Results

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Go to: Gene Set Collection: KEGG
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Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c3.MIR
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Go to: Gene Set Collection: Broad.c4.CGN
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: Broad.c5.CC
Go to: Gene Set Collection: Broad.c5.MF
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: Enzyme
Go to: Gene Set Collection: ppi.BioGRID
Go to: Gene Set Collection: ppi.HPRD
Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.cell-map
Go to: Gene Set Collection: pathwayCommons.humancyc
Go to: Gene Set Collection: pathwayCommons.nci-nature
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: mirbase.targets
Go to: Gene Set Collection: mirtarget2.targets
Go to: Gene Set Collection: pictar.targets
Go to: Gene Set Collection: tarbase.targets
Go to: Gene Set Collection: targetscan.targets
Go to: Gene Set Collection: miRNAtargetIntersection
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: hprdBatch.UP
Go to: Gene Set Collection: hprdBatch.DOWN
Go to: Gene Set Collection: hprdBatch.DIFFERENT
Go to: Gene Set Collection: hprdManual.UP
Go to: Gene Set Collection: hprdManual.DOWN
Go to: Gene Set Collection: hprdManual.DIFFERENT

AFA results for: tVPAda2PC3

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 03040 View Gene Set 1.756e-11 128 3.759e-09 1 Spliceosome www.genome.jp/d...
KEGG 00240 View Gene Set 4.037e-08 99 4.32e-06 2 Pyrimidine metabolism www.genome.jp/d...
KEGG 01100 View Gene Set 4.667e-06 1120 0.0002712 3 Metabolic pathways www.genome.jp/d...
KEGG 03030 View Gene Set 5.069e-06 36 0.0002712 3 DNA replication www.genome.jp/d...
KEGG 03018 View Gene Set 1.936e-05 59 0.0008285 5 RNA degradation www.genome.jp/d...
KEGG 04110 View Gene Set 5.804e-05 128 0.00207 6 Cell cycle www.genome.jp/d...
KEGG 03020 View Gene Set 6.926e-05 29 0.002117 7 RNA polymerase www.genome.jp/d...
KEGG 00230 View Gene Set 8.195e-05 161 0.002192 8 Purine metabolism www.genome.jp/d...
KEGG 04141 View Gene Set 0.0001339 167 0.003185 9 Protein processing in endoplasmic reticulum www.genome.jp/d...
KEGG 05016 View Gene Set 0.0002329 184 0.004983 10 Huntington's disease www.genome.jp/d...
KEGG 03060 View Gene Set 0.0005434 24 0.01057 11 Protein export www.genome.jp/d...
KEGG 03410 View Gene Set 0.001191 34 0.02123 12 Base excision repair www.genome.jp/d...
KEGG 00190 View Gene Set 0.001813 134 0.02586 13 Oxidative phosphorylation www.genome.jp/d...
KEGG 03440 View Gene Set 0.00171 28 0.02586 13 Homologous recombination www.genome.jp/d...
KEGG 05012 View Gene Set 0.001605 132 0.02586 13 Parkinson's disease www.genome.jp/d...
KEGG 00520 View Gene Set 0.003863 45 0.04593 16 Amino sugar and nucleotide sugar metabolism www.genome.jp/d...
KEGG 00670 View Gene Set 0.003854 17 0.04593 16 One carbon pool by folate www.genome.jp/d...
KEGG 04120 View Gene Set 0.003689 139 0.04593 16 Ubiquitin mediated proteolysis www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0044424 View Gene Set 1.355e-51 10976 1.81e-47 1 intracellular part amigo.geneontol...
GO GO:0005622 View Gene Set 5.793e-51 11329 3.87e-47 2 intracellular amigo.geneontol...
GO GO:0043227 View Gene Set 6.495e-44 8383 2.892e-40 3 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 1.27e-43 8376 4.243e-40 4 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0043229 View Gene Set 3.397e-42 9346 9.078e-39 5 intracellular organelle amigo.geneontol...
GO GO:0043226 View Gene Set 5.532e-42 9360 1.232e-38 6 organelle amigo.geneontol...
GO GO:0044446 View Gene Set 9.55e-35 5019 1.823e-31 7 intracellular organelle part amigo.geneontol...
GO GO:0044422 View Gene Set 1.662e-33 5089 2.775e-30 8 organelle part amigo.geneontol...
GO GO:0044428 View Gene Set 2.276e-31 1938 3.378e-28 9 nuclear part amigo.geneontol...
GO GO:0005737 View Gene Set 1.284e-30 7676 1.716e-27 10 cytoplasm amigo.geneontol...
GO GO:0070013 View Gene Set 2.407e-29 1845 2.923e-26 11 intracellular organelle lumen amigo.geneontol...
GO GO:0031974 View Gene Set 6.731e-29 1917 7.494e-26 12 membrane-enclosed lumen amigo.geneontol...
GO GO:0043233 View Gene Set 6.959e-28 1881 7.151e-25 13 organelle lumen amigo.geneontol...
GO GO:0031981 View Gene Set 1.512e-24 1518 1.442e-21 14 nuclear lumen amigo.geneontol...
GO GO:0006396 View Gene Set 2.658e-23 578 2.367e-20 15 RNA processing amigo.geneontol...
GO GO:0005739 View Gene Set 7.296e-23 1274 6.092e-20 16 mitochondrion amigo.geneontol...
GO GO:0005634 View Gene Set 2.923e-22 5198 2.297e-19 17 nucleus amigo.geneontol...
GO GO:0003723 View Gene Set 9.963e-22 732 7.395e-19 18 RNA binding amigo.geneontol...
GO GO:0044237 View Gene Set 3.684e-21 7431 2.59e-18 19 cellular metabolic process amigo.geneontol...
GO GO:0044444 View Gene Set 5.363e-19 5184 3.583e-16 20 cytoplasmic part amigo.geneontol...
GO GO:0044260 View Gene Set 5.887e-19 5699 3.746e-16 21 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0005515 View Gene Set 2.352e-17 8146 1.428e-14 22 protein binding amigo.geneontol...
GO GO:0030529 View Gene Set 3.327e-17 504 1.778e-14 23 ribonucleoprotein complex amigo.geneontol...
GO GO:0043228 View Gene Set 3.199e-17 2690 1.778e-14 23 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 3.199e-17 2690 1.778e-14 23 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0032991 View Gene Set 4.784e-16 3237 2.458e-13 26 macromolecular complex amigo.geneontol...
GO GO:0005730 View Gene Set 5.581e-16 734 2.762e-13 27 nucleolus amigo.geneontol...
GO GO:0008152 View Gene Set 2.284e-15 8439 1.09e-12 28 metabolic process amigo.geneontol...
GO GO:0008380 View Gene Set 3.749e-15 300 1.727e-12 29 RNA splicing amigo.geneontol...
GO GO:0044238 View Gene Set 6.961e-15 7629 3.1e-12 30 primary metabolic process amigo.geneontol...
GO GO:0034470 View Gene Set 8.587e-15 193 3.701e-12 31 ncRNA processing amigo.geneontol...
GO GO:0043170 View Gene Set 1.664e-14 6274 6.947e-12 32 macromolecule metabolic process amigo.geneontol...
GO GO:0090304 View Gene Set 2.059e-14 3724 8.334e-12 33 nucleic acid metabolic process amigo.geneontol...
GO GO:0034660 View Gene Set 1.037e-13 236 4.073e-11 34 ncRNA metabolic process amigo.geneontol...
GO GO:0044429 View Gene Set 2.905e-13 619 1.109e-10 35 mitochondrial part amigo.geneontol...
GO GO:0022613 View Gene Set 3.558e-13 194 1.32e-10 36 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0005654 View Gene Set 4.922e-13 939 1.777e-10 37 nucleoplasm amigo.geneontol...
GO GO:0006139 View Gene Set 6.15e-13 4294 2.162e-10 38 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0031967 View Gene Set 8.645e-13 672 2.962e-10 39 organelle envelope amigo.geneontol...
GO GO:0034641 View Gene Set 2.602e-12 4584 8.692e-10 40 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0031975 View Gene Set 4.989e-12 685 1.626e-09 41 envelope amigo.geneontol...
GO GO:0003676 View Gene Set 7.075e-12 2979 2.251e-09 42 nucleic acid binding amigo.geneontol...
GO GO:0006807 View Gene Set 7.391e-12 4698 2.296e-09 43 nitrogen compound metabolic process amigo.geneontol...
GO GO:0010467 View Gene Set 1.451e-11 3806 4.405e-09 44 gene expression amigo.geneontol...
GO GO:0006259 View Gene Set 3.96e-11 592 1.176e-08 45 DNA metabolic process amigo.geneontol...
GO GO:0016071 View Gene Set 4.114e-11 381 1.195e-08 46 mRNA metabolic process amigo.geneontol...
GO GO:0000375 View Gene Set 4.469e-11 106 1.27e-08 47 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0009987 View Gene Set 4.585e-11 11620 1.276e-08 48 cellular process amigo.geneontol...
GO GO:0033554 View Gene Set 1.902e-10 698 5.187e-08 49 cellular response to stress amigo.geneontol...
GO GO:0005681 View Gene Set 2.373e-10 135 6.342e-08 50 spliceosomal complex amigo.geneontol...
GO GO:0006974 View Gene Set 2.731e-10 412 7.155e-08 51 response to DNA damage stimulus amigo.geneontol...
GO GO:0006364 View Gene Set 3.157e-10 97 7.958e-08 52 rRNA processing amigo.geneontol...
GO GO:0016072 View Gene Set 3.135e-10 101 7.958e-08 52 rRNA metabolic process amigo.geneontol...
GO GO:0006260 View Gene Set 4.367e-10 239 1.08e-07 54 DNA replication amigo.geneontol...
GO GO:0006281 View Gene Set 6.548e-10 309 1.59e-07 55 DNA repair amigo.geneontol...
GO GO:0007049 View Gene Set 9.211e-10 1006 2.197e-07 56 cell cycle amigo.geneontol...
GO GO:0006397 View Gene Set 1.058e-09 317 2.479e-07 57 mRNA processing amigo.geneontol...
GO GO:0042254 View Gene Set 1.468e-09 130 3.382e-07 58 ribosome biogenesis amigo.geneontol...
GO GO:0005488 View Gene Set 1.96e-09 12334 4.439e-07 59 binding amigo.geneontol...
GO GO:0000377 View Gene Set 2.063e-09 97 4.519e-07 60 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 2.063e-09 97 4.519e-07 60 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0005740 View Gene Set 2.165e-09 444 4.665e-07 62 mitochondrial envelope amigo.geneontol...
GO GO:0044085 View Gene Set 5.672e-09 1167 1.203e-06 63 cellular component biogenesis amigo.geneontol...
GO GO:0006996 View Gene Set 1.708e-08 1501 3.511e-06 64 organelle organization amigo.geneontol...
GO GO:0044464 View Gene Set 1.707e-08 15066 3.511e-06 64 cell part amigo.geneontol...
GO GO:0005623 View Gene Set 1.948e-08 15067 3.943e-06 66 cell amigo.geneontol...
GO GO:0016779 View Gene Set 2.516e-08 120 5.018e-06 67 nucleotidyltransferase activity amigo.geneontol...
GO GO:0044451 View Gene Set 3.371e-08 600 6.624e-06 68 nucleoplasm part amigo.geneontol...
GO GO:0034621 View Gene Set 5.348e-08 458 1.035e-05 69 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0005694 View Gene Set 1.128e-07 507 2.152e-05 70 chromosome amigo.geneontol...
GO GO:0016070 View Gene Set 1.414e-07 2596 2.623e-05 71 RNA metabolic process amigo.geneontol...
GO GO:0044249 View Gene Set 1.407e-07 4326 2.623e-05 71 cellular biosynthetic process amigo.geneontol...
GO GO:0046907 View Gene Set 2.174e-07 753 3.925e-05 73 intracellular transport amigo.geneontol...
GO GO:0031966 View Gene Set 2.172e-07 420 3.925e-05 73 mitochondrial membrane amigo.geneontol...
GO GO:0005759 View Gene Set 2.745e-07 223 4.826e-05 75 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 2.745e-07 223 4.826e-05 75 mitochondrial lumen amigo.geneontol...
GO GO:0009058 View Gene Set 4.369e-07 4436 7.581e-05 77 biosynthetic process amigo.geneontol...
GO GO:0044427 View Gene Set 5.228e-07 420 8.955e-05 78 chromosomal part amigo.geneontol...
GO GO:0044267 View Gene Set 5.651e-07 2465 9.556e-05 79 cellular protein metabolic process amigo.geneontol...
GO GO:0016604 View Gene Set 6.432e-07 198 0.0001074 80 nuclear body amigo.geneontol...
GO GO:0034622 View Gene Set 7.08e-07 393 0.0001168 81 cellular macromolecular complex assembly amigo.geneontol...
GO GO:0033036 View Gene Set 7.522e-07 1256 0.0001225 82 macromolecule localization amigo.geneontol...
GO GO:0006261 View Gene Set 8.297e-07 74 0.0001335 83 DNA-dependent DNA replication amigo.geneontol...
GO GO:0043234 View Gene Set 1.13e-06 2680 0.0001798 84 protein complex amigo.geneontol...
GO GO:0034645 View Gene Set 1.313e-06 3529 0.0002063 85 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0022402 View Gene Set 1.52e-06 676 0.0002361 86 cell cycle process amigo.geneontol...
GO GO:0000166 View Gene Set 1.543e-06 2257 0.0002369 87 nucleotide binding amigo.geneontol...
GO GO:0006399 View Gene Set 1.676e-06 118 0.0002544 88 tRNA metabolic process amigo.geneontol...
GO GO:0031090 View Gene Set 1.803e-06 1905 0.0002707 89 organelle membrane amigo.geneontol...
GO GO:0022618 View Gene Set 1.832e-06 76 0.0002719 90 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0016853 View Gene Set 2.113e-06 132 0.0003102 91 isomerase activity amigo.geneontol...
GO GO:0045184 View Gene Set 2.213e-06 904 0.0003214 92 establishment of protein localization amigo.geneontol...
GO GO:0006412 View Gene Set 2.252e-06 412 0.0003235 93 translation amigo.geneontol...
GO GO:0015031 View Gene Set 3.116e-06 888 0.0004429 94 protein transport amigo.geneontol...
GO GO:0019866 View Gene Set 3.462e-06 334 0.0004869 95 organelle inner membrane amigo.geneontol...
GO GO:0009059 View Gene Set 3.695e-06 3597 0.0005089 96 macromolecule biosynthetic process amigo.geneontol...
GO GO:0043933 View Gene Set 3.665e-06 836 0.0005089 96 macromolecular complex subunit organization amigo.geneontol...
GO GO:0051726 View Gene Set 3.747e-06 451 0.0005109 98 regulation of cell cycle amigo.geneontol...
GO GO:0008104 View Gene Set 3.911e-06 1048 0.0005278 99 protein localization amigo.geneontol...
GO GO:0051301 View Gene Set 5.477e-06 358 0.0007318 100 cell division amigo.geneontol...
GO GO:0022403 View Gene Set 7.079e-06 522 0.0009364 101 cell cycle phase amigo.geneontol...
GO GO:0005743 View Gene Set 7.46e-06 305 0.0009771 102 mitochondrial inner membrane amigo.geneontol...
GO GO:0008033 View Gene Set 7.907e-06 78 0.001026 103 tRNA processing amigo.geneontol...
GO GO:0008135 View Gene Set 8.793e-06 86 0.00113 104 translation factor activity nucleic acid binding amigo.geneontol...
GO GO:0030532 View Gene Set 8.944e-06 32 0.001138 105 small nuclear ribonucleoprotein complex amigo.geneontol...
GO GO:0065003 View Gene Set 1.329e-05 763 0.001676 106 macromolecular complex assembly amigo.geneontol...
GO GO:0009057 View Gene Set 1.414e-05 570 0.001765 107 macromolecule catabolic process amigo.geneontol...
GO GO:0016043 View Gene Set 1.511e-05 2937 0.001869 108 cellular component organization amigo.geneontol...
GO GO:0003899 View Gene Set 1.549e-05 42 0.001881 109 DNA-directed RNA polymerase activity amigo.geneontol...
GO GO:0034062 View Gene Set 1.549e-05 42 0.001881 109 RNA polymerase activity amigo.geneontol...
GO GO:0030433 View Gene Set 1.745e-05 27 0.0021 111 ER-associated protein catabolic process amigo.geneontol...
GO GO:0022607 View Gene Set 1.969e-05 1043 0.002348 112 cellular component assembly amigo.geneontol...
GO GO:0051276 View Gene Set 2.136e-05 548 0.002525 113 chromosome organization amigo.geneontol...
GO GO:0000278 View Gene Set 2.348e-05 489 0.002742 114 mitotic cell cycle amigo.geneontol...
GO GO:0000785 View Gene Set 2.36e-05 213 0.002742 114 chromatin amigo.geneontol...
GO GO:0000279 View Gene Set 2.523e-05 406 0.002906 116 M phase amigo.geneontol...
GO GO:0044265 View Gene Set 2.614e-05 479 0.002985 117 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0003824 View Gene Set 2.929e-05 5198 0.003316 118 catalytic activity amigo.geneontol...
GO GO:0000280 View Gene Set 3.384e-05 276 0.003768 119 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 3.384e-05 276 0.003768 119 mitosis amigo.geneontol...
GO GO:0051082 View Gene Set 3.673e-05 113 0.004055 121 unfolded protein binding amigo.geneontol...
GO GO:0005635 View Gene Set 4.124e-05 234 0.004516 122 nuclear envelope amigo.geneontol...
GO GO:0016866 View Gene Set 4.258e-05 27 0.004625 123 intramolecular transferase activity amigo.geneontol...
GO GO:0043021 View Gene Set 4.574e-05 39 0.004928 124 ribonucleoprotein binding amigo.geneontol...
GO GO:0015030 View Gene Set 5.613e-05 43 0.005999 125 Cajal body amigo.geneontol...
GO GO:0048285 View Gene Set 5.708e-05 286 0.006053 126 organelle fission amigo.geneontol...
GO GO:0003743 View Gene Set 5.861e-05 52 0.006166 127 translation initiation factor activity amigo.geneontol...
GO GO:0009295 View Gene Set 6.317e-05 31 0.006542 128 nucleoid amigo.geneontol...
GO GO:0042645 View Gene Set 6.317e-05 31 0.006542 128 mitochondrial nucleoid amigo.geneontol...
GO GO:0005829 View Gene Set 6.512e-05 1323 0.006692 130 cytosol amigo.geneontol...
GO GO:0006270 View Gene Set 6.894e-05 26 0.007031 131 DNA-dependent DNA replication initiation amigo.geneontol...
GO GO:0000792 View Gene Set 7.422e-05 52 0.007511 132 heterochromatin amigo.geneontol...
GO GO:0016585 View Gene Set 8.088e-05 84 0.008125 133 chromatin remodeling complex amigo.geneontol...
GO GO:0034728 View Gene Set 8.629e-05 93 0.008603 134 nucleosome organization amigo.geneontol...
GO GO:0015630 View Gene Set 8.98e-05 587 0.008887 135 microtubule cytoskeleton amigo.geneontol...
GO GO:0005840 View Gene Set 9.686e-05 198 0.009515 136 ribosome amigo.geneontol...
GO GO:0006457 View Gene Set 9.92e-05 172 0.009542 137 protein folding amigo.geneontol...
GO GO:0050657 View Gene Set 9.999e-05 102 0.009542 137 nucleic acid transport amigo.geneontol...
GO GO:0050658 View Gene Set 9.999e-05 102 0.009542 137 RNA transport amigo.geneontol...
GO GO:0051236 View Gene Set 9.999e-05 102 0.009542 137 establishment of RNA localization amigo.geneontol...
GO GO:0031570 View Gene Set 0.0001028 63 0.00974 141 DNA integrity checkpoint amigo.geneontol...
GO GO:0032392 View Gene Set 0.0001073 19 0.009888 142 DNA geometric change amigo.geneontol...
GO GO:0032508 View Gene Set 0.0001073 19 0.009888 142 DNA duplex unwinding amigo.geneontol...
GO GO:0071103 View Gene Set 0.0001062 140 0.009888 142 DNA conformation change amigo.geneontol...
GO GO:0016607 View Gene Set 0.0001063 116 0.009888 142 nuclear speck amigo.geneontol...
GO GO:0006403 View Gene Set 0.00011 104 0.01006 146 RNA localization amigo.geneontol...
GO GO:0070727 View Gene Set 0.0001192 503 0.01084 147 cellular macromolecule localization amigo.geneontol...
GO GO:0051649 View Gene Set 0.0001431 1116 0.01292 148 establishment of localization in cell amigo.geneontol...
GO GO:0000228 View Gene Set 0.0001477 177 0.01324 149 nuclear chromosome amigo.geneontol...
GO GO:0009219 View Gene Set 0.0001529 12 0.01346 150 pyrimidine deoxyribonucleotide metabolic process amigo.geneontol...
GO GO:0009451 View Gene Set 0.000153 51 0.01346 150 RNA modification amigo.geneontol...
GO GO:0030684 View Gene Set 0.0001531 14 0.01346 150 preribosome amigo.geneontol...
GO GO:0051028 View Gene Set 0.0001546 90 0.0135 153 mRNA transport amigo.geneontol...
GO GO:0034613 View Gene Set 0.0001614 501 0.014 154 cellular protein localization amigo.geneontol...
GO GO:0007005 View Gene Set 0.0001629 139 0.01404 155 mitochondrion organization amigo.geneontol...
GO GO:0000087 View Gene Set 0.0001741 286 0.01491 156 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0030174 View Gene Set 0.0001768 11 0.01504 157 regulation of DNA-dependent DNA replication initiation amigo.geneontol...
GO GO:0031497 View Gene Set 0.00018 87 0.01522 158 chromatin assembly amigo.geneontol...
GO GO:0006886 View Gene Set 0.0001837 439 0.01543 159 intracellular protein transport amigo.geneontol...
GO GO:0065004 View Gene Set 0.0001854 99 0.01548 160 protein-DNA complex assembly amigo.geneontol...
GO GO:0016874 View Gene Set 0.0001985 436 0.01647 161 ligase activity amigo.geneontol...
GO GO:0090329 View Gene Set 0.0002004 18 0.01653 162 regulation of DNA-dependent DNA replication amigo.geneontol...
GO GO:0051641 View Gene Set 0.0002122 1206 0.0174 163 cellular localization amigo.geneontol...
GO GO:0000775 View Gene Set 0.0002305 146 0.01866 164 chromosome centromeric region amigo.geneontol...
GO GO:0005783 View Gene Set 0.0002297 1024 0.01866 164 endoplasmic reticulum amigo.geneontol...
GO GO:0042175 View Gene Set 0.0002385 637 0.01919 166 nuclear membrane-endoplasmic reticulum network amigo.geneontol...
GO GO:0005815 View Gene Set 0.0002879 277 0.02303 167 microtubule organizing center amigo.geneontol...
GO GO:0006401 View Gene Set 0.0002998 74 0.02384 168 RNA catabolic process amigo.geneontol...
GO GO:0019538 View Gene Set 0.0003021 2935 0.02388 169 protein metabolic process amigo.geneontol...
GO GO:0001522 View Gene Set 0.0003539 14 0.02765 170 pseudouridine synthesis amigo.geneontol...
GO GO:0006334 View Gene Set 0.0003532 83 0.02765 170 nucleosome assembly amigo.geneontol...
GO GO:0030163 View Gene Set 0.0003678 398 0.02857 172 protein catabolic process amigo.geneontol...
GO GO:0070972 View Gene Set 0.000379 16 0.0291 173 protein localization in endoplasmic reticulum amigo.geneontol...
GO GO:0044454 View Gene Set 0.000379 139 0.0291 173 nuclear chromosome part amigo.geneontol...
GO GO:0034399 View Gene Set 0.0004008 71 0.0306 175 nuclear periphery amigo.geneontol...
GO GO:0044432 View Gene Set 0.0004407 689 0.03345 176 endoplasmic reticulum part amigo.geneontol...
GO GO:0006268 View Gene Set 0.0004754 12 0.03588 177 DNA unwinding involved in replication amigo.geneontol...
GO GO:0000077 View Gene Set 0.0004846 59 0.03638 178 DNA damage checkpoint amigo.geneontol...
GO GO:0006333 View Gene Set 0.0004933 129 0.03682 179 chromatin assembly or disassembly amigo.geneontol...
GO GO:0006405 View Gene Set 0.0004967 44 0.03687 180 RNA export from nucleus amigo.geneontol...
GO GO:0005732 View Gene Set 0.0005155 13 0.03805 181 small nucleolar ribonucleoprotein complex amigo.geneontol...
GO GO:0003735 View Gene Set 0.0005536 158 0.04064 182 structural constituent of ribosome amigo.geneontol...
GO GO:0000387 View Gene Set 0.0005573 31 0.04069 183 spliceosomal snRNP assembly amigo.geneontol...
GO GO:0009262 View Gene Set 0.0005708 27 0.04144 184 deoxyribonucleotide metabolic process amigo.geneontol...
GO GO:0005789 View Gene Set 0.0005786 622 0.04179 185 endoplasmic reticulum membrane amigo.geneontol...
GO GO:0022900 View Gene Set 0.0006398 115 0.04596 186 electron transport chain amigo.geneontol...
GO GO:0045047 View Gene Set 0.0006753 9 0.04825 187 protein targeting to ER amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr12q24 View Gene Set 0.0001795 211 0.03592 1 Genes in cytogenetic band chr12q24 www.broad.mit.e...
Broad chr14q23 View Gene Set 0.0002204 62 0.03592 1 Genes in cytogenetic band chr14q23 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 1.276e-46 577 3.052e-43 1 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 1.477e-43 1353 1.767e-40 2 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 4.034e-43 1582 3.217e-40 3 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 7.563e-42 920 4.523e-39 4 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 2.524e-39 744 1.207e-36 5 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 4.017e-37 832 1.601e-34 6 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 1.77e-31 944 6.048e-29 7 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 5.785e-31 639 1.73e-28 8 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 1.613e-29 859 4.286e-27 9 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 2.873e-29 537 6.873e-27 10 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 1.206e-28 1253 2.623e-26 11 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 2.989e-27 276 5.957e-25 12 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 1.714e-25 757 3.153e-23 13 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 1.121e-24 1180 1.916e-22 14 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 2.184e-24 758 3.483e-22 15 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 7.233e-24 1045 1.081e-21 16 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 2.538e-23 806 3.572e-21 17 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 8.131e-23 485 1.08e-20 18 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 3.4e-22 1209 4.28e-20 19 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 1.884e-21 415 2.254e-19 20 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 3.526e-21 657 4.016e-19 21 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 2.558e-20 711 2.782e-18 22 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 4.865e-20 946 5.06e-18 23 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 1.451e-18 294 1.446e-16 24 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 1.637e-18 435 1.566e-16 25 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 1.999e-17 768 1.839e-15 26 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 2.289e-17 331 2.028e-15 27 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 4.198e-17 589 3.586e-15 28 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 1.711e-16 915 1.411e-14 29 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 2.842e-16 532 2.266e-14 30 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 5.984e-16 475 4.617e-14 31 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 3.503e-15 290 2.618e-13 32 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 4.46e-15 681 3.233e-13 33 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 5.613e-15 265 3.949e-13 34 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 6.303e-15 301 4.307e-13 35 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES View Gene Set 8.401e-15 384 5.582e-13 36 Housekeeping genes identified as expressed across 19 normal tissues. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 8.774e-15 517 5.672e-13 37 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 9.452e-15 739 5.95e-13 38 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 1.799e-14 869 1.104e-12 39 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 2.898e-14 599 1.733e-12 40 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 3.105e-14 351 1.811e-12 41 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 3.647e-14 420 2.077e-12 42 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 4.413e-14 279 2.455e-12 43 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 6.344e-14 666 3.449e-12 44 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 1.051e-13 406 5.585e-12 45 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 1.159e-13 243 6.025e-12 46 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 1.239e-13 187 6.306e-12 47 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 1.424e-13 469 7.096e-12 48 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 1.538e-13 408 7.507e-12 49 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_DN View Gene Set 1.654e-13 161 7.915e-12 50 Genes down-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad LAIHO_COLORECTAL_CANCER_SERRATED_UP View Gene Set 2.801e-13 108 1.314e-11 51 Genes up-regulated in serrated vs conventional colorectal carcinoma (CRC) samples. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_UP View Gene Set 3.329e-13 328 1.503e-11 52 Genes up-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 3.296e-13 332 1.503e-11 52 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 3.558e-13 427 1.576e-11 54 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 4.847e-13 127 2.108e-11 55 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 5.379e-13 182 2.297e-11 56 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 5.551e-13 303 2.33e-11 57 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 5.822e-13 630 2.401e-11 58 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 6.431e-13 1375 2.607e-11 59 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 7.447e-13 433 2.969e-11 60 Mitochondrial genes www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1 View Gene Set 9.751e-13 491 3.824e-11 61 The 'group 1 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 1.466e-12 184 5.658e-11 62 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 1.558e-12 704 5.917e-11 63 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN View Gene Set 1.704e-12 123 6.367e-11 64 Genes highly expressed in hepatocellular carcinoma with poor survival. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 1.811e-12 124 6.665e-11 65 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 2.221e-12 213 8.05e-11 66 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 4.73e-12 453 1.689e-10 67 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 5.661e-12 154 1.991e-10 68 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 7.076e-12 508 2.453e-10 69 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 1.087e-11 571 3.716e-10 70 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5 View Gene Set 1.161e-11 446 3.913e-10 71 The 'group 5 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 but not ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 1.33e-11 283 4.42e-10 72 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 1.417e-11 178 4.643e-10 73 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 1.842e-11 825 5.954e-10 74 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 2.006e-11 410 6.398e-10 75 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 2.054e-11 437 6.465e-10 76 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 2.281e-11 402 7.085e-10 77 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 2.699e-11 96 8.275e-10 78 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 3.05e-11 1641 9.233e-10 79 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad GRUETZMANN_PANCREATIC_CANCER_UP View Gene Set 3.146e-11 345 9.405e-10 80 Genes up-regulated in pancreatic ductal adenocarcinoma (PDAC) identified in a meta analysis across four independent studies. www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN View Gene Set 3.758e-11 431 1.11e-09 81 Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 3.845e-11 783 1.122e-09 82 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 4.826e-11 359 1.391e-09 83 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 5.915e-11 165 1.684e-09 84 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 6.55e-11 436 1.843e-09 85 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad WAMUNYOKOLI_OVARIAN_CANCER_LMP_UP View Gene Set 7.226e-11 244 2.01e-09 86 Genes up-regulated in mucinous ovarian carcinoma tumors of low malignant potential (LMP) compared to normal ovarian surface epithelium tissue. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 7.426e-11 436 2.042e-09 87 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_DN View Gene Set 7.592e-11 217 2.064e-09 88 Genes down-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_DN View Gene Set 8.937e-11 329 2.402e-09 89 Genes down-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN View Gene Set 9.086e-11 444 2.415e-09 90 Genes down-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_11 View Gene Set 1.226e-10 93 3.222e-09 91 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP View Gene Set 1.245e-10 452 3.238e-09 92 Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP View Gene Set 1.352e-10 263 3.44e-09 93 Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 1.347e-10 314 3.44e-09 93 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 1.893e-10 367 4.766e-09 95 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad ALONSO_METASTASIS_UP View Gene Set 2.209e-10 152 5.505e-09 96 Up-regulated genes in melanoma tumous that developed metastatic disease compared to primary melanoma that did not. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_DN View Gene Set 3.441e-10 200 8.486e-09 97 Genes down-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad LIAO_METASTASIS View Gene Set 4.135e-10 513 1.009e-08 98 Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC. www.broad.mit.e...
Broad HAN_SATB1_TARGETS_DN View Gene Set 5.709e-10 320 1.379e-08 99 Genes down-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 6.302e-10 370 1.508e-08 100 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 6.737e-10 208 1.596e-08 101 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 7.32e-10 353 1.717e-08 102 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 1.002e-09 289 2.315e-08 103 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 1.006e-09 241 2.315e-08 103 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 1.352e-09 509 3.08e-08 105 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 2.628e-09 46 5.931e-08 106 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad BILD_HRAS_ONCOGENIC_SIGNATURE View Gene Set 2.751e-09 248 6.15e-08 107 Genes selected in supervised analyses to discriminate cells expressing activated HRAS [Gene ID=3265] oncogene from control cells expressing GFP. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS View Gene Set 3.033e-09 855 6.718e-08 108 Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi. www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215 View Gene Set 3.273e-09 809 7.182e-08 109 Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14 View Gene Set 3.572e-09 131 7.768e-08 110 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 3.803e-09 368 8.195e-08 111 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 3.85e-09 143 8.222e-08 112 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN View Gene Set 6.094e-09 43 1.29e-07 113 Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757]. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_DN View Gene Set 6.702e-09 208 1.406e-07 114 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 6.89e-09 138 1.433e-07 115 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 7.961e-09 68 1.642e-07 116 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 8.363e-09 140 1.71e-07 117 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 View Gene Set 9.519e-09 681 1.93e-07 118 The 'group 3 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 1.012e-08 164 2.034e-07 119 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 1.217e-08 329 2.425e-07 120 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad BENPORATH_PROLIFERATION View Gene Set 1.526e-08 140 3.016e-07 121 Set 'Proliferation Cluster': genes defined in human breast tumor expression data. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 1.727e-08 155 3.386e-07 122 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN View Gene Set 1.985e-08 437 3.861e-07 123 Genes down-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 2.603e-08 268 5.021e-07 124 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad WINTER_HYPOXIA_METAGENE View Gene Set 2.632e-08 216 5.036e-07 125 Genes regulated by hypoxia based on literature searches. www.broad.mit.e...
Broad OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 2.773e-08 114 5.182e-07 126 Genes up-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...
Broad TOOKER_GEMCITABINE_RESISTANCE_UP View Gene Set 2.765e-08 76 5.182e-07 126 Up-regulated genes in Calu3 cells (non-small cell lung cancer NSCLC) resistant to gemcitabine [PubChem=3461] compared to the parental line sensitive to the drug. www.broad.mit.e...
Broad TOOKER_RESPONSE_TO_BEXAROTENE_DN View Gene Set 2.765e-08 76 5.182e-07 126 Down-regulated genes in Calu3 cells (non-small lung cancer cells NSCLC) resitant to gemcitabine [PubChem=3461] in response to bexarotene [PubChem=82146]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13 View Gene Set 3.515e-08 158 6.519e-07 129 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 13. www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP View Gene Set 3.717e-08 192 6.839e-07 130 Genes enriched in embryonic neural and hematopoietic stem cells. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 4.658e-08 504 8.505e-07 131 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_6HR_DN View Gene Set 4.861e-08 160 8.808e-07 132 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 6h. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES View Gene Set 5.457e-08 128 9.815e-07 133 Genes involved in DNA replication compiled manually by the authors. www.broad.mit.e...
Broad WANG_LMO4_TARGETS_DN View Gene Set 5.701e-08 327 1.018e-06 134 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 5.87e-08 418 1.04e-06 135 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 6.355e-08 92 1.118e-06 136 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_UP View Gene Set 6.854e-08 132 1.197e-06 137 The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 8.044e-08 317 1.394e-06 138 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE View Gene Set 9.039e-08 315 1.555e-06 139 Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells. www.broad.mit.e...
Broad LIU_VMYB_TARGETS_UP View Gene Set 9.245e-08 121 1.58e-06 140 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of v-MYB oncogenic varian of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_UP View Gene Set 9.433e-08 99 1.6e-06 141 Genes up-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN View Gene Set 9.617e-08 317 1.62e-06 142 The postradiation tumor escape signature: genes down-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN View Gene Set 1.162e-07 297 1.943e-06 143 Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown. www.broad.mit.e...
Broad CHAUHAN_RESPONSE_TO_METHOXYESTRADIOL_DN View Gene Set 1.193e-07 99 1.982e-06 144 Genes down-regulated by 2-methoxyestradiol (2ME2) [PubChem=1573] in the MM.1S cell line (multiple myeloma) sensitive to dexamethasone [PubChem=5743]. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_UP View Gene Set 1.209e-07 208 1.994e-06 145 Genes up-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK). www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 1.268e-07 399 2.078e-06 146 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 1.301e-07 205 2.117e-06 147 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad MATSUDA_NATURAL_KILLER_DIFFERENTIATION View Gene Set 1.667e-07 430 2.694e-06 148 Genes changed between developmental stages of Valpha14i natural killer T lymphocyte cells (NKT). www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP View Gene Set 1.79e-07 242 2.873e-06 149 Genes up-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION View Gene Set 1.839e-07 154 2.932e-06 150 Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population. www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX View Gene Set 1.905e-07 229 3.017e-06 151 Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 2.003e-07 212 3.152e-06 152 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP View Gene Set 2.191e-07 716 3.425e-06 153 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_SCC_UP View Gene Set 2.222e-07 80 3.451e-06 154 Genes up-regulated in SCC12B2 cells (squamous cell carcinoma) by UV-B irradiation. www.broad.mit.e...
Broad DER_IFN_GAMMA_RESPONSE_UP View Gene Set 2.36e-07 58 3.642e-06 155 Genes up-regulated in HT1080 (fibrosarcoma) cells by treatment with interferon gamma for 6 h. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 2.676e-07 201 4.103e-06 156 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad SENESE_HDAC1_AND_HDAC2_TARGETS_UP View Gene Set 2.924e-07 224 4.455e-06 157 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of both HDAC1 and HDAC2 [Gene ID=3065 3066] by RNAi. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP View Gene Set 3.121e-07 129 4.726e-06 158 Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL View Gene Set 3.224e-07 109 4.85e-06 159 Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_240_MCF10A View Gene Set 3.443e-07 57 5.147e-06 160 Genes whose expression peaked at 240 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_UP View Gene Set 3.538e-07 629 5.257e-06 161 Genes up-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad HUPER_BREAST_BASAL_VS_LUMINAL_DN View Gene Set 3.992e-07 59 5.894e-06 162 Genes down-regulated in basal mammary epithelial cells compared to the luminal ones. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 4.132e-07 171 6.064e-06 163 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 5.267e-07 471 7.682e-06 164 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN View Gene Set 5.315e-07 49 7.705e-06 165 Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_SKIN_UP View Gene Set 5.447e-07 168 7.849e-06 166 Genes up-regulated in lesional skin biopsies from mycosis fundoides patients compared to the normal skin samples. www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP View Gene Set 6.285e-07 195 9.002e-06 167 Genes up-regulated in monocytes by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN View Gene Set 6.411e-07 61 9.128e-06 168 Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 6.666e-07 139 9.435e-06 169 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad WINTER_HYPOXIA_UP View Gene Set 7.335e-07 85 1.032e-05 170 Genes up-regulated in head and neck tumor samples which clustered around known hypoxia genes. www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER View Gene Set 9.279e-07 167 1.298e-05 171 Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C7 View Gene Set 1.167e-06 69 1.623e-05 172 Cluster 7: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C0 View Gene Set 1.181e-06 106 1.632e-05 173 Cluster 0: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad RUTELLA_RESPONSE_TO_HGF_UP View Gene Set 1.216e-06 409 1.672e-05 174 Genes up-regulated in peripheral blood monocytes by HGF [Gene ID=3082]. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN View Gene Set 1.272e-06 135 1.738e-05 175 Genes whose expression profile is specific to Cluster IIa of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN View Gene Set 1.318e-06 76 1.792e-05 176 Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298]. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP View Gene Set 1.391e-06 375 1.88e-05 177 Genes up-regulated in nasopharyngeal carcinoma (NPC) positive for LMP1 [Gene ID=9260] a latent gene of Epstein-Barr virus (EBV). www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN View Gene Set 1.413e-06 140 1.898e-05 178 Genes down-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 1.445e-06 368 1.931e-05 179 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_DN View Gene Set 1.504e-06 90 1.999e-05 180 Genes down-regulated in rectal cancer patients resistant to radiotherapy (non-responders) relative to the sensitive ones (responders). www.broad.mit.e...
Broad WANG_CLIM2_TARGETS_DN View Gene Set 1.652e-06 166 2.183e-05 181 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express a dominant negative form of CLIM2 [Gene ID=8861] by a Tet Off system. www.broad.mit.e...
Broad HINATA_NFKB_TARGETS_KERATINOCYTE_UP View Gene Set 1.715e-06 71 2.253e-05 182 Genes up-regulated in primary keratinocytes by expression of p50 (NFKB1) and p65 (RELA) [Gene ID=4790 5970] components of NFKB. www.broad.mit.e...
Broad SENESE_HDAC2_TARGETS_UP View Gene Set 1.775e-06 109 2.321e-05 183 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC2 [Gene ID=3066] by RNAi. www.broad.mit.e...
Broad LIU_CMYB_TARGETS_UP View Gene Set 1.911e-06 158 2.471e-05 184 Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of CMYB [Gene ID=4602] off adenovirus vector. www.broad.mit.e...
Broad MENSE_HYPOXIA_UP View Gene Set 1.906e-06 94 2.471e-05 184 Hypoxia response genes in both astrocytes and HeLa cell line. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 2.166e-06 532 2.786e-05 186 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C6 View Gene Set 2.281e-06 39 2.917e-05 187 Cluster 6: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_UP View Gene Set 2.324e-06 94 2.956e-05 188 Genes up-regulated in apoptotic tissues (neuroepithelium) after MDM4 [Gene ID=4194] knockout. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 2.37e-06 583 2.999e-05 189 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_BASAL_VS_LULMINAL View Gene Set 2.451e-06 317 3.086e-05 190 Genes which best discriminated between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: basal (ESR1- AR-) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad HOLLMAN_APOPTOSIS_VIA_CD40_UP View Gene Set 2.62e-06 193 3.282e-05 191 Genes up-regulated in DLBCL (diffuse large B-cell lymphoma) cell lines sensitive to stimulation of CD40 [Gene ID=958] relative to the resistant ones. www.broad.mit.e...
Broad SANA_RESPONSE_TO_IFNG_DN View Gene Set 2.708e-06 79 3.374e-05 192 Genes down-regulated in five primary endothelial cell types (lung aortic iliac dermal and colon) by IFNG [Gene ID=3458]. www.broad.mit.e...
Broad SASAKI_ADULT_T_CELL_LEUKEMIA View Gene Set 2.767e-06 137 3.429e-05 193 Genes up-regulated in adult T-cell leukemia (ATL) cells compared to T lymphocytes from healthy controls. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN View Gene Set 2.799e-06 76 3.451e-05 194 Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...
Broad DER_IFN_BETA_RESPONSE_UP View Gene Set 2.823e-06 82 3.463e-05 195 Genes up-regulated in HT1080 (fibrosarcoma) cells by treatment with interferon beta for 6 h. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 2.854e-06 92 3.483e-05 196 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP View Gene Set 3.012e-06 45 3.658e-05 197 Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone. www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 3.182e-06 138 3.825e-05 198 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN View Gene Set 3.178e-06 121 3.825e-05 198 Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_DN View Gene Set 3.221e-06 607 3.852e-05 200 Transcripts depleted from pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_SPLICEOSOME View Gene Set 3.183e-11 118 5.921e-09 1 Spliceosome www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 4.037e-08 98 3.755e-06 2 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 5.069e-06 36 0.0003143 3 DNA replication www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION View Gene Set 1.936e-05 59 0.0009002 4 RNA degradation www.broad.mit.e...
Broad KEGG_RNA_POLYMERASE View Gene Set 6.926e-05 29 0.002147 5 RNA polymerase www.broad.mit.e...
Broad KEGG_CELL_CYCLE View Gene Set 5.804e-05 128 0.002147 5 Cell cycle www.broad.mit.e...
Broad KEGG_PURINE_METABOLISM View Gene Set 8.347e-05 157 0.002218 7 Purine metabolism www.broad.mit.e...
Broad KEGG_HUNTINGTONS_DISEASE View Gene Set 0.0002329 185 0.005414 8 Huntington's disease www.broad.mit.e...
Broad KEGG_PROTEIN_EXPORT View Gene Set 0.0005434 24 0.01123 9 Protein export www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR View Gene Set 0.001191 35 0.02214 10 Base excision repair www.broad.mit.e...
Broad KEGG_OXIDATIVE_PHOSPHORYLATION View Gene Set 0.001813 135 0.02594 11 Oxidative phosphorylation www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION View Gene Set 0.00171 28 0.02594 11 Homologous recombination www.broad.mit.e...
Broad KEGG_PARKINSONS_DISEASE View Gene Set 0.001605 133 0.02594 11 Parkinson's disease www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 0.003279 138 0.04356 14 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_ONE_CARBON_POOL_BY_FOLATE View Gene Set 0.003854 17 0.04779 15 One carbon pool by folate www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 2.783e-10 124 5.982e-08 1 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 2.018e-10 415 5.982e-08 1 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 6.438e-10 128 9.228e-08 3 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 3.221e-09 97 3.462e-07 4 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 8.726e-09 306 6.903e-07 5 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 9.632e-09 142 6.903e-07 5 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 2.373e-08 95 1.458e-06 7 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 7.091e-08 188 3.811e-06 8 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 2.297e-06 102 9.876e-05 9 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS View Gene Set 2.289e-06 215 9.876e-05 9 Genes involved in Metabolism of proteins www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION View Gene Set 3.538e-06 120 0.0001383 11 Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 4.078e-06 77 0.0001461 12 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 6.593e-06 45 0.0002181 13 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY View Gene Set 1.094e-05 38 0.0003359 14 Genes involved in mRNA Splicing - Minor Pathway www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 1.317e-05 30 0.0003776 15 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 2.967e-05 103 0.0007973 16 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 3.183e-05 103 0.0008052 17 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC View Gene Set 7.341e-05 28 0.001754 18 Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE View Gene Set 8.143e-05 82 0.001843 19 Genes involved in RNA PolymerasePromoter Clearance www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 0.0001319 90 0.002836 20 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 0.0001615 84 0.003306 21 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_ELECTRON_TRANSPORT_CHAIN View Gene Set 0.0002024 75 0.003956 22 Genes involved in Electron Transport Chain www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 0.0002343 37 0.00438 23 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 0.0002845 183 0.004893 24 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_ELONGATION View Gene Set 0.0002776 41 0.004893 24 Genes involved in HIV-1 Transcription Elongation www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 0.0003424 89 0.005663 26 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 0.0003748 31 0.005756 27 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 0.0003645 50 0.005756 27 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 0.0003956 102 0.005867 29 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA View Gene Set 0.0004705 21 0.006744 30 Genes involved in Deadenylation of mRNA www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 0.0005695 28 0.00742 31 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION View Gene Set 0.0005536 83 0.00742 31 Genes involved in RNA Polymerase II Transcription www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 0.0005635 42 0.00742 31 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_TAT_MEDIATED_HIV1_ELONGATION_ARREST_AND_RECOVERY View Gene Set 0.000701 30 0.008753 34 Genes involved in Tat-mediated HIV-1 elongation arrest and recovery www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 0.0007124 120 0.008753 34 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION View Gene Set 0.0007355 72 0.008785 36 Genes involved in Centrosome maturation www.broad.mit.e...
Broad REACTOME_FORMATION_OF_TUBULIN_FOLDING_INTERMEDIATES_BY_CCT_TRIC View Gene Set 0.000858 22 0.009517 37 Genes involved in Formation of tubulin folding intermediates by CCT/TriC www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS View Gene Set 0.0008632 49 0.009517 37 Genes involved in Packaging Of Telomere Ends www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND View Gene Set 0.0008522 10 0.009517 37 Genes involved in Removal of the Flap Intermediate from the C-strand www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING View Gene Set 0.0009443 59 0.01015 40 Genes involved in RNA Polymerase I Promoter Opening www.broad.mit.e...
Broad REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES View Gene Set 0.001107 62 0.01161 41 Genes involved in Loss of Nlp from mitotic centrosomes www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 0.001208 71 0.01237 42 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 0.001311 157 0.01311 43 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 0.00157 43 0.01535 44 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.001799 21 0.01719 45 Genes involved in Double-Strand Break Repair www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 0.001905 76 0.0173 46 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE View Gene Set 0.001871 137 0.0173 46 Genes involved in Influenza Life Cycle www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE View Gene Set 0.001949 14 0.0173 46 Genes involved in Removal of the Flap Intermediate www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION_FROM_TYPE_2_PROMOTER View Gene Set 0.001971 20 0.0173 46 Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter www.broad.mit.e...
Broad REACTOME_CHAPERONIN_MEDIATED_PROTEIN_FOLDING View Gene Set 0.002071 50 0.01781 50 Genes involved in Chaperonin-mediated protein folding www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS View Gene Set 0.002128 54 0.01794 51 Genes involved in Golgi Associated Vesicle Biogenesis www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT View Gene Set 0.002484 106 0.02054 52 Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit www.broad.mit.e...
Broad REACTOME_GLUCOSE_REGULATION_OF_INSULIN_SECRETION View Gene Set 0.0027 161 0.0219 53 Genes involved in Glucose Regulation of Insulin Secretion www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE View Gene Set 0.002838 20 0.0226 54 Genes involved in RNA Polymerase I Promoter Escape www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 0.002972 11 0.02324 55 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION View Gene Set 0.003391 29 0.02558 56 Genes involved in RNA Polymerase III Transcription Initiation www.broad.mit.e...
Broad REACTOME_SMOOTH_MUSCLE_CONTRACTION View Gene Set 0.003376 24 0.02558 56 Genes involved in Smooth Muscle Contraction www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 0.003548 33 0.02586 58 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX View Gene Set 0.003499 32 0.02586 58 Genes involved in Formation of the Early Elongation Complex www.broad.mit.e...
Broad REACTOME_DIABETES_PATHWAYS View Gene Set 0.00381 383 0.0273 60 Genes involved in Diabetes pathways www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 0.004095 32 0.02886 61 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 0.004189 31 0.02905 62 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR View Gene Set 0.004385 15 0.02946 63 Genes involved in Homologous Recombination Repair www.broad.mit.e...
Broad REACTOME_MRNA_PROCESSING View Gene Set 0.004341 32 0.02946 63 Genes involved in mRNA Processing www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING View Gene Set 0.004548 25 0.03008 65 Genes involved in mRNA 3-end processing www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME View Gene Set 0.004724 59 0.03078 66 Genes involved in Transcription of the HIV genome www.broad.mit.e...
Broad REACTOME_MEMBRANE_TRAFFICKING View Gene Set 0.004864 78 0.03122 67 Genes involved in Membrane Trafficking www.broad.mit.e...
Broad REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT View Gene Set 0.004993 23 0.03135 68 Genes involved in Abortive elongation of HIV-1 transcript in the absence of Tat www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 0.005031 30 0.03135 68 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_CHAIN_ELONGATION View Gene Set 0.005226 12 0.03211 70 Genes involved in RNA Polymerase III Chain Elongation www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION View Gene Set 0.00531 34 0.03216 71 Genes involved in RNA PolymeraseChain Elongation www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING View Gene Set 0.005679 61 0.03392 72 Genes involved in Clathrin derived vesicle budding www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 0.005832 63 0.03435 73 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER View Gene Set 0.005913 22 0.03436 74 Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 0.006467 110 0.03704 75 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS View Gene Set 0.006546 11 0.03704 75 Genes involved in Purine ribonucleoside monophosphate biosynthesis www.broad.mit.e...
Broad REACTOME_PURINE_METABOLISM View Gene Set 0.006877 30 0.03791 77 Genes involved in Purine metabolism www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM View Gene Set 0.006791 22 0.03791 77 Genes involved in Pyrimidine metabolism www.broad.mit.e...
Broad REACTOME_BASE_EXCISION_REPAIR View Gene Set 0.007275 18 0.0396 79 Genes involved in Base Excision Repair www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER View Gene Set 0.007807 44 0.04196 80 Genes involved in Transcription-coupled NER (TC-NER) www.broad.mit.e...
Broad REACTOME_CHOLESTEROL_BIOSYNTHESIS View Gene Set 0.008207 21 0.04357 81 Genes involved in Cholesterol biosynthesis www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION View Gene Set 0.008435 20 0.04398 82 Genes involved in Mitochondrial tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE View Gene Set 0.008489 26 0.04398 82 Genes involved in RNA Pol II CTD phosphorylation and interaction with CE www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS View Gene Set 0.009289 18 0.04755 84 Genes involved in MicroRNA biogenesis www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S View Gene Set 0.009809 22 0.04919 85 Genes involved in E2F transcriptional targets at G1/S www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 0.009837 92 0.04919 85 Genes involved in Mitotic Prometaphase www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad ACCAAAG MIR-9 View Gene Set 0.0004273 428 0.03148 1 Targets of MicroRNA ACCAAAG MIR-9 www.broad.mit.e... MIR-9...
Broad ACTGCCT MIR-34B View Gene Set 0.0004193 190 0.03148 1 Targets of MicroRNA ACTGCCT MIR-34B www.broad.mit.e... MIR-34B...
Broad ATTCTTT MIR-186 View Gene Set 0.0004035 232 0.03148 1 Targets of MicroRNA ATTCTTT MIR-186 www.broad.mit.e... MIR-186...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GGGCGGR_V$SP1_Q6 View Gene Set 5.526e-10 2120 3.398e-07 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02 View Gene Set 8.657e-09 784 2.662e-06 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 8.266e-07 580 0.0001695 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$USF_02 View Gene Set 9.647e-06 197 0.001483 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRNCACGTGNYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NRF1_Q6 View Gene Set 2.16e-05 151 0.002657 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGCATGCGCR which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01 View Gene Set 4.431e-05 122 0.004041 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B View Gene Set 4.599e-05 512 0.004041 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$CREB_02 View Gene Set 5.423e-05 185 0.004169 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGNTGACGTNN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$USF_01 View Gene Set 0.0002001 186 0.01119 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SREBP1_01 View Gene Set 0.0001853 133 0.01119 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 0.0001779 167 0.01119 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$GABP_B View Gene Set 0.0003495 162 0.01791 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$E2F_Q4 View Gene Set 0.0004902 166 0.0201 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6_01 View Gene Set 0.0004591 167 0.0201 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.000457 289 0.0201 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$YY1_Q6 View Gene Set 0.0005335 166 0.02051 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F1_Q3 View Gene Set 0.0006096 176 0.02076 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F_03 View Gene Set 0.0006412 171 0.02076 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor www.broad.mit.e...
Broad RRCCGTTA_UNKNOWN View Gene Set 0.0006214 53 0.02076 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RRCCGTTA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 0.000805 169 0.0225 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 0.000805 169 0.0225 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 0.000805 169 0.0225 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F_02 View Gene Set 0.0009056 169 0.02403 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN View Gene Set 0.0009379 130 0.02403 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 0.001016 165 0.02498 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYC_Q2 View Gene Set 0.001875 135 0.04138 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTGS which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad V$E2F_Q4_01 View Gene Set 0.001884 171 0.04138 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1_Q6_01 View Gene Set 0.001813 177 0.04138 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad KTGGYRSGAA_UNKNOWN View Gene Set 0.002062 53 0.04374 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KTGGYRSGAA. Motif does not match any known transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MORF_BUB3 View Gene Set 1.784e-28 256 7.619e-26 1 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 1.104e-27 316 2.356e-25 2 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 1.212e-23 220 1.725e-21 3 Neighborhood of EIF3S2 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 1.028e-22 256 1.097e-20 4 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 3.448e-22 276 2.945e-20 5 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_DEK View Gene Set 4.979e-20 229 3.543e-18 6 Neighborhood of DEK www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 3.427e-19 222 2.09e-17 7 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 9.791e-19 256 5.226e-17 8 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 5.804e-18 210 2.754e-16 9 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 9.698e-18 247 4.141e-16 10 Neighborhood of SOD1 www.broad.mit.e...
Broad MORF_FBL View Gene Set 1.367e-16 121 5.307e-15 11 Neighborhood of FBL www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 4.178e-16 173 1.487e-14 12 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_AATF View Gene Set 6.771e-16 179 2.224e-14 13 Neighborhood of AATF www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 1.488e-15 174 4.537e-14 14 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 4.823e-15 178 1.373e-13 15 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 2.294e-14 175 6.122e-13 16 Neighborhood of DAP3 www.broad.mit.e...
Broad MORF_RAN View Gene Set 5.509e-14 242 1.384e-12 17 Neighborhood of RAN www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 1.218e-13 145 2.738e-12 18 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 1.167e-13 150 2.738e-12 18 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 1.568e-13 155 3.349e-12 20 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 8.85e-12 105 1.799e-10 21 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 9.658e-12 208 1.875e-10 22 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 3.956e-11 157 7.039e-10 23 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 3.951e-11 145 7.039e-10 23 Neighborhood of PPP1CA www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 4.686e-11 175 8.004e-10 25 Neighborhood of SKP1A www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 5.85e-11 137 9.608e-10 26 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_ERH View Gene Set 7.404e-10 103 1.171e-08 27 Neighborhood of ERH www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 9.096e-10 108 1.387e-08 28 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 1.216e-09 71 1.791e-08 29 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 1.415e-09 79 2.015e-08 30 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 1.664e-09 98 2.292e-08 31 Neighborhood of PAPSS1 www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 2.137e-09 123 2.852e-08 32 Neighborhood of MAP2K2 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 2.296e-09 149 2.971e-08 33 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 3.724e-09 197 4.677e-08 34 Neighborhood of AP2M1 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 4.069e-09 170 4.964e-08 35 Neighborhood of RPA2 www.broad.mit.e...
Broad MORF_EI24 View Gene Set 4.473e-09 136 5.306e-08 36 Neighborhood of EI24 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 4.958e-09 58 5.722e-08 37 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 6.059e-09 72 6.808e-08 38 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 9.598e-09 63 1.051e-07 39 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 1.031e-08 202 1.101e-07 40 Neighborhood of PRKAG1 www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 1.157e-08 90 1.205e-07 41 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 1.245e-08 196 1.265e-07 42 Neighborhood of RAC1 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 1.523e-08 47 1.513e-07 43 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 1.774e-08 94 1.722e-07 44 Neighborhood of RAD54L www.broad.mit.e...
Broad GCM_CSNK2B View Gene Set 3.441e-08 88 3.265e-07 45 Neighborhood of CSNK2B www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 3.928e-08 73 3.646e-07 46 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_UNG View Gene Set 7.065e-08 65 6.418e-07 47 Neighborhood of UNG www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 1.531e-07 119 1.362e-06 48 Neighborhood of AP3D1 www.broad.mit.e...
Broad GNF2_FBL View Gene Set 1.827e-07 119 1.592e-06 49 Neighborhood of FBL www.broad.mit.e...
Broad MORF_NPM1 View Gene Set 2.529e-07 152 2.16e-06 50 Neighborhood of NPM1 www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 3.203e-07 113 2.682e-06 51 Neighborhood of ACTG1 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 3.996e-07 78 3.281e-06 52 Neighborhood of RAN www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 4.235e-07 88 3.412e-06 53 Neighborhood of PPP6C www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 4.857e-07 57 3.771e-06 54 Neighborhood of TERF1 www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 4.817e-07 95 3.771e-06 54 Neighborhood of MTA1 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 5.116e-07 162 3.901e-06 56 Neighborhood of PSMC1 www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 5.696e-07 102 4.267e-06 57 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 6.017e-07 110 4.43e-06 58 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 6.273e-07 159 4.54e-06 59 Neighborhood of RAD23B www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 6.379e-07 82 4.54e-06 60 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 6.703e-07 67 4.692e-06 61 Neighborhood of CDC16 www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 7.842e-07 58 5.401e-06 62 Neighborhood of FEN1 www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 1.464e-06 220 9.925e-06 63 Neighborhood of DDB1 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 1.872e-06 75 1.249e-05 64 Neighborhood of SMC4L1 www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 1.905e-06 93 1.251e-05 65 Neighborhood of PTPN11 www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 1.943e-06 79 1.257e-05 66 Neighborhood of PRDX3 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 2.297e-06 120 1.464e-05 67 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 2.383e-06 94 1.496e-05 68 Neighborhood of RAF1 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 2.787e-06 59 1.713e-05 69 Neighborhood of CBFB www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 2.809e-06 36 1.713e-05 69 Neighborhood of MLH1 www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 2.896e-06 57 1.741e-05 71 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 3.123e-06 179 1.852e-05 72 Neighborhood of RAB1A www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 3.391e-06 98 1.983e-05 73 Neighborhood of DAP3 www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 5.605e-06 76 3.191e-05 74 Neighborhood of EIF4E www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 5.595e-06 108 3.191e-05 74 Neighborhood of NPM1 www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 9.518e-06 54 5.348e-05 76 Neighborhood of RBBP6 www.broad.mit.e...
Broad MORF_EIF4A2 View Gene Set 1.001e-05 120 5.551e-05 77 Neighborhood of EIF4A2 www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 1.638e-05 133 8.968e-05 78 Neighborhood of PRKAR1A www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 1.682e-05 62 9.093e-05 79 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_SART1 View Gene Set 1.797e-05 55 9.591e-05 80 Neighborhood of SART1 www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 2.06e-05 32 0.0001086 81 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 2.308e-05 52 0.0001202 82 Neighborhood of KPNB1 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 2.91e-05 56 0.0001485 83 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 2.922e-05 51 0.0001485 83 Neighborhood of MCM5 www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 3.002e-05 57 0.0001508 85 Neighborhood of NPM1 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 3.434e-05 47 0.0001705 86 Neighborhood of PPP1CC www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 3.559e-05 52 0.0001747 87 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 3.63e-05 100 0.0001761 88 Neighborhood of PSMC2 www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 3.926e-05 71 0.0001883 89 Neighborhood of BMI1 www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 4.534e-05 54 0.0002151 90 Neighborhood of DEAF1 www.broad.mit.e...
Broad MORF_ACTG1 View Gene Set 5.174e-05 134 0.0002428 91 Neighborhood of ACTG1 www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 5.672e-05 49 0.0002633 92 Neighborhood of FEN1 www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 5.827e-05 144 0.0002675 93 Neighborhood of MAP4K4 www.broad.mit.e...
Broad MORF_PHB View Gene Set 5.948e-05 112 0.0002702 94 Neighborhood of PHB www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 6.599e-05 52 0.0002966 95 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_GMPS View Gene Set 6.941e-05 48 0.0003073 96 Neighborhood of GMPS www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 6.982e-05 61 0.0003073 96 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 7.736e-05 38 0.0003371 98 Neighborhood of RFC3 www.broad.mit.e...
Broad MORF_PPP2R4 View Gene Set 8.011e-05 44 0.0003455 99 Neighborhood of PPP2R4 www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 9.891e-05 62 0.0004181 100 Neighborhood of CUL1 www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 9.823e-05 34 0.0004181 100 Neighborhood of RAF1 www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 0.0001121 52 0.0004693 102 Neighborhood of CDC20 www.broad.mit.e...
Broad GNF2_NS View Gene Set 0.0001226 35 0.0005082 103 Neighborhood of NS www.broad.mit.e...
Broad MORF_RAB6A View Gene Set 0.0001275 63 0.0005237 104 Neighborhood of RAB6A www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 0.0001311 85 0.000533 105 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 0.000143 55 0.0005761 106 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 0.0001494 53 0.0005963 107 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 0.0001534 26 0.0006064 108 Neighborhood of MSH2 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 0.0001571 36 0.0006154 109 Neighborhood of RRM2 www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 0.0001613 56 0.0006261 110 Neighborhood of CDC2 www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 0.0001722 76 0.0006624 111 Neighborhood of MBD4 www.broad.mit.e...
Broad MORF_NME2 View Gene Set 0.0001816 145 0.0006863 112 Neighborhood of NME2 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 0.0001802 39 0.0006863 112 Neighborhood of DENR www.broad.mit.e...
Broad GNF2_EIF3S6 View Gene Set 0.0001913 109 0.0007164 114 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 0.0002081 76 0.0007728 115 Neighborhood of CCNI www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 0.0002129 41 0.0007836 116 Neighborhood of GSPT1 www.broad.mit.e...
Broad MORF_ATOX1 View Gene Set 0.000217 72 0.0007877 117 Neighborhood of ATOX1 www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 0.0002177 50 0.0007877 117 Neighborhood of MCM4 www.broad.mit.e...
Broad GNF2_SERPINB5 View Gene Set 0.000262 25 0.0009402 119 Neighborhood of SERPINB5 www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 0.0002738 33 0.0009744 120 Neighborhood of UBE2I www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 0.0002952 62 0.001042 121 Neighborhood of CCNA2 www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 0.0003137 32 0.001098 122 Neighborhood of ELAC2 www.broad.mit.e...
Broad GCM_CRKL View Gene Set 0.0003468 50 0.001204 123 Neighborhood of CRKL www.broad.mit.e...
Broad GNF2_ST13 View Gene Set 0.0003683 56 0.001268 124 Neighborhood of ST13 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 0.0005834 46 0.001993 125 Neighborhood of BUB1B www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 0.0006504 76 0.002204 126 Neighborhood of PSME1 www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 0.0007231 30 0.002421 127 Neighborhood of MSH6 www.broad.mit.e...
Broad GNF2_CDH3 View Gene Set 0.0007259 24 0.002421 127 Neighborhood of CDH3 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 0.0008895 99 0.002944 129 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_USP5 View Gene Set 0.0009361 46 0.003075 130 Neighborhood of USP5 www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.0009467 33 0.003086 131 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GNF2_TTK View Gene Set 0.001022 34 0.003307 132 Neighborhood of TTK www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 0.00103 45 0.003307 133 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 0.00116 37 0.003695 134 Neighborhood of CENPE www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 0.001213 48 0.003837 135 Neighborhood of BAG5 www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 0.001357 36 0.004259 136 Neighborhood of CKS1B www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 0.001428 143 0.004451 137 Neighborhood of RAB10 www.broad.mit.e...
Broad GNF2_MMP1 View Gene Set 0.001589 32 0.004917 138 Neighborhood of MMP1 www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 0.00172 61 0.005284 139 Neighborhood of BUB1B www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 0.001764 28 0.005316 140 Neighborhood of H2AFX www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 0.001768 45 0.005316 140 Neighborhood of CKS2 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 0.001746 26 0.005316 140 Neighborhood of MKI67 www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 0.001888 50 0.005639 143 Neighborhood of SNRP70 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 0.001911 45 0.005667 144 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 0.001926 29 0.005671 145 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_TDG View Gene Set 0.001948 23 0.005698 146 Neighborhood of TDG www.broad.mit.e...
Broad MORF_RAB5A View Gene Set 0.002349 83 0.006822 147 Neighborhood of RAB5A www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 0.002384 43 0.006879 148 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_INPP5D View Gene Set 0.002722 38 0.007801 149 Neighborhood of INPP5D www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 0.002965 39 0.008441 150 Neighborhood of SIRT2 www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 0.003103 68 0.008776 151 Neighborhood of BMPR2 www.broad.mit.e...
Broad MORF_DAP View Gene Set 0.003291 72 0.009246 152 Neighborhood of DAP www.broad.mit.e...
Broad GNF2_HLA-C View Gene Set 0.003406 44 0.009507 153 Neighborhood of HLA-C www.broad.mit.e...
Broad MORF_PPP2R5E View Gene Set 0.003653 76 0.01013 154 Neighborhood of PPP2R5E www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.003878 138 0.01068 155 Neighborhood of MYST2 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 0.00393 69 0.01076 156 Neighborhood of SP3 www.broad.mit.e...
Broad GCM_NF2 View Gene Set 0.004067 235 0.01106 157 Neighborhood of NF2 www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.004493 100 0.01214 158 Neighborhood of DFFA www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 0.004546 35 0.01221 159 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_STAT6 View Gene Set 0.006246 75 0.01667 160 Neighborhood of STAT6 www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.006805 24 0.01805 161 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GNF2_CD53 View Gene Set 0.007028 54 0.01852 162 Neighborhood of CD53 www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 0.007315 26 0.01916 163 Neighborhood of CBFB www.broad.mit.e...
Broad GCM_HDAC1 View Gene Set 0.007575 30 0.01972 164 Neighborhood of HDAC1 www.broad.mit.e...
Broad GNF2_MSN View Gene Set 0.007642 24 0.01978 165 Neighborhood of MSN www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.008462 44 0.02177 166 Neighborhood of UBE2A www.broad.mit.e...
Broad GCM_PFN1 View Gene Set 0.009334 47 0.02387 167 Neighborhood of PFN1 www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 0.01036 22 0.02634 168 Neighborhood of BUB3 www.broad.mit.e...
Broad GNF2_PTX3 View Gene Set 0.0114 36 0.02881 169 Neighborhood of PTX3 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 0.01151 65 0.02892 170 Neighborhood of CCNF www.broad.mit.e...
Broad GCM_ZNF198 View Gene Set 0.01205 98 0.03008 171 Neighborhood of ZNF198 www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 0.01271 93 0.03156 172 Neighborhood of BECN1 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.01468 30 0.03624 173 Neighborhood of RAD21 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 0.01603 30 0.03933 174 Neighborhood of SMC2L1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 0.0168 49 0.04076 175 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_RAB11A View Gene Set 0.01678 53 0.04076 175 Neighborhood of RAB11A www.broad.mit.e...
Broad GNF2_VAV1 View Gene Set 0.01788 34 0.04314 177 Neighborhood of VAV1 www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 0.02072 98 0.04969 178 Neighborhood of RFC1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_3 View Gene Set 1.164e-26 374 5.286e-24 1 Genes in module_3 www.broad.mit.e...
Broad module_17 View Gene Set 7.748e-24 351 1.759e-21 2 Genes in module_17 www.broad.mit.e...
Broad module_8 View Gene Set 1.45e-17 403 2.195e-15 3 Genes in module_8 www.broad.mit.e...
Broad module_52 View Gene Set 2.296e-17 415 2.606e-15 4 Genes in module_52 www.broad.mit.e...
Broad module_18 View Gene Set 2.654e-16 434 2.41e-14 5 Genes in module_18 www.broad.mit.e...
Broad module_126 View Gene Set 3.398e-12 173 2.571e-10 6 Genes in module_126 www.broad.mit.e...
Broad module_54 View Gene Set 8.351e-11 242 5.416e-09 7 Genes in module_54 www.broad.mit.e...
Broad module_198 View Gene Set 1.8e-10 288 1.022e-08 8 Genes in module_198 www.broad.mit.e...
Broad module_98 View Gene Set 1.928e-09 375 8.755e-08 9 Genes in module_98 www.broad.mit.e...
Broad module_105 View Gene Set 1.837e-09 192 8.755e-08 9 Genes in module_105 www.broad.mit.e...
Broad module_15 View Gene Set 4.453e-09 347 1.826e-07 11 Genes in module_15 www.broad.mit.e...
Broad module_32 View Gene Set 4.826e-09 227 1.826e-07 11 Genes in module_32 www.broad.mit.e...
Broad module_151 View Gene Set 1.224e-08 297 4.276e-07 13 Genes in module_151 www.broad.mit.e...
Broad module_114 View Gene Set 4.241e-08 314 1.375e-06 14 Genes in module_114 www.broad.mit.e...
Broad module_72 View Gene Set 5.595e-08 293 1.667e-06 15 Genes in module_72 www.broad.mit.e...
Broad module_152 View Gene Set 6.244e-08 121 1.667e-06 15 Genes in module_152 www.broad.mit.e...
Broad module_252 View Gene Set 6.151e-08 224 1.667e-06 15 Genes in module_252 www.broad.mit.e...
Broad module_118 View Gene Set 1.771e-07 393 4.414e-06 18 Genes in module_118 www.broad.mit.e...
Broad module_159 View Gene Set 1.944e-07 81 4.414e-06 18 Genes in module_159 www.broad.mit.e...
Broad module_321 View Gene Set 1.865e-07 107 4.414e-06 18 Genes in module_321 www.broad.mit.e...
Broad module_61 View Gene Set 5.231e-07 50 1.079e-05 21 Genes in module_61 www.broad.mit.e...
Broad module_83 View Gene Set 5.021e-07 296 1.079e-05 21 Genes in module_83 www.broad.mit.e...
Broad module_177 View Gene Set 7.8e-07 101 1.54e-05 23 Genes in module_177 www.broad.mit.e...
Broad module_357 View Gene Set 2.344e-06 78 4.434e-05 24 Genes in module_357 www.broad.mit.e...
Broad module_297 View Gene Set 1.066e-05 78 0.0001935 25 Genes in module_297 www.broad.mit.e...
Broad module_154 View Gene Set 3.007e-05 73 0.0005137 26 Genes in module_154 www.broad.mit.e...
Broad module_239 View Gene Set 3.055e-05 112 0.0005137 26 Genes in module_239 www.broad.mit.e...
Broad module_124 View Gene Set 3.902e-05 92 0.0006327 28 Genes in module_124 www.broad.mit.e...
Broad module_323 View Gene Set 9.205e-05 54 0.001441 29 Genes in module_323 www.broad.mit.e...
Broad module_158 View Gene Set 0.0001075 41 0.001627 30 Genes in module_158 www.broad.mit.e...
Broad module_16 View Gene Set 0.0001157 495 0.001649 31 Genes in module_16 www.broad.mit.e...
Broad module_197 View Gene Set 0.0001162 170 0.001649 31 Genes in module_197 www.broad.mit.e...
Broad module_392 View Gene Set 0.0001244 18 0.001711 33 Genes in module_392 www.broad.mit.e...
Broad module_397 View Gene Set 0.0001317 114 0.001758 34 Genes in module_397 www.broad.mit.e...
Broad module_244 View Gene Set 0.0001539 182 0.001996 35 Genes in module_244 www.broad.mit.e...
Broad module_219 View Gene Set 0.0001799 26 0.002268 36 Genes in module_219 www.broad.mit.e...
Broad module_125 View Gene Set 0.0001912 42 0.002347 37 Genes in module_125 www.broad.mit.e...
Broad module_183 View Gene Set 0.0002212 52 0.002574 38 Genes in module_183 www.broad.mit.e...
Broad module_567 View Gene Set 0.0002196 90 0.002574 38 Genes in module_567 www.broad.mit.e...
Broad module_57 View Gene Set 0.0002551 54 0.002895 40 Genes in module_57 www.broad.mit.e...
Broad module_53 View Gene Set 0.0002954 389 0.003272 41 Genes in module_53 www.broad.mit.e...
Broad module_86 View Gene Set 0.0003402 43 0.003677 42 Genes in module_86 www.broad.mit.e...
Broad module_363 View Gene Set 0.0003761 48 0.003971 43 Genes in module_363 www.broad.mit.e...
Broad module_155 View Gene Set 0.000387 25 0.003993 44 Genes in module_155 www.broad.mit.e...
Broad module_388 View Gene Set 0.0004759 17 0.004801 45 Genes in module_388 www.broad.mit.e...
Broad module_62 View Gene Set 0.0005099 88 0.004992 46 Genes in module_62 www.broad.mit.e...
Broad module_273 View Gene Set 0.0005168 50 0.004992 46 Genes in module_273 www.broad.mit.e...
Broad module_149 View Gene Set 0.0006544 36 0.00619 48 Genes in module_149 www.broad.mit.e...
Broad module_182 View Gene Set 0.0008209 94 0.007453 49 Genes in module_182 www.broad.mit.e...
Broad module_457 View Gene Set 0.0008172 9 0.007453 49 Genes in module_457 www.broad.mit.e...
Broad module_5 View Gene Set 0.00124 420 0.01104 51 Genes in module_5 www.broad.mit.e...
Broad module_308 View Gene Set 0.001344 66 0.01173 52 Genes in module_308 www.broad.mit.e...
Broad module_356 View Gene Set 0.001603 141 0.01373 53 Genes in module_356 www.broad.mit.e...
Broad module_1 View Gene Set 0.001675 355 0.01383 54 Genes in module_1 www.broad.mit.e...
Broad module_332 View Gene Set 0.001674 35 0.01383 54 Genes in module_332 www.broad.mit.e...
Broad module_35 View Gene Set 0.001741 16 0.01411 56 Genes in module_35 www.broad.mit.e...
Broad module_312 View Gene Set 0.001786 45 0.01423 57 Genes in module_312 www.broad.mit.e...
Broad module_509 View Gene Set 0.001878 14 0.0147 58 Genes in module_509 www.broad.mit.e...
Broad module_261 View Gene Set 0.002034 91 0.01565 59 Genes in module_261 www.broad.mit.e...
Broad module_272 View Gene Set 0.002157 12 0.01632 60 Genes in module_272 www.broad.mit.e...
Broad module_245 View Gene Set 0.002255 26 0.01678 61 Genes in module_245 www.broad.mit.e...
Broad module_87 View Gene Set 0.002711 44 0.01985 62 Genes in module_87 www.broad.mit.e...
Broad module_121 View Gene Set 0.003358 98 0.02411 63 Genes in module_121 www.broad.mit.e...
Broad module_503 View Gene Set 0.003399 106 0.02411 63 Genes in module_503 www.broad.mit.e...
Broad module_144 View Gene Set 0.003453 8 0.02412 65 Genes in module_144 www.broad.mit.e...
Broad module_337 View Gene Set 0.003555 59 0.02446 66 Genes in module_337 www.broad.mit.e...
Broad module_102 View Gene Set 0.004017 18 0.02722 67 Genes in module_102 www.broad.mit.e...
Broad module_97 View Gene Set 0.004093 91 0.02727 68 Genes in module_97 www.broad.mit.e...
Broad module_110 View Gene Set 0.004204 15 0.02727 68 Genes in module_110 www.broad.mit.e...
Broad module_576 View Gene Set 0.004193 104 0.02727 68 Genes in module_576 www.broad.mit.e...
Broad module_195 View Gene Set 0.004432 138 0.02795 71 Genes in module_195 www.broad.mit.e...
Broad module_349 View Gene Set 0.004425 17 0.02795 71 Genes in module_349 www.broad.mit.e...
Broad module_403 View Gene Set 0.004663 44 0.029 73 Genes in module_403 www.broad.mit.e...
Broad module_516 View Gene Set 0.00489 16 0.03 74 Genes in module_516 www.broad.mit.e...
Broad module_352 View Gene Set 0.005079 17 0.03075 75 Genes in module_352 www.broad.mit.e...
Broad module_299 View Gene Set 0.005843 33 0.03445 76 Genes in module_299 www.broad.mit.e...
Broad module_444 View Gene Set 0.005837 18 0.03445 76 Genes in module_444 www.broad.mit.e...
Broad module_275 View Gene Set 0.006005 16 0.03451 78 Genes in module_275 www.broad.mit.e...
Broad module_450 View Gene Set 0.005946 9 0.03451 78 Genes in module_450 www.broad.mit.e...
Broad module_14 View Gene Set 0.006173 15 0.03456 80 Genes in module_14 www.broad.mit.e...
Broad module_119 View Gene Set 0.006247 135 0.03456 80 Genes in module_119 www.broad.mit.e...
Broad module_432 View Gene Set 0.006319 15 0.03456 80 Genes in module_432 www.broad.mit.e...
Broad module_538 View Gene Set 0.006211 8 0.03456 80 Genes in module_538 www.broad.mit.e...
Broad module_178 View Gene Set 0.006506 17 0.03516 84 Genes in module_178 www.broad.mit.e...
Broad module_421 View Gene Set 0.007169 23 0.03829 85 Genes in module_421 www.broad.mit.e...
Broad module_307 View Gene Set 0.008096 24 0.04274 86 Genes in module_307 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 7.94e-13 1197 6.55e-10 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 6.544e-10 1623 2.699e-07 2 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 2.096e-08 801 5.763e-06 3 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 9.61e-08 253 1.755e-05 4 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 1.064e-07 147 1.755e-05 4 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 1.828e-06 101 0.0002513 6 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 3.878e-06 74 0.0003999 7 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 3.439e-06 73 0.0003999 7 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 4.553e-06 197 0.0004173 9 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 1.541e-05 117 0.001271 10 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE View Gene Set 3.934e-05 72 0.002705 11 Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 3.608e-05 159 0.002705 11 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001003 458 0.006366 13 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY View Gene Set 0.0001639 59 0.009012 14 Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0001544 601 0.009012 14 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 0.0002271 304 0.01171 16 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 0.0002513 187 0.01195 17 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 0.0002608 660 0.01195 17 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 0.0003228 288 0.01402 19 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad RRNA_PROCESSING View Gene Set 0.0003981 11 0.01642 20 Genes annotated by the GO term GO:0006364. Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 0.0004624 271 0.01817 21 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad CHROMATIN_MODIFICATION View Gene Set 0.0005019 50 0.01882 22 Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 0.0005353 738 0.0192 23 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 0.0005708 167 0.01962 24 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 0.0006167 123 0.02035 25 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 0.0006932 767 0.02118 26 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad RRNA_METABOLIC_PROCESS View Gene Set 0.0006834 12 0.02118 26 Genes annotated by the GO term GO:0016072. The chemical reactions and pathways involving rRNA ribosomal RNA a structural constituent of ribosomes. www.broad.mit.e...
Broad RESPONSE_TO_STRESS View Gene Set 0.0009242 495 0.02629 28 Genes annotated by the GO term GO:0006950. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually but not necessarily exogenous (e.g. temperature humidity ionizing radiation). www.broad.mit.e...
Broad PROTEIN_METABOLIC_PROCESS View Gene Set 0.0009228 1198 0.02629 28 Genes annotated by the GO term GO:0019538. The chemical reactions and pathways involving a specific protein rather than of proteins in general. Includes protein modification. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 0.001018 625 0.028 30 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 0.001053 555 0.02801 31 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 0.001169 779 0.03014 32 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS View Gene Set 0.001259 27 0.03146 33 Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 0.001333 623 0.03209 34 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.001361 285 0.03209 34 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad RNA_EXPORT_FROM_NUCLEUS View Gene Set 0.001456 20 0.03338 36 Genes annotated by the GO term GO:0006405. The directed movement of RNA from the nucleus to the cytoplasm. www.broad.mit.e...
Broad TRANSLATIONAL_INITIATION View Gene Set 0.001542 39 0.03439 37 Genes annotated by the GO term GO:0006413. The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome mRNA and an initiation complex that contains the first aminoacyl-tRNA. www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT View Gene Set 0.001807 23 0.03924 38 Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure. www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS View Gene Set 0.002107 1085 0.04457 39 Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification. www.broad.mit.e...
Broad ANTI_APOPTOSIS View Gene Set 0.002177 115 0.04489 40 Genes annotated by the GO term GO:0006916. A process which directly inhibits any of the steps required for cell death by apoptosis. www.broad.mit.e...
Broad CHROMATIN_ASSEMBLY_OR_DISASSEMBLY View Gene Set 0.002466 26 0.04963 41 Genes annotated by the GO term GO:0006333. The formation or destruction of chromatin structures. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 2.816e-20 1353 6.562e-18 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 2.146e-17 543 2.5e-15 2 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad ORGANELLE_PART View Gene Set 3.773e-16 1149 2.198e-14 3 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 3.104e-16 1144 2.198e-14 3 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 1.332e-12 2054 6.209e-11 5 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 1.012e-09 335 3.931e-08 6 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 1.189e-08 1350 3.956e-07 7 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 4.334e-08 365 1.262e-06 8 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 1.572e-07 434 3.662e-06 9 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 1.572e-07 434 3.662e-06 9 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 2.997e-06 613 5.701e-05 11 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 2.997e-06 613 5.701e-05 11 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 3.181e-06 914 5.701e-05 11 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 3.859e-06 129 6.422e-05 14 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 5.922e-06 116 9.199e-05 15 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad ENVELOPE View Gene Set 1.437e-05 165 0.000197 16 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 1.437e-05 165 0.000197 16 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 8.14e-05 44 0.001014 18 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 8.271e-05 71 0.001014 18 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 9.546e-05 20 0.001112 20 Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 0.0003237 202 0.003592 21 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 0.0003579 290 0.00379 22 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 0.0003815 122 0.003865 23 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM View Gene Set 0.0004306 282 0.004181 24 Genes annotated by the GO term GO:0005783. The irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. The ER takes two forms rough (or granular) with ribosomes adhering to the outer surface and smooth (with no ribosomes attached). www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 0.0005588 266 0.005208 25 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad NUCLEOLAR_PART View Gene Set 0.0006066 16 0.005436 26 Genes annotated by the GO term GO:0044452. Any constituent part of a nucleolus a small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 0.0009307 53 0.008032 27 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 0.001361 799 0.01093 28 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART View Gene Set 0.001358 33 0.01093 28 Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 0.002041 213 0.01562 30 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad NUCLEAR_PORE View Gene Set 0.002078 29 0.01562 30 Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 0.002431 95 0.0177 32 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.003023 16 0.02013 33 Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX View Gene Set 0.003023 16 0.02013 33 Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.003023 16 0.02013 33 Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 0.004799 95 0.03106 36 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 0.005128 140 0.03144 37 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 0.005001 146 0.03144 37 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad NUCLEAR_REPLICATION_FORK View Gene Set 0.005538 10 0.03147 39 Genes annotated by the GO term GO:0043596. The Y-shaped region of a nuclear replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. www.broad.mit.e...
Broad PORE_COMPLEX View Gene Set 0.005463 34 0.03147 39 Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 0.00544 48 0.03147 39 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad EARLY_ENDOSOME View Gene Set 0.006036 18 0.03348 42 Genes annotated by the GO term GO:0005769. Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered. www.broad.mit.e...
Broad CHROMATIN View Gene Set 0.006619 35 0.03586 43 Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE View Gene Set 0.007343 85 0.03889 44 Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad CELL_SUBSTRATE_ADHERENS_JUNCTION View Gene Set 0.007667 14 0.03918 45 Genes annotated by the GO term GO:0005924. An adherens junction which connects a cell to the extracellular matrix. www.broad.mit.e...
Broad ENDOSOME View Gene Set 0.007735 64 0.03918 45 Genes annotated by the GO term GO:0005768. A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 0.009482 32 0.047 47 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE_ENDOPLASMIC_RETICULUM_NETWORK View Gene Set 0.009847 91 0.04701 48 Genes annotated by the GO term GO:0042175. The continuous network of membranes encompassing the outer nuclear membrane and the endoplasmic reticulum. www.broad.mit.e...
Broad NUCLEAR_CHROMATIN View Gene Set 0.009887 14 0.04701 48 Genes annotated by the GO term GO:0000790. The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOTIDYLTRANSFERASE_ACTIVITY View Gene Set 5.167e-06 47 0.001999 1 Genes annotated by the GO term GO:0016779. Catalysis of the transfer of a nucleotidyl group to a reactant. www.broad.mit.e...
Broad RNA_BINDING View Gene Set 1.01e-05 236 0.001999 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad METHYLTRANSFERASE_ACTIVITY View Gene Set 3.918e-05 36 0.005172 3 Genes annotated by the GO term GO:0008168. Catalysis of the transfer of a methyl group to an acceptor molecule. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_ONE_CARBON_GROUPS View Gene Set 7.931e-05 37 0.007851 4 Genes annotated by the GO term GO:0016741. Catalysis of the transfer of a one-carbon group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad 3_5_EXONUCLEASE_ACTIVITY View Gene Set 0.000243 12 0.01924 5 Genes annotated by the GO term GO:0008408. Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. www.broad.mit.e...
Broad RNA_POLYMERASE_ACTIVITY View Gene Set 0.0003105 16 0.02049 6 Genes annotated by the GO term GO:0034062. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING View Gene Set 0.0004385 300 0.02481 7 Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription. www.broad.mit.e...
Broad TRANSCRIPTION_COACTIVATOR_ACTIVITY View Gene Set 0.0009564 121 0.04208 8 Genes annotated by the GO term GO:0003713. The function of a transcription cofactor that activates transcription from a RNA polymerase II promoter; does not bind DNA itself. www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY View Gene Set 0.0009372 222 0.04208 8 Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself. www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY View Gene Set 0.001144 41 0.04531 10 Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING View Gene Set 0.001278 39 0.046 11 Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 1.12e-21 421 2.807e-18 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 3.311e-21 106 4.15e-18 2 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 1.027e-16 208 8.579e-14 3 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 2.071e-15 504 1.298e-12 4 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 11042152 View Gene Set 5.56e-15 315 2.788e-12 5 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 1.645e-11 773 6.874e-09 6 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 2.152e-11 391 7.707e-09 7 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 1.889e-10 74 5.92e-08 8 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 2.19e-10 108 6.099e-08 9 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 3.263e-10 212 8.18e-08 10 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 9.625e-09 210 2.194e-06 11 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 20085707 View Gene Set 1.189e-08 42 2.484e-06 12 Aire's partners in the molecular control of immunological tolerance. www.ncbi.nlm.ni...
PMID 10810093 View Gene Set 1.742e-08 151 3.359e-06 13 Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 4.493e-08 693 8.045e-06 14 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 16130169 View Gene Set 9.706e-07 74 0.0001622 15 Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. www.ncbi.nlm.ni...
PMID 14667819 View Gene Set 2.413e-06 112 0.0003781 16 Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 3.357e-06 58 0.0004943 17 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...
PMID 16236267 View Gene Set 3.549e-06 77 0.0004943 17 Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress. www.ncbi.nlm.ni...
PMID 15761153 View Gene Set 3.999e-06 211 0.0005276 19 High-throughput mapping of a dynamic signaling network in mammalian cells. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 5.799e-06 24 0.0007269 20 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 7.53e-06 34 0.0008989 21 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 12391170 View Gene Set 1.072e-05 18 0.00114 22 Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 1.001e-05 317 0.00114 22 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 16341674 View Gene Set 1.164e-05 392 0.00114 22 Transcriptome analysis of human gastric cancer. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 1.106e-05 22 0.00114 22 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 9110174 View Gene Set 1.182e-05 528 0.00114 22 Large-scale concatenation cDNA sequencing. www.ncbi.nlm.ni...
PMID 11080476 View Gene Set 1.342e-05 87 0.001246 27 Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones. www.ncbi.nlm.ni...
PMID 16051665 View Gene Set 1.653e-05 15 0.00148 28 Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes. www.ncbi.nlm.ni...
PMID 12665801 View Gene Set 2.008e-05 261 0.001669 29 Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. www.ncbi.nlm.ni...
PMID 18063578 View Gene Set 2.064e-05 31 0.001669 29 The layered structure of human mitochondrial DNA nucleoids. www.ncbi.nlm.ni...
PMID 8619474 View Gene Set 2.053e-05 534 0.001669 29 A "double adaptor" method for improved shotgun library construction. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 3.013e-05 51 0.00236 32 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 16712791 View Gene Set 3.421e-05 342 0.002599 33 Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. www.ncbi.nlm.ni...
PMID 16916647 View Gene Set 3.54e-05 76 0.00261 34 Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. www.ncbi.nlm.ni...
PMID 11689053 View Gene Set 3.945e-05 70 0.002826 35 Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 4.325e-05 102 0.003012 36 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 5.073e-05 22 0.003437 37 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 7.162e-05 23 0.004725 38 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 15226314 View Gene Set 7.625e-05 20 0.004779 39 Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. www.ncbi.nlm.ni...
PMID 15782174 View Gene Set 7.51e-05 31 0.004779 39 Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. www.ncbi.nlm.ni...
PMID 9566873 View Gene Set 8.416e-05 74 0.005146 41 Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter. www.ncbi.nlm.ni...
PMID 12614612 View Gene Set 8.668e-05 19 0.005174 42 Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. www.ncbi.nlm.ni...
PMID 14697242 View Gene Set 9.443e-05 15 0.005505 43 Chromosome 13q12 encoded Rho GTPase activating protein suppresses growth of breast carcinoma cells and yeast two-hybrid screen shows its interaction with several proteins. www.ncbi.nlm.ni...
PMID 19027726 View Gene Set 9.875e-05 73 0.005626 44 The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. www.ncbi.nlm.ni...
PMID 14657027 View Gene Set 0.0001343 74 0.007479 45 Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter. www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 0.0002092 522 0.0114 46 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 12620389 View Gene Set 0.0002201 23 0.01174 47 Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 0.0002343 37 0.01224 48 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 12221128 View Gene Set 0.0002657 70 0.01359 49 Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 0.0002719 748 0.01359 50 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 16319397 View Gene Set 0.0002765 20 0.01359 50 Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 0.0003123 182 0.01506 52 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 12045100 View Gene Set 0.0003348 18 0.01584 53 DNA replication in eukaryotic cells. www.ncbi.nlm.ni...
PMID 9439656 View Gene Set 0.0004006 55 0.0186 54 The human histone gene cluster at the D6S105 locus. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 0.000447 48 0.02038 55 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 15231748 View Gene Set 0.0004782 519 0.02141 56 Functional proteomics mapping of a human signaling pathway. www.ncbi.nlm.ni...
PMID 9150948 View Gene Set 0.0004996 15 0.02197 57 A two-dimensional gel database of human colon carcinoma proteins. www.ncbi.nlm.ni...
PMID 12408966 View Gene Set 0.0005431 76 0.02348 58 The human and mouse replication-dependent histone genes. www.ncbi.nlm.ni...
PMID 11238380 View Gene Set 0.0005577 10 0.0237 59 Purification and characterization of mSin3A-containing Brg1 and hBrm chromatin remodeling complexes. www.ncbi.nlm.ni...
PMID 14743216 View Gene Set 0.0006113 132 0.02554 60 A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. www.ncbi.nlm.ni...
PMID 15345747 View Gene Set 0.0006217 148 0.02555 61 Phosphoproteomic analysis of the developing mouse brain. www.ncbi.nlm.ni...
PMID 12761501 View Gene Set 0.0006559 94 0.02628 62 Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. www.ncbi.nlm.ni...
PMID 16713569 View Gene Set 0.0006605 570 0.02628 62 A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 0.0006733 31 0.02637 64 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 15456888 View Gene Set 0.0007019 24 0.02707 65 The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 0.0007437 58 0.02825 66 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 11013263 View Gene Set 0.0008236 16 0.03082 67 A novel nuclear receptor corepressor complex N-CoR contains components of the mammalian SWI/SNF complex and the corepressor KAP-1. www.ncbi.nlm.ni...
PMID 16730941 View Gene Set 0.0008368 55 0.03085 68 A systematic analysis of human CHMP protein interactions: additional MIT domain-containing proteins bind to multiple components of the human ESCRT III complex. www.ncbi.nlm.ni...
PMID 15489336 View Gene Set 0.0008637 722 0.03138 69 From ORFeome to biology: a functional genomics pipeline. www.ncbi.nlm.ni...
PMID 16381901 View Gene Set 0.001012 720 0.03624 70 The LIFEdb database in 2006. www.ncbi.nlm.ni...
PMID 11076968 View Gene Set 0.001107 62 0.03699 71 The centrosomal protein C-Nap1 is required for cell cycle-regulated centrosome cohesion. www.ncbi.nlm.ni...
PMID 12676794 View Gene Set 0.001121 33 0.03699 71 The RNA polymerase II elongation complex. www.ncbi.nlm.ni...
PMID 12852856 View Gene Set 0.001107 61 0.03699 71 Polo-like kinase 1 regulates Nlp a centrosome protein involved in microtubule nucleation. www.ncbi.nlm.ni...
PMID 16462731 View Gene Set 0.001107 62 0.03699 71 The PITSLRE/CDK11p58 protein kinase promotes centrosome maturation and bipolar spindle formation. www.ncbi.nlm.ni...
PMID 7584026 View Gene Set 0.001064 43 0.03699 71 Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1. www.ncbi.nlm.ni...
PMID 7790358 View Gene Set 0.001107 61 0.03699 71 Cell cycle regulation of the activity and subcellular localization of Plk1 a human protein kinase implicated in mitotic spindle function. www.ncbi.nlm.ni...
PMID 15146077 View Gene Set 0.001159 32 0.03772 77 The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. www.ncbi.nlm.ni...
PMID 18954305 View Gene Set 0.001233 13 0.03962 78 Structural basis and specificity of human otubain 1-mediated deubiquitination. www.ncbi.nlm.ni...
PMID 10436018 View Gene Set 0.001261 15 0.03977 79 The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 0.001269 68 0.03977 79 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 15130578 View Gene Set 0.001314 22 0.04068 81 Why do cells need an assembly machine for RNA-protein complexes? www.ncbi.nlm.ni...
PMID 16359901 View Gene Set 0.001445 14 0.04363 82 Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing. www.ncbi.nlm.ni...
PMID 19896490 View Gene Set 0.001432 18 0.04363 82 Low 8-oxo-7 8-dihydro-2'-deoxyguanosine levels and influence of genetic background in an Andean population exposed to high levels of arsenic. www.ncbi.nlm.ni...
PMID 12379213 View Gene Set 0.001495 18 0.04462 84 Transcription factor TFIIH components enhance the GR coactivator activity but not the cell cycle-arresting activity of the human immunodeficiency virus type-1 protein Vpr. www.ncbi.nlm.ni...
PMID 11095689 View Gene Set 0.00161 17 0.04748 85 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr14_57.5-62.5Mb View Gene Set 9.123e-05 23 0.03115 1 Genomic tile: chr14 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr14_60-65Mb View Gene Set 0.0001173 24 0.03115 1 Genomic tile: chr14 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr14_62.5-67.5Mb View Gene Set 0.0001398 31 0.03115 1 Genomic tile: chr14 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr3_95-100Mb View Gene Set 8.891e-05 10 0.03115 1 Genomic tile: chr3 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr9_92.5-97.5Mb View Gene Set 0.0001254 34 0.03115 1 Genomic tile: chr9 ; 92500001-97500001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 8.547e-07 229 0.0006282 1 RRM expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:2.7.7.6 View Gene Set 0.0001444 17 0.02281 1 DNA-directed RNA polymerase expasy.org/enzy...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 2.108e-13 236 4.843e-10 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 1.007e-07 101 0.0001156 2 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 2.029e-06 28 0.001165 3 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.726e-06 147 0.001165 3 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 5.799e-06 64 0.002664 5 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 7.146e-06 12 0.002736 6 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 1.216e-05 40 0.00399 7 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.MED30 View Gene Set 2.081e-05 26 0.005974 8 Protein-protein-interaction for MED30 www.ncbi.nlm.ni...
Null ppi.ZNF638 View Gene Set 3.474e-05 11 0.008766 9 Protein-protein-interaction for ZNF638 www.ncbi.nlm.ni...
Null ppi.USP50 View Gene Set 3.816e-05 22 0.008766 9 Protein-protein-interaction for USP50 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 5.179e-05 15 0.01082 11 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 7.06e-05 35 0.01351 12 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 9.046e-05 9 0.01598 13 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 0.0001199 37 0.01967 14 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.HIST2H2AC View Gene Set 0.0001351 13 0.02069 15 Protein-protein-interaction for HIST2H2AC www.ncbi.nlm.ni...
Null ppi.ATG4B View Gene Set 0.0001568 9 0.02196 16 Protein-protein-interaction for ATG4B www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 0.0001625 11 0.02196 16 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.GPN1 View Gene Set 0.0002228 27 0.02271 18 Protein-protein-interaction for GPN1 www.ncbi.nlm.ni...
Null ppi.GABARAPL2 View Gene Set 0.0001959 28 0.02271 18 Protein-protein-interaction for GABARAPL2 www.ncbi.nlm.ni...
Null ppi.CREBBP View Gene Set 0.0002022 22 0.02271 18 Protein-protein-interaction for CREBBP www.ncbi.nlm.ni...
Null ppi.SGTA View Gene Set 0.0002207 11 0.02271 18 Protein-protein-interaction for SGTA www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.0002274 50 0.02271 18 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 0.0002155 168 0.02271 18 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.RBBP4 View Gene Set 0.0002376 21 0.02274 24 Protein-protein-interaction for RBBP4 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 0.0002853 35 0.02427 25 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.HMGA1 View Gene Set 0.0002831 8 0.02427 25 Protein-protein-interaction for HMGA1 www.ncbi.nlm.ni...
Null ppi.RAD18 View Gene Set 0.0002844 14 0.02427 25 Protein-protein-interaction for RAD18 www.ncbi.nlm.ni...
Null ppi.EIF3F View Gene Set 0.0003016 22 0.02474 28 Protein-protein-interaction for EIF3F www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0003275 104 0.02507 29 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.NEK9 View Gene Set 0.000318 9 0.02507 29 Protein-protein-interaction for NEK9 www.ncbi.nlm.ni...
Null ppi.WDR77 View Gene Set 0.000347 15 0.02571 31 Protein-protein-interaction for WDR77 www.ncbi.nlm.ni...
Null ppi.RPAP3 View Gene Set 0.0003711 29 0.02664 32 Protein-protein-interaction for RPAP3 www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 0.0004136 79 0.02794 33 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.DERL1 View Gene Set 0.000403 10 0.02794 33 Protein-protein-interaction for DERL1 www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 0.0004669 24 0.02979 35 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.VHL View Gene Set 0.0004587 50 0.02979 35 Protein-protein-interaction for VHL www.ncbi.nlm.ni...
Null ppi.CCL2 View Gene Set 0.0006324 11 0.03926 37 Protein-protein-interaction for CCL2 www.ncbi.nlm.ni...
Null ppi.POLR1A View Gene Set 0.0006752 11 0.04081 38 Protein-protein-interaction for POLR1A www.ncbi.nlm.ni...
Null ppi.CDC7 View Gene Set 0.0007458 7 0.04303 39 Protein-protein-interaction for CDC7 www.ncbi.nlm.ni...
Null ppi.USP42 View Gene Set 0.0007493 24 0.04303 39 Protein-protein-interaction for USP42 www.ncbi.nlm.ni...
Null ppi.MED6 View Gene Set 0.0008336 16 0.04559 41 Protein-protein-interaction for MED6 www.ncbi.nlm.ni...
Null ppi.RPAP1 View Gene Set 0.0008139 24 0.04559 41 Protein-protein-interaction for RPAP1 www.ncbi.nlm.ni...
Null ppi.CUL1 View Gene Set 0.0008675 27 0.04634 43 Protein-protein-interaction for CUL1 www.ncbi.nlm.ni...
Null ppi.PRMT5 View Gene Set 0.0009252 31 0.0483 44 Protein-protein-interaction for PRMT5 www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SUMO4 View Gene Set 3.452e-06 76 0.008195 1 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.GEMIN4 View Gene Set 1.164e-05 15 0.01097 2 Protein-protein-interaction for GEMIN4 www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 1.387e-05 25 0.01097 2 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 4.224e-05 49 0.02006 4 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 3.75e-05 11 0.02006 4 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 2.463e-13 251 8.851e-10 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 1.007e-07 101 0.0001809 2 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 2.029e-06 28 0.001823 3 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.726e-06 147 0.001823 3 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 3.452e-06 76 0.002481 5 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 1.23e-05 72 0.006476 6 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 1.261e-05 15 0.006476 6 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 1.701e-05 11 0.007643 8 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 2.267e-05 47 0.008146 9 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.MED30 View Gene Set 2.081e-05 26 0.008146 9 Protein-protein-interaction for MED30 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 2.985e-05 50 0.009752 11 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.ZNF638 View Gene Set 3.474e-05 11 0.01011 12 Protein-protein-interaction for ZNF638 www.ncbi.nlm.ni...
Null ppi.USP50 View Gene Set 3.816e-05 22 0.01011 12 Protein-protein-interaction for USP50 www.ncbi.nlm.ni...
Null ppi.WDR77 View Gene Set 3.94e-05 18 0.01011 12 Protein-protein-interaction for WDR77 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 7.06e-05 35 0.01586 15 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.GEMIN4 View Gene Set 7.035e-05 29 0.01586 15 Protein-protein-interaction for GEMIN4 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 7.763e-05 42 0.01641 17 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.HIST2H2AC View Gene Set 8.311e-05 14 0.0166 18 Protein-protein-interaction for HIST2H2AC www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 9.04e-05 28 0.0171 19 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.STARD13 View Gene Set 0.0001176 15 0.02113 20 Protein-protein-interaction for STARD13 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 0.0001304 220 0.02231 21 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.ATG4B View Gene Set 0.0001568 9 0.02562 22 Protein-protein-interaction for ATG4B www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0001811 116 0.02711 23 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.PTMA View Gene Set 0.0001799 21 0.02711 23 Protein-protein-interaction for PTMA www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 0.0001949 21 0.02802 25 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.GPN1 View Gene Set 0.0002228 27 0.02953 26 Protein-protein-interaction for GPN1 www.ncbi.nlm.ni...
Null ppi.GABARAPL2 View Gene Set 0.0002382 31 0.02953 26 Protein-protein-interaction for GABARAPL2 www.ncbi.nlm.ni...
Null ppi.CREBBP View Gene Set 0.0002317 34 0.02953 26 Protein-protein-interaction for CREBBP www.ncbi.nlm.ni...
Null ppi.RBBP4 View Gene Set 0.0002376 21 0.02953 26 Protein-protein-interaction for RBBP4 www.ncbi.nlm.ni...
Null ppi.RAD18 View Gene Set 0.0002844 14 0.03277 30 Protein-protein-interaction for RAD18 www.ncbi.nlm.ni...
Null ppi.VHL View Gene Set 0.0002889 51 0.03277 30 Protein-protein-interaction for VHL www.ncbi.nlm.ni...
Null ppi.RPAP3 View Gene Set 0.0002918 30 0.03277 30 Protein-protein-interaction for RPAP3 www.ncbi.nlm.ni...
Null ppi.POLR3H View Gene Set 0.0003994 15 0.0435 33 Protein-protein-interaction for POLR3H www.ncbi.nlm.ni...
Null ppi.USP39 View Gene Set 0.0004232 16 0.04473 34 Protein-protein-interaction for USP39 www.ncbi.nlm.ni...
Null ppi.NPM1 View Gene Set 0.0004708 26 0.04834 35 Protein-protein-interaction for NPM1 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TNF alpha/NF-kB View Gene Set 0.000228 170 0.00228 1 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null pyrimidine deoxyribonucleotides de novo biosynthesis View Gene Set 6.798e-05 14 0.01767 1 HUMANCYC - pyrimidine deoxyribonucleotides de novo biosynthesis gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Validated targets of C-MYC transcriptional activation View Gene Set 5.105e-07 80 9.495e-05 1 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null C-MYC pathway View Gene Set 1.949e-06 149 0.0001813 2 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null Signaling mediated by p38-alpha and p38-beta View Gene Set 0.0001243 50 0.007708 3 NCI_NATURE - Signaling mediated by p38-alpha and p38-beta gene set www.pathwaycomm...
Null p53 pathway View Gene Set 0.0002445 190 0.009618 4 NCI_NATURE - p53 pathway gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 0.0002585 875 0.009618 4 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 0.0003418 937 0.0106 6 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 0.0008791 812 0.01817 7 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 0.0008791 812 0.01817 7 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 0.0008791 812 0.01817 7 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 0.001129 796 0.021 10 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null Direct p53 effectors View Gene Set 0.001276 139 0.02157 11 NCI_NATURE - Direct p53 effectors gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.002446 29 0.03785 12 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 0.002645 841 0.03785 12 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 0.00293 686 0.03893 14 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 0.003362 688 0.04169 15 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Gene Expression View Gene Set 8.672e-13 381 9.687e-10 1 REACTOME - Gene Expression gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 7.488e-11 158 3.489e-08 2 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 9.371e-11 138 3.489e-08 2 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null mRNA Splicing - Major Pathway View Gene Set 4.595e-10 107 1.001e-07 4 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 4.595e-10 107 1.001e-07 4 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 5.378e-10 185 1.001e-07 4 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null Cell Cycle Mitotic View Gene Set 6.033e-08 312 9.627e-06 7 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null Metabolism of proteins View Gene Set 7.207e-08 263 1.006e-05 8 REACTOME - Metabolism of proteins gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 7.028e-07 174 8.722e-05 9 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null Transcription View Gene Set 1.411e-06 178 0.0001576 10 REACTOME - Transcription gene set www.pathwaycomm...
Null mRNA Splicing - Minor Pathway View Gene Set 1.766e-06 42 0.0001793 11 REACTOME - mRNA Splicing - Minor Pathway gene set www.pathwaycomm...
Null Deadenylation-dependent mRNA decay View Gene Set 6.593e-06 46 0.0006137 12 REACTOME - Deadenylation-dependent mRNA decay gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 8.854e-06 104 0.0007607 13 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 1.317e-05 30 0.001051 14 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 2.088e-05 98 0.001555 15 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 2.799e-05 96 0.001954 16 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 3.833e-05 113 0.002519 17 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 4.398e-05 51 0.002729 18 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 5.703e-05 103 0.003353 19 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null RNA Polymerase II Transcription View Gene Set 6.389e-05 101 0.003568 20 REACTOME - RNA Polymerase II Transcription gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 7.169e-05 55 0.003813 21 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null Interferon gamma signaling View Gene Set 0.0001299 48 0.006309 22 REACTOME - Interferon gamma signaling gene set www.pathwaycomm...
Null Double-Strand Break Repair View Gene Set 0.0001275 27 0.006309 22 REACTOME - Double-Strand Break Repair gene set www.pathwaycomm...
Null Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. View Gene Set 0.0001409 91 0.006557 24 REACTOME - Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. gene set www.pathwaycomm... ATP synthesis b... and heat produc...
Null Homologous Recombination Repair View Gene Set 0.0001923 22 0.007957 25 REACTOME - Homologous Recombination Repair gene set www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks View Gene Set 0.0001923 22 0.007957 25 REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set www.pathwaycomm...
Null Metabolism of mRNA View Gene Set 0.0001863 125 0.007957 25 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Respiratory electron transport View Gene Set 0.0002024 76 0.008074 28 REACTOME - Respiratory electron transport gene set www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere View Gene Set 0.0002296 11 0.008723 29 REACTOME - Processive synthesis on the C-strand of the telomere gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 0.0002343 37 0.008723 29 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null Post-Elongation Processing of the Transcript View Gene Set 0.0002788 43 0.008896 31 REACTOME - Post-Elongation Processing of the Transcript gene set www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region View Gene Set 0.0002788 43 0.008896 31 REACTOME - Cleavage of Growing Transcript in the Termination Region gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Termination View Gene Set 0.0002788 43 0.008896 31 REACTOME - RNA Polymerase II Transcription Termination gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 0.0002754 73 0.008896 31 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 0.0002754 72 0.008896 31 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA View Gene Set 0.0003234 34 0.009725 36 REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set www.pathwaycomm...
Null mRNA 3'-end processing View Gene Set 0.0003234 34 0.009725 36 REACTOME - mRNA 3'-end processing gene set www.pathwaycomm...
Null DNA Replication View Gene Set 0.0003308 200 0.009725 36 REACTOME - DNA Replication gene set www.pathwaycomm...
Null Late Phase of HIV Life Cycle View Gene Set 0.0003604 92 0.009737 39 REACTOME - Late Phase of HIV Life Cycle gene set www.pathwaycomm...
Null Post-translational protein modification View Gene Set 0.0003727 114 0.009737 39 REACTOME - Post-translational protein modification gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 0.0003748 31 0.009737 39 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null snRNP Assembly View Gene Set 0.0003645 50 0.009737 39 REACTOME - snRNP Assembly gene set www.pathwaycomm...
Null Metabolism of non-coding RNA View Gene Set 0.0003645 50 0.009737 39 REACTOME - Metabolism of non-coding RNA gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex containing HIV-1 Tat View Gene Set 0.000436 41 0.01036 44 REACTOME - Formation of HIV-1 elongation complex containing HIV-1 Tat gene set www.pathwaycomm...
Null Tat-mediated elongation of the HIV-1 transcript View Gene Set 0.000436 41 0.01036 44 REACTOME - Tat-mediated elongation of the HIV-1 transcript gene set www.pathwaycomm...
Null HIV-1 Transcription Elongation View Gene Set 0.000436 41 0.01036 44 REACTOME - HIV-1 Transcription Elongation gene set www.pathwaycomm...
Null S Phase View Gene Set 0.0004336 113 0.01036 44 REACTOME - S Phase gene set www.pathwaycomm...
Null Deadenylation of mRNA View Gene Set 0.0004705 22 0.01095 48 REACTOME - Deadenylation of mRNA gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 0.0005252 69 0.01197 49 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 0.0005695 28 0.01272 50 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null Processive synthesis on the lagging strand View Gene Set 0.0006256 15 0.0137 51 REACTOME - Processive synthesis on the lagging strand gene set www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 0.0006835 93 0.01414 52 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null Resolution of D-loop structures through Holliday junction intermediates View Gene Set 0.0006722 6 0.01414 52 REACTOME - Resolution of D-loop structures through Holliday junction intermediates gene set www.pathwaycomm...
Null Resolution of D-loop structures View Gene Set 0.0006722 6 0.01414 52 REACTOME - Resolution of D-loop structures gene set www.pathwaycomm...
Null Translation View Gene Set 0.0007124 120 0.01447 55 REACTOME - Translation gene set www.pathwaycomm...
Null Influenza Infection View Gene Set 0.0007642 143 0.01524 56 REACTOME - Influenza Infection gene set www.pathwaycomm...
Null Removal of the Flap Intermediate from the C-strand View Gene Set 0.0008522 10 0.0165 57 REACTOME - Removal of the Flap Intermediate from the C-strand gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 0.0008569 180 0.0165 57 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null Cap-dependent Translation Initiation View Gene Set 0.0009177 113 0.01708 59 REACTOME - Cap-dependent Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Initiation View Gene Set 0.0009177 113 0.01708 59 REACTOME - Eukaryotic Translation Initiation gene set www.pathwaycomm...
Null Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding View Gene Set 0.001053 15 0.01928 61 REACTOME - Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding gene set www.pathwaycomm...
Null Pausing and recovery of Tat-mediated HIV-1 elongation View Gene Set 0.001133 29 0.01997 62 REACTOME - Pausing and recovery of Tat-mediated HIV-1 elongation gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex in the absence of HIV-1 Tat View Gene Set 0.001215 42 0.01997 62 REACTOME - Formation of HIV-1 elongation complex in the absence of HIV-1 Tat gene set www.pathwaycomm...
Null Tat-mediated HIV-1 elongation arrest and recovery View Gene Set 0.001133 29 0.01997 62 REACTOME - Tat-mediated HIV-1 elongation arrest and recovery gene set www.pathwaycomm...
Null Formation of RNA Pol II elongation complex View Gene Set 0.001215 42 0.01997 62 REACTOME - Formation of RNA Pol II elongation complex gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Elongation View Gene Set 0.001215 42 0.01997 62 REACTOME - RNA Polymerase II Transcription Elongation gene set www.pathwaycomm...
Null Prefoldin mediated transfer of substrate to CCT/TriC View Gene Set 0.001151 14 0.01997 62 REACTOME - Prefoldin mediated transfer of substrate to CCT/TriC gene set www.pathwaycomm...
Null DNA Repair View Gene Set 0.001169 108 0.01997 62 REACTOME - DNA Repair gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 0.00152 49 0.0246 69 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 0.00157 43 0.02506 70 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null Loss of proteins required for interphase microtubule organization from the centrosome View Gene Set 0.001663 62 0.02579 71 REACTOME - Loss of proteins required for interphase microtubule organization from the centrosome gene set www.pathwaycomm...
Null Loss of Nlp from mitotic centrosomes View Gene Set 0.001663 62 0.02579 71 REACTOME - Loss of Nlp from mitotic centrosomes gene set www.pathwaycomm...
Null Influenza Life Cycle View Gene Set 0.001871 138 0.02863 73 REACTOME - Influenza Life Cycle gene set www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation From Type 2 Promoter View Gene Set 0.001971 20 0.02897 74 REACTOME - RNA Polymerase III Transcription Initiation From Type 2 Promoter gene set www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation From Type 1 Promoter View Gene Set 0.001971 21 0.02897 74 REACTOME - RNA Polymerase III Transcription Initiation From Type 1 Promoter gene set www.pathwaycomm...
Null Removal of the Flap Intermediate View Gene Set 0.001949 14 0.02897 74 REACTOME - Removal of the Flap Intermediate gene set www.pathwaycomm...
Null Interactions of Rev with host cellular proteins View Gene Set 0.002027 33 0.02902 77 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null E2F mediated regulation of DNA replication View Gene Set 0.002024 28 0.02902 77 REACTOME - E2F mediated regulation of DNA replication gene set www.pathwaycomm...
Null Interferon Signaling View Gene Set 0.002183 86 0.03086 79 REACTOME - Interferon Signaling gene set www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit View Gene Set 0.002484 106 0.03469 80 REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set www.pathwaycomm...
Null HIV Infection View Gene Set 0.002869 194 0.03909 81 REACTOME - HIV Infection gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Escape View Gene Set 0.002838 21 0.03909 81 REACTOME - RNA Polymerase I Promoter Escape gene set www.pathwaycomm...
Null Unwinding of DNA View Gene Set 0.002972 11 0.04 83 REACTOME - Unwinding of DNA gene set www.pathwaycomm...
Null Mitochondrial Fatty Acid Beta-Oxidation View Gene Set 0.003011 14 0.04004 84 REACTOME - Mitochondrial Fatty Acid Beta-Oxidation gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 0.003159 29 0.04009 85 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null Cholesterol biosynthesis View Gene Set 0.003156 20 0.04009 85 REACTOME - Cholesterol biosynthesis gene set www.pathwaycomm...
Null Base Excision Repair View Gene Set 0.003104 19 0.04009 85 REACTOME - Base Excision Repair gene set www.pathwaycomm...
Null Resolution of Abasic Sites (AP sites) View Gene Set 0.003104 19 0.04009 85 REACTOME - Resolution of Abasic Sites (AP sites) gene set www.pathwaycomm...
Null Pausing and recovery of elongation View Gene Set 0.003465 30 0.04074 89 REACTOME - Pausing and recovery of elongation gene set www.pathwaycomm...
Null Elongation arrest and recovery View Gene Set 0.003465 30 0.04074 89 REACTOME - Elongation arrest and recovery gene set www.pathwaycomm...
Null HIV-1 elongation arrest and recovery View Gene Set 0.003465 30 0.04074 89 REACTOME - HIV-1 elongation arrest and recovery gene set www.pathwaycomm...
Null Pausing and recovery of HIV-1 elongation View Gene Set 0.003465 30 0.04074 89 REACTOME - Pausing and recovery of HIV-1 elongation gene set www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation View Gene Set 0.003391 29 0.04074 89 REACTOME - RNA Polymerase III Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase I Chain Elongation View Gene Set 0.00344 49 0.04074 89 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null Smooth Muscle Contraction View Gene Set 0.003376 24 0.04074 89 REACTOME - Smooth Muscle Contraction gene set www.pathwaycomm...
Null 3' -UTR-mediated translational regulation View Gene Set 0.003593 105 0.04138 96 REACTOME - 3' -UTR-mediated translational regulation gene set www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression View Gene Set 0.003593 105 0.04138 96 REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 0.003911 32 0.04368 98 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null Chaperonin-mediated protein folding View Gene Set 0.003887 16 0.04368 98 REACTOME - Chaperonin-mediated protein folding gene set www.pathwaycomm...
Null Asparagine N-linked glycosylation View Gene Set 0.00387 77 0.04368 98 REACTOME - Asparagine N-linked glycosylation gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 0.004095 32 0.04523 101 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 0.004162 102 0.04523 101 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null Destabilization of mRNA by Tristetraprolin (TTP) View Gene Set 0.004171 18 0.04523 101 REACTOME - Destabilization of mRNA by Tristetraprolin (TTP) gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 0.004259 35 0.04574 104 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null mRNA Capping View Gene Set 0.004344 29 0.04581 105 REACTOME - mRNA Capping gene set www.pathwaycomm...
Null MRN complex relocalizes to nuclear foci View Gene Set 0.004388 4 0.04581 105 REACTOME - MRN complex relocalizes to nuclear foci gene set www.pathwaycomm...
Null Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks View Gene Set 0.004388 4 0.04581 105 REACTOME - Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks gene set www.pathwaycomm...
Null Destabilization of mRNA by KSRP View Gene Set 0.004653 18 0.04812 108 REACTOME - Destabilization of mRNA by KSRP gene set www.pathwaycomm...
Null Protein folding View Gene Set 0.004753 29 0.04871 109 REACTOME - Protein folding gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548a-5p View Gene Set 8.881e-10 2983 3.006e-07 1 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 5.941e-10 2860 3.006e-07 1 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-548n View Gene Set 2.677e-09 3830 6.041e-07 3 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 1.406e-08 3175 2.38e-06 4 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 4.7e-08 2909 4.546e-06 5 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 3.731e-08 2925 4.546e-06 5 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 4.106e-08 3575 4.546e-06 5 microRNA targets for hsa-miR-590-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 6.351e-08 3130 5.375e-06 8 microRNA targets for hsa-miR-548c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 2.151e-07 3270 1.618e-05 9 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 5.293e-07 1638 3.258e-05 10 microRNA targets for hsa-miR-381 from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 5.066e-07 1858 3.258e-05 10 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 7.044e-07 2652 3.974e-05 12 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 1.049e-06 2900 5.464e-05 13 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 1.355e-06 2210 6.552e-05 14 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 1.484e-06 2539 6.696e-05 15 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 4.305e-06 1644 0.0001822 16 microRNA targets for hsa-miR-300 from miranda.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 4.922e-06 1611 0.000196 17 microRNA targets for hsa-miR-30a from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 5.864e-06 2711 0.0002205 18 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 1.393e-05 1511 0.0004715 19 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 1.387e-05 1040 0.0004715 19 microRNA targets for hsa-miR-606 from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 1.489e-05 2312 0.0004801 21 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 2.688e-05 2438 0.0008273 22 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 2.844e-05 2065 0.0008371 23 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 6.745e-05 1500 0.001903 24 microRNA targets for hsa-miR-30d from miranda.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 7.829e-05 1695 0.00212 25 microRNA targets for hsa-miR-30b from miranda.targets www.mirbase.org...
Null hsa-miR-548g View Gene Set 8.626e-05 2114 0.002246 26 microRNA targets for hsa-miR-548g from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 9.47e-05 1789 0.00229 27 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 9.47e-05 1792 0.00229 27 microRNA targets for hsa-miR-30e from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 0.0001159 1921 0.002706 29 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.0001336 943 0.003014 30 microRNA targets for hsa-miR-935 from miranda.targets www.mirbase.org...
Null hsa-miR-548l View Gene Set 0.0001413 2599 0.003086 31 microRNA targets for hsa-miR-548l from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.0001616 3124 0.00342 32 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-1283 View Gene Set 0.0001753 1960 0.00349 33 microRNA targets for hsa-miR-1283 from miranda.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.0001739 1136 0.00349 33 microRNA targets for hsa-miR-491-3p from miranda.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.0001983 2574 0.003835 35 microRNA targets for hsa-miR-524-5p from miranda.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.0002044 1019 0.003844 36 microRNA targets for hsa-miR-1297 from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.0002161 1707 0.00385 37 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.0002133 1949 0.00385 37 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-1259 View Gene Set 0.0002529 1309 0.004281 39 microRNA targets for hsa-miR-1259 from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 0.0002483 2008 0.004281 39 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.0002824 2681 0.004346 41 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.0002814 2295 0.004346 41 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 0.0002774 1629 0.004346 41 microRNA targets for hsa-miR-421 from miranda.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 0.0002823 1452 0.004346 41 microRNA targets for hsa-miR-633 from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.0003095 2090 0.004656 45 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.0003169 1792 0.004663 46 microRNA targets for hsa-miR-30c from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 0.0003384 2114 0.004874 47 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-331-5p View Gene Set 0.0003677 815 0.005186 48 microRNA targets for hsa-miR-331-5p from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.000389 1687 0.005374 49 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 0.0004529 1933 0.0059 50 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 0.0004498 703 0.0059 50 microRNA targets for hsa-miR-518c from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 0.0004611 2246 0.0059 50 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 0.0004619 2207 0.0059 50 microRNA targets for hsa-miR-580 from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.0005348 2504 0.006705 54 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.0006074 2384 0.007402 55 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.0006122 1379 0.007402 55 microRNA targets for hsa-miR-888 from miranda.targets www.mirbase.org...
Null hsa-miR-548p View Gene Set 0.0007273 2743 0.008638 57 microRNA targets for hsa-miR-548p from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.0008244 1877 0.009623 58 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.0009688 1802 0.01112 59 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.001144 1449 0.0127 60 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-518f View Gene Set 0.001163 491 0.0127 60 microRNA targets for hsa-miR-518f from miranda.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 0.001148 1840 0.0127 60 microRNA targets for hsa-miR-579 from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 0.001311 2111 0.01409 63 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-505 View Gene Set 0.001389 1120 0.0147 64 microRNA targets for hsa-miR-505 from miranda.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.001462 2061 0.01523 65 microRNA targets for hsa-miR-373 from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.001486 1844 0.01524 66 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-1183 View Gene Set 0.001578 2417 0.01526 67 microRNA targets for hsa-miR-1183 from miranda.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 0.001526 1631 0.01526 67 microRNA targets for hsa-miR-335 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 0.001566 2420 0.01526 67 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 0.001577 1971 0.01526 67 microRNA targets for hsa-miR-582-5p from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.001645 1859 0.01569 71 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 0.001676 1022 0.01576 72 microRNA targets for hsa-miR-891b from miranda.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 0.001962 1330 0.0182 73 microRNA targets for hsa-miR-146b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.002088 1767 0.01911 74 microRNA targets for hsa-miR-144 from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.002142 1774 0.01934 75 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.002212 2212 0.0197 76 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.002368 1772 0.02082 77 microRNA targets for hsa-miR-1 from miranda.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 0.002414 1183 0.02095 78 microRNA targets for hsa-miR-567 from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 0.002476 1874 0.02122 79 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 0.002531 1605 0.02142 80 microRNA targets for hsa-miR-206 from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.002627 1414 0.02162 81 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.002714 2091 0.02162 81 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 0.002692 437 0.02162 81 microRNA targets for hsa-miR-337-5p from miranda.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.002591 338 0.02162 81 microRNA targets for hsa-miR-518b from miranda.targets www.mirbase.org...
Null hsa-miR-605 View Gene Set 0.002653 1295 0.02162 81 microRNA targets for hsa-miR-605 from miranda.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 0.002778 1919 0.02187 86 microRNA targets for hsa-miR-452 from miranda.targets www.mirbase.org...
Null hsa-miR-28-3p View Gene Set 0.003027 838 0.02356 87 microRNA targets for hsa-miR-28-3p from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.0032 1682 0.02462 88 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.00331 2173 0.02463 89 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.00331 2173 0.02463 89 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.003258 1946 0.02463 89 microRNA targets for hsa-miR-181a from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.003384 2324 0.0249 92 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 0.00342 2322 0.0249 92 microRNA targets for hsa-miR-607 from miranda.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.003505 1236 0.02524 94 microRNA targets for hsa-miR-361-5p from miranda.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.003633 1053 0.02589 95 microRNA targets for hsa-miR-21 from miranda.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.003712 1239 0.02617 96 microRNA targets for hsa-miR-183 from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.003765 2189 0.02621 97 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.003872 1794 0.02621 97 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-518e View Gene Set 0.003825 355 0.02621 97 microRNA targets for hsa-miR-518e from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 0.003843 2745 0.02621 97 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.004057 1590 0.0272 101 microRNA targets for hsa-miR-520a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 0.004312 1886 0.02862 102 microRNA targets for hsa-miR-494 from miranda.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 0.004659 1660 0.03062 103 microRNA targets for hsa-miR-448 from miranda.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.004817 1431 0.03136 104 microRNA targets for hsa-miR-603 from miranda.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 0.00528 1821 0.03404 105 microRNA targets for hsa-miR-515-5p from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.005437 2025 0.03473 106 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1324 View Gene Set 0.005533 2051 0.03477 107 microRNA targets for hsa-miR-1324 from miranda.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.005547 2118 0.03477 107 microRNA targets for hsa-miR-181b from miranda.targets www.mirbase.org...
Null hsa-miR-548e View Gene Set 0.005597 2325 0.03477 107 microRNA targets for hsa-miR-548e from miranda.targets www.mirbase.org...
Null hsa-miR-1323 View Gene Set 0.005768 2071 0.0355 110 microRNA targets for hsa-miR-1323 from miranda.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.00583 1323 0.03552 111 microRNA targets for hsa-miR-146a from miranda.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 0.005877 1335 0.03552 111 microRNA targets for hsa-miR-613 from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.005996 1644 0.0358 113 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.006028 2061 0.0358 113 microRNA targets for hsa-miR-520d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-518d-3p View Gene Set 0.006282 393 0.03698 115 microRNA targets for hsa-miR-518d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.006369 2124 0.03717 116 microRNA targets for hsa-miR-330-3p from miranda.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.006531 1504 0.03779 117 microRNA targets for hsa-miR-148a from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.007068 1861 0.04055 118 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.007698 1319 0.0438 119 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-1277 View Gene Set 0.007933 688 0.04475 120 microRNA targets for hsa-miR-1277 from miranda.targets www.mirbase.org...
Null hsa-miR-1278 View Gene Set 0.008972 1219 0.04827 121 microRNA targets for hsa-miR-1278 from miranda.targets www.mirbase.org...
Null hsa-miR-1284 View Gene Set 0.008979 1108 0.04827 121 microRNA targets for hsa-miR-1284 from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.008768 1858 0.04827 121 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.008985 2054 0.04827 121 microRNA targets for hsa-miR-302a from miranda.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 0.008904 1044 0.04827 121 microRNA targets for hsa-miR-496 from miranda.targets www.mirbase.org...
Null hsa-miR-95 View Gene Set 0.008978 538 0.04827 121 microRNA targets for hsa-miR-95 from miranda.targets www.mirbase.org...
Null hsa-miR-591 View Gene Set 0.009349 632 0.04945 127 microRNA targets for hsa-miR-591 from miranda.targets www.mirbase.org...
Null hsa-miR-640 View Gene Set 0.0093 876 0.04945 127 microRNA targets for hsa-miR-640 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-let-7a* View Gene Set 4.392e-09 772 1.561e-06 1 microRNA targets for hsa-let-7a* from mirbase.targets www.mirbase.org...
Null hsa-let-7b* View Gene Set 3.472e-09 772 1.561e-06 1 microRNA targets for hsa-let-7b* from mirbase.targets www.mirbase.org...
Null hsa-let-7f-1* View Gene Set 1.444e-07 751 3.423e-05 3 microRNA targets for hsa-let-7f-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-222 View Gene Set 4.096e-07 714 7.281e-05 4 microRNA targets for hsa-miR-222 from mirbase.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 1.49e-06 672 0.0002119 5 microRNA targets for hsa-miR-300 from mirbase.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 2.71e-06 809 0.0003211 6 microRNA targets for hsa-miR-130b from mirbase.targets www.mirbase.org...
Null hsa-miR-888* View Gene Set 3.913e-06 572 0.0003825 7 microRNA targets for hsa-miR-888* from mirbase.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 4.303e-06 650 0.0003825 7 microRNA targets for hsa-miR-889 from mirbase.targets www.mirbase.org...
Null hsa-let-7d* View Gene Set 6.455e-06 781 0.00051 9 microRNA targets for hsa-let-7d* from mirbase.targets www.mirbase.org...
Null hsa-let-7f-2* View Gene Set 7.838e-06 820 0.0005231 10 microRNA targets for hsa-let-7f-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 8.093e-06 643 0.0005231 10 microRNA targets for hsa-miR-381 from mirbase.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 1.421e-05 709 0.000842 12 microRNA targets for hsa-miR-191 from mirbase.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 1.918e-05 795 0.001049 13 microRNA targets for hsa-miR-337-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 2.569e-05 763 0.001217 14 microRNA targets for hsa-miR-301b from mirbase.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 2.516e-05 793 0.001217 14 microRNA targets for hsa-miR-429 from mirbase.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 3.316e-05 807 0.001474 16 microRNA targets for hsa-miR-130a from mirbase.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 3.598e-05 792 0.001505 17 microRNA targets for hsa-miR-152 from mirbase.targets www.mirbase.org...
Null hsa-miR-583 View Gene Set 4.078e-05 632 0.001611 18 microRNA targets for hsa-miR-583 from mirbase.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 4.548e-05 798 0.001702 19 microRNA targets for hsa-miR-301a from mirbase.targets www.mirbase.org...
Null hsa-let-7e* View Gene Set 7.842e-05 790 0.002788 20 microRNA targets for hsa-let-7e* from mirbase.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 9.024e-05 651 0.003055 21 microRNA targets for hsa-miR-561 from mirbase.targets www.mirbase.org...
Null hsa-miR-30a* View Gene Set 0.0001258 726 0.004066 22 microRNA targets for hsa-miR-30a* from mirbase.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 0.0001393 921 0.004128 23 microRNA targets for hsa-miR-518c from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 0.0001343 978 0.004128 23 microRNA targets for hsa-miR-548d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.000157 708 0.004465 25 microRNA targets for hsa-miR-524-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-146a* View Gene Set 0.0001902 556 0.005201 26 microRNA targets for hsa-miR-146a* from mirbase.targets www.mirbase.org...
Null hsa-miR-200a* View Gene Set 0.0002371 623 0.006244 27 microRNA targets for hsa-miR-200a* from mirbase.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.0002984 795 0.007073 28 microRNA targets for hsa-miR-15b from mirbase.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.0002971 883 0.007073 28 microRNA targets for hsa-miR-518b from mirbase.targets www.mirbase.org...
Null hsa-miR-518d-3p View Gene Set 0.000297 916 0.007073 28 microRNA targets for hsa-miR-518d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.0003126 763 0.007169 31 microRNA targets for hsa-miR-548a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-221 View Gene Set 0.0003242 783 0.007203 32 microRNA targets for hsa-miR-221 from mirbase.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.000371 803 0.007759 33 microRNA targets for hsa-miR-19a from mirbase.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.0003649 603 0.007759 33 microRNA targets for hsa-miR-570 from mirbase.targets www.mirbase.org...
Null hsa-miR-488* View Gene Set 0.0003961 561 0.008046 35 microRNA targets for hsa-miR-488* from mirbase.targets www.mirbase.org...
Null hsa-miR-616* View Gene Set 0.000432 533 0.008533 36 microRNA targets for hsa-miR-616* from mirbase.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.0004735 677 0.008837 37 microRNA targets for hsa-miR-361-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 0.0004848 742 0.008837 37 microRNA targets for hsa-miR-590-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.0004781 770 0.008837 37 microRNA targets for hsa-miR-768-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-505 View Gene Set 0.0005136 690 0.009129 40 microRNA targets for hsa-miR-505 from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 0.0005387 818 0.009341 41 microRNA targets for hsa-miR-548b-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.0006004 871 0.01001 42 microRNA targets for hsa-miR-200c from mirbase.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 0.0006054 654 0.01001 42 microRNA targets for hsa-miR-655 from mirbase.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 0.0006604 771 0.01067 44 microRNA targets for hsa-miR-320 from mirbase.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.0007044 683 0.01113 45 microRNA targets for hsa-miR-802 from mirbase.targets www.mirbase.org...
Null hsa-miR-367* View Gene Set 0.0007279 490 0.01125 46 microRNA targets for hsa-miR-367* from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 0.0007615 863 0.01152 47 microRNA targets for hsa-miR-548c-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.0008285 803 0.01227 48 microRNA targets for hsa-miR-212 from mirbase.targets www.mirbase.org...
Null hsa-miR-7-2* View Gene Set 0.0008501 531 0.01234 49 microRNA targets for hsa-miR-7-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.0008704 796 0.01238 50 microRNA targets for hsa-miR-144 from mirbase.targets www.mirbase.org...
Null hsa-let-7i* View Gene Set 0.0009068 760 0.01264 51 microRNA targets for hsa-let-7i* from mirbase.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 0.0009256 731 0.01266 52 microRNA targets for hsa-miR-194 from mirbase.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.0009543 824 0.0128 53 microRNA targets for hsa-miR-455-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.0009741 854 0.01283 54 microRNA targets for hsa-miR-200b from mirbase.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 0.001119 756 0.01447 55 microRNA targets for hsa-miR-323-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-16-1* View Gene Set 0.001189 557 0.0151 56 microRNA targets for hsa-miR-16-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.001312 817 0.01636 57 microRNA targets for hsa-miR-15a from mirbase.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.001403 832 0.0172 58 microRNA targets for hsa-miR-148b from mirbase.targets www.mirbase.org...
Null hsa-miR-924 View Gene Set 0.001433 667 0.01726 59 microRNA targets for hsa-miR-924 from mirbase.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.001546 842 0.01756 60 microRNA targets for hsa-miR-181a from mirbase.targets www.mirbase.org...
Null hsa-miR-411* View Gene Set 0.001536 541 0.01756 60 microRNA targets for hsa-miR-411* from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.001556 795 0.01756 60 microRNA targets for hsa-miR-548d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.001539 699 0.01756 60 microRNA targets for hsa-miR-888 from mirbase.targets www.mirbase.org...
Null hsa-miR-629 View Gene Set 0.001696 768 0.01884 64 microRNA targets for hsa-miR-629 from mirbase.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 0.001994 463 0.02181 65 microRNA targets for hsa-miR-559 from mirbase.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 0.002025 837 0.02181 66 microRNA targets for hsa-miR-590-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.002171 855 0.02303 67 microRNA targets for hsa-miR-181c from mirbase.targets www.mirbase.org...
Null hsa-miR-371-5p View Gene Set 0.002203 779 0.02304 68 microRNA targets for hsa-miR-371-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 0.002268 761 0.02337 69 microRNA targets for hsa-miR-499-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-518e View Gene Set 0.002324 923 0.02361 70 microRNA targets for hsa-miR-518e from mirbase.targets www.mirbase.org...
Null hsa-miR-138-1* View Gene Set 0.00239 540 0.02393 71 microRNA targets for hsa-miR-138-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.002443 796 0.02412 72 microRNA targets for hsa-miR-495 from mirbase.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.002621 864 0.02553 73 microRNA targets for hsa-miR-181d from mirbase.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.002708 724 0.02602 74 microRNA targets for hsa-miR-21 from mirbase.targets www.mirbase.org...
Null hsa-miR-132 View Gene Set 0.002885 810 0.02735 75 microRNA targets for hsa-miR-132 from mirbase.targets www.mirbase.org...
Null hsa-miR-302d* View Gene Set 0.003131 693 0.02749 76 microRNA targets for hsa-miR-302d* from mirbase.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.0031 770 0.02749 76 microRNA targets for hsa-miR-30d from mirbase.targets www.mirbase.org...
Null hsa-miR-30d* View Gene Set 0.003127 717 0.02749 76 microRNA targets for hsa-miR-30d* from mirbase.targets www.mirbase.org...
Null hsa-miR-30e* View Gene Set 0.002997 696 0.02749 76 microRNA targets for hsa-miR-30e* from mirbase.targets www.mirbase.org...
Null hsa-miR-551b* View Gene Set 0.003059 473 0.02749 76 microRNA targets for hsa-miR-551b* from mirbase.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 0.003046 596 0.02749 76 microRNA targets for hsa-miR-606 from mirbase.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.00336 659 0.0282 82 microRNA targets for hsa-miR-1 from mirbase.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.003426 719 0.0282 82 microRNA targets for hsa-miR-105 from mirbase.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.003279 696 0.0282 82 microRNA targets for hsa-miR-26b from mirbase.targets www.mirbase.org...
Null hsa-miR-302a* View Gene Set 0.003329 644 0.0282 82 microRNA targets for hsa-miR-302a* from mirbase.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.003425 746 0.0282 82 microRNA targets for hsa-miR-376a from mirbase.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 0.003451 689 0.0282 82 microRNA targets for hsa-miR-487a from mirbase.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.003519 832 0.02843 88 microRNA targets for hsa-miR-520d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-10a* View Gene Set 0.00394 585 0.0307 89 microRNA targets for hsa-miR-10a* from mirbase.targets www.mirbase.org...
Null hsa-miR-200b* View Gene Set 0.004009 660 0.0307 89 microRNA targets for hsa-miR-200b* from mirbase.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.003972 769 0.0307 89 microRNA targets for hsa-miR-454 from mirbase.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.004015 767 0.0307 89 microRNA targets for hsa-miR-491-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-598 View Gene Set 0.004006 720 0.0307 89 microRNA targets for hsa-miR-598 from mirbase.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.004127 649 0.03121 94 microRNA targets for hsa-miR-568 from mirbase.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 0.004209 818 0.03128 95 microRNA targets for hsa-miR-101 from mirbase.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.004223 828 0.03128 95 microRNA targets for hsa-miR-29a from mirbase.targets www.mirbase.org...
Null hsa-miR-376c View Gene Set 0.004315 763 0.03163 97 microRNA targets for hsa-miR-376c from mirbase.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.00437 789 0.03171 98 microRNA targets for hsa-miR-19b from mirbase.targets www.mirbase.org...
Null hsa-miR-489 View Gene Set 0.004485 763 0.03221 99 microRNA targets for hsa-miR-489 from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.004568 801 0.03248 100 microRNA targets for hsa-miR-548c-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.004642 780 0.03268 101 microRNA targets for hsa-miR-16 from mirbase.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.005231 800 0.03611 102 microRNA targets for hsa-miR-148a from mirbase.targets www.mirbase.org...
Null hsa-miR-329 View Gene Set 0.005216 652 0.03611 102 microRNA targets for hsa-miR-329 from mirbase.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.005333 739 0.03611 104 microRNA targets for hsa-miR-587 from mirbase.targets www.mirbase.org...
Null hsa-miR-640 View Gene Set 0.005297 704 0.03611 104 microRNA targets for hsa-miR-640 from mirbase.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.005401 718 0.03623 106 microRNA targets for hsa-miR-26a from mirbase.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 0.005701 799 0.03788 107 microRNA targets for hsa-miR-30c from mirbase.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 0.005916 570 0.03895 108 microRNA targets for hsa-miR-9* from mirbase.targets www.mirbase.org...
Null hsa-miR-7-1* View Gene Set 0.00616 524 0.04018 109 microRNA targets for hsa-miR-7-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.006811 848 0.04402 110 microRNA targets for hsa-miR-29b from mirbase.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.007358 707 0.04713 111 microRNA targets for hsa-miR-871 from mirbase.targets www.mirbase.org...
Null hsa-miR-518a-3p View Gene Set 0.007502 925 0.04763 112 microRNA targets for hsa-miR-518a-3p from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548d-3p View Gene Set 7.926e-10 1107 4.383e-07 1 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 2.825e-07 1804 7.81e-05 2 microRNA targets for hsa-miR-548c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 4.884e-07 2046 9.004e-05 3 microRNA targets for hsa-miR-590-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 6.942e-06 432 0.0006502 4 microRNA targets for hsa-miR-124 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 7.054e-06 1119 0.0006502 4 microRNA targets for hsa-miR-513-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 6.333e-06 977 0.0006502 4 microRNA targets for hsa-miR-559 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 1.727e-05 439 0.001365 7 microRNA targets for hsa-miR-506 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 2.296e-05 1020 0.001509 8 microRNA targets for hsa-miR-186 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 2.455e-05 983 0.001509 8 microRNA targets for hsa-miR-570 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 3.071e-05 423 0.001544 10 microRNA targets for hsa-miR-9 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 2.96e-05 1362 0.001544 10 microRNA targets for hsa-miR-944 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 4.846e-05 435 0.002184 12 microRNA targets for hsa-miR-372 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 5.135e-05 1120 0.002184 12 microRNA targets for hsa-miR-548a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 5.616e-05 736 0.002218 14 microRNA targets for hsa-miR-106b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 6.681e-05 1193 0.002463 15 microRNA targets for hsa-miR-561 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 8.626e-05 370 0.002689 16 microRNA targets for hsa-miR-302c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 8.72e-05 468 0.002689 16 microRNA targets for hsa-miR-520a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 8.751e-05 451 0.002689 16 microRNA targets for hsa-miR-520b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.0001022 456 0.002975 19 microRNA targets for hsa-miR-520d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 0.0001187 1157 0.003282 20 microRNA targets for hsa-miR-548b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.0001492 781 0.003489 21 microRNA targets for hsa-miR-106a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-193a-3p View Gene Set 0.0001694 141 0.003489 21 microRNA targets for hsa-miR-193a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.0001695 452 0.003489 21 microRNA targets for hsa-miR-520c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 0.0001704 443 0.003489 21 microRNA targets for hsa-miR-520e from mirtarget2.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 0.000133 862 0.003489 21 microRNA targets for hsa-miR-524-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.0001422 1147 0.003489 21 microRNA targets for hsa-miR-548d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 0.0001556 1137 0.003489 21 microRNA targets for hsa-miR-607 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.00019 1151 0.003752 28 microRNA targets for hsa-miR-548c-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.000217 887 0.004138 29 microRNA targets for hsa-miR-181b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.0002286 882 0.004215 30 microRNA targets for hsa-miR-181d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-193b View Gene Set 0.0002769 137 0.00474 31 microRNA targets for hsa-miR-193b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.0002829 404 0.00474 31 microRNA targets for hsa-miR-373 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-640 View Gene Set 0.0002667 166 0.00474 31 microRNA targets for hsa-miR-640 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.0003389 754 0.005512 34 microRNA targets for hsa-miR-20a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.0003745 714 0.005917 35 microRNA targets for hsa-miR-519d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 0.0003998 682 0.005989 36 microRNA targets for hsa-miR-330-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.0004007 283 0.005989 36 microRNA targets for hsa-miR-935 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.0005209 909 0.00758 38 microRNA targets for hsa-miR-181c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.0005471 784 0.007758 39 microRNA targets for hsa-miR-17 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.0005768 795 0.007974 40 microRNA targets for hsa-miR-20b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.0006241 382 0.008309 41 microRNA targets for hsa-miR-302a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.000631 948 0.008309 41 microRNA targets for hsa-miR-338-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.0006836 826 0.008792 43 microRNA targets for hsa-miR-520d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 0.0007927 418 0.009963 44 microRNA targets for hsa-miR-302d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.0009637 879 0.01159 45 microRNA targets for hsa-miR-181a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.0009542 775 0.01159 45 microRNA targets for hsa-miR-93 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.001156 618 0.0136 47 microRNA targets for hsa-miR-522 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.001209 406 0.01393 48 microRNA targets for hsa-miR-302b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.001351 446 0.01525 49 microRNA targets for hsa-miR-603 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 0.001428 589 0.0158 50 microRNA targets for hsa-miR-200a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-146b-3p View Gene Set 0.00174 106 0.0185 51 microRNA targets for hsa-miR-146b-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-634 View Gene Set 0.001737 215 0.0185 51 microRNA targets for hsa-miR-634 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-122 View Gene Set 0.001925 114 0.02008 53 microRNA targets for hsa-miR-122 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.002307 450 0.02363 54 microRNA targets for hsa-miR-888 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.002601 498 0.02587 55 microRNA targets for hsa-miR-26a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.002619 544 0.02587 55 microRNA targets for hsa-miR-381 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.002913 574 0.02777 57 microRNA targets for hsa-miR-141 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 0.002868 600 0.02777 57 microRNA targets for hsa-miR-545 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 0.003034 334 0.02843 59 microRNA targets for hsa-miR-421 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.003101 659 0.02858 60 microRNA targets for hsa-miR-641 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.003457 256 0.03134 61 microRNA targets for hsa-miR-219-2-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 0.003643 820 0.03249 62 microRNA targets for hsa-miR-655 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.003726 493 0.03271 63 microRNA targets for hsa-miR-26b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.004144 875 0.03581 64 microRNA targets for hsa-miR-23b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-588 View Gene Set 0.004318 184 0.03618 65 microRNA targets for hsa-miR-588 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.004299 333 0.03618 65 microRNA targets for hsa-miR-768-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.004995 858 0.04062 67 microRNA targets for hsa-miR-23a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 0.004923 528 0.04062 67 microRNA targets for hsa-miR-300 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 0.005102 428 0.04089 69 microRNA targets for hsa-miR-802 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.005189 1246 0.04099 70 microRNA targets for hsa-miR-495 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-543 View Gene Set 0.005542 710 0.04316 71 microRNA targets for hsa-miR-543 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.005748 524 0.04388 72 microRNA targets for hsa-miR-105 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.005836 649 0.04388 72 microRNA targets for hsa-miR-144 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.005872 283 0.04388 72 microRNA targets for hsa-miR-491-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.006284 570 0.04634 75 microRNA targets for hsa-miR-871 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-609 View Gene Set 0.006529 85 0.04751 76 microRNA targets for hsa-miR-609 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.006717 231 0.04768 77 microRNA targets for hsa-miR-24 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 0.006726 518 0.04768 77 microRNA targets for hsa-miR-27a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.007384 427 0.04979 79 microRNA targets for hsa-miR-155 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.00736 321 0.04979 79 microRNA targets for hsa-miR-361-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 0.007273 696 0.04979 79 microRNA targets for hsa-miR-494 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 0.007274 625 0.04979 79 microRNA targets for hsa-miR-579 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 0.007487 680 0.04988 83 microRNA targets for hsa-miR-30a from mirtarget2.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-124a View Gene Set 0.0001126 624 0.008359 1 microRNA targets for hsa-miR-124a from pictar.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 6.441e-05 441 0.008359 1 microRNA targets for hsa-miR-186 from pictar.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0001494 501 0.008359 1 microRNA targets for hsa-miR-26a from pictar.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 0.0001878 306 0.008359 1 microRNA targets for hsa-miR-9* from pictar.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0003173 508 0.009415 5 microRNA targets for hsa-miR-26b from pictar.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.0002751 670 0.009415 5 microRNA targets for hsa-miR-9 from pictar.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 0.00189 552 0.02771 7 microRNA targets for hsa-miR-182 from pictar.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.001905 465 0.02771 7 microRNA targets for hsa-miR-200b from pictar.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.001905 465 0.02771 7 microRNA targets for hsa-miR-200c from pictar.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.001994 374 0.02771 7 microRNA targets for hsa-miR-302a from pictar.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.00137 351 0.02771 7 microRNA targets for hsa-miR-302b from pictar.targets www.mirbase.org...
Null hsa-miR-302d View Gene Set 0.001831 375 0.02771 7 microRNA targets for hsa-miR-302d from pictar.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.002024 243 0.02771 7 microRNA targets for hsa-miR-34b from pictar.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.003373 305 0.04289 14 microRNA targets for hsa-miR-24 from pictar.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.004208 500 0.04406 15 microRNA targets for hsa-miR-181a from pictar.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.004208 499 0.04406 15 microRNA targets for hsa-miR-181c from pictar.targets www.mirbase.org...
Null hsa-miR-330 View Gene Set 0.003801 352 0.04406 15 microRNA targets for hsa-miR-330 from pictar.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.004517 500 0.04466 18 microRNA targets for hsa-miR-181b from pictar.targets www.mirbase.org...

Gene Set Collection: tarbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1 View Gene Set 0.0004676 149 0.02169 1 microRNA targets for hsa-miR-1 from tarbase.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.001276 133 0.02169 1 microRNA targets for hsa-miR-124 from tarbase.targets www.mirbase.org...
Null hsa-miR-30a-3p View Gene Set 0.001064 7 0.02169 1 microRNA targets for hsa-miR-30a-3p from tarbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.003905 91 0.04979 4 microRNA targets for hsa-miR-16 from tarbase.targets www.mirbase.org...

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-124 View Gene Set 6.026e-05 1299 0.004901 1 microRNA targets for hsa-miR-124 from targetscan.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 6.026e-05 1299 0.004901 1 microRNA targets for hsa-miR-506 from targetscan.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 3.023e-05 936 0.004901 1 microRNA targets for hsa-miR-9 from targetscan.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.001782 583 0.02949 4 microRNA targets for hsa-miR-1 from targetscan.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.001768 646 0.02949 4 microRNA targets for hsa-miR-1297 from targetscan.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.001769 295 0.02949 4 microRNA targets for hsa-miR-183 from targetscan.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 0.001782 583 0.02949 4 microRNA targets for hsa-miR-206 from targetscan.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.001768 646 0.02949 4 microRNA targets for hsa-miR-26a from targetscan.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.001768 646 0.02949 4 microRNA targets for hsa-miR-26b from targetscan.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.001875 539 0.02949 4 microRNA targets for hsa-miR-320a from targetscan.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.001875 539 0.02949 4 microRNA targets for hsa-miR-320b from targetscan.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.001875 539 0.02949 4 microRNA targets for hsa-miR-320c from targetscan.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.001875 539 0.02949 4 microRNA targets for hsa-miR-320d from targetscan.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.001934 963 0.02949 4 microRNA targets for hsa-miR-340 from targetscan.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.001319 570 0.02949 4 microRNA targets for hsa-miR-495 from targetscan.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 0.001782 583 0.02949 4 microRNA targets for hsa-miR-613 from targetscan.targets www.mirbase.org...
Null hsa-miR-122 View Gene Set 0.002331 124 0.03267 17 microRNA targets for hsa-miR-122 from targetscan.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 0.002544 502 0.03267 17 microRNA targets for hsa-miR-133a from targetscan.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.002544 502 0.03267 17 microRNA targets for hsa-miR-133b from targetscan.targets www.mirbase.org...

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 6.127e-07 192 0.001259 1 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-9 View Gene Set 4.856e-06 142 0.004987 2 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-369-3p View Gene Set 2.303e-05 46 0.01577 3 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-369-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-24 View Gene Set 5.3e-05 45 0.01697 4 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-24 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsIntersection.hsa-miR-155 View Gene Set 7.434e-05 17 0.01697 4 microRNA targets for miranda.mirtarget2.tarbase.targetsIntersection.hsa-miR-155 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 View Gene Set 7.124e-05 243 0.01697 4 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-26b View Gene Set 5.587e-05 210 0.01697 4 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-26b from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-369-3p View Gene Set 5.838e-05 37 0.01697 4 microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-369-3p from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 4.723e-05 148 0.01697 4 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-655 View Gene Set 8.848e-05 96 0.01717 10 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-655 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-186 View Gene Set 0.0001185 117 0.01717 10 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-186 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-24 View Gene Set 0.0001157 50 0.01717 10 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-24 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302a View Gene Set 0.0001034 93 0.01717 10 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302a from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302c View Gene Set 0.0001114 88 0.01717 10 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302c from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302d View Gene Set 0.0001254 99 0.01717 10 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302d from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 0.0001467 77 0.01883 16 microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181c View Gene Set 0.0001765 120 0.02133 17 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181c from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-548a-3p View Gene Set 0.0002313 107 0.02639 18 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-548a-3p from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-122 View Gene Set 0.0002533 9 0.02738 19 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-122 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-935 View Gene Set 0.0003002 26 0.02802 20 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-935 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-193a-3p View Gene Set 0.0002968 36 0.02802 20 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-193a-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-193b View Gene Set 0.0002775 35 0.02802 20 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-193b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 View Gene Set 0.0003366 238 0.0288 23 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302b View Gene Set 0.000327 102 0.0288 23 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302b from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-372 View Gene Set 0.0003907 108 0.0321 25 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-372 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-26a View Gene Set 0.0004103 202 0.03241 26 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-26a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-152 View Gene Set 0.0005215 110 0.03826 27 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-152 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-26a View Gene Set 0.0005092 153 0.03826 27 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-26a from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-106b View Gene Set 0.000664 281 0.04703 29 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-106b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-302c View Gene Set 0.0006873 96 0.04706 30 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-302c from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-26a View Gene Set 0.0007427 153 0.04921 31 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-26a from miRNAtargetIntersection www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-590-3p View Gene Set 1.61e-11 4554 3.724e-08 1 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-5p View Gene Set 3.473e-11 3746 3.929e-08 2 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548a-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-3p View Gene Set 5.094e-11 3139 3.929e-08 2 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548b-5p View Gene Set 1.02e-10 3963 5.901e-08 4 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548b-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p View Gene Set 1.57e-10 4420 7.266e-08 5 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-561 View Gene Set 2.496e-10 3650 9.626e-08 6 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-561 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-590-3p View Gene Set 3.378e-10 4159 1.117e-07 7 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-3p View Gene Set 5.054e-10 4092 1.462e-07 8 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p View Gene Set 9.833e-09 2774 2.528e-06 9 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-590-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-5p View Gene Set 2.076e-08 3706 4.804e-06 10 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548c-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-300 View Gene Set 2.307e-08 2370 4.854e-06 11 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-300 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-300 View Gene Set 2.761e-08 2254 5.324e-06 12 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-300 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-5p View Gene Set 3.251e-08 4039 5.787e-06 13 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-548d-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-381 View Gene Set 3.883e-08 2353 6.418e-06 14 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-381 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-381 View Gene Set 4.211e-08 2235 6.497e-06 15 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-381 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-222 View Gene Set 5.614e-08 899 8.12e-06 16 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-300 View Gene Set 1.316e-07 1536 1.792e-05 17 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-300 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-606 View Gene Set 1.43e-07 1506 1.838e-05 18 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-606 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-559 View Gene Set 3.405e-07 3456 4.147e-05 19 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-559 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-222 View Gene Set 5.44e-07 1089 6.294e-05 20 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-337-5p View Gene Set 9.888e-07 1124 0.000109 21 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-337-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-130b View Gene Set 1.1e-06 1525 0.0001157 22 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-26b View Gene Set 1.153e-06 2177 0.000116 23 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-381 View Gene Set 1.31e-06 2110 0.0001213 24 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-381 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-130b View Gene Set 1.279e-06 1408 0.0001213 24 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26b View Gene Set 1.694e-06 1882 0.0001508 26 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-570 View Gene Set 1.768e-06 3769 0.0001516 27 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-570 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-301b View Gene Set 2.489e-06 1487 0.0002057 28 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-26b View Gene Set 2.909e-06 2088 0.0002171 29 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-381 View Gene Set 2.849e-06 1518 0.0002171 29 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-381 from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 2.859e-06 1909 0.0002171 29 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-524-5p View Gene Set 3.004e-06 3213 0.0002172 32 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-524-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-655 View Gene Set 3.147e-06 2490 0.0002207 33 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-655 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-300 View Gene Set 3.257e-06 2113 0.0002216 34 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-300 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-124 View Gene Set 3.621e-06 1174 0.0002394 35 microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-144 View Gene Set 4.457e-06 2413 0.0002788 36 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-144 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-200b View Gene Set 4.401e-06 2373 0.0002788 36 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-200b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-222 View Gene Set 4.614e-06 1027 0.000281 38 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-222 View Gene Set 4.798e-06 1505 0.0002847 39 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-222 View Gene Set 5.012e-06 1531 0.0002867 40 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-191 View Gene Set 5.08e-06 752 0.0002867 40 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-191 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-568 View Gene Set 5.311e-06 2599 0.0002926 42 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-568 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-26b View Gene Set 5.677e-06 1890 0.0003055 43 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-142-5p View Gene Set 6.704e-06 2782 0.0003526 44 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-186 View Gene Set 7.043e-06 1788 0.0003622 45 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-130b View Gene Set 7.319e-06 1578 0.0003682 46 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130a View Gene Set 7.988e-06 2289 0.0003933 47 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-222 View Gene Set 8.552e-06 982 0.0004123 48 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301a View Gene Set 9.495e-06 2688 0.000417 49 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-130a View Gene Set 9.199e-06 2390 0.000417 49 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-26b View Gene Set 9.402e-06 1361 0.000417 49 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-130a View Gene Set 9.552e-06 1132 0.000417 49 microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-124 View Gene Set 9.285e-06 1965 0.000417 49 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-491-3p View Gene Set 1.115e-05 1794 0.0004231 54 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-491-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-30d View Gene Set 1.062e-05 2216 0.0004231 54 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-130b View Gene Set 1.052e-05 2420 0.0004231 54 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-26b View Gene Set 1.024e-05 2211 0.0004231 54 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-454 View Gene Set 1.115e-05 2596 0.0004231 54 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-1 View Gene Set 1.006e-05 1233 0.0004231 54 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 1.11e-05 1260 0.0004231 54 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 1.079e-05 1448 0.0004231 54 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-186 View Gene Set 1.155e-05 3195 0.0004241 62 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-301a View Gene Set 1.143e-05 1528 0.0004241 62 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-130a View Gene Set 1.178e-05 2357 0.0004259 64 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130b View Gene Set 1.35e-05 2311 0.0004807 65 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-429 View Gene Set 1.396e-05 2506 0.0004894 66 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-429 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-191 View Gene Set 1.419e-05 753 0.0004901 67 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-191 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-130b View Gene Set 1.514e-05 2375 0.0005005 68 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-130b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-130a View Gene Set 1.507e-05 2199 0.0005005 68 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-130a View Gene Set 1.483e-05 1511 0.0005005 68 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-144 View Gene Set 1.602e-05 2497 0.0005221 71 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30d View Gene Set 1.688e-05 2170 0.0005427 72 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-17 View Gene Set 1.806e-05 3143 0.0005498 73 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-17 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-301b View Gene Set 1.784e-05 2745 0.0005498 73 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-340 View Gene Set 1.803e-05 3195 0.0005498 73 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-181b View Gene Set 1.758e-05 1794 0.0005498 73 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-181b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-454 View Gene Set 1.865e-05 2494 0.0005569 77 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-421 View Gene Set 1.901e-05 1830 0.0005569 77 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-421 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-26a View Gene Set 1.893e-05 1142 0.0005569 77 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-30d View Gene Set 1.926e-05 2339 0.0005571 80 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-340 View Gene Set 1.958e-05 3291 0.0005593 81 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-301a View Gene Set 2.074e-05 2780 0.0005783 82 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-340 View Gene Set 2.065e-05 2961 0.0005783 82 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301b View Gene Set 2.15e-05 2655 0.0005853 84 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-421 View Gene Set 2.135e-05 2238 0.0005853 84 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-421 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-26a View Gene Set 2.278e-05 1388 0.000599 86 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-130a View Gene Set 2.243e-05 1411 0.000599 86 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-1 View Gene Set 2.254e-05 832 0.000599 86 microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-5p View Gene Set 2.374e-05 2931 0.0006173 89 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-320 View Gene Set 2.434e-05 1474 0.0006258 90 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-320 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-144 View Gene Set 2.486e-05 1652 0.0006322 91 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-26b View Gene Set 2.648e-05 1906 0.000666 92 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-191 View Gene Set 3.076e-05 756 0.0007653 93 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-191 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-518c View Gene Set 3.18e-05 1471 0.0007827 94 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-518c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-222 View Gene Set 3.292e-05 1416 0.0008004 95 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-454 View Gene Set 3.321e-05 2229 0.0008004 95 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-130a View Gene Set 3.477e-05 1584 0.0008295 97 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-522 View Gene Set 3.654e-05 2524 0.0008316 98 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-522 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-186 View Gene Set 3.64e-05 3176 0.0008316 98 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-191 View Gene Set 3.609e-05 1229 0.0008316 98 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-191 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-130a View Gene Set 3.666e-05 1405 0.0008316 98 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-181c View Gene Set 3.572e-05 1790 0.0008316 98 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-26a View Gene Set 3.79e-05 2119 0.0008514 103 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-1 View Gene Set 3.838e-05 2270 0.000854 104 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-373 View Gene Set 3.96e-05 2708 0.0008727 105 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-373 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-768-3p View Gene Set 4.115e-05 2594 0.0008984 106 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-768-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 4.415e-05 2458 0.0009549 107 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-1 View Gene Set 4.663e-05 1078 0.0009991 108 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-30b View Gene Set 4.734e-05 2140 0.001005 109 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301b View Gene Set 5.181e-05 2363 0.00109 110 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301b from miRNAtargetUnion www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-1 View Gene Set 5.342e-05 783 0.001114 111 microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-152 View Gene Set 5.521e-05 1300 0.001141 112 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-152 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-30d View Gene Set 5.616e-05 1845 0.00115 113 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-373 View Gene Set 5.711e-05 2793 0.001159 114 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-373 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p View Gene Set 5.849e-05 2649 0.001177 115 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-142-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-1 View Gene Set 5.97e-05 2000 0.001181 116 microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-130a View Gene Set 5.93e-05 1228 0.001181 116 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301a View Gene Set 6.153e-05 2387 0.001207 118 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-301a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-191 View Gene Set 6.302e-05 1242 0.001225 119 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-191 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-221 View Gene Set 6.827e-05 967 0.001306 120 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-221 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-26b View Gene Set 6.824e-05 1405 0.001306 120 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-26b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-361-5p View Gene Set 7.152e-05 1780 0.001356 122 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-361-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30a View Gene Set 7.624e-05 2243 0.001389 123 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-30a View Gene Set 7.451e-05 2421 0.001389 123 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-30a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-421 View Gene Set 7.495e-05 2222 0.001389 123 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-421 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-373 View Gene Set 7.576e-05 2213 0.001389 123 microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-373 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-181a View Gene Set 7.618e-05 1763 0.001389 123 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-181a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-361-5p View Gene Set 7.865e-05 1844 0.001422 128 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-361-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-30a View Gene Set 8.013e-05 2127 0.001426 129 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-30a from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-1 View Gene Set 7.963e-05 1256 0.001426 129 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-20a View Gene Set 8.274e-05 3072 0.001461 131 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-20a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-191 View Gene Set 8.548e-05 1236 0.001476 132 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-191 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-1 View Gene Set 8.484e-05 2328 0.001476 132 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-1 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-9 View Gene Set 8.535e-05 1730 0.001476 132 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-106a View Gene Set 8.946e-05 2972 0.001494 135 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-30c View Gene Set 9.268e-05 2467 0.001494 135 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-30c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181c View Gene Set 9.187e-05 2256 0.001494 135 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-181c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-200b View Gene Set 8.715e-05 2083 0.001494 135 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-200b from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-186 View Gene Set 9.296e-05 2993 0.001494 135 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-30d View Gene Set 9.054e-05 1968 0.001494 135 microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-106a View Gene Set 8.902e-05 1450 0.001494 135 microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-222 View Gene Set 9.059e-05 886 0.001494 135 microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-506 View Gene Set 8.824e-05 1985 0.001494 135 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-506 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-26a View Gene Set 9.105e-05 1416 0.001494 135 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-30b View Gene Set 9.493e-05 2390 0.001515 145 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30b View Gene Set 9.64e-05 2092 0.001528 146 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-200c View Gene Set 9.841e-05 1220 0.001549 147 microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-200c from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-30e View Gene Set 9.92e-05 2586 0.001551 148 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-30e from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-186 View Gene Set 0.0001004 3330 0.001559 149 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-802 View Gene Set 0.0001019 2387 0.001566 150 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-802 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-30b View Gene Set 0.0001035 2518 0.001566 150 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-372 View Gene Set 0.0001034 1009 0.001566 150 microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-372 from miRNAtargetUnion www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-186 View Gene Set 0.0001033 1563 0.001566 150 microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200b View Gene Set 0.0001062 2444 0.001596 154 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-200b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-891b View Gene Set 0.0001085 1644 0.001614 155 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-891b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30d View Gene Set 0.0001088 1926 0.001614 155 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-520a-3p View Gene Set 0.0001102 1582 0.001625 157 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-520a-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-124 View Gene Set 0.0001117 2020 0.001635 158 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-340 View Gene Set 0.0001187 3099 0.001695 159 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-373 View Gene Set 0.0001178 2615 0.001695 159 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-373 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-30d View Gene Set 0.0001185 1665 0.001695 159 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-30d View Gene Set 0.0001179 1780 0.001695 159 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-30d from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-19a View Gene Set 0.0001305 2700 0.001766 163 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-19a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-20a View Gene Set 0.0001307 3127 0.001766 163 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-20a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30b View Gene Set 0.0001321 2355 0.001766 163 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-603 View Gene Set 0.0001259 2028 0.001766 163 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-603 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-935 View Gene Set 0.0001307 1566 0.001766 163 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-935 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26a View Gene Set 0.0001256 1800 0.001766 163 microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-373 View Gene Set 0.0001315 2291 0.001766 163 microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-373 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-152 View Gene Set 0.0001287 1332 0.001766 163 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-152 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-222 View Gene Set 0.0001261 1084 0.001766 163 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-222 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-454 View Gene Set 0.0001302 1460 0.001766 163 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-454 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-9 View Gene Set 0.0001312 1733 0.001766 163 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-9 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-518d-3p View Gene Set 0.0001356 1213 0.001772 174 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-518d-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-520d-5p View Gene Set 0.0001341 2818 0.001772 174 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-520d-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-152 View Gene Set 0.0001351 2141 0.001772 174 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-152 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-19a View Gene Set 0.0001339 1473 0.001772 174 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-19a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-106b View Gene Set 0.0001381 1796 0.001795 178 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-106b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-106b View Gene Set 0.0001397 2713 0.0018 179 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-106b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-186 View Gene Set 0.0001408 3166 0.0018 179 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-186 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-372 View Gene Set 0.0001406 1381 0.0018 179 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-372 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30e View Gene Set 0.0001437 2426 0.001821 182 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-30e from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-499-5p View Gene Set 0.000144 1124 0.001821 182 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-499-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-373 View Gene Set 0.0001461 2363 0.001837 184 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-373 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-106a View Gene Set 0.00015 2750 0.001876 185 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-106a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-144 View Gene Set 0.0001555 2184 0.001934 186 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-144 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-26a View Gene Set 0.0001587 2154 0.001955 187 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-361-5p View Gene Set 0.0001588 1013 0.001955 187 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-361-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-181d View Gene Set 0.0001615 1978 0.001977 189 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-181d from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-16 View Gene Set 0.0001631 1638 0.001986 190 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-16 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-505 View Gene Set 0.0001697 1707 0.002056 191 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-505 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-19a View Gene Set 0.0001761 2708 0.002111 192 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-19a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130a View Gene Set 0.0001758 1972 0.002111 192 microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-130a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-17 View Gene Set 0.0001798 3203 0.002145 194 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-17 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-518b View Gene Set 0.0001844 1138 0.002178 195 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-518b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-888 View Gene Set 0.0001843 1983 0.002178 195 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-888 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-340 View Gene Set 0.0001877 2858 0.002195 197 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-340 from miRNAtargetUnion www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-26a View Gene Set 0.0001878 1269 0.002195 197 microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-26a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-641 View Gene Set 0.0001894 2967 0.002203 199 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-641 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-124 View Gene Set 0.000194 1943 0.002245 200 microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-124 from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: hprdBatch.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Androgen Receptor Signaling Pathway View Gene Set 1.43e-11 437 2.859e-10 1 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 4.834e-10 159 4.834e-09 2 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null TGF-beta Receptor Signaling Pathway View Gene Set 7.536e-10 792 5.024e-09 3 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null T Cell Receptor Signaling Pathway View Gene Set 5.179e-08 291 2.59e-07 4 From NetPath for T Cell Receptor Signaling Pathway www.netpath.org...
Null TNF-alpha Signaling Pathway View Gene Set 3.61e-07 728 1.444e-06 5 From NetPath for TNF-alpha Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 0.000359 154 0.001197 6 From NetPath for IL-1 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF-beta Receptor Signaling Pathway View Gene Set 1.137e-07 739 2.159e-06 1 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 0.002941 98 0.02794 2 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null B Cell Receptor Signaling Pathway View Gene Set 0.006462 182 0.0307 3 From NetPath for B Cell Receptor Signaling Pathway www.netpath.org...
Null TNF-alpha Signaling Pathway View Gene Set 0.00535 162 0.0307 3 From NetPath for TNF-alpha Signaling Pathway www.netpath.org...
Null IL-6 Signaling Pathway View Gene Set 0.008214 25 0.03122 5 From NetPath for IL-6 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdBatch.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF-beta Receptor Signaling Pathway View Gene Set 1.572e-11 1296 3.144e-10 1 From NetPath for TGF-beta Receptor Signaling Pathway www.netpath.org...
Null EGFR1 Signaling Pathway View Gene Set 9.82e-11 253 9.82e-10 2 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null Androgen Receptor Signaling Pathway View Gene Set 1.518e-10 586 1.012e-09 3 From NetPath for Androgen Receptor Signaling Pathway www.netpath.org...
Null T Cell Receptor Signaling Pathway View Gene Set 2.233e-08 349 1.117e-07 4 From NetPath for T Cell Receptor Signaling Pathway www.netpath.org...
Null TNF-alpha Signaling Pathway View Gene Set 1.07e-07 863 4.282e-07 5 From NetPath for TNF-alpha Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 0.001751 233 0.005836 6 From NetPath for IL-1 Signaling Pathway www.netpath.org...
Null B Cell Receptor Signaling Pathway View Gene Set 0.009857 418 0.02816 7 From NetPath for B Cell Receptor Signaling Pathway www.netpath.org...
Null IL-2 Signaling Pathway View Gene Set 0.0148 685 0.03543 8 From NetPath for IL-2 Signaling Pathway www.netpath.org...
Null IL-5 Signaling Pathway View Gene Set 0.01594 139 0.03543 8 From NetPath for IL-5 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TCR View Gene Set 1.62e-13 448 3.888e-12 1 From NetPath for TCR www.netpath.org...
Null EGFR1 View Gene Set 1.547e-08 105 1.857e-07 2 From NetPath for EGFR1 www.netpath.org...
Null IL1 View Gene Set 3.056e-05 85 0.0002445 3 From NetPath for IL1 www.netpath.org...
Null TGF_beta_Receptor View Gene Set 0.002801 212 0.0168 4 From NetPath for TGF_beta_Receptor www.netpath.org...

Gene Set Collection: hprdManual.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TGF_beta_Receptor View Gene Set 0.0003145 399 0.005976 1 From NetPath for TGF_beta_Receptor www.netpath.org...

Gene Set Collection: hprdManual.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TCR View Gene Set 4.042e-13 605 9.701e-12 1 From NetPath for TCR www.netpath.org...
Null EGFR1 View Gene Set 1.087e-08 153 1.304e-07 2 From NetPath for EGFR1 www.netpath.org...
Null TGF_beta_Receptor View Gene Set 1.993e-05 594 0.0001594 3 From NetPath for TGF_beta_Receptor www.netpath.org...
Null IL1 View Gene Set 5.116e-05 120 0.0003069 4 From NetPath for IL1 www.netpath.org...
Null IL5 View Gene Set 0.007038 144 0.03378 5 From NetPath for IL5 www.netpath.org...