10 629 4.382e-09 130 Genes up-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP View Gene Set 3.224e-10 539 5.887e-09 131 Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 3.265e-10 92 5.917e-09 132 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad ALONSO_METASTASIS_UP View Gene Set 3.313e-10 152 5.959e-09 133 Up-regulated genes in melanoma tumous that developed metastatic disease compared to primary melanoma that did not. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 3.565e-10 269 6.364e-09 134 Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_DN View Gene Set 4.148e-10 200 7.35e-09 135 Genes down-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP View Gene Set 4.436e-10 87 7.802e-09 136 Top 100 probe sets contrubuting to the positive side of the 2nd principal component; associated with adipocytic differentiation. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_UP View Gene Set 4.657e-10 283 8.104e-09 137 Genes up-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 4.675e-10 301 8.104e-09 137 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_CHEMOTAXIS_DN View Gene Set 6.162e-10 430 1.06e-08 139 Transcripts depleted in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988]. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 6.707e-10 124 1.146e-08 140 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad WINTER_HYPOXIA_METAGENE View Gene Set 9.824e-10 216 1.667e-08 141 Genes regulated by hypoxia based on literature searches. www.broad.mit.e...
Broad BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_UP View Gene Set 1.109e-09 116 1.869e-08 142 Up-regulated genes in MDA-MB-435 cells (breast cancer) undergoing G2/M arrest after treatment with 2-methoxyestradiol (2ME2)[PubChem=1573]. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_DN View Gene Set 1.125e-09 208 1.882e-08 143 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 1.186e-09 583 1.97e-08 144 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_UP View Gene Set 1.291e-09 240 2.13e-08 145 Selected genes up-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 1.368e-09 783 2.227e-08 146 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 1.36e-09 187 2.227e-08 146 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE View Gene Set 1.702e-09 36 2.75e-08 148 Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 2.304e-09 154 3.698e-08 149 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP View Gene Set 3.222e-09 80 5.138e-08 150 Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 3.367e-09 359 5.333e-08 151 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN View Gene Set 3.659e-09 22 5.758e-08 152 Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161]. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 3.838e-09 436 6e-08 153 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 3.995e-09 212 6.205e-08 154 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_6HR_DN View Gene Set 4.808e-09 160 7.42e-08 155 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 6h. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN View Gene Set 4.957e-09 104 7.601e-08 156 Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years). www.broad.mit.e...
Broad FARMER_BREAST_CANCER_BASAL_VS_LULMINAL View Gene Set 5.156e-09 317 7.856e-08 157 Genes which best discriminated between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: basal (ESR1- AR-) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad KAN_RESPONSE_TO_ARSENIC_TRIOXIDE View Gene Set 6.267e-09 117 9.488e-08 158 Genes changed in U373-MG cells (malignant glioma) upon treatment with arsenic trioxide [PubChem=14888] a chemical that can cause autophagic cell death. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_SCC_UP View Gene Set 7.335e-09 80 1.103e-07 159 Genes up-regulated in SCC12B2 cells (squamous cell carcinoma) by UV-B irradiation. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2 View Gene Set 7.563e-09 33 1.131e-07 160 Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples. www.broad.mit.e...
Broad LAIHO_COLORECTAL_CANCER_SERRATED_UP View Gene Set 7.774e-09 108 1.155e-07 161 Genes up-regulated in serrated vs conventional colorectal carcinoma (CRC) samples. www.broad.mit.e...
Broad CHANG_CYCLING_GENES View Gene Set 8.885e-09 49 1.312e-07 162 Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature. www.broad.mit.e...
Broad OSMAN_BLADDER_CANCER_UP View Gene Set 9.324e-09 387 1.368e-07 163 Genes up-regulated in blood samples from bladder cancer patients. www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP View Gene Set 1.008e-08 52 1.47e-07 164 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage. www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN View Gene Set 1.051e-08 131 1.523e-07 165 Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN View Gene Set 1.279e-08 43 1.843e-07 166 Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757]. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 1.368e-08 532 1.959e-07 167 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN View Gene Set 1.436e-08 140 2.045e-07 168 Genes down-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13 View Gene Set 2.376e-08 158 3.364e-07 169 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 13. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 2.418e-08 317 3.403e-07 170 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_480_HELA View Gene Set 2.489e-08 159 3.461e-07 171 Genes whose expression peaked at 480 min after stimulation of HeLa cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14 View Gene Set 2.485e-08 131 3.461e-07 171 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14. www.broad.mit.e...
Broad WU_APOPTOSIS_BY_CDKN1A_VIA_TP53 View Gene Set 2.975e-08 36 4.114e-07 173 Genes downstream of both CDKN1A and TP53 [Gene ID=1026 7157] in 2774qw1 cells (ovarian cancer). www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C6 View Gene Set 3.188e-08 39 4.382e-07 174 Cluster 6: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 3.53e-08 504 4.825e-07 175 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP View Gene Set 3.553e-08 53 4.829e-07 176 The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele. www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_DN View Gene Set 3.647e-08 168 4.929e-07 177 Genes down-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN View Gene Set 4.232e-08 52 5.687e-07 178 Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage. www.broad.mit.e...
Broad LIAO_METASTASIS View Gene Set 4.618e-08 513 6.172e-07 179 Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC. www.broad.mit.e...
Broad DITTMER_PTHLH_TARGETS_UP View Gene Set 5.002e-08 108 6.646e-07 180 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of PTHLH [Gene ID=5744] by RNAi. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES View Gene Set 5.236e-08 128 6.92e-07 181 Genes involved in DNA replication compiled manually by the authors. www.broad.mit.e...
Broad LIU_CMYB_TARGETS_UP View Gene Set 6.105e-08 158 8.024e-07 182 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP View Gene Set 6.164e-08 388 8.058e-07 183 Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_UP View Gene Set 6.352e-08 328 8.258e-07 184 Genes up-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP View Gene Set 6.568e-08 190 8.492e-07 185 Genes up-regulated in medullary breast cancer (MBC) relative to ductal breast cancer (DBD). www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN View Gene Set 8.941e-08 317 1.15e-06 186 The postradiation tumor escape signature: genes down-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad PROVENZANI_METASTASIS_UP View Gene Set 9.545e-08 188 1.221e-06 187 Genes up-regulated in polysomal and total RNA samples from SW480 cells (primary colorectal carcinoma CRC) compared to the SW620 cells (lymph node metastasis from the same individual). www.broad.mit.e...
Broad SANA_RESPONSE_TO_IFNG_DN View Gene Set 1.024e-07 79 1.303e-06 188 Genes down-regulated in five primary endothelial cell types (lung aortic iliac dermal and colon) by IFNG [Gene ID=3458]. www.broad.mit.e...
Broad TONG_INTERACT_WITH_PTTG1 View Gene Set 1.105e-07 53 1.398e-06 189 Proteins that interact with PTTG1 [Gene ID=9232] based on protein array. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 1.428e-07 399 1.798e-06 190 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 1.684e-07 127 2.109e-06 191 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad OSADA_ASCL1_TARGETS_DN View Gene Set 1.715e-07 24 2.137e-06 192 Genes down-regulated in A549 cells (lung cancer) upon expression of ASCL1 [Gene ID=429] off a viral vector. www.broad.mit.e...
Broad OUELLET_CULTURED_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 1.891e-07 66 2.343e-06 193 Genes up-regulated in pirmary cultures of epithelial ovarian cancer (EOC): invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION View Gene Set 1.93e-07 154 2.38e-06 194 Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population. www.broad.mit.e...
Broad PENG_GLUTAMINE_DEPRIVATION_DN View Gene Set 1.949e-07 84 2.391e-06 195 Genes down-regulated in BJAB cells (B-lymphoma) after glutamine [PubChem=738] deprivation. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP View Gene Set 2.141e-07 178 2.613e-06 196 Genes up-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP View Gene Set 2.167e-07 45 2.631e-06 197 Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone. www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN View Gene Set 2.308e-07 49 2.789e-06 198 Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C1 View Gene Set 2.391e-07 68 2.874e-06 199 Cluster 1: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN View Gene Set 2.414e-07 51 2.887e-06 200 Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC). www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_CELLCYCLE_PATHWAY View Gene Set 4.097e-05 23 0.005572 1 Cyclins and Cell Cycle Regulation www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY View Gene Set 5.135e-05 10 0.005572 1 Role of Ran in mitotic spindle regulation www.broad.mit.e...
Broad BIOCARTA_G1_PATHWAY View Gene Set 0.0005817 28 0.03962 3 Cell Cycle: G1/S Check Point www.broad.mit.e...
Broad BIOCARTA_PROTEASOME_PATHWAY View Gene Set 0.0007303 19 0.03962 3 Proteasome Complex www.broad.mit.e...
Broad BIOCARTA_P27_PATHWAY View Gene Set 0.001001 13 0.04273 5 Regulation of p27 Phosphorylation during Cell Cycle Progression www.broad.mit.e...
Broad BIOCARTA_ATRBRCA_PATHWAY View Gene Set 0.001181 21 0.04273 5 Role of BRCA1 BRCA2 and ATR in Cancer Susceptibility www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_CELL_CYCLE View Gene Set 1.675e-10 128 3.115e-08 1 Cell cycle www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 1.307e-07 98 1.216e-05 2 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_RIBOSOME View Gene Set 1.089e-06 88 6.753e-05 3 Ribosome www.broad.mit.e...
Broad KEGG_SPLICEOSOME View Gene Set 9.227e-06 118 0.0004291 4 Spliceosome www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR View Gene Set 1.178e-05 35 0.0004381 5 Base excision repair www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 0.0001638 36 0.005078 6 DNA replication www.broad.mit.e...
Broad KEGG_PURINE_METABOLISM View Gene Set 0.0004957 157 0.01024 7 Purine metabolism www.broad.mit.e...
Broad KEGG_RNA_POLYMERASE View Gene Set 0.0004703 29 0.01024 7 RNA polymerase www.broad.mit.e...
Broad KEGG_OOCYTE_MEIOSIS View Gene Set 0.0003939 114 0.01024 7 Oocyte meiosis www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 0.0007133 44 0.01206 10 Nucleotide excision repair www.broad.mit.e...
Broad KEGG_BLADDER_CANCER View Gene Set 0.0007016 42 0.01206 10 Bladder cancer www.broad.mit.e...
Broad KEGG_P53_SIGNALING_PATHWAY View Gene Set 0.0007878 69 0.01221 12 p53 signaling pathway www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 0.001024 138 0.01465 13 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_PROTEASOME View Gene Set 0.001664 48 0.02211 14 Proteasome www.broad.mit.e...
Broad KEGG_PROTEIN_EXPORT View Gene Set 0.001973 24 0.02313 15 Protein export www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION View Gene Set 0.001989 28 0.02313 15 Homologous recombination www.broad.mit.e...
Broad KEGG_SMALL_CELL_LUNG_CANCER View Gene Set 0.002471 84 0.02703 17 Small cell lung cancer www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS View Gene Set 0.003812 41 0.03939 18 Aminoacyl-tRNA biosynthesis www.broad.mit.e...
Broad KEGG_PYRUVATE_METABOLISM View Gene Set 0.004188 40 0.04029 19 Pyruvate metabolism www.broad.mit.e...
Broad KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION View Gene Set 0.004333 86 0.04029 19 Progesterone-mediated oocyte maturation www.broad.mit.e...
Broad KEGG_OXIDATIVE_PHOSPHORYLATION View Gene Set 0.004917 135 0.04157 21 Oxidative phosphorylation www.broad.mit.e...
Broad KEGG_GLUTATHIONE_METABOLISM View Gene Set 0.004694 50 0.04157 21 Glutathione metabolism www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR View Gene Set 0.006037 23 0.04882 23 Mismatch repair www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 1.415e-31 306 6.084e-29 1 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 8.463e-18 157 1.82e-15 2 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 5.163e-13 92 7.4e-11 3 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 7.26e-13 415 7.804e-11 4 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 1.727e-11 102 1.238e-09 5 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE View Gene Set 1.549e-11 137 1.238e-09 5 Genes involved in Influenza Life Cycle www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 1.997e-10 103 1.227e-08 7 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 3.64e-10 110 1.957e-08 8 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 5.062e-10 84 2.418e-08 9 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 5.86e-10 120 2.52e-08 10 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION View Gene Set 7.433e-10 100 2.905e-08 11 Genes involved in Influenza Viral RNA Transcription and Replication www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 1.352e-08 89 4.846e-07 12 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 1.856e-08 128 6.141e-07 13 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT View Gene Set 2.132e-08 106 6.42e-07 14 Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit www.broad.mit.e...
Broad REACTOME_PEPTIDE_CHAIN_ELONGATION View Gene Set 2.239e-08 84 6.42e-07 14 Genes involved in Peptide chain elongation www.broad.mit.e...
Broad REACTOME_VIRAL_MRNA_TRANSLATION View Gene Set 3.004e-08 84 8.074e-07 16 Genes involved in Viral mRNA Translation www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 3.874e-08 183 9.798e-07 17 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS View Gene Set 4.924e-08 215 1.176e-06 18 Genes involved in Metabolism of proteins www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS View Gene Set 7.644e-08 95 1.681e-06 19 Genes involved in Formation of a pool of free 40S subunits www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE View Gene Set 7.819e-08 71 1.681e-06 19 Genes involved in Regulation of APC/C activators between G1/S and early anaphase www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 1.349e-07 124 2.762e-06 21 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION View Gene Set 1.59e-07 72 3.108e-06 22 Genes involved in Centrosome maturation www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 1.752e-07 76 3.275e-06 23 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A View Gene Set 2.455e-07 63 4.399e-06 24 Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 2.666e-07 102 4.586e-06 25 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 2.875e-07 97 4.755e-06 26 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_INSULIN_SYNTHESIS_AND_SECRETION View Gene Set 5.813e-07 129 9.257e-06 27 Genes involved in Insulin Synthesis and Secretion www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 9.768e-07 142 1.5e-05 28 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES View Gene Set 1.417e-06 62 2.102e-05 29 Genes involved in Loss of Nlp from mitotic centrosomes www.broad.mit.e...
Broad REACTOME_DIABETES_PATHWAYS View Gene Set 1.615e-06 383 2.315e-05 30 Genes involved in Diabetes pathways www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 1.796e-06 63 2.491e-05 31 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ View Gene Set 2.216e-06 58 2.978e-05 32 Genes involved in Cyclin E associated events during G1/S transition www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 2.37e-06 33 3.088e-05 33 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 2.904e-06 120 3.673e-05 34 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GENE_EXPRESSION_IN_BETA_CELLS View Gene Set 3.301e-06 101 4.055e-05 35 Genes involved in Regulation of gene expression in beta cells www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21 View Gene Set 5.517e-06 52 6.589e-05 36 Genes involved in SCF(Skp2)-mediated degradation of p2721 www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 1.123e-05 61 0.0001305 37 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC View Gene Set 1.803e-05 57 0.000204 38 Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION View Gene Set 1.874e-05 15 0.0002067 39 Genes involved in Cyclin A1 associated events during G2/M transition www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 3.721e-05 95 0.0004 40 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 4.61e-05 49 0.0004834 41 Genes involved in Nucleotide Excision Repair www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S View Gene Set 5.381e-05 22 0.0005509 42 Genes involved in E2F transcriptional targets at G1/S www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 5.598e-05 103 0.0005598 43 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX View Gene Set 6.589e-05 52 0.0006439 44 Genes involved in CDT1 association with the CDC6:ORC:origin complex www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 7.426e-05 50 0.0007096 45 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 8.007e-05 43 0.0007325 46 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER View Gene Set 7.999e-05 44 0.0007325 46 Genes involved in Transcription-coupled NER (TC-NER) www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 8.293e-05 37 0.0007429 48 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_REGULATION_OF_BETA_CELL_DEVELOPMENT View Gene Set 0.0001274 114 0.001118 49 Genes involved in Regulation of beta-cell development www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 View Gene Set 0.0001403 48 0.001207 50 Genes involved in SCF-beta-TrCP mediated degradation of Emi1 www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 0.0002529 90 0.002132 51 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 0.0003062 42 0.002532 52 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 0.0003466 30 0.00271 53 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 0.0003438 28 0.00271 53 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE View Gene Set 0.0003398 47 0.00271 53 Genes involved in Regulation of ornithine decarboxylase (ODC) www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G View Gene Set 0.0003867 47 0.00297 56 Genes involved in Vif-mediated degradation of APOBEC3G www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION View Gene Set 0.0004844 83 0.003654 57 Genes involved in RNA Polymerase II Transcription www.broad.mit.e...
Broad REACTOME_FORMATION_OF_ATP_BY_CHEMIOSMOTIC_COUPLING View Gene Set 0.0005007 15 0.003712 58 Genes involved in Formation of ATP by chemiosmotic coupling www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE View Gene Set 0.0005899 43 0.004299 59 Genes involved in p53-Independent DNA Damage Response www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX View Gene Set 0.0006197 18 0.004441 60 Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex www.broad.mit.e...
Broad REACTOME_TRANSLATION_INITIATION_COMPLEX_FORMATION View Gene Set 0.0006352 56 0.004478 61 Genes involved in Translation initiation complex formation www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX View Gene Set 0.000672 32 0.004643 62 Genes involved in Formation of the Early Elongation Complex www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT View Gene Set 0.0006803 58 0.004643 62 Genes involved in Signaling by Wnt www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 0.0009099 30 0.006113 64 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING View Gene Set 0.000935 25 0.006185 65 Genes involved in mRNA 3-end processing www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX View Gene Set 0.001002 49 0.006429 66 Genes involved in Formation of the ternary complex and subsequently the 43S complex www.broad.mit.e...
Broad REACTOME_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE View Gene Set 0.0009916 26 0.006429 66 Genes involved in RNA Pol II CTD phosphorylation and interaction with CE www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53 View Gene Set 0.001047 46 0.006621 68 Genes involved in Stabilization of p53 www.broad.mit.e...
Broad REACTOME_G1_PHASE View Gene Set 0.001065 16 0.006638 69 Genes involved in G1 Phase www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 0.001396 31 0.008515 70 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 0.001406 32 0.008515 70 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER View Gene Set 0.001586 33 0.009474 72 Genes involved in Global Genomic NER (GG-NER) www.broad.mit.e...
Broad REACTOME_CONVERSION_FROM_APC_CDC20_TO_APC_CDH1_IN_LATE_ANAPHASE View Gene Set 0.001774 17 0.01039 73 Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase www.broad.mit.e...
Broad REACTOME_FURTHER_PLATELET_RELEASATE View Gene Set 0.001789 24 0.01039 73 Genes involved in Further platelet releasate www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 0.001904 188 0.01091 75 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY View Gene Set 0.001994 38 0.01128 76 Genes involved in mRNA Splicing - Minor Pathway www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_TC_NER View Gene Set 0.002118 28 0.01139 77 Genes involved in Dual incision reaction in TC-NER www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_ELONGATION View Gene Set 0.002086 41 0.01139 77 Genes involved in HIV-1 Transcription Elongation www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES View Gene Set 0.002113 119 0.01139 77 Genes involved in Metabolism of carbohydrates www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC View Gene Set 0.00205 17 0.01139 77 Genes involved in Phosphorylation of the APC/C www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_AMINO_ACIDS View Gene Set 0.002181 162 0.01158 81 Genes involved in Metabolism of amino acids www.broad.mit.e...
Broad REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B View Gene Set 0.002219 18 0.01164 82 Genes involved in APC/C:Cdc20 mediated degradation of Cyclin B www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 0.002247 29 0.01164 83 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_MRNA_PROCESSING View Gene Set 0.002445 32 0.01252 84 Genes involved in mRNA Processing www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 0.002818 31 0.01426 85 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_APOPTOSIS View Gene Set 0.003014 129 0.0149 86 Genes involved in Apoptosis www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 0.00301 31 0.0149 86 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM View Gene Set 0.003465 22 0.01693 88 Genes involved in Pyrimidine metabolism www.broad.mit.e...
Broad REACTOME_POST_CHAPERONIN_TUBULIN_FOLDING_PATHWAY View Gene Set 0.003636 19 0.01757 89 Genes involved in Post-chaperonin tubulin folding pathway www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_EGFR View Gene Set 0.004328 48 0.02068 90 Genes involved in Signaling by EGFR www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 0.004756 71 0.02247 91 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION View Gene Set 0.004887 20 0.02281 92 Genes involved in Mitochondrial tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 0.004934 29 0.02281 92 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT View Gene Set 0.005509 23 0.0252 94 Genes involved in Abortive elongation of HIV-1 transcript in the absence of Tat www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_BH3_ONLY_PROTEINS View Gene Set 0.006011 16 0.02721 95 Genes involved in Activation of BH3-only proteins www.broad.mit.e...
Broad REACTOME_CELLEXTRACELLULAR_MATRIX_INTERACTIONS View Gene Set 0.00704 16 0.03153 96 Genes involved in Cell-extracellular matrix interactions www.broad.mit.e...
Broad REACTOME_BASE_EXCISION_REPAIR View Gene Set 0.007776 18 0.03447 97 Genes involved in Base Excision Repair www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 0.007869 77 0.03453 98 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS View Gene Set 0.007975 20 0.03464 99 Genes involved in Lagging Strand Synthesis www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_TERMINATION View Gene Set 0.008188 21 0.03521 100 Genes involved in RNA PolymeraseTranscription Termination www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.00898 21 0.03823 101 Genes involved in Double-Strand Break Repair www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION View Gene Set 0.009373 40 0.03951 102 Genes involved in tRNA Aminoacylation www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM View Gene Set 0.009689 18 0.04045 103 Genes involved in Pyruvate metabolism www.broad.mit.e...
Broad REACTOME_SHC_MEDIATED_SIGNALLING View Gene Set 0.01036 12 0.04286 104 Genes involved in SHC-mediated signalling www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME View Gene Set 0.01052 59 0.0431 105 Genes involved in Transcription of the HIV genome www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR View Gene Set 0.01099 15 0.04415 106 Genes involved in Homologous Recombination Repair www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_FATTY_ACID_BETA_OXIDATION View Gene Set 0.01094 10 0.04415 106 Genes involved in Mitochondrial Fatty Acid Beta-Oxidation www.broad.mit.e...
Broad REACTOME_BASIGIN_INTERACTIONS View Gene Set 0.01128 25 0.04492 108 Genes involved in Basigin interactions www.broad.mit.e...
Broad REACTOME_FANCONI_ANEMIA_PATHWAY View Gene Set 0.01157 15 0.04557 109 Genes involved in Fanconi Anemia pathway www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS View Gene Set 0.01166 18 0.04557 109 Genes involved in MicroRNA biogenesis www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE View Gene Set 0.01195 20 0.04629 111 Genes involved in RNA Polymerase I Promoter Escape www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_CD3_AND_TCR_ZETA_CHAINS View Gene Set 0.01223 26 0.04695 112 Genes involved in Phosphorylation of CD3 and TCR zeta chains www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GTGCCTT MIR-506 View Gene Set 5.262e-06 605 0.001163 1 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad CTTTGTA MIR-524 View Gene Set 7.549e-05 375 0.008342 2 Targets of MicroRNA CTTTGTA MIR-524 www.broad.mit.e... MIR-524...
Broad GTCTTCC MIR-7 View Gene Set 0.0001522 132 0.01122 3 Targets of MicroRNA GTCTTCC MIR-7 www.broad.mit.e... MIR-7...
Broad CTAGGAA MIR-384 View Gene Set 0.0003927 53 0.0217 4 Targets of MicroRNA CTAGGAA MIR-384 www.broad.mit.e... MIR-384...
Broad TGCTGCT MIR-15A MIR-16 MIR-15B MIR-195 MIR-424 MIR-497 View Gene Set 0.001668 512 0.04917 5 Targets of MicroRNA TGCTGCT MIR-15A MIR-16 MIR-15B MIR-195 MIR-424 MIR-497 www.broad.mit.e... MIR-15A... MIR-16... MIR-15B... MIR-195... MIR-424... MIR-497...
Broad CAGTATT MIR-200B MIR-200C MIR-429 View Gene Set 0.001417 386 0.04917 5 Targets of MicroRNA CAGTATT MIR-200B MIR-200C MIR-429 www.broad.mit.e... MIR-200B... MIR-200C... MIR-429...
Broad GGGACCA MIR-133A MIR-133B View Gene Set 0.00178 173 0.04917 5 Targets of MicroRNA GGGACCA MIR-133A MIR-133B www.broad.mit.e... MIR-133A... MIR-133B...
Broad ATGAAGG MIR-205 View Gene Set 0.001449 128 0.04917 5 Targets of MicroRNA ATGAAGG MIR-205 www.broad.mit.e... MIR-205...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SCGGAAGY_V$ELK1_02 View Gene Set 6.502e-15 784 3.999e-12 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6 View Gene Set 6.344e-14 2120 1.951e-11 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 1.944e-08 580 3.985e-06 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad CACGTG_V$MYC_Q2 View Gene Set 3.051e-07 734 4.69e-05 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B View Gene Set 5.793e-07 512 7.125e-05 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$ELK1_02 View Gene Set 6.024e-06 170 0.0006174 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNCCGGAARTNN which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad V$NRF2_01 View Gene Set 8.343e-06 166 0.000733 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif ACCGGAAGNG which matches annotation for GABPB1: GA binding protein transcription factor beta subunit 1. www.broad.mit.e...
Broad V$USF_01 View Gene Set 4.427e-05 186 0.003403 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SREBP1_01 View Gene Set 5.776e-05 133 0.003947 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad V$GABP_B View Gene Set 0.0001073 162 0.006596 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$CREB_02 View Gene Set 0.0001835 185 0.01026 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGNTGACGTNN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.0002044 289 0.01047 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad ACTAYRNNNCCCR_UNKNOWN View Gene Set 0.0003921 293 0.01723 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACTAYRNNNCCCR. Motif does not match any known transcription factor www.broad.mit.e...
Broad TMTCGCGANR_UNKNOWN View Gene Set 0.0003865 100 0.01723 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TMTCGCGANR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$USF2_Q6 View Gene Set 0.0005285 182 0.02151 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CASGYG. Motif does not match any known transcription factor www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN View Gene Set 0.0005596 130 0.02151 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CETS1P54_01 View Gene Set 0.0007137 183 0.02582 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCMGGAWGYN which matches annotation for ETS1: v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) www.broad.mit.e...
Broad GGAANCGGAANY_UNKNOWN View Gene Set 0.0008555 79 0.02769 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGAANCGGAANY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q2 View Gene Set 0.0008526 120 0.02769 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$NFMUE1_Q6 View Gene Set 0.001085 175 0.03337 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGCNNMSMYNTTG_UNKNOWN View Gene Set 0.001337 56 0.03738 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNNMSMYNTTG. Motif does not match any known transcription factor www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01 View Gene Set 0.001289 830 0.03738 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$YY1_Q6 View Gene Set 0.001411 166 0.03773 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$NFY_Q6_01 View Gene Set 0.001906 185 0.04884 24 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNNRRCCAATSR. Motif does not match any known transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MORF_BUB3 View Gene Set 8.627e-26 256 3.684e-23 1 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 6.199e-24 316 1.324e-21 2 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 2.511e-21 256 3.573e-19 3 Neighborhood of CSNK2B www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 1.035e-20 52 1.105e-18 4 Neighborhood of CDC20 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 3.142e-20 256 2.246e-18 5 Neighborhood of HDAC2 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 3.157e-20 56 2.246e-18 5 Neighborhood of CENPF www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 7.693e-20 247 3.882e-18 7 Neighborhood of SOD1 www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 8.182e-20 220 3.882e-18 7 Neighborhood of EIF3S2 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 7.527e-20 53 3.882e-18 7 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 7.789e-19 82 3.326e-17 10 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 5.463e-18 62 2.121e-16 11 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 6.014e-18 276 2.14e-16 12 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 1.414e-17 155 4.646e-16 13 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 2.276e-16 75 6.943e-15 14 Neighborhood of SMC4L1 www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 2.813e-16 62 8.009e-15 15 Neighborhood of CCNA2 www.broad.mit.e...
Broad MORF_RAN View Gene Set 6.352e-16 242 1.695e-14 16 Neighborhood of RAN www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 2.203e-15 43 5.533e-14 17 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 3.278e-15 56 7.775e-14 18 Neighborhood of CDC2 www.broad.mit.e...
Broad MORF_DEK View Gene Set 3.553e-15 229 7.984e-14 19 Neighborhood of DEK www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 1.274e-14 137 2.591e-13 20 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 1.264e-14 174 2.591e-13 20 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_EI24 View Gene Set 2.361e-14 136 4.582e-13 22 Neighborhood of EI24 www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 3.487e-14 157 6.473e-13 23 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 5.095e-14 150 8.794e-13 24 Neighborhood of PPP1CC www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 5.149e-14 37 8.794e-13 24 Neighborhood of CENPE www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 5.91e-14 175 9.706e-13 26 Neighborhood of SKP1A www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 8.134e-14 222 1.286e-12 27 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 3.048e-13 162 4.648e-12 28 Neighborhood of PSMC1 www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 3.411e-13 145 5.022e-12 29 Neighborhood of PPP1CA www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 4.024e-13 46 5.728e-12 30 Neighborhood of BUB1B www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 4.798e-13 102 6.608e-12 31 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_NPM1 View Gene Set 7.745e-13 152 1.033e-11 32 Neighborhood of NPM1 www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 9.196e-13 49 1.19e-11 33 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_FBL View Gene Set 1.213e-12 121 1.523e-11 34 Neighborhood of FBL www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 1.522e-12 197 1.857e-11 35 Neighborhood of AP2M1 www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 1.92e-12 173 2.277e-11 36 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 2.384e-12 208 2.751e-11 37 Neighborhood of UBE2I www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 2.905e-12 35 3.181e-11 38 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 2.888e-12 57 3.181e-11 38 Neighborhood of RFC4 www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 4.877e-12 113 5.207e-11 40 Neighborhood of ACTG1 www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 5.607e-12 50 5.84e-11 41 Neighborhood of MCM4 www.broad.mit.e...
Broad GNF2_FBL View Gene Set 8.545e-12 119 8.688e-11 42 Neighborhood of FBL www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 9.684e-12 210 9.616e-11 43 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 1.267e-11 36 1.229e-10 44 Neighborhood of RRM2 www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 1.845e-11 108 1.751e-10 45 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 2.078e-11 196 1.929e-10 46 Neighborhood of RAC1 www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 2.128e-11 178 1.934e-10 47 Neighborhood of ACP1 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 3.05e-11 30 2.713e-10 48 Neighborhood of SMC2L1 www.broad.mit.e...
Broad MORF_ACTG1 View Gene Set 5.041e-11 134 4.393e-10 49 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_UNG View Gene Set 5.372e-11 65 4.587e-10 50 Neighborhood of UNG www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 5.483e-11 159 4.59e-10 51 Neighborhood of RAD23B www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 6.536e-11 90 5.367e-10 52 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_TTK View Gene Set 6.849e-11 34 5.518e-10 53 Neighborhood of TTK www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 1.834e-10 58 1.45e-09 54 Neighborhood of ESPL1 www.broad.mit.e...
Broad GCM_CSNK2B View Gene Set 2.274e-10 88 1.734e-09 55 Neighborhood of CSNK2B www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 2.246e-10 28 1.734e-09 55 Neighborhood of H2AFX www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 3.314e-10 108 2.483e-09 57 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 3.387e-10 79 2.494e-09 58 Neighborhood of PRDX3 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 4.335e-10 26 3.138e-09 59 Neighborhood of MKI67 www.broad.mit.e...
Broad MORF_ERH View Gene Set 4.489e-10 103 3.195e-09 60 Neighborhood of ERH www.broad.mit.e...
Broad MORF_NME2 View Gene Set 4.829e-10 145 3.38e-09 61 Neighborhood of NME2 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 5.987e-10 71 4.123e-09 62 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 6.251e-10 58 4.182e-09 63 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_EIF3S6 View Gene Set 6.268e-10 109 4.182e-09 63 Neighborhood of EIF3S6 www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 6.553e-10 45 4.305e-09 65 Neighborhood of CKS2 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 7.497e-10 49 4.85e-09 66 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 7.766e-10 145 4.95e-09 67 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 1.042e-09 93 6.543e-09 68 Neighborhood of PTPN11 www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 1.561e-09 105 9.659e-09 69 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 1.612e-09 123 9.831e-09 70 Neighborhood of MAP2K2 www.broad.mit.e...
Broad MORF_AATF View Gene Set 1.752e-09 179 1.054e-08 71 Neighborhood of AATF www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 1.886e-09 98 1.118e-08 72 Neighborhood of DAP3 www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 2.833e-09 179 1.657e-08 73 Neighborhood of RAB1A www.broad.mit.e...
Broad GCM_TPT1 View Gene Set 3.856e-09 69 2.195e-08 74 Neighborhood of TPT1 www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 3.805e-09 25 2.195e-08 74 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_EIF4A2 View Gene Set 4.667e-09 120 2.622e-08 76 Neighborhood of EIF4A2 www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 8.568e-09 76 4.752e-08 77 Neighborhood of PSME1 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 9.488e-09 175 5.145e-08 78 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 9.52e-09 38 5.145e-08 78 Neighborhood of RFC3 www.broad.mit.e...
Broad MORF_GMPS View Gene Set 1.376e-08 48 7.343e-08 80 Neighborhood of GMPS www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 1.446e-08 72 7.621e-08 81 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 2.113e-08 170 1.101e-07 82 Neighborhood of RPA2 www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 2.244e-08 36 1.154e-07 83 Neighborhood of CKS1B www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 2.483e-08 57 1.262e-07 84 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 2.669e-08 76 1.341e-07 85 Neighborhood of CCNI www.broad.mit.e...
Broad GNF2_ST13 View Gene Set 3.416e-08 56 1.696e-07 86 Neighborhood of ST13 www.broad.mit.e...
Broad MORF_TPT1 View Gene Set 3.542e-08 100 1.738e-07 87 Neighborhood of TPT1 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 5.995e-08 149 2.909e-07 88 Neighborhood of CTBP1 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 6.198e-08 78 2.974e-07 89 Neighborhood of RAN www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 7.631e-08 29 3.62e-07 90 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 8.025e-08 73 3.766e-07 91 Neighborhood of PA2G4 www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 8.34e-08 85 3.871e-07 92 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 9.56e-08 202 4.39e-07 93 Neighborhood of PRKAG1 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 1.093e-07 45 4.964e-07 94 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 2.317e-07 100 1.037e-06 95 Neighborhood of PSMC2 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 2.331e-07 45 1.037e-06 95 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 2.507e-07 51 1.104e-06 97 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_SART1 View Gene Set 2.596e-07 55 1.131e-06 98 Neighborhood of SART1 www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 2.839e-07 54 1.225e-06 99 Neighborhood of RBBP6 www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 2.87e-07 52 1.225e-06 100 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 3.029e-07 63 1.281e-06 101 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 3.984e-07 79 1.668e-06 102 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 4.072e-07 119 1.688e-06 103 Neighborhood of AP3D1 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 4.118e-07 47 1.691e-06 104 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 4.301e-07 61 1.749e-06 105 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 6.66e-07 41 2.683e-06 106 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 7.334e-07 95 2.927e-06 107 Neighborhood of MTA1 www.broad.mit.e...
Broad MORF_PPP2R4 View Gene Set 1.233e-06 44 4.873e-06 108 Neighborhood of PPP2R4 www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 1.319e-06 52 5.165e-06 109 Neighborhood of KPNB1 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 1.443e-06 59 5.601e-06 110 Neighborhood of CBFB www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 2.802e-06 94 1.078e-05 111 Neighborhood of RAD54L www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 4.802e-06 76 1.831e-05 112 Neighborhood of MBD4 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 5.017e-06 65 1.896e-05 113 Neighborhood of CCNF www.broad.mit.e...
Broad MORF_ATOX1 View Gene Set 5.185e-06 72 1.942e-05 114 Neighborhood of ATOX1 www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 5.454e-06 98 2.025e-05 115 Neighborhood of PAPSS1 www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 5.583e-06 110 2.055e-05 116 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 7.667e-06 52 2.798e-05 117 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_JUND View Gene Set 9.612e-06 63 3.478e-05 118 Neighborhood of JUND www.broad.mit.e...
Broad MORF_PPP2R5E View Gene Set 1.098e-05 76 3.94e-05 119 Neighborhood of PPP2R5E www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 1.141e-05 29 4.061e-05 120 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 1.2e-05 94 4.233e-05 121 Neighborhood of RAF1 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 1.475e-05 120 5.164e-05 122 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 1.691e-05 93 5.871e-05 123 Neighborhood of BECN1 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 2.264e-05 39 7.796e-05 124 Neighborhood of DENR www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 2.537e-05 88 8.666e-05 125 Neighborhood of PPP6C www.broad.mit.e...
Broad GCM_AIP View Gene Set 5.318e-05 36 0.0001802 126 Neighborhood of AIP www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 5.417e-05 220 0.0001821 127 Neighborhood of DDB1 www.broad.mit.e...
Broad MORF_RAB5A View Gene Set 5.863e-05 83 0.0001926 128 Neighborhood of RAB5A www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 5.817e-05 61 0.0001926 128 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_NS View Gene Set 5.842e-05 35 0.0001926 128 Neighborhood of NS www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 7.06e-05 55 0.0002301 131 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 7.835e-05 33 0.0002534 132 Neighborhood of UBE2I www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 9.809e-05 34 0.0003149 133 Neighborhood of RAF1 www.broad.mit.e...
Broad GCM_HDAC1 View Gene Set 0.0001096 30 0.0003493 134 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_PHB View Gene Set 0.0001159 112 0.0003666 135 Neighborhood of PHB www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 0.0001271 22 0.0003992 136 Neighborhood of BUB3 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 0.0001464 33 0.0004564 137 Neighborhood of PPP6C www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 0.0001973 144 0.0006106 138 Neighborhood of MAP4K4 www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 0.0002351 76 0.0007222 139 Neighborhood of EIF4E www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 0.0002539 47 0.0007744 140 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 0.0002673 143 0.0008094 141 Neighborhood of RAB10 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.0002714 99 0.000816 142 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 0.0002755 54 0.0008228 143 Neighborhood of DEAF1 www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 0.0003194 28 0.000947 144 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad GCM_PFN1 View Gene Set 0.0003256 47 0.000959 145 Neighborhood of PFN1 www.broad.mit.e...
Broad MORF_DAP View Gene Set 0.0003337 72 0.0009694 146 Neighborhood of DAP www.broad.mit.e...
Broad GCM_MSN View Gene Set 0.0003324 24 0.0009694 146 Neighborhood of MSN www.broad.mit.e...
Broad GNF2_CDH3 View Gene Set 0.0003475 24 0.001002 148 Neighborhood of CDH3 www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 0.0003783 133 0.001084 149 Neighborhood of PRKAR1A www.broad.mit.e...
Broad GNF2_SERPINB5 View Gene Set 0.0003914 25 0.001114 150 Neighborhood of SERPINB5 www.broad.mit.e...
Broad GCM_CRKL View Gene Set 0.0003946 50 0.001116 151 Neighborhood of CRKL www.broad.mit.e...
Broad GNF2_PTX3 View Gene Set 0.0004062 36 0.001141 152 Neighborhood of PTX3 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 0.0004175 69 0.001158 153 Neighborhood of SP3 www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.0004172 131 0.001158 153 Neighborhood of TPR www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.0004773 33 0.001315 155 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GNF2_HLA-C View Gene Set 0.0005029 44 0.001368 156 Neighborhood of HLA-C www.broad.mit.e...
Broad GNF2_STAT6 View Gene Set 0.0004997 75 0.001368 156 Neighborhood of STAT6 www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 0.0005814 30 0.001571 158 Neighborhood of MSH6 www.broad.mit.e...
Broad MORF_SS18 View Gene Set 0.0006593 55 0.001771 159 Neighborhood of SS18 www.broad.mit.e...
Broad MORF_XPC View Gene Set 0.0006765 55 0.001805 160 Neighborhood of XPC www.broad.mit.e...
Broad GNF2_TPT1 View Gene Set 0.0009513 38 0.002523 161 Neighborhood of TPT1 www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 0.001053 50 0.002775 162 Neighborhood of SNRP70 www.broad.mit.e...
Broad GNF2_CDH11 View Gene Set 0.001223 25 0.003204 163 Neighborhood of CDH11 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.001297 30 0.003376 164 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 0.001409 67 0.003629 165 Neighborhood of CDC16 www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 0.001411 32 0.003629 165 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 0.001485 26 0.003797 167 Neighborhood of MSH2 www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 0.00185 36 0.004681 168 Neighborhood of MLH1 www.broad.mit.e...
Broad GNF2_GLTSCR2 View Gene Set 0.001864 31 0.004681 168 Neighborhood of GLTSCR2 www.broad.mit.e...
Broad GNF2_LYN View Gene Set 0.001854 26 0.004681 168 Neighborhood of LYN www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 0.002099 71 0.005242 171 Neighborhood of BMI1 www.broad.mit.e...
Broad GCM_NUMA1 View Gene Set 0.002255 45 0.005597 172 Neighborhood of NUMA1 www.broad.mit.e...
Broad MORF_PPP5C View Gene Set 0.002425 81 0.005985 173 Neighborhood of PPP5C www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 0.002439 26 0.005985 174 Neighborhood of CBFB www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 0.002503 48 0.006107 175 Neighborhood of BAG5 www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 0.002733 32 0.006632 176 Neighborhood of ELAC2 www.broad.mit.e...
Broad MORF_GPX4 View Gene Set 0.003227 49 0.007741 177 Neighborhood of GPX4 www.broad.mit.e...
Broad MORF_CSNK1D View Gene Set 0.003213 65 0.007741 177 Neighborhood of CSNK1D www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 0.00373 68 0.008897 179 Neighborhood of BMPR2 www.broad.mit.e...
Broad GCM_HBP1 View Gene Set 0.003895 54 0.00924 180 Neighborhood of HBP1 www.broad.mit.e...
Broad GCM_MAP1B View Gene Set 0.004696 55 0.01108 181 Neighborhood of MAP1B www.broad.mit.e...
Broad GNF2_BNIP2 View Gene Set 0.004802 31 0.01121 182 Neighborhood of BNIP2 www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 0.004788 20 0.01121 182 Neighborhood of RPA1 www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.00549 100 0.01274 184 Neighborhood of DFFA www.broad.mit.e...
Broad GNF2_CD48 View Gene Set 0.006257 31 0.01444 185 Neighborhood of CD48 www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.006623 44 0.01513 186 Neighborhood of UBE2A www.broad.mit.e...
Broad GNF2_INPP5D View Gene Set 0.006627 38 0.01513 186 Neighborhood of INPP5D www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 0.006784 98 0.01541 188 Neighborhood of RFC1 www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 0.007118 57 0.01608 189 Neighborhood of TERF1 www.broad.mit.e...
Broad GCM_IL6ST View Gene Set 0.007452 48 0.01675 190 Neighborhood of IL6ST www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.008634 138 0.0193 191 Neighborhood of MYST2 www.broad.mit.e...
Broad GNF2_TYK2 View Gene Set 0.009554 31 0.02125 192 Neighborhood of TYK2 www.broad.mit.e...
Broad GNF2_PTPN6 View Gene Set 0.009785 44 0.02165 193 Neighborhood of PTPN6 www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 0.009918 39 0.02182 194 Neighborhood of SIRT2 www.broad.mit.e...
Broad GCM_MAX View Gene Set 0.009965 28 0.02182 194 Neighborhood of MAX www.broad.mit.e...
Broad GCM_BECN1 View Gene Set 0.01023 59 0.02228 196 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_REV3L View Gene Set 0.01053 52 0.02283 197 Neighborhood of REV3L www.broad.mit.e...
Broad GCM_CHUK View Gene Set 0.01078 61 0.02323 198 Neighborhood of CHUK www.broad.mit.e...
Broad GCM_NF2 View Gene Set 0.01083 235 0.02323 198 Neighborhood of NF2 www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.01133 24 0.02419 200 Neighborhood of SMC1L1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_54 View Gene Set 1.018e-30 242 4.62e-28 1 Genes in module_54 www.broad.mit.e...
Broad module_3 View Gene Set 8.419e-30 374 1.911e-27 2 Genes in module_3 www.broad.mit.e...
Broad module_52 View Gene Set 1.899e-27 415 2.875e-25 3 Genes in module_52 www.broad.mit.e...
Broad module_8 View Gene Set 2.705e-25 403 3.07e-23 4 Genes in module_8 www.broad.mit.e...
Broad module_17 View Gene Set 1.648e-21 351 1.496e-19 5 Genes in module_17 www.broad.mit.e...
Broad module_198 View Gene Set 1.051e-20 288 7.951e-19 6 Genes in module_198 www.broad.mit.e...
Broad module_252 View Gene Set 2.373e-20 224 1.539e-18 7 Genes in module_252 www.broad.mit.e...
Broad module_18 View Gene Set 3.382e-20 434 1.919e-18 8 Genes in module_18 www.broad.mit.e...
Broad module_98 View Gene Set 9.185e-19 375 4.633e-17 9 Genes in module_98 www.broad.mit.e...
Broad module_32 View Gene Set 5.882e-16 227 2.67e-14 10 Genes in module_32 www.broad.mit.e...
Broad module_118 View Gene Set 6.909e-16 393 2.852e-14 11 Genes in module_118 www.broad.mit.e...
Broad module_83 View Gene Set 1.108e-15 296 4.193e-14 12 Genes in module_83 www.broad.mit.e...
Broad module_151 View Gene Set 1.397e-15 297 4.879e-14 13 Genes in module_151 www.broad.mit.e...
Broad module_114 View Gene Set 2.036e-15 314 6.604e-14 14 Genes in module_114 www.broad.mit.e...
Broad module_105 View Gene Set 4.044e-14 192 1.224e-12 15 Genes in module_105 www.broad.mit.e...
Broad module_124 View Gene Set 2.919e-13 92 8.282e-12 16 Genes in module_124 www.broad.mit.e...
Broad module_126 View Gene Set 6.087e-12 173 1.626e-10 17 Genes in module_126 www.broad.mit.e...
Broad module_72 View Gene Set 1.089e-11 293 2.747e-10 18 Genes in module_72 www.broad.mit.e...
Broad module_53 View Gene Set 4.484e-11 389 1.071e-09 19 Genes in module_53 www.broad.mit.e...
Broad module_321 View Gene Set 2.152e-09 107 4.885e-08 20 Genes in module_321 www.broad.mit.e...
Broad module_244 View Gene Set 5.559e-09 182 1.202e-07 21 Genes in module_244 www.broad.mit.e...
Broad module_57 View Gene Set 8.044e-09 54 1.66e-07 22 Genes in module_57 www.broad.mit.e...
Broad module_158 View Gene Set 1.261e-08 41 2.49e-07 23 Genes in module_158 www.broad.mit.e...
Broad module_1 View Gene Set 1.46e-08 355 2.763e-07 24 Genes in module_1 www.broad.mit.e...
Broad module_315 View Gene Set 1.985e-08 15 3.604e-07 25 Genes in module_315 www.broad.mit.e...
Broad module_15 View Gene Set 2.45e-08 347 4.278e-07 26 Genes in module_15 www.broad.mit.e...
Broad module_197 View Gene Set 3.086e-08 170 5.189e-07 27 Genes in module_197 www.broad.mit.e...
Broad module_320 View Gene Set 3.621e-08 19 5.872e-07 28 Genes in module_320 www.broad.mit.e...
Broad module_16 View Gene Set 4.776e-08 495 7.476e-07 29 Genes in module_16 www.broad.mit.e...
Broad module_125 View Gene Set 6.753e-08 42 1.022e-06 30 Genes in module_125 www.broad.mit.e...
Broad module_159 View Gene Set 4.219e-07 81 6.178e-06 31 Genes in module_159 www.broad.mit.e...
Broad module_392 View Gene Set 4.997e-07 18 7.089e-06 32 Genes in module_392 www.broad.mit.e...
Broad module_152 View Gene Set 6.569e-07 121 9.037e-06 33 Genes in module_152 www.broad.mit.e...
Broad module_19 View Gene Set 8.927e-07 306 1.192e-05 34 Genes in module_19 www.broad.mit.e...
Broad module_363 View Gene Set 2.035e-06 48 2.64e-05 35 Genes in module_363 www.broad.mit.e...
Broad module_397 View Gene Set 2.34e-06 114 2.951e-05 36 Genes in module_397 www.broad.mit.e...
Broad module_403 View Gene Set 2.874e-06 44 3.527e-05 37 Genes in module_403 www.broad.mit.e...
Broad module_2 View Gene Set 8.546e-06 373 0.0001021 38 Genes in module_2 www.broad.mit.e...
Broad module_91 View Gene Set 1.287e-05 37 0.0001498 39 Genes in module_91 www.broad.mit.e...
Broad module_183 View Gene Set 1.473e-05 52 0.0001672 40 Genes in module_183 www.broad.mit.e...
Broad module_293 View Gene Set 3.818e-05 12 0.0004228 41 Genes in module_293 www.broad.mit.e...
Broad module_61 View Gene Set 4.095e-05 50 0.0004426 42 Genes in module_61 www.broad.mit.e...
Broad module_223 View Gene Set 4.495e-05 140 0.0004745 43 Genes in module_223 www.broad.mit.e...
Broad module_212 View Gene Set 5.286e-05 316 0.0005353 44 Genes in module_212 www.broad.mit.e...
Broad module_447 View Gene Set 5.306e-05 35 0.0005353 44 Genes in module_447 www.broad.mit.e...
Broad module_182 View Gene Set 6.65e-05 94 0.0006564 46 Genes in module_182 www.broad.mit.e...
Broad module_273 View Gene Set 7.23e-05 50 0.0006983 47 Genes in module_273 www.broad.mit.e...
Broad module_28 View Gene Set 8.257e-05 32 0.000781 48 Genes in module_28 www.broad.mit.e...
Broad module_219 View Gene Set 0.0001036 26 0.0009596 49 Genes in module_219 www.broad.mit.e...
Broad module_5 View Gene Set 0.0001131 420 0.001027 50 Genes in module_5 www.broad.mit.e...
Broad module_525 View Gene Set 0.0001382 61 0.00123 51 Genes in module_525 www.broad.mit.e...
Broad module_261 View Gene Set 0.0001898 91 0.001657 52 Genes in module_261 www.broad.mit.e...
Broad module_337 View Gene Set 0.0002096 59 0.001796 53 Genes in module_337 www.broad.mit.e...
Broad module_6 View Gene Set 0.0002348 403 0.001974 54 Genes in module_6 www.broad.mit.e...
Broad module_168 View Gene Set 0.0002471 22 0.002005 55 Genes in module_168 www.broad.mit.e...
Broad module_451 View Gene Set 0.0002474 29 0.002005 55 Genes in module_451 www.broad.mit.e...
Broad module_222 View Gene Set 0.0003477 22 0.002769 57 Genes in module_222 www.broad.mit.e...
Broad module_308 View Gene Set 0.0003685 66 0.002861 58 Genes in module_308 www.broad.mit.e...
Broad module_358 View Gene Set 0.0003717 72 0.002861 58 Genes in module_358 www.broad.mit.e...
Broad module_323 View Gene Set 0.0003985 54 0.003016 60 Genes in module_323 www.broad.mit.e...
Broad module_87 View Gene Set 0.0004363 44 0.003247 61 Genes in module_87 www.broad.mit.e...
Broad module_414 View Gene Set 0.0004493 17 0.00329 62 Genes in module_414 www.broad.mit.e...
Broad module_97 View Gene Set 0.0004582 91 0.003302 63 Genes in module_97 www.broad.mit.e...
Broad module_143 View Gene Set 0.0004819 14 0.003419 64 Genes in module_143 www.broad.mit.e...
Broad module_509 View Gene Set 0.000498 14 0.003478 65 Genes in module_509 www.broad.mit.e...
Broad module_177 View Gene Set 0.0006971 101 0.004795 66 Genes in module_177 www.broad.mit.e...
Broad module_253 View Gene Set 0.0007657 21 0.005188 67 Genes in module_253 www.broad.mit.e...
Broad module_22 View Gene Set 0.0008307 45 0.005546 68 Genes in module_22 www.broad.mit.e...
Broad module_38 View Gene Set 0.0008458 453 0.005565 69 Genes in module_38 www.broad.mit.e...
Broad module_50 View Gene Set 0.0009202 13 0.005968 70 Genes in module_50 www.broad.mit.e...
Broad module_312 View Gene Set 0.000947 45 0.006055 71 Genes in module_312 www.broad.mit.e...
Broad module_567 View Gene Set 0.0009605 90 0.006056 72 Genes in module_567 www.broad.mit.e...
Broad module_144 View Gene Set 0.001021 8 0.006237 73 Genes in module_144 www.broad.mit.e...
Broad module_235 View Gene Set 0.00103 81 0.006237 73 Genes in module_235 www.broad.mit.e...
Broad module_281 View Gene Set 0.001004 28 0.006237 73 Genes in module_281 www.broad.mit.e...
Broad module_439 View Gene Set 0.001133 20 0.006768 76 Genes in module_439 www.broad.mit.e...
Broad module_491 View Gene Set 0.001251 74 0.007377 77 Genes in module_491 www.broad.mit.e...
Broad module_196 View Gene Set 0.001464 23 0.00852 78 Genes in module_196 www.broad.mit.e...
Broad module_568 View Gene Set 0.001792 70 0.0103 79 Genes in module_568 www.broad.mit.e...
Broad module_62 View Gene Set 0.001925 88 0.01093 80 Genes in module_62 www.broad.mit.e...
Broad module_44 View Gene Set 0.002002 319 0.01122 81 Genes in module_44 www.broad.mit.e...
Broad module_47 View Gene Set 0.00213 216 0.01179 82 Genes in module_47 www.broad.mit.e...
Broad module_390 View Gene Set 0.002343 8 0.01282 83 Genes in module_390 www.broad.mit.e...
Broad module_552 View Gene Set 0.002566 18 0.01387 84 Genes in module_552 www.broad.mit.e...
Broad module_155 View Gene Set 0.003309 25 0.01767 85 Genes in module_155 www.broad.mit.e...
Broad module_272 View Gene Set 0.003399 12 0.01794 86 Genes in module_272 www.broad.mit.e...
Broad module_371 View Gene Set 0.003582 25 0.01869 87 Genes in module_371 www.broad.mit.e...
Broad module_239 View Gene Set 0.003663 112 0.0189 88 Genes in module_239 www.broad.mit.e...
Broad module_78 View Gene Set 0.003841 20 0.01959 89 Genes in module_78 www.broad.mit.e...
Broad module_164 View Gene Set 0.004206 61 0.0211 90 Genes in module_164 www.broad.mit.e...
Broad module_543 View Gene Set 0.004229 17 0.0211 90 Genes in module_543 www.broad.mit.e...
Broad module_245 View Gene Set 0.004311 26 0.02128 92 Genes in module_245 www.broad.mit.e...
Broad module_457 View Gene Set 0.004537 9 0.02215 93 Genes in module_457 www.broad.mit.e...
Broad module_357 View Gene Set 0.005343 78 0.0258 94 Genes in module_357 www.broad.mit.e...
Broad module_119 View Gene Set 0.005563 135 0.02658 95 Genes in module_119 www.broad.mit.e...
Broad module_429 View Gene Set 0.006124 14 0.02866 96 Genes in module_429 www.broad.mit.e...
Broad module_438 View Gene Set 0.006085 66 0.02866 96 Genes in module_438 www.broad.mit.e...
Broad module_29 View Gene Set 0.006264 28 0.02902 98 Genes in module_29 www.broad.mit.e...
Broad module_12 View Gene Set 0.00645 346 0.02958 99 Genes in module_12 www.broad.mit.e...
Broad module_254 View Gene Set 0.006859 58 0.03114 100 Genes in module_254 www.broad.mit.e...
Broad module_149 View Gene Set 0.007331 36 0.03295 101 Genes in module_149 www.broad.mit.e...
Broad module_456 View Gene Set 0.008305 108 0.03697 102 Genes in module_456 www.broad.mit.e...
Broad module_84 View Gene Set 0.008832 526 0.03855 103 Genes in module_84 www.broad.mit.e...
Broad module_127 View Gene Set 0.008755 26 0.03855 103 Genes in module_127 www.broad.mit.e...
Broad module_474 View Gene Set 0.01045 16 0.04517 105 Genes in module_474 www.broad.mit.e...
Broad module_150 View Gene Set 0.01132 15 0.04849 106 Genes in module_150 www.broad.mit.e...
Broad module_412 View Gene Set 0.01175 13 0.0495 107 Genes in module_412 www.broad.mit.e...
Broad module_516 View Gene Set 0.01177 16 0.0495 107 Genes in module_516 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CELL_CYCLE_GO_0007049 View Gene Set 2.573e-17 304 2.122e-14 1 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 7.593e-17 1197 3.132e-14 2 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 1.903e-15 187 5.233e-13 3 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 1.316e-13 167 2.713e-11 4 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 6.616e-13 148 1.092e-10 5 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 1.607e-12 1623 2.21e-10 6 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad M_PHASE View Gene Set 4.747e-12 111 5.595e-10 7 Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division. www.broad.mit.e...
Broad MITOSIS View Gene Set 6.775e-11 81 6.987e-09 8 Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 8.406e-11 253 7.705e-09 9 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 1.294e-10 83 1.067e-08 10 Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 7.275e-10 801 5.457e-08 11 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad REGULATION_OF_CELL_CYCLE View Gene Set 4.22e-09 176 2.902e-07 12 Genes annotated by the GO term GO:0051726. Any process that modulates the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 7.944e-09 458 5.041e-07 13 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 2.527e-08 197 1.489e-06 14 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 5.625e-08 159 3.094e-06 15 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 3.772e-07 101 1.874e-05 16 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 3.861e-07 738 1.874e-05 16 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 6.786e-07 147 3.11e-05 18 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 8.557e-07 625 3.715e-05 19 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 1.119e-06 123 4.617e-05 20 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 1.228e-06 601 4.825e-05 21 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 1.498e-06 623 5.617e-05 22 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad INTERPHASE View Gene Set 2.534e-06 68 9.088e-05 23 Genes annotated by the GO term GO:0051325. Progression through interphase the stage of cell cycle between successive rounds of chromosome segregation. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION View Gene Set 2.672e-06 31 9.184e-05 24 Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 3.014e-06 285 9.946e-05 25 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 7.801e-06 555 0.0002475 26 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 8.188e-06 205 0.0002502 27 Genes annotated by the GO term GO:0045934. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 1.004e-05 779 0.0002959 28 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_MITOSIS View Gene Set 1.092e-05 40 0.0003105 29 Genes annotated by the GO term GO:0007088. Any process that modulates the frequency rate or extent of mitosis. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 1.208e-05 117 0.0003321 30 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 1.861e-05 449 0.0004953 31 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075 View Gene Set 2.257e-05 47 0.0005476 32 Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 2.133e-05 767 0.0005476 32 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_METABOLIC_PROCESS View Gene Set 2.209e-05 255 0.0005476 32 Genes annotated by the GO term GO:0009892. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 2.465e-05 452 0.0005496 35 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 2.361e-05 457 0.0005496 35 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad INTERPHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 2.412e-05 62 0.0005496 35 Genes annotated by the GO term GO:0051329. Progression through interphase the stage of cell cycle between successive rounds of mitosis. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 2.94e-05 252 0.0006383 38 Genes annotated by the GO term GO:0031324. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad GOLGI_VESICLE_TRANSPORT View Gene Set 3.041e-05 47 0.0006433 39 Genes annotated by the GO term GO:0048193. The directed movement of substances into out of or within the Golgi apparatus mediated by vesicles. www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS View Gene Set 4.062e-05 53 0.0008309 40 Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. www.broad.mit.e...
Broad MITOCHONDRION_ORGANIZATION_AND_BIOGENESIS View Gene Set 4.129e-05 47 0.0008309 40 Genes annotated by the GO term GO:0007005. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a mitochondrion; includes mitochondrial morphology and distribution and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 4.463e-05 629 0.0008766 42 Genes annotated by the GO term GO:0048523. Any process that stops prevents or reduces the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad G2_M_TRANSITION_OF_MITOTIC_CELL_CYCLE View Gene Set 4.711e-05 13 0.0009038 43 Genes annotated by the GO term GO:0000086. Progression from G2 phase to M phase of the mitotic cell cycle. www.broad.mit.e...
Broad INTRACELLULAR_TRANSPORT View Gene Set 6.875e-05 271 0.001281 44 Genes annotated by the GO term GO:0046907. The directed movement of substances within a cell. www.broad.mit.e...
Broad REGULATION_OF_PROGRAMMED_CELL_DEATH View Gene Set 6.985e-05 336 0.001281 44 Genes annotated by the GO term GO:0043067. Any process that modulates the frequency rate or extent of programmed cell death cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION View Gene Set 7.83e-05 185 0.001404 46 Genes annotated by the GO term GO:0016481. Any process that stops prevents or reduces the frequency rate or extent of transcription. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 9.219e-05 659 0.001586 47 Genes annotated by the GO term GO:0048519. Any process that stops prevents or reduces the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad REGULATION_OF_APOPTOSIS View Gene Set 9.228e-05 335 0.001586 47 Genes annotated by the GO term GO:0042981. Any process that modulates the occurrence or rate of cell death by apoptosis. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 0.0001771 73 0.002983 49 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 0.0002652 660 0.004376 50 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad PROTEIN_METABOLIC_PROCESS View Gene Set 0.000291 1198 0.004707 51 Genes annotated by the GO term GO:0019538. The chemical reactions and pathways involving a specific protein rather than of proteins in general. Includes protein modification. www.broad.mit.e...
Broad MITOTIC_SISTER_CHROMATID_SEGREGATION View Gene Set 0.00039 16 0.006187 52 Genes annotated by the GO term GO:0000070. The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome composed of two sister chromatids aligns at the cell equator paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets. www.broad.mit.e...
Broad POST_GOLGI_VESICLE_MEDIATED_TRANSPORT View Gene Set 0.0004181 14 0.006288 53 Genes annotated by the GO term GO:0006892. The directed movement of substances from the Golgi to other parts of the cell including organelles and the plasma membrane mediated by small transport vesicles. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 0.0004192 288 0.006288 53 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION View Gene Set 0.0004153 55 0.006288 53 Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. www.broad.mit.e...
Broad G1_S_TRANSITION_OF_MITOTIC_CELL_CYCLE View Gene Set 0.0004281 27 0.006306 56 Genes annotated by the GO term GO:0000082. Progression from G1 phase to S phase of the mitotic cell cycle. www.broad.mit.e...
Broad ESTABLISHMENT_OF_CELLULAR_LOCALIZATION View Gene Set 0.0005183 342 0.007247 57 Genes annotated by the GO term GO:0051649. The directed movement of a substance or cellular entity such as a protein complex or organelle to a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.0005085 22 0.007247 57 Genes annotated by the GO term GO:0006302. The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. www.broad.mit.e...
Broad SISTER_CHROMATID_SEGREGATION View Gene Set 0.0005149 17 0.007247 57 Genes annotated by the GO term GO:0000819. The process by which sister chromatids are organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad RESPONSE_TO_STRESS View Gene Set 0.0005499 495 0.007561 60 Genes annotated by the GO term GO:0006950. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually but not necessarily exogenous (e.g. temperature humidity ionizing radiation). www.broad.mit.e...
Broad REGULATION_OF_TRANSFERASE_ACTIVITY View Gene Set 0.0005744 156 0.007768 61 Genes annotated by the GO term GO:0051338. Any process that modulates the frequency rate or extent of transferase activity the catalysis of the transfer of a group e.g. a methyl group glycosyl group acyl group phosphorus-containing or other groups from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. www.broad.mit.e...
Broad REGULATION_OF_KINASE_ACTIVITY View Gene Set 0.0005996 152 0.007852 62 Genes annotated by the GO term GO:0043549. Any process that modulates the frequency rate or extent of kinase activity the catalysis of the transfer of a phosphate group usually from ATP to a substrate molecule. www.broad.mit.e...
Broad REGULATION_OF_PROTEIN_KINASE_ACTIVITY View Gene Set 0.0005917 150 0.007852 62 Genes annotated by the GO term GO:0045859. Any process that modulates the frequency rate or extent of protein kinase activity. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 0.0006847 271 0.008826 64 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad MITOCHONDRIAL_TRANSPORT View Gene Set 0.001021 20 0.01296 65 Genes annotated by the GO term GO:0006839. Transport of substances into out of or within a mitochondrion. www.broad.mit.e...
Broad REGULATION_OF_DNA_REPLICATION View Gene Set 0.001045 19 0.01306 66 Genes annotated by the GO term GO:0006275. Any process that modulates the frequency rate or extent of DNA replication. www.broad.mit.e...
Broad DNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION View Gene Set 0.00118 34 0.01452 67 Genes annotated by the GO term GO:0042770. A cascade of processes induced by the detection of DNA damage within a cell. www.broad.mit.e...
Broad REGULATION_OF_DEVELOPMENTAL_PROCESS View Gene Set 0.001209 432 0.01466 68 Genes annotated by the GO term GO:0050793. Any process that modulates the frequency rate or extent of development the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). www.broad.mit.e...
Broad REGULATION_OF_CYCLIN_DEPENDENT_PROTEIN_KINASE_ACTIVITY View Gene Set 0.001242 42 0.01486 69 Genes annotated by the GO term GO:0000079. Any process that modulates the frequency rate or extent of CDK activity. www.broad.mit.e...
Broad CELLULAR_COMPONENT_DISASSEMBLY View Gene Set 0.001354 33 0.01596 70 Genes annotated by the GO term GO:0022411. A cellular process that results in the breakdown of a part of the cell. www.broad.mit.e...
Broad COFACTOR_BIOSYNTHETIC_PROCESS View Gene Set 0.001393 21 0.01618 71 Genes annotated by the GO term GO:0051188. The chemical reactions and pathways resulting in the formation of a cofactor a substance that is required for the activity of an enzyme or other protein. www.broad.mit.e...
Broad REGULATION_OF_DNA_METABOLIC_PROCESS View Gene Set 0.001532 44 0.01755 72 Genes annotated by the GO term GO:0051052. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving DNA. www.broad.mit.e...
Broad COENZYME_METABOLIC_PROCESS View Gene Set 0.001781 37 0.01959 73 Genes annotated by the GO term GO:0006732. The chemical reactions and pathways involving coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed. www.broad.mit.e...
Broad CELLULAR_LOCALIZATION View Gene Set 0.001762 360 0.01959 73 Genes annotated by the GO term GO:0051641. The processes by which a substance or cellular entity such as a protein complex or organelle is transported to and/or maintained in a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_III_PROMOTER View Gene Set 0.00177 19 0.01959 73 Genes annotated by the GO term GO:0006383. The synthesis of RNA from a DNA template by RNA polymerase III (Pol III) originating at a Pol III-specific promoter. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOCYTOPLASMIC_TRANSPORT View Gene Set 0.001951 22 0.02117 76 Genes annotated by the GO term GO:0046822. Any process that modulates the frequency rate or extent of the directed movement of substances between the nucleus and the cytoplasm. www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT View Gene Set 0.002143 23 0.02296 77 Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.002393 644 0.02531 78 Genes annotated by the GO term GO:0048522. Any process that activates or increases the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad RIBONUCLEOTIDE_METABOLIC_PROCESS View Gene Set 0.002589 14 0.02704 79 Genes annotated by the GO term GO:0009259. The chemical reactions and pathways involving a ribonucleotide a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. www.broad.mit.e...
Broad PROGRAMMED_CELL_DEATH View Gene Set 0.002634 424 0.02716 80 Genes annotated by the GO term GO:0012501. Cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.002962 83 0.02936 81 Genes annotated by the GO term GO:0000122. Any process that stops prevents or reduces the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_DISASSEMBLY View Gene Set 0.002968 15 0.02936 81 Genes annotated by the GO term GO:0032984. The disaggregation of a macromolecular complex into its constituent components. www.broad.mit.e...
Broad CELL_CYCLE_ARREST_GO_0007050 View Gene Set 0.002989 56 0.02936 81 Genes annotated by the GO term GO:0007050. Any process by which progression through the cell cycle is halted during one of the normal phases (G1 S G2 M). www.broad.mit.e...
Broad CHROMOSOME_CONDENSATION View Gene Set 0.002988 10 0.02936 81 Genes annotated by the GO term GO:0030261. The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division or during apoptosis in eukaryotic cells. www.broad.mit.e...
Broad PURINE_RIBONUCLEOTIDE_METABOLIC_PROCESS View Gene Set 0.003177 9 0.03002 85 Genes annotated by the GO term GO:0009150. The chemical reactions and pathways involving a purine ribonucleotide a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 0.003168 685 0.03002 85 Genes annotated by the GO term GO:0048518. Any process that activates or increases the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad BASE_EXCISION_REPAIR View Gene Set 0.003144 16 0.03002 85 Genes annotated by the GO term GO:0006284. In base excision repair an altered base is removed by a DNA glycosylase enzyme followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. www.broad.mit.e...
Broad APOPTOSIS_GO View Gene Set 0.003202 423 0.03002 85 Genes annotated by the GO term GO:0006915. A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE_CHECKPOINT View Gene Set 0.003497 21 0.03241 89 Genes annotated by the GO term GO:0007093. A signal transduction-based surveillance mechanism that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.003629 117 0.03326 90 Genes annotated by the GO term GO:0051254. Any process that activates or increases the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS View Gene Set 0.003802 1085 0.03447 91 Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_DNA_METABOLIC_PROCESS View Gene Set 0.004089 17 0.03644 92 Genes annotated by the GO term GO:0051053. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving DNA. www.broad.mit.e...
Broad DNA_DAMAGE_CHECKPOINT View Gene Set 0.004108 20 0.03644 92 Genes annotated by the GO term GO:0000077. A signal transduction pathway induced by DNA damage that blocks cell cycle progression (in G1 G2 or metaphase) or slows the rate at which S phase proceeds. www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.004233 14 0.03716 94 Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.004289 115 0.03725 95 Genes annotated by the GO term GO:0045893. Any process that activates or increases the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad TRNA_PROCESSING View Gene Set 0.004848 10 0.04166 96 Genes annotated by the GO term GO:0008033. The process by which a pre-tRNA molecule is converted to a mature tRNA ready for addition of an aminoacyl group. www.broad.mit.e...
Broad CELLULAR_PROTEIN_CATABOLIC_PROCESS View Gene Set 0.005051 58 0.04228 97 Genes annotated by the GO term GO:0044257. The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.005074 34 0.04228 97 Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.005064 10 0.04228 97 Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad REGULATION_OF_INTRACELLULAR_TRANSPORT View Gene Set 0.005223 25 0.04309 100 Genes annotated by the GO term GO:0032386. Any process that modulates the frequency rate or extent of the directed movement of substances within cells. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.005609 27 0.04449 101 Genes annotated by the GO term GO:0051129. Any process that stops prevents or reduces the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.005581 9 0.04449 101 Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_METABOLIC_PROCESS View Gene Set 0.00548 1099 0.04449 101 Genes annotated by the GO term GO:0044260. The chemical reactions and pathways involving macromolecules large molecules including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_PROGRAMMED_CELL_DEATH View Gene Set 0.005547 148 0.04449 101 Genes annotated by the GO term GO:0043069. Any process that stops prevents or reduces the frequency rate or extent of programmed cell death cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_TRANSCRIPTION_DNA_DEPENDENT View Gene Set 0.005802 127 0.04516 105 Genes annotated by the GO term GO:0045892. Any process that stops prevents or reduces the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.005802 127 0.04516 105 Genes annotated by the GO term GO:0051253. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad PROTEIN_FOLDING View Gene Set 0.005944 56 0.04583 107 Genes annotated by the GO term GO:0006457. The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. www.broad.mit.e...
Broad PROTEIN_COMPLEX_ASSEMBLY View Gene Set 0.00606 167 0.0463 108 Genes annotated by the GO term GO:0006461. The aggregation arrangement and bonding together of a set of components to form a protein complex. www.broad.mit.e...
Broad PROTEIN_COMPLEX_DISASSEMBLY View Gene Set 0.006334 14 0.04794 109 Genes annotated by the GO term GO:0043241. The disaggregation of a protein complex into its constituent components. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad ORGANELLE_PART View Gene Set 1.834e-25 1149 2.137e-23 1 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 1.236e-25 1144 2.137e-23 1 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEUS View Gene Set 1.449e-23 1353 1.125e-21 3 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 2.79e-23 2054 1.625e-21 4 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 8.515e-17 543 3.968e-15 5 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 1.744e-14 1350 5.806e-13 6 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 1.708e-14 335 5.806e-13 6 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 1.883e-13 914 5.485e-12 8 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 3.921e-11 613 9.135e-10 9 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 3.921e-11 613 9.135e-10 9 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 1.651e-10 434 3.206e-09 11 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 1.651e-10 434 3.206e-09 11 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 5.322e-10 122 9.539e-09 13 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 5.767e-10 365 9.599e-09 14 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 1.418e-09 799 2.203e-08 15 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad SPINDLE View Gene Set 7.435e-09 37 1.083e-07 16 Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 2.789e-08 129 3.823e-07 17 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 4.028e-08 95 5.214e-07 18 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 3.851e-07 266 4.672e-06 19 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION View Gene Set 4.01e-07 31 4.672e-06 19 Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome. www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 3.901e-06 32 4.329e-05 21 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad ENVELOPE View Gene Set 6.051e-06 165 6.13e-05 22 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 6.051e-06 165 6.13e-05 22 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 6.344e-06 140 6.159e-05 24 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 7.289e-06 290 6.793e-05 25 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad KINETOCHORE View Gene Set 9.561e-06 25 8.568e-05 26 Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 2.863e-05 44 0.0002382 27 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 2.802e-05 116 0.0002382 27 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM View Gene Set 7.801e-05 282 0.0006268 29 Genes annotated by the GO term GO:0005783. The irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. The ER takes two forms rough (or granular) with ribosomes adhering to the outer surface and smooth (with no ribosomes attached). www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 9.587e-05 146 0.0007446 30 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 0.0001467 95 0.001103 31 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE View Gene Set 0.0002607 85 0.001898 32 Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad SPINDLE_MICROTUBULE View Gene Set 0.0003182 15 0.002246 33 Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole. www.broad.mit.e...
Broad CYTOSKELETAL_PART View Gene Set 0.0003339 231 0.002288 34 Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 0.0003851 53 0.002564 35 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad NUCLEAR_UBIQUITIN_LIGASE_COMPLEX View Gene Set 0.0004113 11 0.002662 36 Genes annotated by the GO term GO:0000152. A ubiquitin ligase complex found in the nucleus. www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME View Gene Set 0.0004449 22 0.002728 37 Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle. www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME View Gene Set 0.0004449 22 0.002728 37 Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes. www.broad.mit.e...
Broad RIBOSOME View Gene Set 0.0004631 39 0.002767 39 Genes annotated by the GO term GO:0005840. An intracellular organelle about 200 A in diameter consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits one large and one small each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients expressed in Svedberg units (symbol: S). Hence the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes eukaryotes mitochondria and chloroplasts have characteristically distinct ribosomal proteins. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 0.0005406 202 0.003149 40 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE View Gene Set 0.0006491 74 0.003689 41 Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE_PART View Gene Set 0.0008066 52 0.004475 42 Genes annotated by the GO term GO:0044455. Any constituent part of the mitochondrial membrane either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad SPINDLE_POLE View Gene Set 0.0009822 17 0.005322 43 Genes annotated by the GO term GO:0000922. Either of the ends of a spindle where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules spindle microtubules and astral microtubules. www.broad.mit.e...
Broad MITOCHONDRIAL_INNER_MEMBRANE View Gene Set 0.001172 66 0.006204 44 Genes annotated by the GO term GO:0005743. The inner i.e. lumen-facing lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 0.001477 213 0.007649 45 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad RIBOSOMAL_SUBUNIT View Gene Set 0.001552 20 0.007864 46 Genes annotated by the GO term GO:0033279. Either of the two ribonucleoprotein complexes that associate to form a ribosome. www.broad.mit.e...
Broad MICROTUBULE View Gene Set 0.002392 31 0.01186 47 Genes annotated by the GO term GO:0005874. Any of the long generally straight hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation e.g. in the spindle. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 0.003212 71 0.01559 48 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad OLIGOSACCHARYL_TRANSFERASE_COMPLEX View Gene Set 0.00444 9 0.01989 49 Genes annotated by the GO term GO:0008250. A multisubunit protein complex in the endoplasmic reticulum membrane of eukaryotes that transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins; includes at least nine different subunits at least in yeast. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.004381 16 0.01989 49 Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX View Gene Set 0.004381 16 0.01989 49 Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.004381 16 0.01989 49 Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad MITOCHONDRIAL_OUTER_MEMBRANE View Gene Set 0.00688 18 0.03008 53 Genes annotated by the GO term GO:0005741. The outer i.e. cytoplasm-facing lipid bilayer of the mitochondrial envelope. www.broad.mit.e...
Broad CELL_MATRIX_JUNCTION View Gene Set 0.006972 16 0.03008 53 Genes annotated by the GO term GO:0030055. A specialized region of connection between a cell and the extracellular matrix. www.broad.mit.e...
Broad ORGANELLAR_SMALL_RIBOSOMAL_SUBUNIT View Gene Set 0.007515 11 0.03019 55 Genes annotated by the GO term GO:0000314. The smaller of the two subunits of an organellar ribosome. www.broad.mit.e...
Broad MITOCHONDRIAL_SMALL_RIBOSOMAL_SUBUNIT View Gene Set 0.007515 11 0.03019 55 Genes annotated by the GO term GO:0005763. The smaller of the two subunits of a mitochondrial ribosome. www.broad.mit.e...
Broad LATE_ENDOSOME View Gene Set 0.007191 12 0.03019 55 Genes annotated by the GO term GO:0005770. A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear being concentrated near the microtubule organizing center. www.broad.mit.e...
Broad SMALL_RIBOSOMAL_SUBUNIT View Gene Set 0.007515 11 0.03019 55 Genes annotated by the GO term GO:0015935. The smaller of the two subunits of a ribosome. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 0.007992 48 0.03156 59 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad PROTEASOME_COMPLEX View Gene Set 0.008392 23 0.03259 60 Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. www.broad.mit.e...
Broad FOCAL_ADHESION View Gene Set 0.008543 11 0.03263 61 Genes annotated by the GO term GO:0005925. Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART View Gene Set 0.009235 33 0.03471 62 Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad PROTON_TRANSPORTING_TWO_SECTOR_ATPASE_COMPLEX View Gene Set 0.009649 15 0.03568 63 Genes annotated by the GO term GO:0016469. A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0 V0 or A0) that carries out proton transport and a cytoplasmic compartment sector (F1 V1 or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient whereas F-type ATPases also known as ATP synthases normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type A-type ATPases have been found in archaea and are closely related to eukaryotic V-type ATPases but are reversible. www.broad.mit.e...
Broad CYTOSKELETON View Gene Set 0.01089 359 0.03963 64 Genes annotated by the GO term GO:0005856. Any of the various filamentous elements that form the internal framework of cells and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments microfilaments microtubules the microtrabecular lattice and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions including cellular movement cell division endocytosis and movement of organelles. www.broad.mit.e...
Broad MITOCHONDRIAL_MATRIX View Gene Set 0.01178 46 0.04095 65 Genes annotated by the GO term GO:0005759. The gel-like material with considerable fine structure that lies in the matrix space or lumen of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and in some organisms the enzymes concerned with fatty-acid oxidation. www.broad.mit.e...
Broad MITOCHONDRIAL_LUMEN View Gene Set 0.01178 46 0.04095 65 Genes annotated by the GO term GO:0031980. The volume enclosed by the mitochondrial inner membrane. www.broad.mit.e...
Broad CONDENSED_NUCLEAR_CHROMOSOME View Gene Set 0.01163 17 0.04095 65 Genes annotated by the GO term GO:0000794. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus. www.broad.mit.e...
Broad NUCLEAR_BODY View Gene Set 0.0134 31 0.04591 68 Genes annotated by the GO term GO:0016604. Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_BINDING View Gene Set 3.904e-10 236 1.546e-07 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad STRUCTURAL_CONSTITUENT_OF_RIBOSOME View Gene Set 1.965e-07 80 3.891e-05 2 Genes annotated by the GO term GO:0003735. The action of a molecule that contributes to the structural integrity of the ribosome. www.broad.mit.e...
Broad NUCLEOTIDYLTRANSFERASE_ACTIVITY View Gene Set 1.92e-05 47 0.002535 3 Genes annotated by the GO term GO:0016779. Catalysis of the transfer of a nucleotidyl group to a reactant. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 0.0001528 587 0.01513 4 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS View Gene Set 0.0002721 68 0.02155 5 Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad ACID_AMINO_ACID_LIGASE_ACTIVITY View Gene Set 0.0005704 57 0.02838 6 Genes annotated by the GO term GO:0016881. Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad LIGASE_ACTIVITY View Gene Set 0.000865 97 0.02838 6 Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM View Gene Set 0.0009317 14 0.02838 6 Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced. www.broad.mit.e...
Broad ENZYME_REGULATOR_ACTIVITY View Gene Set 0.0008022 315 0.02838 6 Genes annotated by the GO term GO:0030234. Modulates the activity of an enzyme. www.broad.mit.e...
Broad RNA_POLYMERASE_ACTIVITY View Gene Set 0.0006166 16 0.02838 6 Genes annotated by the GO term GO:0034062. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template. www.broad.mit.e...
Broad ENZYME_INHIBITOR_ACTIVITY View Gene Set 0.0008026 117 0.02838 6 Genes annotated by the GO term GO:0004857. Stops prevents or reduces the activity of an enzyme. www.broad.mit.e...
Broad SMALL_PROTEIN_CONJUGATING_ENZYME_ACTIVITY View Gene Set 0.0006568 52 0.02838 6 Genes annotated by the GO term GO:0008639. Catalysis of the covalent attachment of small proteins such as ubiquitin or ubiquitin-like proteins to lysine residues on a target protein. This function may be performed alone or in conjunction with an E3 ubiquitin-like protein ligase. www.broad.mit.e...
Broad UBIQUITIN_PROTEIN_LIGASE_ACTIVITY View Gene Set 0.0009312 49 0.02838 6 Genes annotated by the GO term GO:0004842. Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY_ACTING_ON_NADH_OR_NADPH View Gene Set 0.001209 25 0.03244 14 Genes annotated by the GO term GO:0016651. Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. www.broad.mit.e...
Broad SMALL_CONJUGATING_PROTEIN_LIGASE_ACTIVITY View Gene Set 0.001229 51 0.03244 14 Genes annotated by the GO term GO:0019787. Catalysis of ATP-dependent isopeptide bond formation between the carboxy-terminal residues of a small conjugating protein such as ubiquitin or a ubiquitin-like protein and a substrate lysine residue. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 9.897e-30 421 2.481e-26 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 1.495e-22 210 1.874e-19 2 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 1.586e-18 504 1.325e-15 3 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 3.126e-16 391 1.959e-13 4 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 2.155e-15 208 1.08e-12 5 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 1.217e-14 773 5.085e-12 6 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 16341674 View Gene Set 1.193e-12 392 4.272e-10 7 Transcriptome analysis of human gastric cancer. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 1.974e-11 317 6.186e-09 8 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 16130169 View Gene Set 1.245e-10 74 3.469e-08 9 Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. www.ncbi.nlm.ni...
PMID 10810093 View Gene Set 6.964e-10 151 1.746e-07 10 Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. www.ncbi.nlm.ni...
PMID 11042152 View Gene Set 1.521e-09 315 3.467e-07 11 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 3.932e-09 102 8.215e-07 12 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 15189156 View Gene Set 1.471e-08 88 2.838e-06 13 The molecular mechanics of eukaryotic translation. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 6.887e-08 106 1.233e-05 14 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 1.122e-07 108 1.875e-05 15 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 12221128 View Gene Set 1.463e-07 70 2.292e-05 16 Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex. www.ncbi.nlm.ni...
PMID 19237606 View Gene Set 2.156e-07 84 2.845e-05 17 Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk. www.ncbi.nlm.ni...
PMID 19738611 View Gene Set 2.12e-07 39 2.845e-05 17 Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis. www.ncbi.nlm.ni...
PMID 8722009 View Gene Set 2.073e-07 80 2.845e-05 17 Structure and evolution of mammalian ribosomal proteins. www.ncbi.nlm.ni...
PMID 17220478 View Gene Set 4.853e-07 63 6.083e-05 20 Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells. www.ncbi.nlm.ni...
PMID 11285280 View Gene Set 7.906e-07 62 9.438e-05 21 Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 8.487e-07 693 9.672e-05 22 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 11076968 View Gene Set 1.417e-06 62 0.0001367 23 The centrosomal protein C-Nap1 is required for cell cycle-regulated centrosome cohesion. www.ncbi.nlm.ni...
PMID 12852856 View Gene Set 1.417e-06 61 0.0001367 23 Polo-like kinase 1 regulates Nlp a centrosome protein involved in microtubule nucleation. www.ncbi.nlm.ni...
PMID 16462731 View Gene Set 1.417e-06 62 0.0001367 23 The PITSLRE/CDK11p58 protein kinase promotes centrosome maturation and bipolar spindle formation. www.ncbi.nlm.ni...
PMID 7790358 View Gene Set 1.417e-06 61 0.0001367 23 Cell cycle regulation of the activity and subcellular localization of Plk1 a human protein kinase implicated in mitotic spindle function. www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 1.684e-06 522 0.0001563 27 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 8084338 View Gene Set 1.797e-06 21 0.0001609 28 HIV-1 gp41 binding proteins and antibodies to gp41 could inhibit enhancement of human Raji cell MHC class I and II expression by gp41. www.ncbi.nlm.ni...
PMID 9582194 View Gene Set 2.491e-06 67 0.0002154 29 A map of 75 human ribosomal protein genes. www.ncbi.nlm.ni...
PMID 12956878 View Gene Set 2.757e-06 10 0.0002304 30 Roles of HLA-B HLA-C and HLA-DPA1 incompatibilities in the outcome of unrelated stem-cell transplantation. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 3.527e-06 58 0.0002852 31 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 3.953e-06 182 0.0003097 32 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 4.201e-06 58 0.0003098 33 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 14667819 View Gene Set 4.124e-06 112 0.0003098 33 Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. www.ncbi.nlm.ni...
PMID 7821789 View Gene Set 5.461e-06 59 0.0003912 35 Construction of a human full-length cDNA bank. www.ncbi.nlm.ni...
PMID 12427289 View Gene Set 6.352e-06 20 0.0004423 36 HIV-1 gp120 modulates the immunological function and expression of accessory and co-stimulatory molecules of monocyte-derived dendritic cells. www.ncbi.nlm.ni...
PMID 14519844 View Gene Set 7.44e-06 17 0.0005041 37 Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins. www.ncbi.nlm.ni...
PMID 14567916 View Gene Set 1.018e-05 50 0.0006715 38 Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control. www.ncbi.nlm.ni...
PMID 1286669 View Gene Set 1.058e-05 28 0.0006803 39 Human liver protein map: a reference database established by microsequencing and gel comparison. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 1.101e-05 68 0.0006903 40 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 11875025 View Gene Set 1.153e-05 41 0.0007048 41 The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. www.ncbi.nlm.ni...
PMID 19596235 View Gene Set 1.278e-05 85 0.0007627 42 Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. www.ncbi.nlm.ni...
PMID 16712791 View Gene Set 1.319e-05 342 0.0007691 43 Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. www.ncbi.nlm.ni...
PMID 15009096 View Gene Set 1.651e-05 39 0.0009409 44 Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase. www.ncbi.nlm.ni...
PMID 15029244 View Gene Set 1.803e-05 57 0.001004 45 Mammalian Cdh1/Fzr mediates its own degradation. www.ncbi.nlm.ni...
PMID 19468067 View Gene Set 1.867e-05 10 0.001018 46 Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly. www.ncbi.nlm.ni...
PMID 18809582 View Gene Set 1.908e-05 25 0.001018 47 Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome. www.ncbi.nlm.ni...
PMID 15504738 View Gene Set 2.055e-05 19 0.001073 48 Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 2.139e-05 74 0.001094 49 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 2.244e-05 51 0.001125 50 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 2.375e-05 22 0.001168 51 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 20522537 View Gene Set 2.624e-05 73 0.001265 52 Variation within DNA repair pathway genes and risk of multiple sclerosis. www.ncbi.nlm.ni...
PMID 19115949 View Gene Set 2.711e-05 18 0.001282 53 Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). www.ncbi.nlm.ni...
PMID 18482256 View Gene Set 2.847e-05 44 0.001322 54 Protein microarray analysis identifies human cellular prion protein interactors. www.ncbi.nlm.ni...
PMID 17081065 View Gene Set 3.067e-05 80 0.001398 55 Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. www.ncbi.nlm.ni...
PMID 19019082 View Gene Set 3.484e-05 49 0.00156 56 Proteomic analysis reveals Hrs ubiquitin-interacting motif-mediated ubiquitin signaling in multiple cellular processes. www.ncbi.nlm.ni...
PMID 1602151 View Gene Set 4.054e-05 99 0.001783 57 Treatment of Haemophilus aphrophilus endocarditis with ciprofloxacin. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 4.533e-05 48 0.001959 58 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 12791267 View Gene Set 4.869e-05 50 0.002069 59 Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase. www.ncbi.nlm.ni...
PMID 17363900 View Gene Set 6.013e-05 14 0.002512 60 The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. www.ncbi.nlm.ni...
PMID 18063578 View Gene Set 6.501e-05 31 0.002672 61 The layered structure of human mitochondrial DNA nucleoids. www.ncbi.nlm.ni...
PMID 11401437 View Gene Set 7.553e-05 27 0.003054 62 A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. www.ncbi.nlm.ni...
PMID 17540176 View Gene Set 7.91e-05 28 0.003148 63 The tumor suppressor PP2A Abeta regulates the RalA GTPase. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 8.293e-05 37 0.003248 64 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 16622419 View Gene Set 8.792e-05 16 0.003391 65 The human CENP-A centromeric nucleosome-associated complex. www.ncbi.nlm.ni...
PMID 14505570 View Gene Set 0.0001052 17 0.003995 66 The protein network of HIV budding. www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 0.0001227 212 0.00459 67 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 16622420 View Gene Set 0.0001258 14 0.004639 68 The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres. www.ncbi.nlm.ni...
PMID 15489336 View Gene Set 0.0001472 722 0.005349 69 From ORFeome to biology: a functional genomics pipeline. www.ncbi.nlm.ni...
PMID 10931946 View Gene Set 0.0001598 118 0.005643 70 Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. www.ncbi.nlm.ni...
PMID 8662825 View Gene Set 0.0001589 10 0.005643 70 Cyclin-dependent kinases are inactivated by a combination of p21 and Thr-14/Tyr-15 phosphorylation after UV-induced DNA damage. www.ncbi.nlm.ni...
PMID 16381901 View Gene Set 0.0001709 720 0.005952 72 The LIFEdb database in 2006. www.ncbi.nlm.ni...
PMID 12620389 View Gene Set 0.0001777 23 0.006104 73 Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis. www.ncbi.nlm.ni...
PMID 16236267 View Gene Set 0.0001812 77 0.006139 74 Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress. www.ncbi.nlm.ni...
PMID 15502821 View Gene Set 0.0002404 12 0.008037 75 A conserved Mis12 centromere complex is linked to heterochromatic HP1 and outer kinetochore protein Zwint-1. www.ncbi.nlm.ni...
PMID 9150948 View Gene Set 0.0002479 15 0.008178 76 A two-dimensional gel database of human colon carcinoma proteins. www.ncbi.nlm.ni...
PMID 14564014 View Gene Set 0.0002554 47 0.008316 77 Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. www.ncbi.nlm.ni...
PMID 15835887 View Gene Set 0.0002634 12 0.00836 78 Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61 TRAP and two potential new subunits. www.ncbi.nlm.ni...
PMID 16713569 View Gene Set 0.0002627 570 0.00836 78 A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. www.ncbi.nlm.ni...
PMID 15232106 View Gene Set 0.0002905 30 0.009103 80 Self-assembling protein microarrays. www.ncbi.nlm.ni...
PMID 10729169 View Gene Set 0.0003173 15 0.009249 81 Efficient incorporation of HLA class II onto human immunodeficiency virus type 1 requires envelope glycoprotein packaging. www.ncbi.nlm.ni...
PMID 12754519 View Gene Set 0.0003074 71 0.009249 81 Identification and quantification of N-linked glycoproteins using hydrazide chemistry stable isotope labeling and mass spectrometry. www.ncbi.nlm.ni...
PMID 3489470 View Gene Set 0.0003173 15 0.009249 81 AIDS and related syndromes as a viral-induced autoimmune disease of the immune system: an anti-MHC II disorder. Therapeutic implications. www.ncbi.nlm.ni...
PMID 7602119 View Gene Set 0.0003173 15 0.009249 81 Endocytosis of endogenously synthesized HIV-1 envelope protein. Mechanism and role in processing for association with class II MHC. www.ncbi.nlm.ni...
PMID 8376762 View Gene Set 0.0003173 15 0.009249 81 HIV-1 envelope protein is expressed on the surface of infected cells before its processing and presentation to class II-restricted T lymphocytes. www.ncbi.nlm.ni...
PMID 9079699 View Gene Set 0.0003173 15 0.009249 81 The enhanced immune response to the HIV gp160/LAMP chimeric gene product targeted to the lysosome membrane protein trafficking pathway. www.ncbi.nlm.ni...
PMID 10531035 View Gene Set 0.0003413 37 0.009835 87 Identification of a family of human F-box proteins. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 0.0003621 34 0.01031 88 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 0.0003718 24 0.01047 89 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 10893419 View Gene Set 0.0004376 41 0.01135 90 Degradation of HIV-1 integrase by the N-end rule pathway. www.ncbi.nlm.ni...
PMID 11742988 View Gene Set 0.0004249 20 0.01135 90 APC/C-mediated destruction of the centrosomal kinase Nek2A occurs in early mitosis and depends upon a cyclin A-type D-box. www.ncbi.nlm.ni...
PMID 12419264 View Gene Set 0.0004376 41 0.01135 90 The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing. www.ncbi.nlm.ni...
PMID 14550573 View Gene Set 0.0004376 41 0.01135 90 Human immunodeficiency virus-1 Tat protein interacts with distinct proteasomal alpha and beta subunits. www.ncbi.nlm.ni...
PMID 15078178 View Gene Set 0.0004321 19 0.01135 90 HIV/SIV escape from immune surveillance: focus on Nef. www.ncbi.nlm.ni...
PMID 15146077 View Gene Set 0.000439 32 0.01135 90 The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. www.ncbi.nlm.ni...
PMID 9079628 View Gene Set 0.0004376 41 0.01135 90 HIV-1 tat inhibits the 20 S proteasome and its 11 S regulator-mediated activation. www.ncbi.nlm.ni...
PMID 9223324 View Gene Set 0.0004145 16 0.01135 90 Tat protein induces self-perpetuating permissivity for productive HIV-1 infection. www.ncbi.nlm.ni...
PMID 12956947 View Gene Set 0.0004785 15 0.012 98 TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1. www.ncbi.nlm.ni...
PMID 14749816 View Gene Set 0.0004751 15 0.012 98 Molecular motors: turning the ATP motor. www.ncbi.nlm.ni...
PMID 9834036 View Gene Set 0.0004751 15 0.012 98 Energy transduction in the F1 motor of ATP synthase. www.ncbi.nlm.ni...
PMID 17289661 View Gene Set 0.0004866 35 0.01208 101 Molecular composition of IMP1 ribonucleoprotein granules. www.ncbi.nlm.ni...
PMID 4517936 View Gene Set 0.0005007 15 0.01231 102 A new concept for energy coupling in oxidative phosphorylation based on a molecular explanation of the oxygen exchange reactions. www.ncbi.nlm.ni...
PMID 10318877 View Gene Set 0.0006184 10 0.01263 103 Characterization of the DOC1/APC10 subunit of the yeast and the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 11535616 View Gene Set 0.0006197 18 0.01263 103 Checkpoint inhibition of the APC/C in HeLa cells is mediated by a complex of BUBR1 BUB3 CDC20 and MAD2. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 0.000611 31 0.01263 103 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 12719574 View Gene Set 0.0006142 42 0.01263 103 Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions. www.ncbi.nlm.ni...
PMID 12750511 View Gene Set 0.0006142 42 0.01263 103 Hypermutation of HIV-1 DNA in the absence of the Vif protein. www.ncbi.nlm.ni...
PMID 12830140 View Gene Set 0.0006142 42 0.01263 103 DNA deamination: not just a trigger for antibody diversification but also a mechanism for defense against retroviruses. www.ncbi.nlm.ni...
PMID 12840737 View Gene Set 0.0006142 42 0.01263 103 Good to CU. www.ncbi.nlm.ni...
PMID 12914693 View Gene Set 0.0006142 42 0.01263 103 Death by deamination: a novel host restriction system for HIV-1. www.ncbi.nlm.ni...
PMID 12920286 View Gene Set 0.0006142 42 0.01263 103 Virology. Weapons of mutational destruction. www.ncbi.nlm.ni...
PMID 14593737 View Gene Set 0.0006197 18 0.01263 103 The mitotic checkpoint: a signaling pathway that allows a single unattached kinetochore to inhibit mitotic exit. www.ncbi.nlm.ni...
PMID 14614829 View Gene Set 0.0006142 42 0.01263 103 The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G. www.ncbi.nlm.ni...
PMID 15164054 View Gene Set 0.000575 346 0.01263 103 The DNA sequence and comparative analysis of human chromosome 10. www.ncbi.nlm.ni...
PMID 15691386 View Gene Set 0.0005406 12 0.01263 103 HIV-1 Tat protein enhances microtubule polymerization. www.ncbi.nlm.ni...
PMID 15698476 View Gene Set 0.0005406 12 0.01263 103 HIV-1 Tat apoptosis and the mitochondria: a tubulin link? www.ncbi.nlm.ni...
PMID 19258477 View Gene Set 0.0005407 13 0.01263 103 Candidate gene analysis using imputed genotypes: cell cycle single-nucleotide polymorphisms and ovarian cancer risk. www.ncbi.nlm.ni...
PMID 1978941 View Gene Set 0.0006187 16 0.01263 103 Identification and structural analysis of residues in the V1 region of CD4 involved in interaction with human immunodeficiency virus envelope glycoprotein gp120 and class II major histocompatibility complex molecules. www.ncbi.nlm.ni...
PMID 2543930 View Gene Set 0.0006187 16 0.01263 103 Identification of human CD4 residues affecting class II MHC versus HIV-1 gp120 binding. www.ncbi.nlm.ni...
PMID 2846691 View Gene Set 0.0006187 16 0.01263 103 Inhibition of CD4+ T cell function by the HIV envelope protein gp120. www.ncbi.nlm.ni...
PMID 9190208 View Gene Set 0.000598 10 0.01263 103 Cyclin D1/Cdk4 regulates retinoblastoma protein-mediated cell cycle arrest by site-specific phosphorylation. www.ncbi.nlm.ni...
PMID 9811770 View Gene Set 0.0006142 42 0.01263 103 An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein. www.ncbi.nlm.ni...
PMID 9846577 View Gene Set 0.0006142 42 0.01263 103 Evidence for a newly discovered cellular anti-HIV-1 phenotype. www.ncbi.nlm.ni...
PMID 15231748 View Gene Set 0.0006438 519 0.01302 124 Functional proteomics mapping of a human signaling pathway. www.ncbi.nlm.ni...
PMID 12379213 View Gene Set 0.0006795 18 0.01343 125 Transcription factor TFIIH components enhance the GR coactivator activity but not the cell cycle-arresting activity of the human immunodeficiency virus type-1 protein Vpr. www.ncbi.nlm.ni...
PMID 1693624 View Gene Set 0.0006757 10 0.01343 125 Integrin recognition of different cell-binding fragments of laminin (P1 E3 E8) and evidence that alpha 6 beta 1 but not alpha 6 beta 4 functions as a major receptor for fragment E8. www.ncbi.nlm.ni...
PMID 8811196 View Gene Set 0.0006802 37 0.01343 125 Structure and functions of the 20S and 26S proteasomes. www.ncbi.nlm.ni...
PMID 9461222 View Gene Set 0.0007007 14 0.01372 128 Energy transduction in ATP synthase. www.ncbi.nlm.ni...
PMID 16730941 View Gene Set 0.0007177 55 0.01384 129 A systematic analysis of human CHMP protein interactions: additional MIT domain-containing proteins bind to multiple components of the human ESCRT III complex. www.ncbi.nlm.ni...
PMID 17388661 View Gene Set 0.0007158 24 0.01384 129 Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen. www.ncbi.nlm.ni...
PMID 10811835 View Gene Set 0.0007611 11 0.01446 131 The tetraspan molecule CD151 a novel constituent of hemidesmosomes associates with the integrin alpha6beta4 and may regulate the spatial organization of hemidesmosomes. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 0.0007559 22 0.01446 131 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...
PMID 12588972 View Gene Set 0.0008771 56 0.01641 133 Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region. www.ncbi.nlm.ni...
PMID 9121429 View Gene Set 0.0008722 39 0.01641 133 The human immunodeficiency virus transactivator Tat interacts with the RNA polymerase II holoenzyme. www.ncbi.nlm.ni...
PMID 8706699 View Gene Set 0.0009031 35 0.01677 135 Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing and mass spectrometry. www.ncbi.nlm.ni...
PMID 11205743 View Gene Set 0.0009147 15 0.01686 136 Polo-like kinase interacts with proteasomes and regulates their activity. www.ncbi.nlm.ni...
PMID 12665801 View Gene Set 0.0009508 261 0.0174 137 Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. www.ncbi.nlm.ni...
PMID 9512541 View Gene Set 0.0009916 26 0.01788 138 Isolation and characterization of a human cDNA for mRNA 5'-capping enzyme. www.ncbi.nlm.ni...
PMID 9790902 View Gene Set 0.0009916 26 0.01788 138 Cloning and characterization of three human cDNAs encoding mRNA (guanine-7-)-methyltransferase an mRNA cap methylase. www.ncbi.nlm.ni...
PMID 1869305 View Gene Set 0.001039 14 0.01847 140 Interaction of CD4 with HLA class II antigens and HIV gp120. www.ncbi.nlm.ni...
PMID 7512597 View Gene Set 0.001039 14 0.01847 140 HLA class II antigens and the HIV envelope glycoprotein gp120 bind to the same face of CD4. www.ncbi.nlm.ni...
PMID 15883184 View Gene Set 0.001048 31 0.0185 142 Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes. www.ncbi.nlm.ni...
PMID 10793135 View Gene Set 0.001065 18 0.01868 143 Mitotic regulation of the APC activator proteins CDC20 and CDH1. www.ncbi.nlm.ni...
PMID 18950845 View Gene Set 0.001093 88 0.01902 144 Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. www.ncbi.nlm.ni...
PMID 18485873 View Gene Set 0.001131 13 0.01955 145 Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 9311822 View Gene Set 0.00115 22 0.01975 146 A human primary T-lymphocyte-derived human immunodeficiency virus type 1 Tat-associated kinase phosphorylates the C-terminal domain of RNA polymerase II and induces CAK activity. www.ncbi.nlm.ni...
PMID 9184228 View Gene Set 0.001186 21 0.02008 147 Purification of a Tat-associated kinase reveals a TFIIH complex that modulates HIV-1 transcription. www.ncbi.nlm.ni...
PMID 9334327 View Gene Set 0.001186 21 0.02008 147 The HIV transactivator TAT binds to the CDK-activating kinase and activates the phosphorylation of the carboxy-terminal domain of RNA polymerase II. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 0.001204 748 0.02012 149 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 16091223 View Gene Set 0.001199 14 0.02012 149 HIV accessory proteins and surviving the host cell. www.ncbi.nlm.ni...
PMID 19536092 View Gene Set 0.00131 55 0.02175 151 Explorative study to identify novel candidate genes related to oxaliplatin efficacy and toxicity using a DNA repair array. www.ncbi.nlm.ni...
PMID 14760703 View Gene Set 0.00132 40 0.02176 152 Proteomic identification of brain proteins that interact with dynein light chain LC8. www.ncbi.nlm.ni...
PMID 11829477 View Gene Set 0.001336 13 0.02189 153 Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex. www.ncbi.nlm.ni...
PMID 10908577 View Gene Set 0.001347 14 0.02193 154 HIV-1 rev depolymerizes microtubules to form stable bilayered rings. www.ncbi.nlm.ni...
PMID 12167863 View Gene Set 0.001452 43 0.02207 155 Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. www.ncbi.nlm.ni...
PMID 12808465 View Gene Set 0.001452 43 0.02207 155 The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. www.ncbi.nlm.ni...
PMID 12808466 View Gene Set 0.001452 43 0.02207 155 Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. www.ncbi.nlm.ni...
PMID 12809610 View Gene Set 0.001452 43 0.02207 155 DNA deamination mediates innate immunity to retroviral infection. www.ncbi.nlm.ni...
PMID 12970355 View Gene Set 0.001452 43 0.02207 155 The enzymatic activity of CEM15/Apobec-3G is essential for the regulation of the infectivity of HIV-1 virion but not a sole determinant of its antiviral activity. www.ncbi.nlm.ni...
PMID 14527406 View Gene Set 0.001452 43 0.02207 155 HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. www.ncbi.nlm.ni...
PMID 14528300 View Gene Set 0.001452 43 0.02207 155 The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. www.ncbi.nlm.ni...
PMID 14528301 View Gene Set 0.001452 43 0.02207 155 HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation. www.ncbi.nlm.ni...
PMID 14557625 View Gene Set 0.001452 43 0.02207 155 The human immunodeficiency virus type 1 Vif protein reduces intracellular expression and inhibits packaging of APOBEC3G (CEM15) a cellular inhibitor of virus infectivity. www.ncbi.nlm.ni...
PMID 15130578 View Gene Set 0.001448 22 0.02207 155 Why do cells need an assembly machine for RNA-protein complexes? www.ncbi.nlm.ni...
PMID 9244350 View Gene Set 0.001405 11 0.02207 155 BRCA1 proteins are transported to the nucleus in the absence of serum and splice variants BRCA1a BRCA1b are tyrosine phosphoproteins that associate with E2F cyclins and cyclin dependent kinases. www.ncbi.nlm.ni...
PMID 18270339 View Gene Set 0.001488 57 0.02247 166 Comprehensive analysis of DNA repair gene variants and risk of meningioma. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 0.001507 23 0.02263 167 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 18954305 View Gene Set 0.001594 13 0.02379 168 Structural basis and specificity of human otubain 1-mediated deubiquitination. www.ncbi.nlm.ni...
PMID 8076819 View Gene Set 0.0017 37 0.02522 169 The addition of 5'-coding information to a 3'-directed cDNA library improves analysis of gene expression. www.ncbi.nlm.ni...
PMID 11799067 View Gene Set 0.001736 10 0.02559 170 E2F integrates cell cycle progression with DNA repair replication and G(2)/M checkpoints. www.ncbi.nlm.ni...
PMID 18988749 View Gene Set 0.001756 14 0.02559 170 MALDI-TOF MS genotyping of polymorphisms related to 1-carbon metabolism using common and mass-modified terminators. www.ncbi.nlm.ni...
PMID 9409616 View Gene Set 0.001754 17 0.02559 170 Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. www.ncbi.nlm.ni...
PMID 8934526 View Gene Set 0.001768 25 0.02562 173 Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain. www.ncbi.nlm.ni...
PMID 15782174 View Gene Set 0.00181 31 0.02608 174 Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. www.ncbi.nlm.ni...
PMID 11416179 View Gene Set 0.001822 12 0.0261 175 All kinesin superfamily protein KIF genes in mouse and human. www.ncbi.nlm.ni...
PMID 14505569 View Gene Set 0.001839 14 0.02619 176 AIP1/ALIX is a binding partner for HIV-1 p6 and EIAV p9 functioning in virus budding. www.ncbi.nlm.ni...
PMID 1967269 View Gene Set 0.001901 15 0.02677 177 HIV-gp120 can block CD4-class II MHC-mediated adhesion. www.ncbi.nlm.ni...
PMID 8168144 View Gene Set 0.001901 15 0.02677 177 Envelope glycoproteins of HIV-1 interfere with T-cell-dependent B cell differentiation: role of CD4-MHC class II interaction in the effector phase of T cell help. www.ncbi.nlm.ni...
PMID 20085707 View Gene Set 0.001914 42 0.02681 179 Aire's partners in the molecular control of immunological tolerance. www.ncbi.nlm.ni...
PMID 12962325 View Gene Set 0.001978 22 0.02746 180 Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. www.ncbi.nlm.ni...
PMID 18281541 View Gene Set 0.001983 14 0.02746 180 Effects of common germ-line genetic variation in cell cycle genes on ovarian cancer survival. www.ncbi.nlm.ni...
PMID 10500174 View Gene Set 0.002063 10 0.02841 182 Expression of the CDH1-associated form of the anaphase-promoting complex in postmitotic neurons. www.ncbi.nlm.ni...
PMID 18997788 View Gene Set 0.002097 10 0.02873 183 The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction. www.ncbi.nlm.ni...
PMID 11799066 View Gene Set 0.002138 21 0.02905 184 Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. www.ncbi.nlm.ni...
PMID 19124506 View Gene Set 0.002144 118 0.02905 184 Common genetic variation in candidate genes and susceptibility to subtypes of breast cancer. www.ncbi.nlm.ni...
PMID 9852112 View Gene Set 0.002188 20 0.02949 186 Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes. www.ncbi.nlm.ni...
PMID 12836198 View Gene Set 0.002239 17 0.03002 187 [The HIV nef and the Kaposi-sarcoma-associated virus K3/K5 proteins: "parasites"of the endocytosis pathway]. www.ncbi.nlm.ni...
PMID 14697242 View Gene Set 0.002401 15 0.03184 188 Chromosome 13q12 encoded Rho GTPase activating protein suppresses growth of breast carcinoma cells and yeast two-hybrid screen shows its interaction with several proteins. www.ncbi.nlm.ni...
PMID 15331610 View Gene Set 0.002396 12 0.03184 188 The glutamine-rich region of the HIV-1 Tat protein is involved in T-cell apoptosis. www.ncbi.nlm.ni...
PMID 12228227 View Gene Set 0.002456 30 0.03241 190 Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1. www.ncbi.nlm.ni...
PMID 11564863 View Gene Set 0.002653 23 0.03468 191 Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo. www.ncbi.nlm.ni...
PMID 16436505 View Gene Set 0.002656 11 0.03468 191 HIV-1 Tat regulates endothelial cell cycle progression via activation of the Ras/ERK MAPK signaling pathway. www.ncbi.nlm.ni...
PMID 19836008 View Gene Set 0.002714 10 0.03526 193 A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma. www.ncbi.nlm.ni...
PMID 11060040 View Gene Set 0.002764 15 0.03536 194 Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. www.ncbi.nlm.ni...
PMID 12486001 View Gene Set 0.002745 15 0.03536 194 HIV-1 Tat targets microtubules to induce apoptosis a process promoted by the pro-apoptotic Bcl-2 relative Bim. www.ncbi.nlm.ni...
PMID 16272310 View Gene Set 0.002758 10 0.03536 194 Functional analysis of HIV type 1 Nef reveals a role for PAK2 as a regulator of cell phenotype and function in the murine dendritic cell line DC2.4. www.ncbi.nlm.ni...
PMID 17672918 View Gene Set 0.002817 64 0.03585 197 Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. www.ncbi.nlm.ni...
PMID 19690177 View Gene Set 0.00293 31 0.0371 198 Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk. www.ncbi.nlm.ni...
PMID 12070128 View Gene Set 0.003002 17 0.03782 199 Human securin proteolysis is controlled by the spindle checkpoint and reveals when the APC/C switches from activation by Cdc20 to Cdh1. www.ncbi.nlm.ni...
PMID 15149599 View Gene Set 0.003024 12 0.0379 200 Telomere shortening triggers senescence of human cells through a pathway involving ATM p53 and p21(CIP1) but not p16(INK4a). www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS51192 View Gene Set 7.669e-08 112 2.818e-05 1 HELICASE_ATP_BIND_1 expasy.org/pros...
Null PS51194 View Gene Set 4.776e-08 113 2.818e-05 1 HELICASE_CTER expasy.org/pros...
Null PS50102 View Gene Set 3.35e-07 229 8.208e-05 3 RRM expasy.org/pros...
Null PS50067 View Gene Set 2.52e-05 46 0.004124 4 KINESIN_MOTOR_DOMAIN2 expasy.org/pros...
Null PS50294 View Gene Set 3.057e-05 245 0.004124 4 WD_REPEATS_REGION expasy.org/pros...
Null PS51195 View Gene Set 3.367e-05 37 0.004124 4 Q_MOTIF expasy.org/pros...
Null PS00039 View Gene Set 4.354e-05 27 0.004571 7 DEAD_ATP_HELICASE expasy.org/pros...
Null PS50174 View Gene Set 5.57e-05 25 0.005118 8 G_PATCH expasy.org/pros...
Null PS50082 View Gene Set 7.324e-05 233 0.005982 9 WD_REPEATS_2 expasy.org/pros...
Null PS00411 View Gene Set 8.998e-05 42 0.006614 10 KINESIN_MOTOR_DOMAIN1 expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:3.6.3.14 View Gene Set 0.0001154 45 0.01823 1 H(+)-transporting two-sector ATPase expasy.org/enzy...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.CDKN1A View Gene Set 3e-05 9 0.002835 1 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 1.964e-05 44 0.002835 1 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.E2F1 View Gene Set 5.718e-05 12 0.003603 3 Protein-protein-interaction for E2F1 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0003472 16 0.01641 4 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 0.0006107 7 0.02308 5 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.RBL2 View Gene Set 0.0007825 14 0.02465 6 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.RAD51 View Gene Set 0.001003 7 0.02708 7 Protein-protein-interaction for RAD51 www.ncbi.nlm.ni...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 8.443e-10 236 1.939e-06 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 7.794e-09 101 8.951e-06 2 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.792e-08 147 1.372e-05 3 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 1.793e-06 37 0.00103 4 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 2.793e-06 168 0.001283 5 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 3.44e-06 95 0.001317 6 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 9.593e-06 38 0.002754 7 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 8.877e-06 50 0.002754 7 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 1.958e-05 28 0.004998 9 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 2.445e-05 79 0.005105 10 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 2.322e-05 42 0.005105 10 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.MIS12 View Gene Set 3.419e-05 9 0.006544 12 Protein-protein-interaction for MIS12 www.ncbi.nlm.ni...
Null ppi.GIYD2 View Gene Set 4.699e-05 32 0.008303 13 Protein-protein-interaction for GIYD2 www.ncbi.nlm.ni...
Null ppi.MED26 View Gene Set 6.903e-05 22 0.01133 14 Protein-protein-interaction for MED26 www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 8.148e-05 31 0.01248 15 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 0.0001154 40 0.01656 16 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.NPM1 View Gene Set 0.0001476 16 0.01884 17 Protein-protein-interaction for NPM1 www.ncbi.nlm.ni...
Null ppi.DDA1 View Gene Set 0.0001458 44 0.01884 17 Protein-protein-interaction for DDA1 www.ncbi.nlm.ni...
Null ppi.FEN1 View Gene Set 0.0001628 11 0.01968 19 Protein-protein-interaction for FEN1 www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.0001791 17 0.02007 20 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.TP53BP1 View Gene Set 0.0001918 13 0.02007 20 Protein-protein-interaction for TP53BP1 www.ncbi.nlm.ni...
Null ppi.BANF1 View Gene Set 0.0001922 34 0.02007 20 Protein-protein-interaction for BANF1 www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 0.0002348 38 0.02345 23 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 0.0002584 21 0.02473 24 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.GIGYF2 View Gene Set 0.000297 17 0.02526 25 Protein-protein-interaction for GIGYF2 www.ncbi.nlm.ni...
Null ppi.UBC View Gene Set 0.0002918 293 0.02526 25 Protein-protein-interaction for UBC www.ncbi.nlm.ni...
Null ppi.SUPT3H View Gene Set 0.0002967 14 0.02526 25 Protein-protein-interaction for SUPT3H www.ncbi.nlm.ni...
Null ppi.MAD2L1BP View Gene Set 0.0003426 7 0.0281 28 Protein-protein-interaction for MAD2L1BP www.ncbi.nlm.ni...
Null ppi.HDAC2 View Gene Set 0.000379 34 0.02869 29 Protein-protein-interaction for HDAC2 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 0.0003873 23 0.02869 29 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.HGS View Gene Set 0.0003691 46 0.02869 29 Protein-protein-interaction for HGS www.ncbi.nlm.ni...
Null ppi.DSN1 View Gene Set 0.0004546 8 0.03263 32 Protein-protein-interaction for DSN1 www.ncbi.nlm.ni...
Null ppi.HDAC1 View Gene Set 0.0005246 67 0.03544 33 Protein-protein-interaction for HDAC1 www.ncbi.nlm.ni...
Null ppi.UBA5 View Gene Set 0.000518 35 0.03544 33 Protein-protein-interaction for UBA5 www.ncbi.nlm.ni...
Null ppi.RAD18 View Gene Set 0.0005762 14 0.0369 35 Protein-protein-interaction for RAD18 www.ncbi.nlm.ni...
Null ppi.RBL2 View Gene Set 0.0005783 19 0.0369 35 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.ANAPC10 View Gene Set 0.0006336 9 0.0383 37 Protein-protein-interaction for ANAPC10 www.ncbi.nlm.ni...
Null ppi.CBX1 View Gene Set 0.0006231 17 0.0383 37 Protein-protein-interaction for CBX1 www.ncbi.nlm.ni...
Null ppi.SKP2 View Gene Set 0.0006661 24 0.03923 39 Protein-protein-interaction for SKP2 www.ncbi.nlm.ni...
Null ppi.MED6 View Gene Set 0.0009035 16 0.04324 40 Protein-protein-interaction for MED6 www.ncbi.nlm.ni...
Null ppi.CDKN1A View Gene Set 0.0007801 14 0.04324 40 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.LILRB1 View Gene Set 0.0008461 7 0.04324 40 Protein-protein-interaction for LILRB1 www.ncbi.nlm.ni...
Null ppi.UBE2C View Gene Set 0.0008654 6 0.04324 40 Protein-protein-interaction for UBE2C www.ncbi.nlm.ni...
Null ppi.CBX3 View Gene Set 0.0008714 23 0.04324 40 Protein-protein-interaction for CBX3 www.ncbi.nlm.ni...
Null ppi.PLDN View Gene Set 0.0008994 6 0.04324 40 Protein-protein-interaction for PLDN www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 0.0008934 33 0.04324 40 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.AMOTL2 View Gene Set 0.0008542 7 0.04324 40 Protein-protein-interaction for AMOTL2 www.ncbi.nlm.ni...
Null ppi.DERL1 View Gene Set 0.0008969 10 0.04324 40 Protein-protein-interaction for DERL1 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.000986 7 0.04549 49 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.MED24 View Gene Set 0.0009901 20 0.04549 49 Protein-protein-interaction for MED24 www.ncbi.nlm.ni...
Null ppi.RPLP1 View Gene Set 0.001036 8 0.04666 51 Protein-protein-interaction for RPLP1 www.ncbi.nlm.ni...
Null ppi.FZR1 View Gene Set 0.001059 10 0.04678 52 Protein-protein-interaction for FZR1 www.ncbi.nlm.ni...
Null ppi.PSMA3 View Gene Set 0.001123 6 0.04701 53 Protein-protein-interaction for PSMA3 www.ncbi.nlm.ni...
Null ppi.NRIP1 View Gene Set 0.001125 23 0.04701 53 Protein-protein-interaction for NRIP1 www.ncbi.nlm.ni...
Null ppi.AURKB View Gene Set 0.001126 9 0.04701 53 Protein-protein-interaction for AURKB www.ncbi.nlm.ni...
Null ppi.UIMC1 View Gene Set 0.001199 30 0.0483 56 Protein-protein-interaction for UIMC1 www.ncbi.nlm.ni...
Null ppi.CHFR View Gene Set 0.001183 18 0.0483 56 Protein-protein-interaction for CHFR www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 0.00133 12 0.04848 58 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.PRSS23 View Gene Set 0.001321 13 0.04848 58 Protein-protein-interaction for PRSS23 www.ncbi.nlm.ni...
Null ppi.DSTYK View Gene Set 0.001271 11 0.04848 58 Protein-protein-interaction for DSTYK www.ncbi.nlm.ni...
Null ppi.RNU12-2P View Gene Set 0.001303 18 0.04848 58 Protein-protein-interaction for RNU12-2P www.ncbi.nlm.ni...
Null ppi.RNU11 View Gene Set 0.001303 18 0.04848 58 Protein-protein-interaction for RNU11 www.ncbi.nlm.ni...
Null ppi.MRE11A View Gene Set 0.001243 13 0.04848 58 Protein-protein-interaction for MRE11A www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.NDRG1 View Gene Set 5.891e-06 58 0.006993 1 Protein-protein-interaction for NDRG1 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 3.623e-06 92 0.006993 1 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 3.412e-05 49 0.01672 3 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.RACGAP1 View Gene Set 3.673e-05 15 0.01672 3 Protein-protein-interaction for RACGAP1 www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 2.192e-05 58 0.01672 3 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 4.226e-05 166 0.01672 3 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.LILRB1 View Gene Set 6.177e-05 7 0.02095 7 Protein-protein-interaction for LILRB1 www.ncbi.nlm.ni...
Null ppi.MIS12 View Gene Set 8.592e-05 8 0.0255 8 Protein-protein-interaction for MIS12 www.ncbi.nlm.ni...
Null ppi.MNAT1 View Gene Set 0.0001612 9 0.04251 9 Protein-protein-interaction for MNAT1 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 8.332e-11 251 2.994e-07 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 7.794e-09 101 1.401e-05 2 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.792e-08 147 2.147e-05 3 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 9.843e-07 42 0.0008844 4 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 1.308e-06 104 0.0009404 5 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 2.905e-06 44 0.00174 6 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.NDRG1 View Gene Set 5.891e-06 58 0.003025 7 Protein-protein-interaction for NDRG1 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 8.098e-06 100 0.003638 8 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.076e-05 220 0.004296 9 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.RACGAP1 View Gene Set 1.221e-05 17 0.004389 10 Protein-protein-interaction for RACGAP1 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 2.004e-05 50 0.006003 11 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 1.958e-05 28 0.006003 11 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 2.322e-05 42 0.00642 13 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.RBL2 View Gene Set 3.299e-05 30 0.008192 14 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.MIS12 View Gene Set 3.419e-05 9 0.008192 14 Protein-protein-interaction for MIS12 www.ncbi.nlm.ni...
Null ppi.MED26 View Gene Set 4.149e-05 23 0.00932 16 Protein-protein-interaction for MED26 www.ncbi.nlm.ni...
Null ppi.GIYD2 View Gene Set 4.699e-05 32 0.009935 17 Protein-protein-interaction for GIYD2 www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 8.729e-05 35 0.01743 18 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0001069 56 0.02022 19 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.0001216 19 0.02185 20 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.MNAT1 View Gene Set 0.0001315 10 0.02251 21 Protein-protein-interaction for MNAT1 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.0001521 55 0.02377 22 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.DDA1 View Gene Set 0.0001458 44 0.02377 22 Protein-protein-interaction for DDA1 www.ncbi.nlm.ni...
Null ppi.FEN1 View Gene Set 0.0001628 11 0.02438 24 Protein-protein-interaction for FEN1 www.ncbi.nlm.ni...
Null ppi.HDAC2 View Gene Set 0.0001972 36 0.02534 25 Protein-protein-interaction for HDAC2 www.ncbi.nlm.ni...
Null ppi.FZR1 View Gene Set 0.0001974 15 0.02534 25 Protein-protein-interaction for FZR1 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 0.0001927 24 0.02534 25 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.HGS View Gene Set 0.0001833 54 0.02534 25 Protein-protein-interaction for HGS www.ncbi.nlm.ni...
Null ppi.LILRB1 View Gene Set 0.0002045 8 0.02534 29 Protein-protein-interaction for LILRB1 www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 0.0002584 21 0.02814 30 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.HDAC1 View Gene Set 0.0002439 73 0.02814 30 Protein-protein-interaction for HDAC1 www.ncbi.nlm.ni...
Null ppi.MRE11A View Gene Set 0.0002562 16 0.02814 30 Protein-protein-interaction for MRE11A www.ncbi.nlm.ni...
Null ppi.BANF1 View Gene Set 0.0002446 35 0.02814 30 Protein-protein-interaction for BANF1 www.ncbi.nlm.ni...
Null ppi.TUBB View Gene Set 0.0002907 53 0.02827 34 Protein-protein-interaction for TUBB www.ncbi.nlm.ni...
Null ppi.NIPBL View Gene Set 0.000306 6 0.02827 34 Protein-protein-interaction for NIPBL www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 0.0002693 76 0.02827 34 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.UBQLN4 View Gene Set 0.0003106 122 0.02827 34 Protein-protein-interaction for UBQLN4 www.ncbi.nlm.ni...
Null ppi.UBC View Gene Set 0.0002918 293 0.02827 34 Protein-protein-interaction for UBC www.ncbi.nlm.ni...
Null ppi.SUPT3H View Gene Set 0.0002967 14 0.02827 34 Protein-protein-interaction for SUPT3H www.ncbi.nlm.ni...
Null ppi.CDC20 View Gene Set 0.0003146 5 0.02827 34 Protein-protein-interaction for CDC20 www.ncbi.nlm.ni...
Null ppi.MAD2L1BP View Gene Set 0.0003426 7 0.03003 41 Protein-protein-interaction for MAD2L1BP www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 0.0003724 41 0.03187 42 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 0.0004169 15 0.03484 43 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.PLAT View Gene Set 0.000464 17 0.03548 44 Protein-protein-interaction for PLAT www.ncbi.nlm.ni...
Null ppi.TP53BP1 View Gene Set 0.0004472 17 0.03548 44 Protein-protein-interaction for TP53BP1 www.ncbi.nlm.ni...
Null ppi.DSN1 View Gene Set 0.0004546 8 0.03548 44 Protein-protein-interaction for DSN1 www.ncbi.nlm.ni...
Null ppi.CDK1 View Gene Set 0.0004528 16 0.03548 44 Protein-protein-interaction for CDK1 www.ncbi.nlm.ni...
Null ppi.NPM1 View Gene Set 0.0004823 26 0.03611 48 Protein-protein-interaction for NPM1 www.ncbi.nlm.ni...
Null ppi.STRA13 View Gene Set 0.0005018 9 0.0368 49 Protein-protein-interaction for STRA13 www.ncbi.nlm.ni...
Null ppi.UBA5 View Gene Set 0.000518 35 0.03718 50 Protein-protein-interaction for UBA5 www.ncbi.nlm.ni...
Null ppi.AURKB View Gene Set 0.0005276 15 0.03718 50 Protein-protein-interaction for AURKB www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 0.000561 16 0.03878 52 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.RAD18 View Gene Set 0.0005762 14 0.03907 53 Protein-protein-interaction for RAD18 www.ncbi.nlm.ni...
Null ppi.NDC80 View Gene Set 0.0006552 10 0.04264 54 Protein-protein-interaction for NDC80 www.ncbi.nlm.ni...
Null ppi.CHMP2B View Gene Set 0.0006636 6 0.04264 54 Protein-protein-interaction for CHMP2B www.ncbi.nlm.ni...
Null ppi.PPP2R1B View Gene Set 0.0006763 15 0.04264 54 Protein-protein-interaction for PPP2R1B www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 0.0006699 31 0.04264 54 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.RNF11 View Gene Set 0.0007339 46 0.04524 58 Protein-protein-interaction for RNF11 www.ncbi.nlm.ni...
Null ppi.PSMA3 View Gene Set 0.0007427 12 0.04524 58 Protein-protein-interaction for PSMA3 www.ncbi.nlm.ni...
Null ppi.ANAPC10 View Gene Set 0.0008494 11 0.04859 60 Protein-protein-interaction for ANAPC10 www.ncbi.nlm.ni...
Null ppi.UBE2C View Gene Set 0.0008654 6 0.04859 60 Protein-protein-interaction for UBE2C www.ncbi.nlm.ni...
Null ppi.E2F1 View Gene Set 0.0008521 24 0.04859 60 Protein-protein-interaction for E2F1 www.ncbi.nlm.ni...
Null ppi.GIGYF2 View Gene Set 0.0008342 19 0.04859 60 Protein-protein-interaction for GIGYF2 www.ncbi.nlm.ni...
Null ppi.AMOTL2 View Gene Set 0.0008542 7 0.04859 60 Protein-protein-interaction for AMOTL2 www.ncbi.nlm.ni...
Null ppi.MED6 View Gene Set 0.0009035 16 0.04925 65 Protein-protein-interaction for MED6 www.ncbi.nlm.ni...
Null ppi.TFE3 View Gene Set 0.0009182 15 0.04925 65 Protein-protein-interaction for TFE3 www.ncbi.nlm.ni...
Null ppi.UBE2I View Gene Set 0.0009066 88 0.04925 65 Protein-protein-interaction for UBE2I www.ncbi.nlm.ni...
Null ppi.SMURF1 View Gene Set 0.000933 76 0.04931 68 Protein-protein-interaction for SMURF1 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null AndrogenReceptor View Gene Set 0.0003187 78 0.003187 1 CELL_MAP - AndrogenReceptor gene set www.pathwaycomm...
Null TNF alpha/NF-kB View Gene Set 0.0007071 170 0.003536 2 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Polo-like kinase signaling events in the cell cycle View Gene Set 1.131e-09 109 2.103e-07 1 NCI_NATURE - Polo-like kinase signaling events in the cell cycle gene set www.pathwaycomm...
Null PLK1 signaling events View Gene Set 1.658e-08 104 1.542e-06 2 NCI_NATURE - PLK1 signaling events gene set www.pathwaycomm...
Null Aurora B signaling View Gene Set 2.834e-08 41 1.757e-06 3 NCI_NATURE - Aurora B signaling gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 8.456e-08 875 3.932e-06 4 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null Signaling by Aurora kinases View Gene Set 9.925e-07 98 3.692e-05 5 NCI_NATURE - Signaling by Aurora kinases gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 1.621e-06 937 5.026e-05 6 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 3.702e-06 677 6.259e-05 7 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 3.231e-06 796 6.259e-05 7 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 3.377e-06 686 6.259e-05 7 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null p53 pathway View Gene Set 3.382e-06 190 6.259e-05 7 NCI_NATURE - p53 pathway gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 2.387e-06 688 6.259e-05 7 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt View Gene Set 5.441e-06 532 7.477e-05 12 NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set www.pathwaycomm...
Null Signaling events mediated by focal adhesion kinase View Gene Set 5.407e-06 660 7.477e-05 12 NCI_NATURE - Signaling events mediated by focal adhesion kinase gene set www.pathwaycomm...
Null Class I PI3K signaling events View Gene Set 5.628e-06 632 7.477e-05 12 NCI_NATURE - Class I PI3K signaling events gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 9.301e-06 812 8.812e-05 15 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null FOXM1 transcription factor network View Gene Set 9.475e-06 42 8.812e-05 15 NCI_NATURE - FOXM1 transcription factor network gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 9.301e-06 812 8.812e-05 15 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 9.301e-06 812 8.812e-05 15 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null C-MYC pathway View Gene Set 8.01e-06 149 8.812e-05 15 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 8.291e-06 841 8.812e-05 15 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null Direct p53 effectors View Gene Set 1.906e-05 139 0.0001689 21 NCI_NATURE - Direct p53 effectors gene set www.pathwaycomm...
Null Signaling events mediated by PRL View Gene Set 2.517e-05 23 0.0002128 22 NCI_NATURE - Signaling events mediated by PRL gene set www.pathwaycomm...
Null E2F transcription factor network View Gene Set 3.343e-05 73 0.0002703 23 NCI_NATURE - E2F transcription factor network gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional activation View Gene Set 0.0001254 80 0.0009716 24 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.0004157 29 0.003093 25 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...
Null Syndecan-4-mediated signaling events View Gene Set 0.0007611 212 0.005445 26 NCI_NATURE - Syndecan-4-mediated signaling events gene set www.pathwaycomm...
Null Regulation of retinoblastoma protein View Gene Set 0.0007929 66 0.005462 27 NCI_NATURE - Regulation of retinoblastoma protein gene set www.pathwaycomm...
Null Androgen-mediated signaling View Gene Set 0.002111 130 0.01402 28 NCI_NATURE - Androgen-mediated signaling gene set www.pathwaycomm...
Null Angiopoietin receptor Tie2-mediated signaling View Gene Set 0.002907 50 0.01865 29 NCI_NATURE - Angiopoietin receptor Tie2-mediated signaling gene set www.pathwaycomm...
Null Aurora A signaling View Gene Set 0.003033 64 0.01881 30 NCI_NATURE - Aurora A signaling gene set www.pathwaycomm...
Null Canonical Wnt signaling pathway View Gene Set 0.003761 156 0.02257 31 NCI_NATURE - Canonical Wnt signaling pathway gene set www.pathwaycomm...
Null PLK3 signaling events View Gene Set 0.004069 5 0.02365 32 NCI_NATURE - PLK3 signaling events gene set www.pathwaycomm...
Null Regulation of Androgen receptor activity View Gene Set 0.004564 108 0.02504 33 NCI_NATURE - Regulation of Androgen receptor activity gene set www.pathwaycomm...
Null a6b1 and a6b4 Integrin signaling View Gene Set 0.004577 44 0.02504 33 NCI_NATURE - a6b1 and a6b4 Integrin signaling gene set www.pathwaycomm...
Null LKB1 signaling events View Gene Set 0.006437 372 0.03421 35 NCI_NATURE - LKB1 signaling events gene set www.pathwaycomm...
Null Noncanonical Wnt signaling pathway View Gene Set 0.00741 185 0.03828 36 NCI_NATURE - Noncanonical Wnt signaling pathway gene set www.pathwaycomm...
Null Regulation of Telomerase View Gene Set 0.008764 68 0.04375 37 NCI_NATURE - Regulation of Telomerase gene set www.pathwaycomm...
Null EGFR-dependent Endothelin signaling events View Gene Set 0.008939 345 0.04375 37 NCI_NATURE - EGFR-dependent Endothelin signaling events gene set www.pathwaycomm...
Null IFN-gamma pathway View Gene Set 0.009343 590 0.04456 39 NCI_NATURE - IFN-gamma pathway gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional repression View Gene Set 0.009734 64 0.04526 40 NCI_NATURE - Validated targets of C-MYC transcriptional repression gene set www.pathwaycomm...
Null mTOR signaling pathway View Gene Set 0.01038 343 0.04709 41 NCI_NATURE - mTOR signaling pathway gene set www.pathwaycomm...
Null Regulation of Wnt-mediated beta catenin signaling and target gene transcription View Gene Set 0.01094 135 0.04846 42 NCI_NATURE - Regulation of Wnt-mediated beta catenin signaling and target gene transcription gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Cell Cycle Mitotic View Gene Set 5.121e-32 312 5.72e-29 1 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null DNA Replication View Gene Set 2.855e-21 200 1.595e-18 2 REACTOME - DNA Replication gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 7.956e-20 180 2.962e-17 3 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null Gene Expression View Gene Set 6.852e-16 381 1.913e-13 4 REACTOME - Gene Expression gene set www.pathwaycomm...
Null M Phase View Gene Set 1.025e-14 90 2.289e-12 5 REACTOME - M Phase gene set www.pathwaycomm...
Null Mitotic Prometaphase View Gene Set 1.995e-13 86 3.715e-11 6 REACTOME - Mitotic Prometaphase gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 7.89e-13 113 1.259e-10 7 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 3.022e-12 104 4.219e-10 8 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null Influenza Infection View Gene Set 5.288e-12 143 6.563e-10 9 REACTOME - Influenza Infection gene set www.pathwaycomm...
Null Influenza Life Cycle View Gene Set 1.549e-11 138 1.73e-09 10 REACTOME - Influenza Life Cycle gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 2.789e-11 98 2.832e-09 11 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 8.738e-11 96 8.134e-09 12 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null Cell Cycle Checkpoints View Gene Set 5.801e-10 124 4.675e-08 13 REACTOME - Cell Cycle Checkpoints gene set www.pathwaycomm...
Null Translation View Gene Set 5.86e-10 120 4.675e-08 13 REACTOME - Translation gene set www.pathwaycomm...
Null Influenza Viral RNA Transcription and Replication View Gene Set 7.433e-10 101 5.535e-08 15 REACTOME - Influenza Viral RNA Transcription and Replication gene set www.pathwaycomm...
Null S Phase View Gene Set 1.437e-09 113 1.003e-07 16 REACTOME - S Phase gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 2.026e-09 158 1.331e-07 17 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 4.005e-09 138 2.485e-07 18 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null Metabolism of proteins View Gene Set 6.414e-09 263 3.771e-07 19 REACTOME - Metabolism of proteins gene set www.pathwaycomm...
Null Cap-dependent Translation Initiation View Gene Set 7.571e-09 113 4.027e-07 20 REACTOME - Cap-dependent Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Initiation View Gene Set 7.571e-09 113 4.027e-07 20 REACTOME - Eukaryotic Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Elongation View Gene Set 1.471e-08 88 7.471e-07 22 REACTOME - Eukaryotic Translation Elongation gene set www.pathwaycomm...
Null Regulation of mitotic cell cycle View Gene Set 1.634e-08 95 7.605e-07 23 REACTOME - Regulation of mitotic cell cycle gene set www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins View Gene Set 1.634e-08 95 7.605e-07 23 REACTOME - APC/C-mediated degradation of cell cycle proteins gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 1.88e-08 185 8.401e-07 25 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null HIV Infection View Gene Set 1.982e-08 194 8.444e-07 26 REACTOME - HIV Infection gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 2.041e-08 174 8.444e-07 26 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit View Gene Set 2.132e-08 106 8.504e-07 28 REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set www.pathwaycomm...
Null Peptide chain elongation View Gene Set 2.239e-08 85 8.626e-07 29 REACTOME - Peptide chain elongation gene set www.pathwaycomm...
Null Eukaryotic Translation Termination View Gene Set 3.067e-08 85 1.105e-06 30 REACTOME - Eukaryotic Translation Termination gene set www.pathwaycomm...
Null Viral mRNA Translation View Gene Set 3.004e-08 85 1.105e-06 30 REACTOME - Viral mRNA Translation gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 4.553e-08 102 1.589e-06 32 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null Insulin Synthesis and Processing View Gene Set 4.716e-08 132 1.596e-06 33 REACTOME - Insulin Synthesis and Processing gene set www.pathwaycomm...
Null mRNA Splicing - Major Pathway View Gene Set 6.131e-08 107 1.957e-06 34 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 6.131e-08 107 1.957e-06 34 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null 3' -UTR-mediated translational regulation View Gene Set 6.601e-08 105 1.993e-06 36 REACTOME - 3' -UTR-mediated translational regulation gene set www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression View Gene Set 6.601e-08 105 1.993e-06 36 REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 7.239e-08 73 2.073e-06 38 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 7.239e-08 72 2.073e-06 38 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...
Null Formation of a pool of free 40S subunits View Gene Set 7.644e-08 95 2.135e-06 40 REACTOME - Formation of a pool of free 40S subunits gene set www.pathwaycomm...
Null DNA Replication Pre-Initiation View Gene Set 1.328e-07 90 3.464e-06 41 REACTOME - DNA Replication Pre-Initiation gene set www.pathwaycomm...
Null M/G1 Transition View Gene Set 1.328e-07 90 3.464e-06 41 REACTOME - M/G1 Transition gene set www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 1.334e-07 86 3.464e-06 41 REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 View Gene Set 1.927e-07 77 4.893e-06 44 REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 2.874e-07 77 7.134e-06 45 REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Cyclin E associated events during G1/S transition View Gene Set 3.688e-07 64 8.956e-06 46 REACTOME - Cyclin E associated events during G1/S transition gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 4.012e-07 69 9.511e-06 47 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null Synthesis Secretion and Deacylation of Ghrelin View Gene Set 4.087e-07 109 9.511e-06 47 REACTOME - Synthesis Secretion and Deacylation of Ghrelin gene set www.pathwaycomm... Secretion... and Deacylation...
Null DNA Repair View Gene Set 5.547e-07 108 1.265e-05 49 REACTOME - DNA Repair gene set www.pathwaycomm...
Null Regulation of DNA replication View Gene Set 7.06e-07 81 1.577e-05 50 REACTOME - Regulation of DNA replication gene set www.pathwaycomm...
Null Synthesis Secretion and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) View Gene Set 8.449e-07 107 1.851e-05 51 REACTOME - Synthesis Secretion and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) gene set www.pathwaycomm... Secretion... and Inactivatio...
Null Host Interactions of HIV factors View Gene Set 9.454e-07 132 2.017e-05 52 REACTOME - Host Interactions of HIV factors gene set www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A View Gene Set 9.571e-07 75 2.017e-05 52 REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C View Gene Set 1.057e-06 67 2.187e-05 54 REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry View Gene Set 1.086e-06 62 2.206e-05 55 REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase View Gene Set 1.237e-06 88 2.467e-05 56 REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set www.pathwaycomm...
Null Removal of licensing factors from origins View Gene Set 2.631e-06 78 5.156e-05 57 REACTOME - Removal of licensing factors from origins gene set www.pathwaycomm...
Null Cyclin A/B1 associated events during G2/M transition View Gene Set 2.826e-06 19 5.443e-05 58 REACTOME - Cyclin A/B1 associated events during G2/M transition gene set www.pathwaycomm...
Null Loss of proteins required for interphase microtubule organization from the centrosome View Gene Set 3.16e-06 62 5.882e-05 59 REACTOME - Loss of proteins required for interphase microtubule organization from the centrosome gene set www.pathwaycomm...
Null Loss of Nlp from mitotic centrosomes View Gene Set 3.16e-06 62 5.882e-05 59 REACTOME - Loss of Nlp from mitotic centrosomes gene set www.pathwaycomm...
Null Synthesis Secretion and Inactivation of Glucagon-like Peptide-1 (GLP-1) View Gene Set 3.663e-06 112 6.707e-05 61 REACTOME - Synthesis Secretion and Inactivation of Glucagon-like Peptide-1 (GLP-1) gene set www.pathwaycomm... Secretion... and Inactivatio...
Null APC/C:Cdc20 mediated degradation of Securin View Gene Set 4.282e-06 72 7.677e-05 62 REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set www.pathwaycomm...
Null E2F mediated regulation of DNA replication View Gene Set 4.33e-06 28 7.677e-05 62 REACTOME - E2F mediated regulation of DNA replication gene set www.pathwaycomm...
Null Switching of origins to a post-replicative state View Gene Set 5.469e-06 76 9.398e-05 64 REACTOME - Switching of origins to a post-replicative state gene set www.pathwaycomm...
Null Orc1 removal from chromatin View Gene Set 5.469e-06 76 9.398e-05 64 REACTOME - Orc1 removal from chromatin gene set www.pathwaycomm...
Null Assembly of the pre-replicative complex View Gene Set 7.481e-06 75 0.0001266 66 REACTOME - Assembly of the pre-replicative complex gene set www.pathwaycomm...
Null Incretin Synthesis Secretion and Inactivation View Gene Set 7.821e-06 115 0.0001304 67 REACTOME - Incretin Synthesis Secretion and Inactivation gene set www.pathwaycomm... Secretion... and Inactivatio...
Null Regulation of gene expression in beta cells View Gene Set 1.061e-05 100 0.0001742 68 REACTOME - Regulation of gene expression in beta cells gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 1.889e-05 55 0.0003058 69 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null Diabetes pathways View Gene Set 2.159e-05 320 0.0003445 70 REACTOME - Diabetes pathways gene set www.pathwaycomm...
Null SCF(Skp2)-mediated degradation of p27/p21 View Gene Set 2.426e-05 52 0.0003817 71 REACTOME - SCF(Skp2)-mediated degradation of p27/p21 gene set www.pathwaycomm...
Null G1/S-Specific Transcription View Gene Set 3.497e-05 16 0.0005425 72 REACTOME - G1/S-Specific Transcription gene set www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex View Gene Set 4.214e-05 66 0.0006386 73 REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set www.pathwaycomm...
Null Metabolism of mRNA View Gene Set 4.23e-05 125 0.0006386 73 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Nucleotide Excision Repair View Gene Set 4.61e-05 51 0.0006865 75 REACTOME - Nucleotide Excision Repair gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 4.884e-05 103 0.0007178 76 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 5.232e-05 51 0.0007398 77 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null Cyclin D associated events in G1 View Gene Set 5.227e-05 19 0.0007398 77 REACTOME - Cyclin D associated events in G1 gene set www.pathwaycomm...
Null G1 Phase View Gene Set 5.227e-05 19 0.0007398 77 REACTOME - G1 Phase gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1 View Gene Set 7.003e-05 59 0.0009657 80 REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D View Gene Set 7.003e-05 59 0.0009657 80 REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set www.pathwaycomm...
Null Endosomal Sorting Complex Required For Transport (ESCRT) View Gene Set 7.171e-05 28 0.0009768 82 REACTOME - Endosomal Sorting Complex Required For Transport (ESCRT) gene set www.pathwaycomm...
Null snRNP Assembly View Gene Set 7.426e-05 50 0.0009874 83 REACTOME - snRNP Assembly gene set www.pathwaycomm...
Null Metabolism of non-coding RNA View Gene Set 7.426e-05 50 0.0009874 83 REACTOME - Metabolism of non-coding RNA gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 8.007e-05 43 0.00104 85 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null Transcription-coupled NER (TC-NER) View Gene Set 7.999e-05 45 0.00104 85 REACTOME - Transcription-coupled NER (TC-NER) gene set www.pathwaycomm...
Null Kinesins View Gene Set 8.211e-05 22 0.001053 87 REACTOME - Kinesins gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 8.293e-05 37 0.001053 87 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null Regulation of beta-cell development View Gene Set 9.525e-05 110 0.001182 89 REACTOME - Regulation of beta-cell development gene set www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements View Gene Set 9.436e-05 95 0.001182 89 REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set www.pathwaycomm...
Null G1/S DNA Damage Checkpoints View Gene Set 0.0001137 68 0.001395 91 REACTOME - G1/S DNA Damage Checkpoints gene set www.pathwaycomm...
Null APC-Cdc20 mediated degradation of Nek2A View Gene Set 0.000148 23 0.001797 92 REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA View Gene Set 0.0001546 34 0.001837 93 REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set www.pathwaycomm...
Null mRNA 3'-end processing View Gene Set 0.0001546 34 0.001837 93 REACTOME - mRNA 3'-end processing gene set www.pathwaycomm...
Null RNA Polymerase II Transcription View Gene Set 0.0001667 101 0.00196 95 REACTOME - RNA Polymerase II Transcription gene set www.pathwaycomm...
Null Regulation of Insulin Secretion View Gene Set 0.000174 141 0.002025 96 REACTOME - Regulation of Insulin Secretion gene set www.pathwaycomm...
Null CDK-mediated phosphorylation and removal of Cdc6 View Gene Set 0.0002002 58 0.002305 97 REACTOME - CDK-mediated phosphorylation and removal of Cdc6 gene set www.pathwaycomm...
Null Late Phase of HIV Life Cycle View Gene Set 0.0002089 92 0.002381 98 REACTOME - Late Phase of HIV Life Cycle gene set www.pathwaycomm...
Null mRNA Capping View Gene Set 0.0002253 29 0.002426 99 REACTOME - mRNA Capping gene set www.pathwaycomm...
Null Regulation of activated PAK-2p34 by proteasome mediated degradation View Gene Set 0.0002188 57 0.002426 99 REACTOME - Regulation of activated PAK-2p34 by proteasome mediated degradation gene set www.pathwaycomm...
Null Vif-mediated degradation of APOBEC3G View Gene Set 0.0002252 61 0.002426 99 REACTOME - Vif-mediated degradation of APOBEC3G gene set www.pathwaycomm...
Null p53-Dependent G1/S DNA damage checkpoint View Gene Set 0.0002252 64 0.002426 99 REACTOME - p53-Dependent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Dependent G1 DNA Damage Response View Gene Set 0.0002252 64 0.002426 99 REACTOME - p53-Dependent G1 DNA Damage Response gene set www.pathwaycomm...
Null Apoptosis View Gene Set 0.0002259 148 0.002426 99 REACTOME - Apoptosis gene set www.pathwaycomm...
Null Degradation of beta-catenin by the destruction complex View Gene Set 0.0002511 56 0.002646 105 REACTOME - Degradation of beta-catenin by the destruction complex gene set www.pathwaycomm...
Null Signaling by Wnt View Gene Set 0.0002511 56 0.002646 105 REACTOME - Signaling by Wnt gene set www.pathwaycomm...
Null Regulation of ornithine decarboxylase (ODC) View Gene Set 0.000262 62 0.002728 107 REACTOME - Regulation of ornithine decarboxylase (ODC) gene set www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint View Gene Set 0.0002662 62 0.002728 107 REACTOME - p53-Independent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Independent DNA Damage Response View Gene Set 0.0002662 62 0.002728 107 REACTOME - p53-Independent DNA Damage Response gene set www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1 View Gene Set 0.000281 60 0.002854 110 REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Cyclin B View Gene Set 0.0002874 22 0.002892 111 REACTOME - APC/C:Cdc20 mediated degradation of Cyclin B gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 0.000304 35 0.003032 112 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null Autodegradation of the E3 ubiquitin ligase COP1 View Gene Set 0.0003166 60 0.00313 113 REACTOME - Autodegradation of the E3 ubiquitin ligase COP1 gene set www.pathwaycomm...
Null Vpu mediated degradation of CD4 View Gene Set 0.0003286 57 0.00322 114 REACTOME - Vpu mediated degradation of CD4 gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 0.0003438 28 0.003338 115 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 0.0003466 30 0.003338 115 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null Ribosomal scanning and start codon recognition View Gene Set 0.0003901 56 0.003713 117 REACTOME - Ribosomal scanning and start codon recognition gene set www.pathwaycomm...
Null Pyrimidine biosynthesis View Gene Set 0.0003922 6 0.003713 117 REACTOME - Pyrimidine biosynthesis gene set www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0) View Gene Set 0.0004225 63 0.003966 119 REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set www.pathwaycomm...
Null Post-Elongation Processing of the Transcript View Gene Set 0.0004605 43 0.004216 120 REACTOME - Post-Elongation Processing of the Transcript gene set www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region View Gene Set 0.0004605 43 0.004216 120 REACTOME - Cleavage of Growing Transcript in the Termination Region gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Termination View Gene Set 0.0004605 43 0.004216 120 REACTOME - RNA Polymerase II Transcription Termination gene set www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A View Gene Set 0.0004849 61 0.004368 123 REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set www.pathwaycomm...
Null Stabilization of p53 View Gene Set 0.0004845 61 0.004368 123 REACTOME - Stabilization of p53 gene set www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts View Gene Set 0.0004952 36 0.004426 125 REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set www.pathwaycomm...
Null Formation of ATP by chemiosmotic coupling View Gene Set 0.0005007 15 0.004439 126 REACTOME - Formation of ATP by chemiosmotic coupling gene set www.pathwaycomm...
Null Integration of energy metabolism View Gene Set 0.0005084 176 0.004472 127 REACTOME - Integration of energy metabolism gene set www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere View Gene Set 0.0005619 35 0.004866 128 REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set www.pathwaycomm...
Null Nucleosome assembly View Gene Set 0.0005619 35 0.004866 128 REACTOME - Nucleosome assembly gene set www.pathwaycomm...
Null Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S View Gene Set 0.0005982 57 0.00514 130 REACTOME - Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S gene set www.pathwaycomm... and subsequent ...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components View Gene Set 0.0006197 18 0.005244 131 REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex View Gene Set 0.0006197 18 0.005244 131 REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set www.pathwaycomm...
Null Translation initiation complex formation View Gene Set 0.0006352 56 0.005335 133 REACTOME - Translation initiation complex formation gene set www.pathwaycomm...
Null mRNA Splicing - Minor Pathway View Gene Set 0.0006958 42 0.0058 134 REACTOME - mRNA Splicing - Minor Pathway gene set www.pathwaycomm...
Null Formation of the HIV-1 Early Elongation Complex View Gene Set 0.000708 32 0.005815 135 REACTOME - Formation of the HIV-1 Early Elongation Complex gene set www.pathwaycomm...
Null Formation of the Early Elongation Complex View Gene Set 0.000708 32 0.005815 135 REACTOME - Formation of the Early Elongation Complex gene set www.pathwaycomm...
Null Interactions of Rev with host cellular proteins View Gene Set 0.0007246 33 0.005865 137 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null Phosphorylation of the APC/C View Gene Set 0.0007211 26 0.005865 137 REACTOME - Phosphorylation of the APC/C gene set www.pathwaycomm...
Null Transcription View Gene Set 0.0007491 178 0.00602 139 REACTOME - Transcription gene set www.pathwaycomm...
Null Metabolism of carbohydrates View Gene Set 0.0008186 93 0.006531 140 REACTOME - Metabolism of carbohydrates gene set www.pathwaycomm...
Null Signaling by EGFR View Gene Set 0.0009145 51 0.007245 141 REACTOME - Signaling by EGFR gene set www.pathwaycomm...
Null Mitotic Spindle Checkpoint View Gene Set 0.0009464 19 0.007444 142 REACTOME - Mitotic Spindle Checkpoint gene set www.pathwaycomm...
Null Nuclear import of Rev protein View Gene Set 0.0009617 30 0.007512 143 REACTOME - Nuclear import of Rev protein gene set www.pathwaycomm...
Null RNA Pol II CTD phosphorylation and interaction with CE View Gene Set 0.0009916 27 0.007638 144 REACTOME - RNA Pol II CTD phosphorylation and interaction with CE gene set www.pathwaycomm...
Null RNA Pol II CTD phosphorylation and interaction with CE - 11 View Gene Set 0.0009916 27 0.007638 144 REACTOME - RNA Pol II CTD phosphorylation and interaction with CE - 11 gene set www.pathwaycomm...
Null Regulation of Apoptosis View Gene Set 0.001007 66 0.007649 146 REACTOME - Regulation of Apoptosis gene set www.pathwaycomm...
Null Formation of the ternary complex and subsequently the 43S complex View Gene Set 0.001002 49 0.007649 146 REACTOME - Formation of the ternary complex and subsequently the 43S complex gene set www.pathwaycomm... and subsequentl... the 43S complex...
Null Interactions of Vpr with host cellular proteins View Gene Set 0.001226 34 0.009257 148 REACTOME - Interactions of Vpr with host cellular proteins gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 0.001406 32 0.0104 149 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 0.001405 32 0.0104 149 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 0.001396 31 0.0104 149 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null Global Genomic NER (GG-NER) View Gene Set 0.001586 35 0.01166 152 REACTOME - Global Genomic NER (GG-NER) gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 0.001622 29 0.01184 153 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null Recruitment of NuMA to mitotic centrosomes View Gene Set 0.001839 14 0.01334 154 REACTOME - Recruitment of NuMA to mitotic centrosomes gene set www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis View Gene Set 0.001987 22 0.01432 155 REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set www.pathwaycomm...
Null Fanconi Anemia pathway View Gene Set 0.002044 22 0.01463 156 REACTOME - Fanconi Anemia pathway gene set www.pathwaycomm...
Null Formation of transcription-coupled NER (TC-NER) repair complex View Gene Set 0.002118 29 0.01498 157 REACTOME - Formation of transcription-coupled NER (TC-NER) repair complex gene set www.pathwaycomm...
Null Dual incision reaction in TC-NER View Gene Set 0.002118 29 0.01498 157 REACTOME - Dual incision reaction in TC-NER gene set www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA View Gene Set 0.002179 33 0.01531 159 REACTOME - Transport of the SLBP Dependant Mature mRNA gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex containing HIV-1 Tat View Gene Set 0.002244 41 0.0154 160 REACTOME - Formation of HIV-1 elongation complex containing HIV-1 Tat gene set www.pathwaycomm...
Null Tat-mediated elongation of the HIV-1 transcript View Gene Set 0.002244 41 0.0154 160 REACTOME - Tat-mediated elongation of the HIV-1 transcript gene set www.pathwaycomm...
Null HIV-1 Transcription Elongation View Gene Set 0.002244 41 0.0154 160 REACTOME - HIV-1 Transcription Elongation gene set www.pathwaycomm...
Null NEP/NS2 Interacts with the Cellular Export Machinery View Gene Set 0.002247 29 0.0154 160 REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set www.pathwaycomm...
Null Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase View Gene Set 0.002524 16 0.01719 164 REACTOME - Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase gene set www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs View Gene Set 0.002818 31 0.01908 165 REACTOME - Vpr-mediated nuclear import of PICs gene set www.pathwaycomm...
Null Mitochondrial tRNA aminoacylation View Gene Set 0.003069 21 0.02065 166 REACTOME - Mitochondrial tRNA aminoacylation gene set www.pathwaycomm...
Null MAP kinase cascade View Gene Set 0.003169 11 0.02119 167 REACTOME - MAP kinase cascade gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex in the absence of HIV-1 Tat View Gene Set 0.003262 42 0.02143 168 REACTOME - Formation of HIV-1 elongation complex in the absence of HIV-1 Tat gene set www.pathwaycomm...
Null Formation of RNA Pol II elongation complex View Gene Set 0.003262 42 0.02143 168 REACTOME - Formation of RNA Pol II elongation complex gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Elongation View Gene Set 0.003262 42 0.02143 168 REACTOME - RNA Polymerase II Transcription Elongation gene set www.pathwaycomm...
Null Platelet degranulation View Gene Set 0.004151 32 0.02712 171 REACTOME - Platelet degranulation gene set www.pathwaycomm...
Null RAF activation View Gene Set 0.004185 5 0.02718 172 REACTOME - RAF activation gene set www.pathwaycomm...
Null Interferon gamma signaling View Gene Set 0.004657 48 0.03002 173 REACTOME - Interferon gamma signaling gene set www.pathwaycomm...
Null Phosphorylation of proteins involved in the G2/M transition by Cyclin A:Cdc2 complexes View Gene Set 0.004676 3 0.03002 173 REACTOME - Phosphorylation of proteins involved in the G2/M transition by Cyclin A:Cdc2 complexes gene set www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus View Gene Set 0.004934 29 0.03079 175 REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set www.pathwaycomm...
Null Activation of BH3-only proteins View Gene Set 0.004837 17 0.03079 175 REACTOME - Activation of BH3-only proteins gene set www.pathwaycomm...
Null Cyclin B2 mediated events View Gene Set 0.004878 5 0.03079 175 REACTOME - Cyclin B2 mediated events gene set www.pathwaycomm...
Null MEK activation View Gene Set 0.00493 7 0.03079 175 REACTOME - MEK activation gene set www.pathwaycomm...
Null RAF phosphorylates MEK View Gene Set 0.00493 7 0.03079 175 REACTOME - RAF phosphorylates MEK gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 0.005011 49 0.0311 180 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus View Gene Set 0.005288 31 0.03263 181 REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set www.pathwaycomm...
Null Abortive elongation of HIV-1 transcript in the absence of Tat View Gene Set 0.005856 22 0.03594 182 REACTOME - Abortive elongation of HIV-1 transcript in the absence of Tat gene set www.pathwaycomm...
Null Membrane Trafficking View Gene Set 0.006091 84 0.03698 183 REACTOME - Membrane Trafficking gene set www.pathwaycomm...
Null Lysine catabolism View Gene Set 0.006079 8 0.03698 183 REACTOME - Lysine catabolism gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER View Gene Set 0.006644 16 0.03969 185 REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER View Gene Set 0.006644 16 0.03969 185 REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set www.pathwaycomm...
Null Signalling to RAS View Gene Set 0.006619 22 0.03969 185 REACTOME - Signalling to RAS gene set www.pathwaycomm...
Null Cell-extracellular matrix interactions View Gene Set 0.00704 16 0.04183 188 REACTOME - Cell-extracellular matrix interactions gene set www.pathwaycomm...
Null Activation of NOXA and translocation to mitochondria View Gene Set 0.007189 4 0.04249 189 REACTOME - Activation of NOXA and translocation to mitochondria gene set www.pathwaycomm...
Null tRNA Aminoacylation View Gene Set 0.00788 42 0.04633 190 REACTOME - tRNA Aminoacylation gene set www.pathwaycomm...
Null Lagging Strand Synthesis View Gene Set 0.007975 20 0.04664 191 REACTOME - Lagging Strand Synthesis gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Termination View Gene Set 0.008188 22 0.04764 192 REACTOME - RNA Polymerase I Transcription Termination gene set www.pathwaycomm...
Null Processive synthesis on the lagging strand View Gene Set 0.008387 15 0.04854 193 REACTOME - Processive synthesis on the lagging strand gene set www.pathwaycomm...
Null EGFR downregulation View Gene Set 0.008651 27 0.04972 194 REACTOME - EGFR downregulation gene set www.pathwaycomm...
Null SHC-mediated signalling View Gene Set 0.008725 13 0.04972 194 REACTOME - SHC-mediated signalling gene set www.pathwaycomm...
Null Frs2-mediated activation View Gene Set 0.008697 19 0.04972 194 REACTOME - Frs2-mediated activation gene set www.pathwaycomm...
Null Metabolism of porphyrins View Gene Set 0.008807 11 0.04993 197 REACTOME - Metabolism of porphyrins gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548d-3p View Gene Set 6.854e-11 2210 4.64e-08 1 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 3.452e-09 3130 1.169e-06 2 microRNA targets for hsa-miR-548c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 4.638e-08 2925 1.047e-05 3 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 1.207e-07 1858 2.043e-05 4 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 3.204e-07 3175 4.338e-05 5 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 4.194e-07 2711 4.376e-05 6 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 4.524e-07 2909 4.376e-05 6 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 1.487e-06 2324 0.0001118 8 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 1.475e-06 2900 0.0001118 8 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 2.076e-06 1644 0.000119 10 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 2.625e-06 2173 0.000119 10 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 2.416e-06 2008 0.000119 10 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 2.625e-06 2173 0.000119 10 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 1.86e-06 3270 0.000119 10 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 2.636e-06 3575 0.000119 10 microRNA targets for hsa-miR-590-3p from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 2.898e-06 1794 0.0001226 16 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 3.26e-06 2539 0.0001298 17 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 3.894e-06 1022 0.0001464 18 microRNA targets for hsa-miR-891b from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 5.787e-06 1921 0.0002015 19 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 5.954e-06 1919 0.0002015 19 microRNA targets for hsa-miR-452 from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 6.377e-06 2652 0.0002056 21 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 7.038e-06 1789 0.0002166 22 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-1305 View Gene Set 1.019e-05 1619 0.0003 23 microRNA targets for hsa-miR-1305 from miranda.targets www.mirbase.org...
Null hsa-miR-548n View Gene Set 1.614e-05 3830 0.0004553 24 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 1.751e-05 1644 0.000456 25 microRNA targets for hsa-miR-300 from miranda.targets www.mirbase.org...
Null hsa-miR-605 View Gene Set 1.697e-05 1295 0.000456 25 microRNA targets for hsa-miR-605 from miranda.targets www.mirbase.org...
Null hsa-miR-1283 View Gene Set 2.196e-05 1960 0.0005505 27 microRNA targets for hsa-miR-1283 from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 2.552e-05 2091 0.0006171 28 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 2.785e-05 1804 0.0006217 29 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 2.847e-05 1239 0.0006217 29 microRNA targets for hsa-miR-183 from miranda.targets www.mirbase.org...
Null hsa-miR-548l View Gene Set 2.712e-05 2599 0.0006217 29 microRNA targets for hsa-miR-548l from miranda.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 4.693e-05 2122 0.0009928 32 microRNA targets for hsa-miR-20b from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 5.154e-05 2860 0.001057 33 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-18a View Gene Set 5.49e-05 1494 0.001093 34 microRNA targets for hsa-miR-18a from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 6.25e-05 2745 0.001209 35 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 6.887e-05 1449 0.001295 36 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 7.163e-05 2056 0.001311 37 microRNA targets for hsa-miR-302d from miranda.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 8.101e-05 2046 0.001443 38 microRNA targets for hsa-miR-302c from miranda.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 9.531e-05 2140 0.001654 39 microRNA targets for hsa-miR-520g from miranda.targets www.mirbase.org...
Null hsa-miR-1197 View Gene Set 0.0001111 1210 0.001881 40 microRNA targets for hsa-miR-1197 from miranda.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 0.0001179 2322 0.001946 41 microRNA targets for hsa-miR-607 from miranda.targets www.mirbase.org...
Null hsa-miR-657 View Gene Set 0.0001306 1271 0.002057 42 microRNA targets for hsa-miR-657 from miranda.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.0001286 2077 0.002057 42 microRNA targets for hsa-miR-93 from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.0001477 2295 0.002222 44 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.0001449 2054 0.002222 44 microRNA targets for hsa-miR-302a from miranda.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.0001566 2219 0.002255 46 microRNA targets for hsa-miR-195 from miranda.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.0001546 1713 0.002255 46 microRNA targets for hsa-miR-377 from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.0001854 1859 0.002615 48 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.000191 2384 0.002639 49 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 0.0002098 703 0.002841 50 microRNA targets for hsa-miR-518c from miranda.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 0.0002257 1217 0.002996 51 microRNA targets for hsa-miR-582-3p from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.0002462 1861 0.003145 52 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 0.0002449 1886 0.003145 52 microRNA targets for hsa-miR-494 from miranda.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.0002562 2258 0.003154 54 microRNA targets for hsa-miR-16 from miranda.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.0002551 2574 0.003154 54 microRNA targets for hsa-miR-524-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548g View Gene Set 0.000276 2114 0.003337 56 microRNA targets for hsa-miR-548g from miranda.targets www.mirbase.org...
Null hsa-miR-383 View Gene Set 0.0002827 1319 0.003358 57 microRNA targets for hsa-miR-383 from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 0.0002977 1933 0.003475 58 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 0.0003232 2312 0.003708 59 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.0003383 1844 0.003818 60 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-1252 View Gene Set 0.0003445 3125 0.003824 61 microRNA targets for hsa-miR-1252 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.0003513 2212 0.003836 62 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.000384 338 0.004062 63 microRNA targets for hsa-miR-518b from miranda.targets www.mirbase.org...
Null hsa-miR-624 View Gene Set 0.0003808 1486 0.004062 63 microRNA targets for hsa-miR-624 from miranda.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.0004012 1638 0.004179 65 microRNA targets for hsa-miR-381 from miranda.targets www.mirbase.org...
Null hsa-miR-1178 View Gene Set 0.0004355 971 0.004467 66 microRNA targets for hsa-miR-1178 from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.0004638 1858 0.004486 67 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-302e View Gene Set 0.0004639 1203 0.004486 67 microRNA targets for hsa-miR-302e from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.0004523 1454 0.004486 67 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 0.0004448 1206 0.004486 67 microRNA targets for hsa-miR-590-5p from miranda.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 0.0004807 1330 0.004584 71 microRNA targets for hsa-miR-146b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.0005052 2504 0.004751 72 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 0.0005183 1040 0.004806 73 microRNA targets for hsa-miR-606 from miranda.targets www.mirbase.org...
Null hsa-miR-1278 View Gene Set 0.0005288 1219 0.004838 74 microRNA targets for hsa-miR-1278 from miranda.targets www.mirbase.org...
Null hsa-miR-34c-3p View Gene Set 0.0005573 762 0.004973 75 microRNA targets for hsa-miR-34c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-513b View Gene Set 0.0005582 1603 0.004973 75 microRNA targets for hsa-miR-513b from miranda.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.0006063 1379 0.00533 77 microRNA targets for hsa-miR-888 from miranda.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.000618 1431 0.005364 78 microRNA targets for hsa-miR-603 from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.0006866 1319 0.005884 79 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.000764 1802 0.006465 80 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.0007881 2061 0.006587 81 microRNA targets for hsa-miR-373 from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.0008162 2189 0.006708 82 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-548o View Gene Set 0.0008224 2216 0.006708 82 microRNA targets for hsa-miR-548o from miranda.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.0008353 2080 0.006732 84 microRNA targets for hsa-miR-497 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.0008978 2983 0.007151 85 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-923 View Gene Set 0.0009642 471 0.00759 86 microRNA targets for hsa-miR-923 from miranda.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.001026 2061 0.007982 87 microRNA targets for hsa-miR-520d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.001074 1019 0.008261 88 microRNA targets for hsa-miR-1297 from miranda.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 0.001104 1393 0.008399 89 microRNA targets for hsa-miR-873 from miranda.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.001175 2080 0.008647 90 microRNA targets for hsa-miR-320a from miranda.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.001175 2080 0.008647 90 microRNA targets for hsa-miR-320b from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.001172 3124 0.008647 90 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.001226 2681 0.008829 93 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-28-3p View Gene Set 0.001216 838 0.008829 93 microRNA targets for hsa-miR-28-3p from miranda.targets www.mirbase.org...
Null hsa-miR-10a View Gene Set 0.001296 859 0.009235 95 microRNA targets for hsa-miR-10a from miranda.targets www.mirbase.org...
Null hsa-miR-193b View Gene Set 0.001349 857 0.009513 96 microRNA targets for hsa-miR-193b from miranda.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.001378 1590 0.009617 97 microRNA targets for hsa-miR-520a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-520h View Gene Set 0.0014 1820 0.009673 98 microRNA targets for hsa-miR-520h from miranda.targets www.mirbase.org...
Null hsa-miR-646 View Gene Set 0.00143 1606 0.009778 99 microRNA targets for hsa-miR-646 from miranda.targets www.mirbase.org...
Null hsa-miR-7 View Gene Set 0.001445 1890 0.009783 100 microRNA targets for hsa-miR-7 from miranda.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.00148 1323 0.009823 101 microRNA targets for hsa-miR-146a from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.001472 1707 0.009823 101 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 0.00162 1229 0.01065 103 microRNA targets for hsa-miR-485-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1323 View Gene Set 0.001667 2071 0.01085 104 microRNA targets for hsa-miR-1323 from miranda.targets www.mirbase.org...
Null hsa-miR-1179 View Gene Set 0.001738 1381 0.0111 105 microRNA targets for hsa-miR-1179 from miranda.targets www.mirbase.org...
Null hsa-miR-548e View Gene Set 0.001732 2325 0.0111 105 microRNA targets for hsa-miR-548e from miranda.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 0.001803 1183 0.01141 107 microRNA targets for hsa-miR-567 from miranda.targets www.mirbase.org...
Null hsa-miR-548p View Gene Set 0.002028 2743 0.01271 108 microRNA targets for hsa-miR-548p from miranda.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.002048 1860 0.01272 109 microRNA targets for hsa-miR-320c from miranda.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.002072 1832 0.01275 110 microRNA targets for hsa-miR-372 from miranda.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 0.002252 1631 0.01363 111 microRNA targets for hsa-miR-335 from miranda.targets www.mirbase.org...
Null hsa-miR-548f View Gene Set 0.002276 2082 0.01363 111 microRNA targets for hsa-miR-548f from miranda.targets www.mirbase.org...
Null hsa-miR-630 View Gene Set 0.002262 1318 0.01363 111 microRNA targets for hsa-miR-630 from miranda.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.00232 1793 0.01367 114 microRNA targets for hsa-miR-495 from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.002322 1877 0.01367 114 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.002425 1949 0.01415 116 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 0.002563 1259 0.01483 117 microRNA targets for hsa-miR-132 from miranda.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.002669 1767 0.01531 118 microRNA targets for hsa-miR-144 from miranda.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.002695 2301 0.01533 119 microRNA targets for hsa-miR-15a from miranda.targets www.mirbase.org...
Null hsa-miR-1299 View Gene Set 0.002718 2168 0.01533 120 microRNA targets for hsa-miR-1299 from miranda.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.00275 1096 0.01538 121 microRNA targets for hsa-miR-212 from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 0.002842 2438 0.01577 122 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-552 View Gene Set 0.002925 1359 0.01597 123 microRNA targets for hsa-miR-552 from miranda.targets www.mirbase.org...
Null hsa-miR-575 View Gene Set 0.002912 958 0.01597 123 microRNA targets for hsa-miR-575 from miranda.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 0.002967 1044 0.01607 125 microRNA targets for hsa-miR-496 from miranda.targets www.mirbase.org...
Null hsa-miR-586 View Gene Set 0.003028 2421 0.01614 126 microRNA targets for hsa-miR-586 from miranda.targets www.mirbase.org...
Null hsa-miR-708 View Gene Set 0.003017 1600 0.01614 126 microRNA targets for hsa-miR-708 from miranda.targets www.mirbase.org...
Null hsa-miR-18b View Gene Set 0.003084 1494 0.01624 128 microRNA targets for hsa-miR-18b from miranda.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 0.003094 1971 0.01624 128 microRNA targets for hsa-miR-582-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.003271 1792 0.01703 130 microRNA targets for hsa-miR-30c from miranda.targets www.mirbase.org...
Null hsa-miR-216a View Gene Set 0.003337 1454 0.01711 131 microRNA targets for hsa-miR-216a from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 0.003328 2111 0.01711 131 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-513c View Gene Set 0.003408 1451 0.01735 133 microRNA targets for hsa-miR-513c from miranda.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.00361 1053 0.01824 134 microRNA targets for hsa-miR-21 from miranda.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.00375 1641 0.0188 135 microRNA targets for hsa-miR-382 from miranda.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.003876 1695 0.01888 136 microRNA targets for hsa-miR-30b from miranda.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 0.003867 2392 0.01888 136 microRNA targets for hsa-miR-424 from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 0.003822 1874 0.01888 136 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.003812 1774 0.01888 136 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.00398 1842 0.01925 140 microRNA targets for hsa-miR-520c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.004071 2253 0.01941 141 microRNA targets for hsa-miR-15b from miranda.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.004043 2017 0.01941 141 microRNA targets for hsa-miR-19b from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.004209 1511 0.01991 143 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.004235 2124 0.01991 143 microRNA targets for hsa-miR-330-3p from miranda.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.004332 1131 0.02022 145 microRNA targets for hsa-miR-219-2-3p from miranda.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.004477 2308 0.02076 146 microRNA targets for hsa-miR-539 from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.004586 1646 0.02084 147 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.004557 2072 0.02084 147 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-553 View Gene Set 0.004555 714 0.02084 147 microRNA targets for hsa-miR-553 from miranda.targets www.mirbase.org...
Null hsa-miR-516a-3p View Gene Set 0.004677 1273 0.02097 150 microRNA targets for hsa-miR-516a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 0.004658 2420 0.02097 150 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-628-5p View Gene Set 0.005077 1073 0.02261 152 microRNA targets for hsa-miR-628-5p from miranda.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.005122 1176 0.02266 153 microRNA targets for hsa-miR-455-3p from miranda.targets www.mirbase.org...
Null hsa-miR-193a-3p View Gene Set 0.005243 887 0.02305 154 microRNA targets for hsa-miR-193a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.005349 1504 0.02323 155 microRNA targets for hsa-miR-148a from miranda.targets www.mirbase.org...
Null hsa-miR-223 View Gene Set 0.005352 1344 0.02323 155 microRNA targets for hsa-miR-223 from miranda.targets www.mirbase.org...
Null hsa-miR-10b View Gene Set 0.005593 821 0.02397 157 microRNA targets for hsa-miR-10b from miranda.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 0.005582 437 0.02397 157 microRNA targets for hsa-miR-337-5p from miranda.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.005836 1416 0.02485 159 microRNA targets for hsa-miR-216b from miranda.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 0.006061 1605 0.02549 160 microRNA targets for hsa-miR-518a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-527 View Gene Set 0.006061 1605 0.02549 160 microRNA targets for hsa-miR-527 from miranda.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.006369 1719 0.02654 162 microRNA targets for hsa-miR-320d from miranda.targets www.mirbase.org...
Null hsa-miR-518f View Gene Set 0.006389 491 0.02654 162 microRNA targets for hsa-miR-518f from miranda.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 0.006481 1282 0.02675 164 microRNA targets for hsa-miR-409-3p from miranda.targets www.mirbase.org...
Null hsa-miR-639 View Gene Set 0.006713 526 0.02754 165 microRNA targets for hsa-miR-639 from miranda.targets www.mirbase.org...
Null hsa-miR-555 View Gene Set 0.006931 705 0.02827 166 microRNA targets for hsa-miR-555 from miranda.targets www.mirbase.org...
Null hsa-miR-557 View Gene Set 0.007012 1175 0.02843 167 microRNA targets for hsa-miR-557 from miranda.targets www.mirbase.org...
Null hsa-miR-1324 View Gene Set 0.007233 2051 0.02864 168 microRNA targets for hsa-miR-1324 from miranda.targets www.mirbase.org...
Null hsa-miR-140-3p View Gene Set 0.007208 1358 0.02864 168 microRNA targets for hsa-miR-140-3p from miranda.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 0.007221 1728 0.02864 168 microRNA targets for hsa-miR-520e from miranda.targets www.mirbase.org...
Null hsa-miR-548m View Gene Set 0.007224 2295 0.02864 168 microRNA targets for hsa-miR-548m from miranda.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 0.007361 1821 0.02897 172 microRNA targets for hsa-miR-515-5p from miranda.targets www.mirbase.org...
Null hsa-miR-325 View Gene Set 0.007759 855 0.03022 173 microRNA targets for hsa-miR-325 from miranda.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 0.007767 1386 0.03022 173 microRNA targets for hsa-miR-506 from miranda.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 0.008457 1792 0.03272 175 microRNA targets for hsa-miR-30e from miranda.targets www.mirbase.org...
Null hsa-miR-342-3p View Gene Set 0.008527 1057 0.0328 176 microRNA targets for hsa-miR-342-3p from miranda.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.008695 943 0.03326 177 microRNA targets for hsa-miR-935 from miranda.targets www.mirbase.org...
Null hsa-miR-331-5p View Gene Set 0.009759 815 0.03699 178 microRNA targets for hsa-miR-331-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548b-3p View Gene Set 0.009781 1349 0.03699 178 microRNA targets for hsa-miR-548b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.00994 1414 0.03739 180 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 0.01005 1101 0.03759 181 microRNA targets for hsa-miR-410 from miranda.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 0.01025 1136 0.03814 182 microRNA targets for hsa-miR-384 from miranda.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 0.01042 1307 0.03856 183 microRNA targets for hsa-miR-224 from miranda.targets www.mirbase.org...
Null hsa-miR-621 View Gene Set 0.01061 615 0.03903 184 microRNA targets for hsa-miR-621 from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.01067 2065 0.03906 185 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.01078 1901 0.03925 186 microRNA targets for hsa-miR-520d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 0.01095 1611 0.03964 187 microRNA targets for hsa-miR-30a from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.0114 1687 0.04105 188 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.01171 2118 0.04171 189 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-365 View Gene Set 0.0117 788 0.04171 189 microRNA targets for hsa-miR-365 from miranda.targets www.mirbase.org...
Null hsa-miR-297 View Gene Set 0.01215 1497 0.04305 191 microRNA targets for hsa-miR-297 from miranda.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 0.01271 937 0.04475 192 microRNA targets for hsa-miR-323-3p from miranda.targets www.mirbase.org...
Null hsa-miR-675 View Gene Set 0.01276 528 0.04475 192 microRNA targets for hsa-miR-675 from miranda.targets www.mirbase.org...
Null hsa-miR-1205 View Gene Set 0.01295 1762 0.04518 194 microRNA targets for hsa-miR-1205 from miranda.targets www.mirbase.org...
Null hsa-miR-584 View Gene Set 0.01384 1065 0.04803 195 microRNA targets for hsa-miR-584 from miranda.targets www.mirbase.org...
Null hsa-miR-515-3p View Gene Set 0.0142 1221 0.04905 196 microRNA targets for hsa-miR-515-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1237 View Gene Set 0.01446 1455 0.04971 197 microRNA targets for hsa-miR-1237 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-26b View Gene Set 7.64e-08 696 5.432e-05 1 microRNA targets for hsa-miR-26b from mirbase.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 2.837e-07 789 0.0001009 2 microRNA targets for hsa-miR-19b from mirbase.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 4.939e-07 769 0.0001023 3 microRNA targets for hsa-miR-454 from mirbase.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 8.633e-07 651 0.0001023 3 microRNA targets for hsa-miR-561 from mirbase.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 6.538e-07 742 0.0001023 3 microRNA targets for hsa-miR-590-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 8.189e-07 837 0.0001023 3 microRNA targets for hsa-miR-590-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7b* View Gene Set 1.256e-06 772 0.0001276 7 microRNA targets for hsa-let-7b* from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 1.847e-06 978 0.0001642 8 microRNA targets for hsa-miR-548d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 2.086e-06 803 0.0001648 9 microRNA targets for hsa-miR-19a from mirbase.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 6.596e-06 731 0.000469 10 microRNA targets for hsa-miR-194 from mirbase.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 1.096e-05 709 0.0007086 11 microRNA targets for hsa-miR-191 from mirbase.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 1.793e-05 854 0.001062 12 microRNA targets for hsa-miR-200b from mirbase.targets www.mirbase.org...
Null hsa-let-7d* View Gene Set 2.854e-05 781 0.001561 13 microRNA targets for hsa-let-7d* from mirbase.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 3.547e-05 570 0.001801 14 microRNA targets for hsa-miR-9* from mirbase.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 5.221e-05 718 0.00232 15 microRNA targets for hsa-miR-26a from mirbase.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 4.955e-05 581 0.00232 15 microRNA targets for hsa-miR-340 from mirbase.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 6.026e-05 761 0.00252 17 microRNA targets for hsa-miR-499-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 7.48e-05 793 0.002799 18 microRNA targets for hsa-miR-429 from mirbase.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 7.254e-05 704 0.002799 18 microRNA targets for hsa-miR-513-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-493* View Gene Set 8.105e-05 522 0.002881 20 microRNA targets for hsa-miR-493* from mirbase.targets www.mirbase.org...
Null hsa-let-7a* View Gene Set 0.0001026 772 0.003039 21 microRNA targets for hsa-let-7a* from mirbase.targets www.mirbase.org...
Null hsa-let-7f-1* View Gene Set 0.0001022 751 0.003039 21 microRNA targets for hsa-let-7f-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 9.767e-05 871 0.003039 21 microRNA targets for hsa-miR-200c from mirbase.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 9.249e-05 771 0.003039 21 microRNA targets for hsa-miR-320 from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 0.0001293 818 0.003677 25 microRNA targets for hsa-miR-548b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 0.0001499 779 0.0041 26 microRNA targets for hsa-miR-376b from mirbase.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.0001846 832 0.004687 27 microRNA targets for hsa-miR-520d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.0001803 539 0.004687 27 microRNA targets for hsa-miR-539 from mirbase.targets www.mirbase.org...
Null hsa-miR-181a-2* View Gene Set 0.0002524 742 0.005981 29 microRNA targets for hsa-miR-181a-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 0.0002465 657 0.005981 29 microRNA targets for hsa-miR-488 from mirbase.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.0002633 800 0.006038 31 microRNA targets for hsa-miR-148a from mirbase.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.0002775 643 0.006139 32 microRNA targets for hsa-miR-381 from mirbase.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.0002849 699 0.006139 32 microRNA targets for hsa-miR-888 from mirbase.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.0003447 581 0.007208 34 microRNA targets for hsa-miR-380 from mirbase.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.0003937 689 0.007998 35 microRNA targets for hsa-miR-935 from mirbase.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.0004315 763 0.008522 36 microRNA targets for hsa-miR-301b from mirbase.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.0004503 739 0.008653 37 microRNA targets for hsa-miR-587 from mirbase.targets www.mirbase.org...
Null hsa-let-7g* View Gene Set 0.0005419 827 0.009632 38 microRNA targets for hsa-let-7g* from mirbase.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.0005365 746 0.009632 38 microRNA targets for hsa-miR-376a from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 0.0005348 863 0.009632 38 microRNA targets for hsa-miR-548c-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.0006352 796 0.01102 41 microRNA targets for hsa-miR-144 from mirbase.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 0.0006856 672 0.01161 42 microRNA targets for hsa-miR-300 from mirbase.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.0007178 807 0.01187 43 microRNA targets for hsa-miR-30b from mirbase.targets www.mirbase.org...
Null hsa-miR-208b View Gene Set 0.0008508 678 0.0129 44 microRNA targets for hsa-miR-208b from mirbase.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.0008709 724 0.0129 44 microRNA targets for hsa-miR-21 from mirbase.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.0008037 803 0.0129 44 microRNA targets for hsa-miR-212 from mirbase.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 0.0008683 729 0.0129 44 microRNA targets for hsa-miR-452 from mirbase.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 0.0008217 705 0.0129 44 microRNA targets for hsa-miR-628-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.0009234 514 0.0134 49 microRNA targets for hsa-miR-656 from mirbase.targets www.mirbase.org...
Null hsa-miR-124* View Gene Set 0.0009962 599 0.01417 50 microRNA targets for hsa-miR-124* from mirbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.001044 780 0.01455 51 microRNA targets for hsa-miR-16 from mirbase.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.001322 740 0.01808 52 microRNA targets for hsa-miR-155 from mirbase.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 0.001455 818 0.01952 53 microRNA targets for hsa-miR-101 from mirbase.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 0.001534 654 0.0202 54 microRNA targets for hsa-miR-655 from mirbase.targets www.mirbase.org...
Null hsa-miR-101* View Gene Set 0.00159 605 0.02045 55 microRNA targets for hsa-miR-101* from mirbase.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.001611 628 0.02045 55 microRNA targets for hsa-miR-203 from mirbase.targets www.mirbase.org...
Null hsa-miR-187* View Gene Set 0.001646 557 0.02054 57 microRNA targets for hsa-miR-187* from mirbase.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.001765 883 0.02163 58 microRNA targets for hsa-miR-518b from mirbase.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 0.001796 763 0.02165 59 microRNA targets for hsa-miR-376c from mirbase.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.001946 793 0.02306 60 microRNA targets for hsa-miR-124 from mirbase.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.001979 745 0.02307 61 microRNA targets for hsa-miR-216b from mirbase.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 0.00212 821 0.02431 62 microRNA targets for hsa-miR-582-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-222 View Gene Set 0.002441 714 0.02755 63 microRNA targets for hsa-miR-222 from mirbase.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 0.002494 795 0.02771 64 microRNA targets for hsa-miR-337-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-525-3p View Gene Set 0.002619 790 0.02865 65 microRNA targets for hsa-miR-525-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.002729 824 0.0294 66 microRNA targets for hsa-miR-455-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.002963 719 0.03144 67 microRNA targets for hsa-miR-105 from mirbase.targets www.mirbase.org...
Null hsa-miR-521 View Gene Set 0.003007 700 0.03145 68 microRNA targets for hsa-miR-521 from mirbase.targets www.mirbase.org...
Null hsa-let-7c* View Gene Set 0.003055 755 0.03148 69 microRNA targets for hsa-let-7c* from mirbase.targets www.mirbase.org...
Null hsa-miR-219-5p View Gene Set 0.003102 816 0.03151 70 microRNA targets for hsa-miR-219-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-362-3p View Gene Set 0.003148 760 0.03152 71 microRNA targets for hsa-miR-362-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.003336 708 0.03294 72 microRNA targets for hsa-miR-524-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-371-5p View Gene Set 0.003403 779 0.03313 73 microRNA targets for hsa-miR-371-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-555 View Gene Set 0.003448 690 0.03313 73 microRNA targets for hsa-miR-555 from mirbase.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.003721 805 0.03461 75 microRNA targets for hsa-miR-497 from mirbase.targets www.mirbase.org...
Null hsa-miR-501-5p View Gene Set 0.003748 749 0.03461 75 microRNA targets for hsa-miR-501-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 0.003694 755 0.03461 75 microRNA targets for hsa-miR-891b from mirbase.targets www.mirbase.org...
Null hsa-miR-518e View Gene Set 0.003853 923 0.03512 78 microRNA targets for hsa-miR-518e from mirbase.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 0.00396 548 0.03564 79 microRNA targets for hsa-miR-374a from mirbase.targets www.mirbase.org...
Null hsa-miR-558 View Gene Set 0.004108 618 0.03651 80 microRNA targets for hsa-miR-558 from mirbase.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.004272 667 0.0375 81 microRNA targets for hsa-miR-603 from mirbase.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 0.004556 690 0.0395 82 microRNA targets for hsa-miR-146b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.004621 817 0.03958 83 microRNA targets for hsa-miR-15a from mirbase.targets www.mirbase.org...
Null hsa-let-7e* View Gene Set 0.004687 790 0.03961 84 microRNA targets for hsa-let-7e* from mirbase.targets www.mirbase.org...
Null hsa-miR-10b View Gene Set 0.004774 693 0.03961 84 microRNA targets for hsa-miR-10b from mirbase.targets www.mirbase.org...
Null hsa-miR-208 View Gene Set 0.004846 664 0.03961 84 microRNA targets for hsa-miR-208 from mirbase.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.004794 799 0.03961 84 microRNA targets for hsa-miR-30c from mirbase.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.005208 832 0.04207 88 microRNA targets for hsa-miR-148b from mirbase.targets www.mirbase.org...
Null hsa-miR-487b View Gene Set 0.005266 670 0.04207 88 microRNA targets for hsa-miR-487b from mirbase.targets www.mirbase.org...
Null hsa-miR-498 View Gene Set 0.0055 744 0.04345 90 microRNA targets for hsa-miR-498 from mirbase.targets www.mirbase.org...
Null hsa-miR-144* View Gene Set 0.005659 446 0.04422 91 microRNA targets for hsa-miR-144* from mirbase.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.005929 659 0.04533 92 microRNA targets for hsa-miR-1 from mirbase.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.005868 603 0.04533 92 microRNA targets for hsa-miR-570 from mirbase.targets www.mirbase.org...
Null hsa-miR-524-3p View Gene Set 0.00612 791 0.04629 94 microRNA targets for hsa-miR-524-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-302c* View Gene Set 0.006278 615 0.04675 95 microRNA targets for hsa-miR-302c* from mirbase.targets www.mirbase.org...
Null hsa-miR-634 View Gene Set 0.006443 714 0.04675 95 microRNA targets for hsa-miR-634 from mirbase.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.006357 683 0.04675 95 microRNA targets for hsa-miR-802 from mirbase.targets www.mirbase.org...
Null hsa-miR-875-5p View Gene Set 0.006431 742 0.04675 95 microRNA targets for hsa-miR-875-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 0.006631 798 0.04715 99 microRNA targets for hsa-miR-301a from mirbase.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.006598 767 0.04715 99 microRNA targets for hsa-miR-491-3p from mirbase.targets www.mirbase.org...
Null hsa-let-7f-2* View Gene Set 0.007025 820 0.04936 101 microRNA targets for hsa-let-7f-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.007081 574 0.04936 101 microRNA targets for hsa-miR-374b from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-124 View Gene Set 4.793e-07 432 0.0002651 1 microRNA targets for hsa-miR-124 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 1.113e-05 439 0.001539 2 microRNA targets for hsa-miR-506 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 1.081e-05 2046 0.001539 2 microRNA targets for hsa-miR-590-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 1.018e-05 1137 0.001539 2 microRNA targets for hsa-miR-607 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 1.402e-05 1804 0.001551 5 microRNA targets for hsa-miR-548c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 3.243e-05 567 0.002294 6 microRNA targets for hsa-miR-15a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 3.319e-05 668 0.002294 6 microRNA targets for hsa-miR-200c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-549 View Gene Set 2.879e-05 200 0.002294 6 microRNA targets for hsa-miR-549 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 6.32e-05 491 0.003884 9 microRNA targets for hsa-miR-195 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 7.025e-05 498 0.003885 10 microRNA targets for hsa-miR-26a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0001006 493 0.003972 11 microRNA targets for hsa-miR-26b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 9.357e-05 874 0.003972 11 microRNA targets for hsa-miR-340 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 9.032e-05 1157 0.003972 11 microRNA targets for hsa-miR-548b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 8.417e-05 1151 0.003972 11 microRNA targets for hsa-miR-548c-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.0001402 1120 0.005169 15 microRNA targets for hsa-miR-548a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.0002177 574 0.0061 16 microRNA targets for hsa-miR-141 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.0001918 575 0.0061 16 microRNA targets for hsa-miR-15b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.0002118 496 0.0061 16 microRNA targets for hsa-miR-16 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 0.0002206 589 0.0061 16 microRNA targets for hsa-miR-200a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.0001932 671 0.0061 16 microRNA targets for hsa-miR-200b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 0.0002771 640 0.007296 21 microRNA targets for hsa-miR-429 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 0.0003054 1107 0.007344 22 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 0.0002932 245 0.007344 22 microRNA targets for hsa-miR-891b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.0003457 1147 0.007965 24 microRNA targets for hsa-miR-548d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.0004808 544 0.01038 25 microRNA targets for hsa-miR-381 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-483-3p View Gene Set 0.0005033 124 0.01038 25 microRNA targets for hsa-miR-483-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 0.0005068 977 0.01038 25 microRNA targets for hsa-miR-559 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.000629 983 0.01242 28 microRNA targets for hsa-miR-570 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 0.0006628 1119 0.01264 29 microRNA targets for hsa-miR-513-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-34c-3p View Gene Set 0.0009708 230 0.01789 30 microRNA targets for hsa-miR-34c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.001017 240 0.01814 31 microRNA targets for hsa-miR-183 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.001075 826 0.01859 32 microRNA targets for hsa-miR-520d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 0.001391 396 0.0223 33 microRNA targets for hsa-miR-515-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 0.001357 282 0.0223 33 microRNA targets for hsa-miR-606 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.001412 570 0.0223 33 microRNA targets for hsa-miR-871 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 0.00146 1193 0.02243 36 microRNA targets for hsa-miR-561 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.001751 754 0.02402 37 microRNA targets for hsa-miR-20a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 0.001736 528 0.02402 37 microRNA targets for hsa-miR-300 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 0.001654 251 0.02402 37 microRNA targets for hsa-miR-384 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519b-3p View Gene Set 0.001719 484 0.02402 37 microRNA targets for hsa-miR-519b-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.001781 876 0.02402 37 microRNA targets for hsa-miR-656 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.001933 736 0.02486 42 microRNA targets for hsa-miR-106b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-220b View Gene Set 0.001889 210 0.02486 42 microRNA targets for hsa-miR-220b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519a View Gene Set 0.002026 486 0.02547 44 microRNA targets for hsa-miR-519a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.002087 948 0.02565 45 microRNA targets for hsa-miR-338-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.002135 1246 0.02566 46 microRNA targets for hsa-miR-495 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.002318 445 0.02671 47 microRNA targets for hsa-miR-130b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.002273 404 0.02671 47 microRNA targets for hsa-miR-373 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.002376 449 0.02682 49 microRNA targets for hsa-miR-377 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-365 View Gene Set 0.002578 156 0.02742 50 microRNA targets for hsa-miR-365 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 0.002572 628 0.02742 50 microRNA targets for hsa-miR-424 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.002549 862 0.02742 50 microRNA targets for hsa-miR-524-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.002726 784 0.02794 53 microRNA targets for hsa-miR-17 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.002733 435 0.02794 53 microRNA targets for hsa-miR-372 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.002779 668 0.02794 53 microRNA targets for hsa-miR-497 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 0.00291 365 0.02873 56 microRNA targets for hsa-miR-217 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.003325 440 0.03182 57 microRNA targets for hsa-miR-130a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.003337 382 0.03182 57 microRNA targets for hsa-miR-302a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 0.003575 550 0.03249 59 microRNA targets for hsa-miR-320 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.003516 714 0.03249 59 microRNA targets for hsa-miR-519d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.003584 775 0.03249 59 microRNA targets for hsa-miR-93 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 0.00372 820 0.03318 62 microRNA targets for hsa-miR-655 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.004022 590 0.03517 63 microRNA targets for hsa-miR-587 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-646 View Gene Set 0.004134 365 0.03517 63 microRNA targets for hsa-miR-646 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.004102 423 0.03517 63 microRNA targets for hsa-miR-9 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 0.00458 370 0.03673 66 microRNA targets for hsa-miR-302c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.004692 496 0.03673 66 microRNA targets for hsa-miR-380 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.004601 442 0.03673 66 microRNA targets for hsa-miR-454 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519c-3p View Gene Set 0.004481 493 0.03673 66 microRNA targets for hsa-miR-519c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 0.00445 731 0.03673 66 microRNA targets for hsa-miR-577 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 0.004715 275 0.03673 66 microRNA targets for hsa-miR-590-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.005069 795 0.0384 72 microRNA targets for hsa-miR-20b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-574-3p View Gene Set 0.005022 19 0.0384 72 microRNA targets for hsa-miR-574-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-203