Results

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Go to: Gene Set Collection: KEGG
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Go to: Gene Set Collection: miranda.targets
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Go to: Gene Set Collection: hprdManual.DIFFERENT
Go to: Gene Set Collection: tfbsK3Z3

AFA results for: tVPAda4PC3

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 03040 View Gene Set 6.036e-10 128 1.292e-07 1 Spliceosome www.genome.jp/d...
KEGG 04110 View Gene Set 3.888e-08 128 4.16e-06 2 Cell cycle www.genome.jp/d...
KEGG 00240 View Gene Set 1.059e-07 99 7.551e-06 3 Pyrimidine metabolism www.genome.jp/d...
KEGG 03030 View Gene Set 2.437e-06 36 0.0001304 4 DNA replication www.genome.jp/d...
KEGG 01100 View Gene Set 3.218e-06 1120 0.0001377 5 Metabolic pathways www.genome.jp/d...
KEGG 03410 View Gene Set 7.451e-06 34 0.0002658 6 Base excision repair www.genome.jp/d...
KEGG 00970 View Gene Set 2.065e-05 41 0.0006312 7 Aminoacyl-tRNA biosynthesis www.genome.jp/d...
KEGG 03420 View Gene Set 2.905e-05 44 0.0007772 8 Nucleotide excision repair www.genome.jp/d...
KEGG 00230 View Gene Set 5.138e-05 161 0.001222 9 Purine metabolism www.genome.jp/d...
KEGG 04120 View Gene Set 5.811e-05 139 0.001244 10 Ubiquitin mediated proteolysis www.genome.jp/d...
KEGG 04141 View Gene Set 0.0001044 167 0.002032 11 Protein processing in endoplasmic reticulum www.genome.jp/d...
KEGG 03020 View Gene Set 0.0005952 29 0.01062 12 RNA polymerase www.genome.jp/d...
KEGG 04621 View Gene Set 0.0007426 62 0.01222 13 NOD-like receptor signaling pathway www.genome.jp/d...
KEGG 00670 View Gene Set 0.001309 17 0.01868 14 One carbon pool by folate www.genome.jp/d...
KEGG 03018 View Gene Set 0.00123 59 0.01868 14 RNA degradation www.genome.jp/d...
KEGG 04142 View Gene Set 0.001638 121 0.02191 16 Lysosome www.genome.jp/d...
KEGG 04145 View Gene Set 0.001772 158 0.0223 17 Phagosome www.genome.jp/d...
KEGG 00520 View Gene Set 0.002922 45 0.03292 18 Amino sugar and nucleotide sugar metabolism www.genome.jp/d...
KEGG 05131 View Gene Set 0.00284 64 0.03292 18 Shigellosis www.genome.jp/d...
KEGG 00290 View Gene Set 0.003568 11 0.03818 20 Valine leucine and isoleucine biosynthesis www.genome.jp/d...
KEGG 05130 View Gene Set 0.003997 59 0.04074 21 Pathogenic Escherichia coli infection www.genome.jp/d...
KEGG 03430 View Gene Set 0.004378 23 0.04259 22 Mismatch repair www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0044424 View Gene Set 3.675e-54 10976 4.909e-50 1 intracellular part amigo.geneontol...
GO GO:0005622 View Gene Set 2.379e-52 11329 1.589e-48 2 intracellular amigo.geneontol...
GO GO:0043227 View Gene Set 2.318e-46 8383 8.677e-43 3 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 2.598e-46 8376 8.677e-43 3 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0043229 View Gene Set 1.13e-45 9346 3.02e-42 5 intracellular organelle amigo.geneontol...
GO GO:0043226 View Gene Set 2.648e-45 9360 5.896e-42 6 organelle amigo.geneontol...
GO GO:0044446 View Gene Set 4.233e-39 5019 8.079e-36 7 intracellular organelle part amigo.geneontol...
GO GO:0044422 View Gene Set 8.511e-38 5089 1.421e-34 8 organelle part amigo.geneontol...
GO GO:0031974 View Gene Set 1.093e-37 1917 1.622e-34 9 membrane-enclosed lumen amigo.geneontol...
GO GO:0070013 View Gene Set 1.697e-37 1845 2.267e-34 10 intracellular organelle lumen amigo.geneontol...
GO GO:0043233 View Gene Set 2.355e-36 1881 2.86e-33 11 organelle lumen amigo.geneontol...
GO GO:0005737 View Gene Set 5.273e-35 7676 5.871e-32 12 cytoplasm amigo.geneontol...
GO GO:0044428 View Gene Set 2.531e-33 1938 2.601e-30 13 nuclear part amigo.geneontol...
GO GO:0005739 View Gene Set 6.023e-28 1274 5.747e-25 14 mitochondrion amigo.geneontol...
GO GO:0031981 View Gene Set 4.897e-27 1518 4.362e-24 15 nuclear lumen amigo.geneontol...
GO GO:0044237 View Gene Set 1.099e-24 7431 9.178e-22 16 cellular metabolic process amigo.geneontol...
GO GO:0005634 View Gene Set 1.6e-23 5198 1.258e-20 17 nucleus amigo.geneontol...
GO GO:0044260 View Gene Set 4.023e-23 5699 2.986e-20 18 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0044444 View Gene Set 1.175e-22 5184 8.264e-20 19 cytoplasmic part amigo.geneontol...
GO GO:0043228 View Gene Set 2.633e-22 2690 1.675e-19 20 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 2.633e-22 2690 1.675e-19 20 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0006396 View Gene Set 1.302e-21 578 7.906e-19 22 RNA processing amigo.geneontol...
GO GO:0003723 View Gene Set 4.349e-20 732 2.526e-17 23 RNA binding amigo.geneontol...
GO GO:0005515 View Gene Set 6.628e-20 8146 3.689e-17 24 protein binding amigo.geneontol...
GO GO:0008152 View Gene Set 1.207e-19 8439 6.448e-17 25 metabolic process amigo.geneontol...
GO GO:0043170 View Gene Set 4.784e-19 6274 2.458e-16 26 macromolecule metabolic process amigo.geneontol...
GO GO:0044238 View Gene Set 6.744e-19 7629 3.337e-16 27 primary metabolic process amigo.geneontol...
GO GO:0032991 View Gene Set 1.083e-18 3237 5.167e-16 28 macromolecular complex amigo.geneontol...
GO GO:0030529 View Gene Set 1.135e-17 504 5.23e-15 29 ribonucleoprotein complex amigo.geneontol...
GO GO:0044429 View Gene Set 5.502e-17 619 2.45e-14 30 mitochondrial part amigo.geneontol...
GO GO:0090304 View Gene Set 1.819e-16 3724 7.839e-14 31 nucleic acid metabolic process amigo.geneontol...
GO GO:0005654 View Gene Set 9.114e-16 939 3.805e-13 32 nucleoplasm amigo.geneontol...
GO GO:0005730 View Gene Set 1.197e-15 734 4.848e-13 33 nucleolus amigo.geneontol...
GO GO:0006259 View Gene Set 1.668e-15 592 6.553e-13 34 DNA metabolic process amigo.geneontol...
GO GO:0034660 View Gene Set 6.062e-15 236 2.314e-12 35 ncRNA metabolic process amigo.geneontol...
GO GO:0005488 View Gene Set 7.64e-15 12334 2.835e-12 36 binding amigo.geneontol...
GO GO:0008380 View Gene Set 2.122e-14 300 7.661e-12 37 RNA splicing amigo.geneontol...
GO GO:0006139 View Gene Set 3.059e-14 4294 1.075e-11 38 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0034641 View Gene Set 6.794e-14 4584 2.327e-11 39 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0005759 View Gene Set 7.193e-14 223 2.344e-11 40 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 7.193e-14 223 2.344e-11 40 mitochondrial lumen amigo.geneontol...
GO GO:0010467 View Gene Set 1.042e-13 3806 3.316e-11 42 gene expression amigo.geneontol...
GO GO:0006807 View Gene Set 1.735e-13 4698 5.391e-11 43 nitrogen compound metabolic process amigo.geneontol...
GO GO:0006974 View Gene Set 2.628e-13 412 7.979e-11 44 response to DNA damage stimulus amigo.geneontol...
GO GO:0031975 View Gene Set 3.378e-13 685 1.003e-10 45 envelope amigo.geneontol...
GO GO:0031967 View Gene Set 5.845e-13 672 1.698e-10 46 organelle envelope amigo.geneontol...
GO GO:0034470 View Gene Set 8.42e-13 193 2.393e-10 47 ncRNA processing amigo.geneontol...
GO GO:0022613 View Gene Set 1.804e-12 194 5.02e-10 48 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0007049 View Gene Set 1.918e-12 1006 5.229e-10 49 cell cycle amigo.geneontol...
GO GO:0009987 View Gene Set 3.942e-12 11620 1.053e-09 50 cellular process amigo.geneontol...
GO GO:0009057 View Gene Set 9.637e-12 570 2.524e-09 51 macromolecule catabolic process amigo.geneontol...
GO GO:0006281 View Gene Set 1.615e-11 309 4.149e-09 52 DNA repair amigo.geneontol...
GO GO:0044267 View Gene Set 1.667e-11 2465 4.201e-09 53 cellular protein metabolic process amigo.geneontol...
GO GO:0033554 View Gene Set 2.802e-11 698 6.932e-09 54 cellular response to stress amigo.geneontol...
GO GO:0003824 View Gene Set 3.042e-11 5198 7.39e-09 55 catalytic activity amigo.geneontol...
GO GO:0044265 View Gene Set 3.472e-11 479 8.282e-09 56 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0016071 View Gene Set 4.183e-11 381 9.76e-09 57 mRNA metabolic process amigo.geneontol...
GO GO:0003676 View Gene Set 4.237e-11 2979 9.76e-09 57 nucleic acid binding amigo.geneontol...
GO GO:0006260 View Gene Set 5.122e-10 239 1.16e-07 59 DNA replication amigo.geneontol...
GO GO:0044464 View Gene Set 5.563e-10 15066 1.239e-07 60 cell part amigo.geneontol...
GO GO:0005623 View Gene Set 6.173e-10 15067 1.352e-07 61 cell amigo.geneontol...
GO GO:0006412 View Gene Set 9.057e-10 412 1.952e-07 62 translation amigo.geneontol...
GO GO:0006397 View Gene Set 9.779e-10 317 2.057e-07 63 mRNA processing amigo.geneontol...
GO GO:0043234 View Gene Set 9.856e-10 2680 2.057e-07 63 protein complex amigo.geneontol...
GO GO:0000375 View Gene Set 1.655e-09 106 3.401e-07 65 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0016070 View Gene Set 2.785e-09 2596 5.637e-07 66 RNA metabolic process amigo.geneontol...
GO GO:0042254 View Gene Set 3.412e-09 130 6.803e-07 67 ribosome biogenesis amigo.geneontol...
GO GO:0006996 View Gene Set 6.3e-09 1501 1.238e-06 68 organelle organization amigo.geneontol...
GO GO:0005740 View Gene Set 6.531e-09 444 1.264e-06 69 mitochondrial envelope amigo.geneontol...
GO GO:0006399 View Gene Set 1.076e-08 118 2.053e-06 70 tRNA metabolic process amigo.geneontol...
GO GO:0030163 View Gene Set 1.271e-08 398 2.391e-06 71 protein catabolic process amigo.geneontol...
GO GO:0019941 View Gene Set 1.339e-08 302 2.45e-06 72 modification-dependent protein catabolic process amigo.geneontol...
GO GO:0043632 View Gene Set 1.339e-08 302 2.45e-06 72 modification-dependent macromolecule catabolic process amigo.geneontol...
GO GO:0051603 View Gene Set 1.379e-08 346 2.49e-06 74 proteolysis involved in cellular protein catabolic process amigo.geneontol...
GO GO:0051726 View Gene Set 1.459e-08 451 2.599e-06 75 regulation of cell cycle amigo.geneontol...
GO GO:0000166 View Gene Set 1.576e-08 2257 2.771e-06 76 nucleotide binding amigo.geneontol...
GO GO:0005681 View Gene Set 1.728e-08 135 2.998e-06 77 spliceosomal complex amigo.geneontol...
GO GO:0000377 View Gene Set 2.006e-08 97 3.392e-06 78 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 2.006e-08 97 3.392e-06 78 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0044257 View Gene Set 2.89e-08 349 4.826e-06 80 cellular protein catabolic process amigo.geneontol...
GO GO:0044085 View Gene Set 3.162e-08 1167 5.216e-06 81 cellular component biogenesis amigo.geneontol...
GO GO:0006364 View Gene Set 3.235e-08 97 5.265e-06 82 rRNA processing amigo.geneontol...
GO GO:0005694 View Gene Set 3.271e-08 507 5.265e-06 82 chromosome amigo.geneontol...
GO GO:0016043 View Gene Set 3.335e-08 2937 5.305e-06 84 cellular component organization amigo.geneontol...
GO GO:0006511 View Gene Set 3.391e-08 296 5.329e-06 85 ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0016072 View Gene Set 3.478e-08 101 5.403e-06 86 rRNA metabolic process amigo.geneontol...
GO GO:0044427 View Gene Set 5.589e-08 420 8.582e-06 87 chromosomal part amigo.geneontol...
GO GO:0000278 View Gene Set 5.773e-08 489 8.764e-06 88 mitotic cell cycle amigo.geneontol...
GO GO:0019538 View Gene Set 9.922e-08 2935 1.489e-05 89 protein metabolic process amigo.geneontol...
GO GO:0044249 View Gene Set 1.26e-07 4326 1.87e-05 90 cellular biosynthetic process amigo.geneontol...
GO GO:0034399 View Gene Set 1.681e-07 71 2.469e-05 91 nuclear periphery amigo.geneontol...
GO GO:0009058 View Gene Set 1.759e-07 4436 2.555e-05 92 biosynthetic process amigo.geneontol...
GO GO:0022402 View Gene Set 1.795e-07 676 2.578e-05 93 cell cycle process amigo.geneontol...
GO GO:0016779 View Gene Set 2.314e-07 120 3.288e-05 94 nucleotidyltransferase activity amigo.geneontol...
GO GO:0031966 View Gene Set 2.59e-07 420 3.642e-05 95 mitochondrial membrane amigo.geneontol...
GO GO:0009059 View Gene Set 2.825e-07 3597 3.931e-05 96 macromolecule biosynthetic process amigo.geneontol...
GO GO:0034645 View Gene Set 3.048e-07 3529 4.198e-05 97 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0044451 View Gene Set 3.846e-07 600 5.244e-05 98 nucleoplasm part amigo.geneontol...
GO GO:0044248 View Gene Set 5.356e-07 1005 7.227e-05 99 cellular catabolic process amigo.geneontol...
GO GO:0015630 View Gene Set 7.855e-07 587 0.0001049 100 microtubule cytoskeleton amigo.geneontol...
GO GO:0005829 View Gene Set 1.046e-06 1323 0.0001384 101 cytosol amigo.geneontol...
GO GO:0008104 View Gene Set 1.057e-06 1048 0.0001384 102 protein localization amigo.geneontol...
GO GO:0009056 View Gene Set 1.202e-06 1255 0.0001558 103 catabolic process amigo.geneontol...
GO GO:0045184 View Gene Set 1.759e-06 904 0.0002259 104 establishment of protein localization amigo.geneontol...
GO GO:0034621 View Gene Set 2.133e-06 458 0.0002714 105 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0016874 View Gene Set 2.321e-06 436 0.0002926 106 ligase activity amigo.geneontol...
GO GO:0006261 View Gene Set 2.528e-06 74 0.0003156 107 DNA-dependent DNA replication amigo.geneontol...
GO GO:0043933 View Gene Set 2.682e-06 836 0.0003318 108 macromolecular complex subunit organization amigo.geneontol...
GO GO:0007005 View Gene Set 2.822e-06 139 0.0003459 109 mitochondrion organization amigo.geneontol...
GO GO:0016363 View Gene Set 3.373e-06 64 0.0004096 110 nuclear matrix amigo.geneontol...
GO GO:0033036 View Gene Set 3.433e-06 1256 0.0004132 111 macromolecule localization amigo.geneontol...
GO GO:0015031 View Gene Set 4.346e-06 888 0.0005184 112 protein transport amigo.geneontol...
GO GO:0065003 View Gene Set 4.615e-06 763 0.0005457 113 macromolecular complex assembly amigo.geneontol...
GO GO:0016604 View Gene Set 4.666e-06 198 0.0005468 114 nuclear body amigo.geneontol...
GO GO:0022403 View Gene Set 5.389e-06 522 0.0006261 115 cell cycle phase amigo.geneontol...
GO GO:0001836 View Gene Set 6.065e-06 26 0.0006985 116 release of cytochrome c from mitochondria amigo.geneontol...
GO GO:0022618 View Gene Set 6.156e-06 76 0.000703 117 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0005815 View Gene Set 7.473e-06 277 0.0008461 118 microtubule organizing center amigo.geneontol...
GO GO:0004812 View Gene Set 7.767e-06 46 0.0008576 119 aminoacyl-tRNA ligase activity amigo.geneontol...
GO GO:0016875 View Gene Set 7.767e-06 46 0.0008576 119 ligase activity forming carbon-oxygen bonds amigo.geneontol...
GO GO:0016876 View Gene Set 7.767e-06 46 0.0008576 119 ligase activity forming aminoacyl-tRNA and related compounds amigo.geneontol...
GO GO:0051082 View Gene Set 8.892e-06 113 0.0009737 122 unfolded protein binding amigo.geneontol...
GO GO:0000280 View Gene Set 9.075e-06 276 0.0009777 123 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 9.075e-06 276 0.0009777 123 mitosis amigo.geneontol...
GO GO:0006418 View Gene Set 9.558e-06 45 0.001005 125 tRNA aminoacylation for protein translation amigo.geneontol...
GO GO:0043038 View Gene Set 9.558e-06 45 0.001005 125 amino acid activation amigo.geneontol...
GO GO:0043039 View Gene Set 9.558e-06 45 0.001005 125 tRNA aminoacylation amigo.geneontol...
GO GO:0005635 View Gene Set 1.043e-05 234 0.001089 128 nuclear envelope amigo.geneontol...
GO GO:0012501 View Gene Set 1.056e-05 1141 0.001094 129 programmed cell death amigo.geneontol...
GO GO:0006915 View Gene Set 1.123e-05 1133 0.001154 130 apoptosis amigo.geneontol...
GO GO:0034622 View Gene Set 1.372e-05 393 0.001399 131 cellular macromolecular complex assembly amigo.geneontol...
GO GO:0046961 View Gene Set 1.405e-05 19 0.001422 132 proton-transporting ATPase activity rotational mechanism amigo.geneontol...
GO GO:0008219 View Gene Set 1.562e-05 1250 0.001569 133 cell death amigo.geneontol...
GO GO:0016265 View Gene Set 1.69e-05 1253 0.001685 134 death amigo.geneontol...
GO GO:0006457 View Gene Set 1.852e-05 172 0.001817 135 protein folding amigo.geneontol...
GO GO:0000313 View Gene Set 1.863e-05 49 0.001817 135 organellar ribosome amigo.geneontol...
GO GO:0005761 View Gene Set 1.863e-05 49 0.001817 135 mitochondrial ribosome amigo.geneontol...
GO GO:0051716 View Gene Set 2.01e-05 1102 0.001946 138 cellular response to stimulus amigo.geneontol...
GO GO:0051301 View Gene Set 2.12e-05 358 0.002038 139 cell division amigo.geneontol...
GO GO:0000775 View Gene Set 2.154e-05 146 0.002055 140 chromosome centromeric region amigo.geneontol...
GO GO:0019866 View Gene Set 2.186e-05 334 0.002071 141 organelle inner membrane amigo.geneontol...
GO GO:0051276 View Gene Set 2.457e-05 548 0.002312 142 chromosome organization amigo.geneontol...
GO GO:0048285 View Gene Set 2.558e-05 286 0.00239 143 organelle fission amigo.geneontol...
GO GO:0010608 View Gene Set 2.706e-05 247 0.002511 144 posttranscriptional regulation of gene expression amigo.geneontol...
GO GO:0010498 View Gene Set 2.885e-05 166 0.002659 145 proteasomal protein catabolic process amigo.geneontol...
GO GO:0032553 View Gene Set 3.014e-05 1851 0.002739 146 ribonucleotide binding amigo.geneontol...
GO GO:0032555 View Gene Set 3.014e-05 1851 0.002739 146 purine ribonucleotide binding amigo.geneontol...
GO GO:0016866 View Gene Set 3.206e-05 27 0.002894 148 intramolecular transferase activity amigo.geneontol...
GO GO:0006403 View Gene Set 3.389e-05 104 0.003039 149 RNA localization amigo.geneontol...
GO GO:0000087 View Gene Set 3.694e-05 286 0.00329 150 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0016817 View Gene Set 4.009e-05 769 0.003547 151 hydrolase activity acting on acid anhydrides amigo.geneontol...
GO GO:0005840 View Gene Set 4.113e-05 198 0.003615 152 ribosome amigo.geneontol...
GO GO:0008033 View Gene Set 4.153e-05 78 0.003617 153 tRNA processing amigo.geneontol...
GO GO:0000785 View Gene Set 4.17e-05 213 0.003617 153 chromatin amigo.geneontol...
GO GO:0005524 View Gene Set 4.257e-05 1480 0.003669 155 ATP binding amigo.geneontol...
GO GO:0016818 View Gene Set 4.337e-05 765 0.003714 156 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides amigo.geneontol...
GO GO:0051186 View Gene Set 4.867e-05 215 0.004142 157 cofactor metabolic process amigo.geneontol...
GO GO:0050657 View Gene Set 5.15e-05 102 0.004274 158 nucleic acid transport amigo.geneontol...
GO GO:0050658 View Gene Set 5.15e-05 102 0.004274 158 RNA transport amigo.geneontol...
GO GO:0051236 View Gene Set 5.15e-05 102 0.004274 158 establishment of RNA localization amigo.geneontol...
GO GO:0031968 View Gene Set 5.123e-05 110 0.004274 158 organelle outer membrane amigo.geneontol...
GO GO:0009295 View Gene Set 5.665e-05 31 0.004644 162 nucleoid amigo.geneontol...
GO GO:0042645 View Gene Set 5.665e-05 31 0.004644 162 mitochondrial nucleoid amigo.geneontol...
GO GO:0005856 View Gene Set 5.704e-05 1410 0.004646 164 cytoskeleton amigo.geneontol...
GO GO:0005743 View Gene Set 5.799e-05 305 0.004667 165 mitochondrial inner membrane amigo.geneontol...
GO GO:0044430 View Gene Set 5.796e-05 979 0.004667 165 cytoskeletal part amigo.geneontol...
GO GO:0043161 View Gene Set 5.879e-05 162 0.004704 167 proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0031090 View Gene Set 5.949e-05 1905 0.004731 168 organelle membrane amigo.geneontol...
GO GO:0016462 View Gene Set 6.257e-05 762 0.004946 169 pyrophosphatase activity amigo.geneontol...
GO GO:0006417 View Gene Set 6.385e-05 151 0.00499 170 regulation of translation amigo.geneontol...
GO GO:0008135 View Gene Set 6.386e-05 86 0.00499 170 translation factor activity nucleic acid binding amigo.geneontol...
GO GO:0000315 View Gene Set 6.63e-05 18 0.00512 172 organellar large ribosomal subunit amigo.geneontol...
GO GO:0005762 View Gene Set 6.63e-05 18 0.00512 172 mitochondrial large ribosomal subunit amigo.geneontol...
GO GO:0022607 View Gene Set 6.936e-05 1043 0.005315 174 cellular component assembly amigo.geneontol...
GO GO:0017076 View Gene Set 6.962e-05 1934 0.005315 174 purine nucleotide binding amigo.geneontol...
GO GO:0032559 View Gene Set 7.054e-05 1503 0.005355 176 adenyl ribonucleotide binding amigo.geneontol...
GO GO:0009219 View Gene Set 7.11e-05 12 0.005367 177 pyrimidine deoxyribonucleotide metabolic process amigo.geneontol...
GO GO:0017111 View Gene Set 7.257e-05 733 0.005447 178 nucleoside-triphosphatase activity amigo.geneontol...
GO GO:0000279 View Gene Set 7.348e-05 406 0.005484 179 M phase amigo.geneontol...
GO GO:0044419 View Gene Set 8.401e-05 343 0.006235 180 interspecies interaction between organisms amigo.geneontol...
GO GO:0001882 View Gene Set 9.254e-05 1630 0.00683 181 nucleoside binding amigo.geneontol...
GO GO:0046907 View Gene Set 9.67e-05 753 0.007098 182 intracellular transport amigo.geneontol...
GO GO:0032446 View Gene Set 0.0001009 310 0.007368 183 protein modification by small protein conjugation amigo.geneontol...
GO GO:0016567 View Gene Set 0.0001055 286 0.007657 184 protein ubiquitination amigo.geneontol...
GO GO:0019867 View Gene Set 0.0001076 115 0.007772 185 outer membrane amigo.geneontol...
GO GO:0006289 View Gene Set 0.0001214 57 0.008718 186 nucleotide-excision repair amigo.geneontol...
GO GO:0051028 View Gene Set 0.0001249 90 0.008926 187 mRNA transport amigo.geneontol...
GO GO:0006310 View Gene Set 0.0001315 130 0.009344 188 DNA recombination amigo.geneontol...
GO GO:0070647 View Gene Set 0.0001332 356 0.009418 189 protein modification by small protein conjugation or removal amigo.geneontol...
GO GO:0009451 View Gene Set 0.0001358 51 0.009552 190 RNA modification amigo.geneontol...
GO GO:0033178 View Gene Set 0.0001467 19 0.01026 191 proton-transporting two-sector ATPase complex catalytic domain amigo.geneontol...
GO GO:0043067 View Gene Set 0.0001511 897 0.01051 192 regulation of programmed cell death amigo.geneontol...
GO GO:0001522 View Gene Set 0.0001528 14 0.01058 193 pseudouridine synthesis amigo.geneontol...
GO GO:0010941 View Gene Set 0.0001625 904 0.01119 194 regulation of cell death amigo.geneontol...
GO GO:0003743 View Gene Set 0.0001645 52 0.01127 195 translation initiation factor activity amigo.geneontol...
GO GO:0001883 View Gene Set 0.0001703 1620 0.01161 196 purine nucleoside binding amigo.geneontol...
GO GO:0010564 View Gene Set 0.0001744 161 0.01183 197 regulation of cell cycle process amigo.geneontol...
GO GO:0003899 View Gene Set 0.0001769 42 0.01188 198 DNA-directed RNA polymerase activity amigo.geneontol...
GO GO:0034062 View Gene Set 0.0001769 42 0.01188 198 RNA polymerase activity amigo.geneontol...
GO GO:0042770 View Gene Set 0.0001819 103 0.01215 200 DNA damage response signal transduction amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUYTTEN_EZH2_TARGETS_UP View Gene Set 1.009e-47 944 2.414e-44 1 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 4.175e-47 577 4.994e-44 2 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 8.236e-47 1353 6.566e-44 3 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 2.748e-46 920 1.643e-43 4 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 1.056e-44 744 5.052e-42 5 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 7.16e-44 1582 2.854e-41 6 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 1.553e-43 1253 5.308e-41 7 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 3.545e-41 832 1.06e-38 8 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 3.62e-39 537 9.622e-37 9 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 5.941e-35 657 1.421e-32 10 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 3.166e-33 859 6.885e-31 11 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 5.249e-32 276 1.046e-29 12 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 7.383e-32 1180 1.358e-29 13 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 3.165e-28 757 5.408e-26 14 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 3.615e-26 639 5.764e-24 15 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 9.531e-26 915 1.425e-23 16 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 1.768e-25 681 2.487e-23 17 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 2.128e-25 485 2.827e-23 18 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 3.06e-25 589 3.852e-23 19 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 1.839e-24 758 2.199e-22 20 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 1.719e-23 806 1.958e-21 21 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 6.645e-23 946 7.225e-21 22 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 4.845e-22 825 5.038e-20 23 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 5.154e-22 331 5.137e-20 24 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 1.374e-21 294 1.314e-19 25 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 2.16e-20 1209 1.987e-18 26 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 2.354e-20 415 2.086e-18 27 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 2.582e-20 402 2.206e-18 28 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 4.485e-20 599 3.7e-18 29 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 1.231e-19 532 9.816e-18 30 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP View Gene Set 5.462e-19 869 4.215e-17 31 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 1.173e-18 351 8.768e-17 32 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 1.23e-18 427 8.916e-17 33 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad KIM_WT1_TARGETS_DN View Gene Set 1.717e-18 431 1.208e-16 34 Genes down-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 2.089e-18 475 1.403e-16 35 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 2.112e-18 1045 1.403e-16 35 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad WU_CELL_MIGRATION View Gene Set 2.685e-18 182 1.736e-16 37 Genes associated with migration rate of 40 human bladder cancer cells. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 1.694e-17 1641 1.066e-15 38 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 3.193e-17 739 1.958e-15 39 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 3.584e-17 265 2.143e-15 40 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 4.266e-17 435 2.489e-15 41 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 5.178e-17 420 2.949e-15 42 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN View Gene Set 5.597e-17 437 3.114e-15 43 Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 8.453e-17 410 4.595e-15 44 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 1.279e-16 187 6.801e-15 45 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 5.036e-16 332 2.619e-14 46 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 5.605e-16 184 2.853e-14 47 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 1.072e-15 408 5.341e-14 48 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1 View Gene Set 1.111e-15 491 5.426e-14 49 The 'group 1 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 1.551e-15 290 7.418e-14 50 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN View Gene Set 1.59e-15 444 7.456e-14 51 Genes down-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP View Gene Set 1.659e-15 783 7.632e-14 52 Genes up-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 1.802e-15 711 8.134e-14 53 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 2.82e-15 243 1.249e-13 54 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 6.155e-15 508 2.677e-13 55 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 6.478e-15 453 2.767e-13 56 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad GRUETZMANN_PANCREATIC_CANCER_UP View Gene Set 6.979e-15 345 2.929e-13 57 Genes up-regulated in pancreatic ductal adenocarcinoma (PDAC) identified in a meta analysis across four independent studies. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 7.747e-15 433 3.195e-13 58 Mitochondrial genes www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 2.262e-14 704 9.173e-13 59 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN View Gene Set 2.57e-14 418 1.025e-12 60 Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [Gene ID=2071] after UVC irradiation. www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_UP View Gene Set 3.221e-14 328 1.263e-12 61 Genes up-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL). www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 3.321e-14 517 1.281e-12 62 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 5.388e-14 666 2.046e-12 63 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 8.661e-14 164 3.237e-12 64 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 9.992e-14 154 3.677e-12 65 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad LAIHO_COLORECTAL_CANCER_SERRATED_UP View Gene Set 1.122e-13 108 4.067e-12 66 Genes up-regulated in serrated vs conventional colorectal carcinoma (CRC) samples. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 1.261e-13 509 4.5e-12 67 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 1.285e-13 303 4.521e-12 68 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 1.341e-13 630 4.65e-12 69 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES View Gene Set 1.406e-13 384 4.803e-12 70 Housekeeping genes identified as expressed across 19 normal tissues. www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE View Gene Set 1.646e-13 315 5.545e-12 71 Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 1.752e-13 406 5.821e-12 72 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 1.852e-13 213 6.068e-12 73 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad KIM_WT1_TARGETS_12HR_DN View Gene Set 2.637e-13 200 8.524e-12 74 Genes down-regulated in UB27 cells (osteosarcoma) at 12 hr after inducing the expression of a mutated form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_DN View Gene Set 2.81e-13 161 8.963e-12 75 Genes down-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 2.905e-13 768 9.143e-12 76 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 2.994e-13 279 9.301e-12 77 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 6.478e-13 571 1.987e-11 78 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 6.622e-13 1375 2.005e-11 79 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad HAN_SATB1_TARGETS_UP View Gene Set 8.221e-13 303 2.458e-11 80 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad TOOKER_GEMCITABINE_RESISTANCE_DN View Gene Set 9.732e-13 122 2.839e-11 81 Down-regulated genes in Calu3 cells (non-small cell lung cancer NSCLC) resistant to gemcitabine [PubChem=3461] compared to the parental line sensitive to the drug. www.broad.mit.e...
Broad TOOKER_RESPONSE_TO_BEXAROTENE_UP View Gene Set 9.732e-13 122 2.839e-11 81 Up-regulated genes in Calu3 cells (non-small lung cancer cells NSCLC) resitant to gemcitabine [PubChem=3461] in response to bexarotene [PubChem=82146]. www.broad.mit.e...
Broad BILD_HRAS_ONCOGENIC_SIGNATURE View Gene Set 1.324e-12 248 3.815e-11 83 Genes selected in supervised analyses to discriminate cells expressing activated HRAS [Gene ID=3265] oncogene from control cells expressing GFP. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP View Gene Set 2.625e-12 452 7.476e-11 84 Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad WANG_SMARCE1_TARGETS_DN View Gene Set 2.74e-12 329 7.71e-11 85 Genes down-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [Gene ID=6605] off a retroviral vector. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 5.796e-12 127 1.612e-10 86 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP View Gene Set 7.606e-12 388 2.091e-10 87 Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 8.714e-12 301 2.369e-10 88 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_UP View Gene Set 1.217e-11 208 3.271e-10 89 Genes up-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK). www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 1.541e-11 359 4.096e-10 90 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 1.59e-11 92 4.18e-10 91 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_DN View Gene Set 1.669e-11 217 4.339e-10 92 Genes down-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 2.199e-11 140 5.655e-10 93 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 3.013e-11 289 7.586e-10 94 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_UP View Gene Set 3.007e-11 240 7.586e-10 94 Selected genes up-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 3.2e-11 283 7.973e-10 96 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 3.704e-11 268 9.133e-10 97 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 4.14e-11 368 1.01e-09 98 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION View Gene Set 4.209e-11 154 1.017e-09 99 Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_UP View Gene Set 4.68e-11 99 1.12e-09 100 Genes up-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5 View Gene Set 4.817e-11 446 1.141e-09 101 The 'group 5 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 but not ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 4.914e-11 399 1.152e-09 102 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_UP View Gene Set 5.217e-11 471 1.212e-09 103 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 5.577e-11 436 1.283e-09 104 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 5.877e-11 68 1.339e-09 105 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_UP View Gene Set 6.262e-11 629 1.413e-09 106 Genes up-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 6.759e-11 367 1.497e-09 107 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 6.735e-11 241 1.497e-09 107 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad ENK_UV_RESPONSE_EPIDERMIS_DN View Gene Set 7.428e-11 504 1.615e-09 109 Genes down-regulated in epidermis after to UVB irradiation. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 7.412e-11 314 1.615e-09 109 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 7.591e-11 178 1.636e-09 111 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 7.931e-11 208 1.679e-09 112 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad HAN_SATB1_TARGETS_DN View Gene Set 7.926e-11 320 1.679e-09 112 Genes down-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 1.264e-10 205 2.653e-09 114 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP View Gene Set 1.396e-10 539 2.904e-09 115 Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 1.693e-10 80 3.492e-09 116 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 1.787e-10 353 3.653e-09 117 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 1.832e-10 96 3.714e-09 118 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad NAGASHIMA_NRG1_SIGNALING_UP View Gene Set 2.348e-10 171 4.719e-09 119 Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [Gene ID=3084]. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_60_MCF10A View Gene Set 3.015e-10 38 6.009e-09 120 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 3.124e-10 165 6.176e-09 121 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 3.447e-10 46 6.759e-09 122 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP View Gene Set 3.661e-10 716 7.12e-09 123 Genes up-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_11 View Gene Set 3.986e-10 93 7.689e-09 124 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11. www.broad.mit.e...
Broad KAN_RESPONSE_TO_ARSENIC_TRIOXIDE View Gene Set 4.77e-10 117 9.127e-09 125 Genes changed in U373-MG cells (malignant glioma) upon treatment with arsenic trioxide [PubChem=14888] a chemical that can cause autophagic cell death. www.broad.mit.e...
Broad SENESE_HDAC1_AND_HDAC2_TARGETS_UP View Gene Set 4.876e-10 224 9.256e-09 126 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of both HDAC1 and HDAC2 [Gene ID=3065 3066] by RNAi. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 5.24e-10 370 9.869e-09 127 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215 View Gene Set 5.761e-10 809 1.077e-08 128 Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h. www.broad.mit.e...
Broad STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN View Gene Set 6.644e-10 437 1.232e-08 129 Genes down-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 7.07e-10 469 1.301e-08 130 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 8.756e-10 329 1.599e-08 131 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP View Gene Set 8.96e-10 263 1.624e-08 132 Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad KAAB_HEART_ATRIUM_VS_VENTRICLE_DN View Gene Set 9.169e-10 257 1.649e-08 133 Genes up-regulated in the ventricles of healthy hearts compared to atria. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 1.181e-09 62 2.108e-08 134 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad WANG_LMO4_TARGETS_DN View Gene Set 1.216e-09 327 2.154e-08 135 Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP View Gene Set 1.315e-09 242 2.313e-08 136 Genes up-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis). www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_UP View Gene Set 1.703e-09 132 2.974e-08 137 The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 2.047e-09 317 3.547e-08 138 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP View Gene Set 2.136e-09 375 3.675e-08 139 Genes up-regulated in nasopharyngeal carcinoma (NPC) positive for LMP1 [Gene ID=9260] a latent gene of Epstein-Barr virus (EBV). www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS View Gene Set 2.752e-09 855 4.703e-08 140 Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi. www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP View Gene Set 2.773e-09 195 4.703e-08 141 Genes up-regulated in monocytes by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 3.24e-09 203 5.458e-08 142 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP View Gene Set 3.334e-09 192 5.578e-08 143 Genes enriched in embryonic neural and hematopoietic stem cells. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 3.643e-09 368 6.051e-08 144 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad HOLLMAN_APOPTOSIS_VIA_CD40_UP View Gene Set 4.36e-09 193 7.192e-08 145 Genes up-regulated in DLBCL (diffuse large B-cell lymphoma) cell lines sensitive to stimulation of CD40 [Gene ID=958] relative to the resistant ones. www.broad.mit.e...
Broad WINTER_HYPOXIA_METAGENE View Gene Set 6.131e-09 216 1.005e-07 146 Genes regulated by hypoxia based on literature searches. www.broad.mit.e...
Broad HINATA_NFKB_TARGETS_FIBROBLAST_UP View Gene Set 6.348e-09 66 1.033e-07 147 Genes up-regulated in primary fibroblast cells by expression of p50 (NFKB1) and p65 (RELA) [Gene ID=4790 5970] components of NFKB. www.broad.mit.e...
Broad GOZGIT_ESR1_TARGETS_DN View Gene Set 6.438e-09 710 1.04e-07 148 Genes down-regulated in TMX2-28 cells (breast cancer) which do not express ESR1 [Gene ID=2099]) compared to the parental MCF7 cells which do. www.broad.mit.e...
Broad MASSARWEH_TAMOXIFEN_RESISTANCE_UP View Gene Set 7.225e-09 531 1.16e-07 149 Genes up-regulated in breast cancer tumors (formed by MCF-7 xenografts) resistant to tamoxifen [PubChem=5376]. www.broad.mit.e...
Broad HINATA_NFKB_TARGETS_KERATINOCYTE_UP View Gene Set 7.708e-09 71 1.229e-07 150 Genes up-regulated in primary keratinocytes by expression of p50 (NFKB1) and p65 (RELA) [Gene ID=4790 5970] components of NFKB. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN View Gene Set 9.148e-09 123 1.449e-07 151 Genes highly expressed in hepatocellular carcinoma with poor survival. www.broad.mit.e...
Broad ALONSO_METASTASIS_UP View Gene Set 9.293e-09 152 1.462e-07 152 Up-regulated genes in melanoma tumous that developed metastatic disease compared to primary melanoma that did not. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_BASAL_VS_LULMINAL View Gene Set 9.497e-09 317 1.485e-07 153 Genes which best discriminated between two groups of breast cancer according to the status of ESR1 and AR [Gene ID=2099 367]: basal (ESR1- AR-) and luminal (ESR1+ AR+). www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN View Gene Set 1.135e-08 140 1.763e-07 154 Genes down-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 1.51e-08 212 2.33e-07 155 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN View Gene Set 2.008e-08 61 3.079e-07 156 Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad HUPER_BREAST_BASAL_VS_LUMINAL_DN View Gene Set 2.027e-08 59 3.088e-07 157 Genes down-regulated in basal mammary epithelial cells compared to the luminal ones. www.broad.mit.e...
Broad OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 2.102e-08 114 3.182e-07 158 Genes up-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL View Gene Set 2.209e-08 109 3.324e-07 159 Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 2.252e-08 436 3.367e-07 160 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP View Gene Set 2.467e-08 45 3.665e-07 161 Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone. www.broad.mit.e...
Broad BRUECKNER_TARGETS_OF_MIRLET7A3_DN View Gene Set 3.202e-08 77 4.727e-07 162 Genes down-regulated in A549 cells (lung cancer) expressing MIRLET7A3 [Gene ID=406883] microRNA off a plasmid vector. www.broad.mit.e...
Broad WANG_LMO4_TARGETS_UP View Gene Set 4.012e-08 341 5.887e-07 163 Genes up-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 4.08e-08 171 5.951e-07 164 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad KIM_WT1_TARGETS_UP View Gene Set 4.995e-08 207 7.242e-07 165 Genes up-regulated in UB27 cells (osteosarcoma) at any time point after inducing the expression of a mutant form of WT1 [Gene ID=7490]. www.broad.mit.e...
Broad RIGGINS_TAMOXIFEN_RESISTANCE_DN View Gene Set 5.631e-08 211 8.114e-07 166 Genes down-regulated SUM44/LCCTam cells (breast cancer) resistant to 4-hydroxytamoxifen [PubChem=63062] relative to the parental SUM44 cells sensitive to the drug. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_ESR1_DN View Gene Set 5.777e-08 217 8.249e-07 167 Down-regulated genes from the optimal set of 550 markers discriminating breast cancer samples by ESR1 [Gene ID=2099] expression: ER(+) vs ER(-) tumors. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14 View Gene Set 5.793e-08 131 8.249e-07 167 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN View Gene Set 5.891e-08 43 8.338e-07 169 Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757]. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_UP View Gene Set 6.55e-08 163 9.216e-07 170 Genes up-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP View Gene Set 7.675e-08 144 1.074e-06 171 Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 8.058e-08 180 1.121e-06 172 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad MULLIGHAN_MLL_SIGNATURE_2_UP View Gene Set 8.232e-08 393 1.138e-06 173 The 'MLL signature 2': genes up-regulated in pediatric AML (acute myeloid leukemia) with rearranged MLL [Gene ID=4297] compared to the AML cases with intact MLL and NPM1 [Gene ID=4869]. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 9.082e-08 155 1.249e-06 174 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_480_HELA View Gene Set 9.14e-08 159 1.249e-06 175 Genes whose expression peaked at 480 min after stimulation of HeLa cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_UP View Gene Set 9.523e-08 78 1.294e-06 176 Genes up-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion. www.broad.mit.e...
Broad GAZDA_DIAMOND_BLACKFAN_ANEMIA_PROGENITOR_DN View Gene Set 9.711e-08 61 1.311e-06 177 Genes down-regulated in common hematopoietic progenitor cells isolated from bone marrow of patients with Diamond-Blackfan anemia (DBA) and mutated RPS19 [Gene ID=6223]. www.broad.mit.e...
Broad WAMUNYOKOLI_OVARIAN_CANCER_LMP_UP View Gene Set 9.754e-08 244 1.311e-06 177 Genes up-regulated in mucinous ovarian carcinoma tumors of low malignant potential (LMP) compared to normal ovarian surface epithelium tissue. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN View Gene Set 1.007e-07 583 1.338e-06 179 Down-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP View Gene Set 1.012e-07 224 1.338e-06 179 Genes up-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_DN View Gene Set 1.012e-07 224 1.338e-06 179 Genes down-regulated in hematopoietic stem cells (HSC CD34+ [Gene ID=947]) cultured in a three-dimentional collagen gel compared to the cells grown in suspension. www.broad.mit.e...
Broad SEIDEN_ONCOGENESIS_BY_MET View Gene Set 1.115e-07 83 1.465e-06 182 Genes changed in xenograft tumors formed by DLD-1 or DKO-4 cells (colon cancer) overexpressing MET [Gene ID=4233]. www.broad.mit.e...
Broad WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_DN View Gene Set 1.332e-07 90 1.742e-06 183 Genes down-regulated in rectal cancer patients resistant to radiotherapy (non-responders) relative to the sensitive ones (responders). www.broad.mit.e...
Broad SHAFFER_IRF4_TARGETS_IN_MYELOMA_VS_MATURE_B_LYMPHOCYTE View Gene Set 1.362e-07 95 1.77e-06 184 IRF4 [Gene ID=3662] target genes up-regulated in primary myeloma vs. mature B lymphocytes. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_240_MCF10A View Gene Set 1.497e-07 57 1.935e-06 185 Genes whose expression peaked at 240 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 1.595e-07 201 2.052e-06 186 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad CROONQUIST_NRAS_VS_STROMAL_STIMULATION_DN View Gene Set 1.82e-07 81 2.328e-06 187 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing an activated form of NRAS [Gene ID=4893] off a plasmid vector compared to those co-cultured with bone marrow stromal cells. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_BY_DMOG_UP View Gene Set 1.874e-07 125 2.384e-06 188 Genes up-regulated in MCF7 cells (breast cancer) treated with hypoxia mimetic DMOG [PubChem=3080614]. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 2.105e-07 143 2.664e-06 189 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad PROVENZANI_METASTASIS_DN View Gene Set 2.146e-07 135 2.699e-06 190 Genes down-regulated in polysomal and total RNA samples from SW480 cells (primary colorectal carcinoma CRC) compared to the SW620 cells (lymph node metastasis from the same individual). www.broad.mit.e...
Broad MARTINEZ_RB1_TARGETS_UP View Gene Set 2.156e-07 613 2.699e-06 190 Genes up-regulated in mice with skin specific knockout of RB1 [Gene ID=5925] by Cre-lox. www.broad.mit.e...
Broad MATSUDA_NATURAL_KILLER_DIFFERENTIATION View Gene Set 2.298e-07 430 2.863e-06 192 Genes changed between developmental stages of Valpha14i natural killer T lymphocyte cells (NKT). www.broad.mit.e...
Broad MILI_PSEUDOPODIA_CHEMOTAXIS_DN View Gene Set 2.365e-07 430 2.931e-06 193 Transcripts depleted in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988]. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 2.513e-07 158 3.098e-06 194 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN View Gene Set 2.563e-07 256 3.144e-06 195 Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 2.822e-07 124 3.444e-06 196 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 2.845e-07 139 3.454e-06 197 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad LIAO_METASTASIS View Gene Set 3.001e-07 513 3.626e-06 198 Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_120_MCF10A View Gene Set 3.076e-07 41 3.697e-06 199 Genes whose expression peaked at 120 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN View Gene Set 3.118e-07 76 3.73e-06 200 Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SA_CASPASE_CASCADE View Gene Set 0.000593 15 0.02787 1 Apoptosis is mediated by caspases cysteine proteases arranged in a proteolytic cascade. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_ATM_PATHWAY View Gene Set 0.0001474 20 0.03199 1 ATM Signaling Pathway www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_SPLICEOSOME View Gene Set 1.009e-08 118 1.876e-06 1 Spliceosome www.broad.mit.e...
Broad KEGG_CELL_CYCLE View Gene Set 3.888e-08 128 3.616e-06 2 Cell cycle www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 1.059e-07 98 6.563e-06 3 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 2.437e-06 36 0.0001133 4 DNA replication www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR View Gene Set 7.451e-06 35 0.0002772 5 Base excision repair www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS View Gene Set 2.065e-05 41 0.00064 6 Aminoacyl-tRNA biosynthesis www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 2.905e-05 44 0.0007426 7 Nucleotide excision repair www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 3.194e-05 138 0.0007426 7 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_PURINE_METABOLISM View Gene Set 8.065e-05 157 0.001667 9 Purine metabolism www.broad.mit.e...
Broad KEGG_RNA_POLYMERASE View Gene Set 0.0005952 29 0.01107 10 RNA polymerase www.broad.mit.e...
Broad KEGG_NOD_LIKE_RECEPTOR_SIGNALING_PATHWAY View Gene Set 0.0007426 62 0.01256 11 NOD-like receptor signaling pathway www.broad.mit.e...
Broad KEGG_ONE_CARBON_POOL_BY_FOLATE View Gene Set 0.001309 17 0.01873 12 One carbon pool by folate www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION View Gene Set 0.00123 59 0.01873 12 RNA degradation www.broad.mit.e...
Broad KEGG_LYSOSOME View Gene Set 0.001638 122 0.02177 14 Lysosome www.broad.mit.e...
Broad KEGG_AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM View Gene Set 0.002807 44 0.0348 15 Amino sugar and nucleotide sugar metabolism www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS View Gene Set 0.003568 11 0.04148 16 Valine leucine and isoleucine biosynthesis www.broad.mit.e...
Broad KEGG_PATHOGENIC_ESCHERICHIA_COLI_INFECTION View Gene Set 0.003997 59 0.04374 17 Pathogenic Escherichia coli infection www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR View Gene Set 0.004378 23 0.04524 18 Mismatch repair www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 1.397e-11 306 3.004e-09 1 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 1.08e-11 128 3.004e-09 1 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 9.248e-10 124 7.954e-08 3 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 8.529e-10 142 7.954e-08 3 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 7.751e-10 415 7.954e-08 3 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 5.125e-09 97 3.673e-07 6 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 6.541e-09 95 4.018e-07 7 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 5.228e-08 102 2.81e-06 8 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 6.52e-08 103 3.115e-06 9 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 9.585e-08 102 3.747e-06 10 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 9.406e-08 183 3.747e-06 10 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 1.238e-07 103 4.337e-06 12 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 1.311e-07 188 4.337e-06 12 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 3.525e-07 50 1.083e-05 14 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 4.826e-07 90 1.383e-05 15 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 1.115e-06 77 2.997e-05 16 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION View Gene Set 4.121e-06 120 0.0001042 17 Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 4.65e-06 89 0.0001111 18 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 5.6e-06 31 0.0001267 19 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 1.021e-05 30 0.0002195 20 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 1.108e-05 30 0.0002269 21 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 1.479e-05 157 0.0002891 22 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 1.572e-05 31 0.0002939 23 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 2.167e-05 29 0.0003882 24 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION View Gene Set 2.613e-05 40 0.0004439 25 Genes involved in tRNA Aminoacylation www.broad.mit.e...
Broad REACTOME_SMOOTH_MUSCLE_CONTRACTION View Gene Set 2.684e-05 24 0.0004439 25 Genes involved in Smooth Muscle Contraction www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE View Gene Set 3.067e-05 82 0.0004884 27 Genes involved in RNA PolymerasePromoter Clearance www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 3.773e-05 42 0.0005795 28 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 4.14e-05 110 0.0006139 29 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 4.477e-05 31 0.0006417 30 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 5.492e-05 120 0.0007619 31 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 8.365e-05 29 0.001124 32 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 8.93e-05 32 0.001164 33 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 9.543e-05 49 0.001207 34 Genes involved in Nucleotide Excision Repair www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 0.0001065 76 0.001308 35 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 0.0001128 28 0.001347 36 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 0.0002509 84 0.002916 37 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION View Gene Set 0.000259 83 0.00293 38 Genes involved in RNA Polymerase II Transcription www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER View Gene Set 0.000284 44 0.003131 39 Genes involved in Transcription-coupled NER (TC-NER) www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE View Gene Set 0.0003576 14 0.003845 40 Genes involved in Removal of the Flap Intermediate www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 0.0003952 92 0.004144 41 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION View Gene Set 0.0004212 20 0.004312 42 Genes involved in Mitochondrial tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_BASE_EXCISION_REPAIR View Gene Set 0.0005318 18 0.005197 43 Genes involved in Base Excision Repair www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY View Gene Set 0.0005233 38 0.005197 43 Genes involved in mRNA Splicing - Minor Pathway www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER View Gene Set 0.0005555 33 0.005308 45 Genes involved in Global Genomic NER (GG-NER) www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 0.0007097 63 0.006634 46 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING View Gene Set 0.0007304 59 0.006682 47 Genes involved in RNA Polymerase I Promoter Opening www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION View Gene Set 0.0007513 34 0.006731 48 Genes involved in RNA PolymeraseChain Elongation www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN View Gene Set 0.0007803 29 0.006847 49 Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 0.0008311 43 0.007007 50 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS View Gene Set 0.0008256 49 0.007007 50 Genes involved in Packaging Of Telomere Ends www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ View Gene Set 0.0009007 58 0.007343 52 Genes involved in Cyclin E associated events during G1/S transition www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE View Gene Set 0.000905 20 0.007343 52 Genes involved in RNA Polymerase I Promoter Escape www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 0.0009704 11 0.007587 54 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS View Gene Set 0.0009559 11 0.007587 54 Genes involved in Purine ribonucleoside monophosphate biosynthesis www.broad.mit.e...
Broad REACTOME_NUCLEAR_EVENTS_KINASE_AND_TRANSCRIPTION_FACTOR_ACTIVATION View Gene Set 0.001081 24 0.008299 56 Genes involved in Nuclear Events (kinase and transcription factor activation) www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 0.001231 45 0.009289 57 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_MAPK_TARGETS_NUCLEAR_EVENTS_MEDIATED_BY_MAP_KINASES View Gene Set 0.001578 30 0.0117 58 Genes involved in MAPK targets/Nuclear events mediated by MAP kinases www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.001643 21 0.01197 59 Genes involved in Double-Strand Break Repair www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 0.00186 71 0.01333 60 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION View Gene Set 0.001917 72 0.01351 61 Genes involved in Centrosome maturation www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME View Gene Set 0.002015 59 0.01397 62 Genes involved in Transcription of the HIV genome www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS View Gene Set 0.002126 20 0.01451 63 Genes involved in Lagging Strand Synthesis www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS View Gene Set 0.002241 54 0.01505 64 Genes involved in Golgi Associated Vesicle Biogenesis www.broad.mit.e...
Broad REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION View Gene Set 0.002293 23 0.01517 65 Genes involved in Cytosolic tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 0.002478 37 0.0159 66 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_INITIATION View Gene Set 0.002464 39 0.0159 66 Genes involved in HIV-1 Transcription Initiation www.broad.mit.e...
Broad REACTOME_MUSCLE_CONTRACTION View Gene Set 0.002586 51 0.01633 68 Genes involved in Muscle contraction www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND View Gene Set 0.002621 10 0.01633 68 Genes involved in Removal of the Flap Intermediate from the C-strand www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING View Gene Set 0.002838 61 0.01744 70 Genes involved in Clathrin derived vesicle budding www.broad.mit.e...
Broad REACTOME_APOPTOSIS View Gene Set 0.002948 129 0.01785 71 Genes involved in Apoptosis www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 0.003168 33 0.01889 72 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_DNA_PATCH_CONTAINING_ABASIC_RESIDUE View Gene Set 0.003231 15 0.01889 72 Genes involved in Removal of DNA patch containing abasic residue www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA View Gene Set 0.00325 21 0.01889 72 Genes involved in Deadenylation of mRNA www.broad.mit.e...
Broad REACTOME_HIV1_TRANSCRIPTION_ELONGATION View Gene Set 0.003423 41 0.01962 75 Genes involved in HIV-1 Transcription Elongation www.broad.mit.e...
Broad REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES View Gene Set 0.003473 62 0.01965 76 Genes involved in Loss of Nlp from mitotic centrosomes www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_EARLY_ELONGATION_COMPLEX View Gene Set 0.003615 32 0.02019 77 Genes involved in Formation of the Early Elongation Complex www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM View Gene Set 0.00373 18 0.02056 78 Genes involved in Pyruvate metabolism www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE View Gene Set 0.004499 36 0.02449 79 Genes involved in Pyruvate metabolism and TCA cycle www.broad.mit.e...
Broad REACTOME_SYNTHESIS_AND_INTERCONVERSION_OF_NUCLEOTIDE_DI_AND_TRIPHOSPHATES View Gene Set 0.004757 18 0.02557 80 Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_INITIATION View Gene Set 0.005727 24 0.03019 81 Genes involved in RNA PolymeraseTranscription Initiation www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21 View Gene Set 0.005757 52 0.03019 81 Genes involved in SCF(Skp2)-mediated degradation of p2721 www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 0.006344 61 0.03287 83 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_TC_NER View Gene Set 0.006426 28 0.0329 84 Genes involved in Dual incision reaction in TC-NER www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_GG_NER View Gene Set 0.006722 20 0.03361 85 Genes involved in Dual incision reaction in GG-NER www.broad.mit.e...
Broad REACTOME_ERK_MAPK_TARGETS View Gene Set 0.006701 21 0.03361 85 Genes involved in ERK/MAPK targets www.broad.mit.e...
Broad REACTOME_MAP_KINASES_ACTIVATION_IN_TLR_CASCADE View Gene Set 0.007558 44 0.03736 87 Genes involved in MAP kinases activation in TLR cascade www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES View Gene Set 0.007881 119 0.03851 88 Genes involved in Metabolism of carbohydrates www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR View Gene Set 0.008503 15 0.04029 89 Genes involved in Homologous Recombination Repair www.broad.mit.e...
Broad REACTOME_MEMBRANE_TRAFFICKING View Gene Set 0.008527 78 0.04029 89 Genes involved in Membrane Trafficking www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_TERMINATION View Gene Set 0.008357 21 0.04029 89 Genes involved in RNA PolymeraseTranscription Termination www.broad.mit.e...
Broad REACTOME_RNA_POL_II_CTD_PHOSPHORYLATION_AND_INTERACTION_WITH_CE View Gene Set 0.00946 26 0.04422 92 Genes involved in RNA Pol II CTD phosphorylation and interaction with CE www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER View Gene Set 0.01018 22 0.04655 93 Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter www.broad.mit.e...
Broad REACTOME_GLUCOSE_TRANSPORT View Gene Set 0.0101 38 0.04655 93 Genes involved in Glucose transport www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_3_TO_5_EXORIBONUCLEASE View Gene Set 0.01029 11 0.04657 95 Genes involved in mRNA Decay by 3' to 5' Exoribonuclease www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad ACCAAAG MIR-9 View Gene Set 0.0001519 428 0.01678 1 Targets of MicroRNA ACCAAAG MIR-9 www.broad.mit.e... MIR-9...
Broad ATTCTTT MIR-186 View Gene Set 0.0001359 232 0.01678 1 Targets of MicroRNA ATTCTTT MIR-186 www.broad.mit.e... MIR-186...
Broad CAGCTTT MIR-320 View Gene Set 0.0004017 220 0.0296 3 Targets of MicroRNA CAGCTTT MIR-320 www.broad.mit.e... MIR-320...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GGGCGGR_V$SP1_Q6 View Gene Set 6.518e-10 2120 4.009e-07 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$USF_01 View Gene Set 6.037e-08 186 1.856e-05 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 9.944e-08 580 2.038e-05 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad CACGTG_V$MYC_Q2 View Gene Set 1.676e-07 734 2.577e-05 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad V$SREBP1_01 View Gene Set 7.588e-07 133 9.334e-05 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B View Gene Set 1.002e-06 512 0.0001027 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$USF_02 View Gene Set 2.957e-06 197 0.0002598 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRNCACGTGNYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 2.645e-05 167 0.002034 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02 View Gene Set 4.346e-05 784 0.00297 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad GGGNRMNNYCAT_UNKNOWN View Gene Set 4.876e-05 61 0.002999 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGGNRMNNYCAT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ERR1_Q2 View Gene Set 7.698e-05 193 0.003506 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTNAAGGTCANN which matches annotation for ESRRA: estrogen-related receptor alpha www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 7.981e-05 169 0.003506 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 7.981e-05 169 0.003506 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 7.981e-05 169 0.003506 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F_02 View Gene Set 8.697e-05 169 0.003566 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01 View Gene Set 9.861e-05 122 0.00379 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad V$E2F4DP1_01 View Gene Set 0.000186 174 0.006729 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad RRCCGTTA_UNKNOWN View Gene Set 0.0002018 53 0.006896 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RRCCGTTA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CREB_02 View Gene Set 0.0003193 185 0.01034 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGNTGACGTNN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad V$ARNT_01 View Gene Set 0.0007326 196 0.02145 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...
Broad GKCGCNNNNNNNTGAYG_UNKNOWN View Gene Set 0.0007092 41 0.02145 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GKCGCNNNNNNNTGAYG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q4 View Gene Set 0.000923 166 0.02502 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 0.0009449 165 0.02502 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$USF2_Q6 View Gene Set 0.001017 182 0.02502 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CASGYG. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGCNNMSMYNTTG_UNKNOWN View Gene Set 0.001006 56 0.02502 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNNMSMYNTTG. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 0.001127 289 0.02666 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$MAX_01 View Gene Set 0.001558 194 0.03549 27 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X www.broad.mit.e...
Broad V$USF_Q6_01 View Gene Set 0.001662 168 0.0365 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NRCCACGTGASN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ARNT_02 View Gene Set 0.001836 179 0.03894 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNRTCACGTGAYNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...
Broad V$NRF1_Q6 View Gene Set 0.002016 151 0.04134 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGCATGCGCR which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$NFKAPPAB_01 View Gene Set 0.002166 191 0.04297 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAMTTYCC which matches annotation for NFKB<br> RELA: v-rel reticuloendotheliosis viral oncogene homolog A nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 p65 (avian) www.broad.mit.e...
Broad V$MYC_Q2 View Gene Set 0.002329 135 0.0434 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTGS which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad V$E2F1_Q6_01 View Gene Set 0.002316 177 0.0434 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MORF_BUB3 View Gene Set 1.499e-18 256 6.401e-16 1 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 2.941e-16 256 6.28e-14 2 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 4.59e-16 220 6.533e-14 3 Neighborhood of EIF3S2 www.broad.mit.e...
Broad MORF_DEK View Gene Set 1.362e-15 229 1.293e-13 4 Neighborhood of DEK www.broad.mit.e...
Broad MORF_FBL View Gene Set 1.515e-15 121 1.293e-13 4 Neighborhood of FBL www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 4.154e-15 316 2.956e-13 6 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 1.355e-13 173 8.266e-12 7 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 2.341e-13 178 1.249e-11 8 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_AATF View Gene Set 6.033e-13 179 2.862e-11 9 Neighborhood of AATF www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 1.323e-12 72 5.649e-11 10 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 5.337e-12 145 2.072e-10 11 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 8.332e-12 210 2.965e-10 12 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 1.181e-11 247 3.88e-10 13 Neighborhood of SOD1 www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 3.61e-11 276 1.043e-09 14 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_RAN View Gene Set 3.664e-11 242 1.043e-09 14 Neighborhood of RAN www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 5.416e-11 174 1.445e-09 16 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 5.834e-11 73 1.465e-09 17 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 1.354e-10 155 3.212e-09 18 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 6.364e-10 256 1.43e-08 19 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 8.178e-10 222 1.746e-08 20 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 1.34e-09 150 2.724e-08 21 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 1.826e-09 208 3.544e-08 22 Neighborhood of UBE2I www.broad.mit.e...
Broad GNF2_RAN View Gene Set 2.144e-09 78 3.98e-08 23 Neighborhood of RAN www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 2.548e-09 57 4.533e-08 24 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 3.325e-09 175 5.679e-08 25 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 3.912e-09 82 6.424e-08 26 Neighborhood of RRM1 www.broad.mit.e...
Broad GNF2_NS View Gene Set 6.751e-09 35 1.068e-07 27 Neighborhood of NS www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 1.254e-08 202 1.913e-07 28 Neighborhood of PRKAG1 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 1.723e-08 75 2.536e-07 29 Neighborhood of SMC4L1 www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 2.579e-08 79 3.671e-07 30 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 3.584e-08 175 4.783e-07 31 Neighborhood of SKP1A www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 3.583e-08 36 4.783e-07 31 Neighborhood of MLH1 www.broad.mit.e...
Broad MORF_UNG View Gene Set 3.738e-08 65 4.837e-07 33 Neighborhood of UNG www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 5.095e-08 137 6.398e-07 34 Neighborhood of RFC4 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 5.942e-08 59 7.25e-07 35 Neighborhood of CBFB www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 7.226e-08 170 8.57e-07 36 Neighborhood of RPA2 www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 8.084e-08 105 9.329e-07 37 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 1.09e-07 157 1.193e-06 38 Neighborhood of RAD21 www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 1.086e-07 51 1.193e-06 38 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 1.155e-07 220 1.212e-06 40 Neighborhood of DDB1 www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 1.163e-07 113 1.212e-06 40 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 1.364e-07 196 1.387e-06 42 Neighborhood of RAC1 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 1.4e-07 45 1.39e-06 43 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 1.749e-07 52 1.697e-06 44 Neighborhood of KPNB1 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 1.878e-07 71 1.782e-06 45 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 1.923e-07 120 1.785e-06 46 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 2.196e-07 98 1.995e-06 47 Neighborhood of PAPSS1 www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 2.629e-07 30 2.339e-06 48 Neighborhood of MSH6 www.broad.mit.e...
Broad MORF_EI24 View Gene Set 2.696e-07 136 2.349e-06 49 Neighborhood of EI24 www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 3.121e-07 54 2.666e-06 50 Neighborhood of RBBP6 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 3.737e-07 47 3.124e-06 51 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 3.804e-07 29 3.124e-06 51 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 5.268e-07 108 4.244e-06 53 Neighborhood of EIF3S6 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 5.81e-07 45 4.594e-06 54 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 5.974e-07 57 4.638e-06 55 Neighborhood of TERF1 www.broad.mit.e...
Broad GNF2_FBL View Gene Set 6.692e-07 119 5.103e-06 56 Neighborhood of FBL www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 7.444e-07 58 5.577e-06 57 Neighborhood of ESPL1 www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 7.706e-07 102 5.673e-06 58 Neighborhood of APEX1 www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 8.624e-07 57 6.242e-06 59 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 8.91e-07 94 6.341e-06 60 Neighborhood of RAF1 www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 1.015e-06 179 7.106e-06 61 Neighborhood of RAB1A www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 1.461e-06 50 1.006e-05 62 Neighborhood of MCM4 www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 1.714e-06 90 1.143e-05 63 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 1.697e-06 145 1.143e-05 63 Neighborhood of PPP1CA www.broad.mit.e...
Broad MORF_ERH View Gene Set 1.857e-06 103 1.22e-05 65 Neighborhood of ERH www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 2.055e-06 197 1.33e-05 66 Neighborhood of AP2M1 www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 2.314e-06 58 1.475e-05 67 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 2.405e-06 26 1.51e-05 68 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 2.607e-06 94 1.59e-05 69 Neighborhood of RAD54L www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 2.589e-06 38 1.59e-05 69 Neighborhood of RFC3 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 2.97e-06 55 1.786e-05 71 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 3.059e-06 39 1.814e-05 72 Neighborhood of DENR www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 3.333e-06 62 1.949e-05 73 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 3.686e-06 63 2.127e-05 74 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 4.154e-06 52 2.365e-05 75 Neighborhood of MSH2 www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 4.228e-06 52 2.375e-05 76 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 4.51e-06 110 2.469e-05 77 Neighborhood of PPP2CA www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 4.496e-06 46 2.469e-05 77 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 6.255e-06 95 3.381e-05 79 Neighborhood of MTA1 www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 7.806e-06 32 4.167e-05 80 Neighborhood of ELAC2 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 8.053e-06 67 4.245e-05 81 Neighborhood of CDC16 www.broad.mit.e...
Broad GCM_CSNK2B View Gene Set 9.48e-06 88 4.936e-05 82 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_CCNI View Gene Set 1.071e-05 76 5.509e-05 83 Neighborhood of CCNI www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 1.593e-05 49 8.097e-05 84 Neighborhood of FEN1 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 1.76e-05 47 8.841e-05 85 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_EIF4A2 View Gene Set 1.85e-05 120 9.183e-05 86 Neighborhood of EIF4A2 www.broad.mit.e...
Broad GNF2_TDG View Gene Set 2.128e-05 23 0.0001044 87 Neighborhood of TDG www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 3.919e-05 144 0.000188 88 Neighborhood of MAP4K4 www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 3.898e-05 33 0.000188 88 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 4.508e-05 159 0.0002115 90 Neighborhood of RAD23B www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 4.49e-05 36 0.0002115 90 Neighborhood of CKS1B www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 5.007e-05 62 0.0002324 92 Neighborhood of CUL1 www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 5.463e-05 76 0.0002508 93 Neighborhood of EIF4E www.broad.mit.e...
Broad MORF_NPM1 View Gene Set 5.968e-05 152 0.0002711 94 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 6.649e-05 149 0.0002989 95 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 6.985e-05 99 0.0003107 96 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 8.099e-05 88 0.0003529 97 Neighborhood of PPP6C www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 8.074e-05 61 0.0003529 97 Neighborhood of XRCC5 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 8.979e-05 56 0.0003873 99 Neighborhood of CENPF www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 9.231e-05 32 0.0003942 100 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 0.0001038 133 0.0004388 101 Neighborhood of PRKAR1A www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 0.0001305 119 0.0005465 102 Neighborhood of AP3D1 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 0.0001507 36 0.0006249 103 Neighborhood of RRM2 www.broad.mit.e...
Broad GNF2_MSN View Gene Set 0.0001577 24 0.0006474 104 Neighborhood of MSN www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 0.0001668 100 0.0006782 105 Neighborhood of PSMC2 www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 0.0001827 85 0.0007358 106 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 0.0002045 61 0.0008086 107 Neighborhood of BUB1B www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 0.0002031 76 0.0008086 107 Neighborhood of PSME1 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 0.0002108 162 0.0008256 109 Neighborhood of PSMC1 www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 0.0002134 29 0.0008285 110 Neighborhood of G22P1 www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 0.0002333 34 0.0008974 111 Neighborhood of RAF1 www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.0002638 24 0.001006 112 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_SP3 View Gene Set 0.0002882 69 0.001089 113 Neighborhood of SP3 www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 0.0003149 50 0.00118 114 Neighborhood of SNRP70 www.broad.mit.e...
Broad MORF_SART1 View Gene Set 0.0003249 55 0.001206 115 Neighborhood of SART1 www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 0.0003733 71 0.001362 116 Neighborhood of BMI1 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.0003719 30 0.001362 116 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 0.0003787 65 0.00137 118 Neighborhood of CCNF www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 0.0003936 45 0.001412 119 Neighborhood of CKS2 www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 0.0004501 98 0.001602 120 Neighborhood of DAP3 www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.0005073 33 0.00179 121 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GNF2_TTK View Gene Set 0.0006115 34 0.00214 122 Neighborhood of TTK www.broad.mit.e...
Broad GNF2_STAT6 View Gene Set 0.0006526 75 0.002265 123 Neighborhood of STAT6 www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 0.0006661 93 0.002294 124 Neighborhood of BECN1 www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 0.0007203 62 0.00246 125 Neighborhood of CCNA2 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 0.0008575 53 0.002906 126 Neighborhood of CCNB2 www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 0.0008718 54 0.002931 127 Neighborhood of DEAF1 www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 0.0009078 41 0.003022 128 Neighborhood of GSPT1 www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 0.000913 52 0.003022 128 Neighborhood of CDC20 www.broad.mit.e...
Broad MORF_PHB View Gene Set 0.0009302 112 0.003055 130 Neighborhood of PHB www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 0.001005 123 0.003276 131 Neighborhood of MAP2K2 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 0.001056 43 0.003418 132 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 0.001074 35 0.003448 133 Neighborhood of ESPL1 www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.00117 100 0.003727 134 Neighborhood of DFFA www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 0.001282 56 0.004056 135 Neighborhood of CDC2 www.broad.mit.e...
Broad MORF_PPP2R5E View Gene Set 0.001389 76 0.00436 136 Neighborhood of PPP2R5E www.broad.mit.e...
Broad GNF2_PECAM1 View Gene Set 0.001407 50 0.004384 137 Neighborhood of PECAM1 www.broad.mit.e...
Broad MORF_RAB6A View Gene Set 0.001433 63 0.004433 138 Neighborhood of RAB6A www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.001745 138 0.005324 139 Neighborhood of MYST2 www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 0.001746 143 0.005324 139 Neighborhood of RAB10 www.broad.mit.e...
Broad GCM_CRKL View Gene Set 0.001827 50 0.005534 141 Neighborhood of CRKL www.broad.mit.e...
Broad MORF_GMPS View Gene Set 0.001933 48 0.005813 142 Neighborhood of GMPS www.broad.mit.e...
Broad GNF2_HLA-C View Gene Set 0.001983 44 0.005921 143 Neighborhood of HLA-C www.broad.mit.e...
Broad GNF2_RAP1B View Gene Set 0.002081 33 0.006172 144 Neighborhood of RAP1B www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 0.002113 30 0.006222 145 Neighborhood of SMC2L1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 0.002265 49 0.006626 146 Neighborhood of BUB1 www.broad.mit.e...
Broad GNF2_SERPINB5 View Gene Set 0.002438 25 0.007083 147 Neighborhood of SERPINB5 www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 0.002461 20 0.0071 148 Neighborhood of RPA1 www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 0.002482 108 0.007112 149 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 0.002614 76 0.007391 150 Neighborhood of MBD4 www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 0.002599 93 0.007391 150 Neighborhood of PTPN11 www.broad.mit.e...
Broad GCM_ZNF198 View Gene Set 0.002954 98 0.008298 152 Neighborhood of ZNF198 www.broad.mit.e...
Broad GNF2_CDH3 View Gene Set 0.003006 24 0.008389 153 Neighborhood of CDH3 www.broad.mit.e...
Broad GCM_SIRT2 View Gene Set 0.003252 39 0.009017 154 Neighborhood of SIRT2 www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.003429 44 0.009446 155 Neighborhood of UBE2A www.broad.mit.e...
Broad GCM_RAP2A View Gene Set 0.003866 30 0.01058 156 Neighborhood of RAP2A www.broad.mit.e...
Broad GNF2_PTX3 View Gene Set 0.00392 36 0.01066 157 Neighborhood of PTX3 www.broad.mit.e...
Broad GCM_NF2 View Gene Set 0.003961 235 0.01071 158 Neighborhood of NF2 www.broad.mit.e...
Broad GCM_DLG1 View Gene Set 0.004142 63 0.01112 159 Neighborhood of DLG1 www.broad.mit.e...
Broad GCM_UBE2N View Gene Set 0.004351 125 0.01161 160 Neighborhood of UBE2N www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 0.004643 22 0.01231 161 Neighborhood of BUB3 www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 0.00514 68 0.01355 162 Neighborhood of BMPR2 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 0.005994 37 0.0157 163 Neighborhood of CENPE www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 0.006205 79 0.016 164 Neighborhood of PRDX3 www.broad.mit.e...
Broad GCM_MAP1B View Gene Set 0.00622 55 0.016 164 Neighborhood of MAP1B www.broad.mit.e...
Broad GNF2_MMP1 View Gene Set 0.00616 32 0.016 164 Neighborhood of MMP1 www.broad.mit.e...
Broad GCM_MAX View Gene Set 0.0081 28 0.02071 167 Neighborhood of MAX www.broad.mit.e...
Broad MORF_ACTG1 View Gene Set 0.008208 134 0.02086 168 Neighborhood of ACTG1 www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 0.008395 26 0.02121 169 Neighborhood of CBFB www.broad.mit.e...
Broad GCM_ERBB2IP View Gene Set 0.009196 57 0.02296 170 Neighborhood of ERBB2IP www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 0.009167 26 0.02296 170 Neighborhood of MKI67 www.broad.mit.e...
Broad MORF_XPC View Gene Set 0.00942 55 0.02339 172 Neighborhood of XPC www.broad.mit.e...
Broad GCM_IL6ST View Gene Set 0.01124 48 0.02774 173 Neighborhood of IL6ST www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.0117 131 0.02855 174 Neighborhood of TPR www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 0.01168 28 0.02855 174 Neighborhood of H2AFX www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 0.01214 48 0.02946 176 Neighborhood of BAG5 www.broad.mit.e...
Broad MORF_NME2 View Gene Set 0.0126 145 0.0304 177 Neighborhood of NME2 www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 0.01287 28 0.03088 178 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad GNF2_CDH11 View Gene Set 0.0138 25 0.03292 179 Neighborhood of CDH11 www.broad.mit.e...
Broad MORF_REV3L View Gene Set 0.01396 52 0.03313 180 Neighborhood of REV3L www.broad.mit.e...
Broad GCM_RAN View Gene Set 0.01427 160 0.03365 181 Neighborhood of RAN www.broad.mit.e...
Broad GCM_PTK2 View Gene Set 0.01606 126 0.03768 182 Neighborhood of PTK2 www.broad.mit.e...
Broad GCM_HDAC1 View Gene Set 0.0163 30 0.03803 183 Neighborhood of HDAC1 www.broad.mit.e...
Broad GCM_NCAM1 View Gene Set 0.01702 111 0.03951 184 Neighborhood of NCAM1 www.broad.mit.e...
Broad MORF_PPP2R4 View Gene Set 0.0184 44 0.04247 185 Neighborhood of PPP2R4 www.broad.mit.e...
Broad GNF2_MYD88 View Gene Set 0.01896 55 0.04353 186 Neighborhood of MYD88 www.broad.mit.e...
Broad GNF2_BNIP2 View Gene Set 0.01919 31 0.04381 187 Neighborhood of BNIP2 www.broad.mit.e...
Broad GNF2_CD53 View Gene Set 0.02122 54 0.04821 188 Neighborhood of CD53 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_3 View Gene Set 2.044e-27 374 9.281e-25 1 Genes in module_3 www.broad.mit.e...
Broad module_17 View Gene Set 7.222e-20 351 1.639e-17 2 Genes in module_17 www.broad.mit.e...
Broad module_18 View Gene Set 8.632e-18 434 1.306e-15 3 Genes in module_18 www.broad.mit.e...
Broad module_52 View Gene Set 5.603e-17 415 6.359e-15 4 Genes in module_52 www.broad.mit.e...
Broad module_8 View Gene Set 1.248e-15 403 1.133e-13 5 Genes in module_8 www.broad.mit.e...
Broad module_198 View Gene Set 3.817e-15 288 2.888e-13 6 Genes in module_198 www.broad.mit.e...
Broad module_98 View Gene Set 5.419e-15 375 3.515e-13 7 Genes in module_98 www.broad.mit.e...
Broad module_252 View Gene Set 3.23e-14 224 1.833e-12 8 Genes in module_252 www.broad.mit.e...
Broad module_126 View Gene Set 6.348e-14 173 3.202e-12 9 Genes in module_126 www.broad.mit.e...
Broad module_54 View Gene Set 6.231e-12 242 2.829e-10 10 Genes in module_54 www.broad.mit.e...
Broad module_321 View Gene Set 3.881e-10 107 1.602e-08 11 Genes in module_321 www.broad.mit.e...
Broad module_105 View Gene Set 8.919e-10 192 3.374e-08 12 Genes in module_105 www.broad.mit.e...
Broad module_15 View Gene Set 1.703e-08 347 5.949e-07 13 Genes in module_15 www.broad.mit.e...
Broad module_72 View Gene Set 1.201e-07 293 3.894e-06 14 Genes in module_72 www.broad.mit.e...
Broad module_1 View Gene Set 7.614e-07 355 2.305e-05 15 Genes in module_1 www.broad.mit.e...
Broad module_197 View Gene Set 9.665e-07 170 2.742e-05 16 Genes in module_197 www.broad.mit.e...
Broad module_124 View Gene Set 1.185e-06 92 3.164e-05 17 Genes in module_124 www.broad.mit.e...
Broad module_244 View Gene Set 1.502e-06 182 3.789e-05 18 Genes in module_244 www.broad.mit.e...
Broad module_32 View Gene Set 3.091e-06 227 7.016e-05 19 Genes in module_32 www.broad.mit.e...
Broad module_61 View Gene Set 3.008e-06 50 7.016e-05 19 Genes in module_61 www.broad.mit.e...
Broad module_357 View Gene Set 3.261e-06 78 7.051e-05 21 Genes in module_357 www.broad.mit.e...
Broad module_5 View Gene Set 3.663e-06 420 7.559e-05 22 Genes in module_5 www.broad.mit.e...
Broad module_159 View Gene Set 5.756e-06 81 0.0001136 23 Genes in module_159 www.broad.mit.e...
Broad module_118 View Gene Set 9.946e-06 393 0.0001881 24 Genes in module_118 www.broad.mit.e...
Broad module_297 View Gene Set 1.083e-05 78 0.0001967 25 Genes in module_297 www.broad.mit.e...
Broad module_16 View Gene Set 2.811e-05 495 0.0004727 26 Genes in module_16 www.broad.mit.e...
Broad module_177 View Gene Set 2.794e-05 101 0.0004727 26 Genes in module_177 www.broad.mit.e...
Broad module_158 View Gene Set 2.994e-05 41 0.0004854 28 Genes in module_158 www.broad.mit.e...
Broad module_154 View Gene Set 3.432e-05 73 0.0005373 29 Genes in module_154 www.broad.mit.e...
Broad module_114 View Gene Set 5.03e-05 314 0.0007186 30 Genes in module_114 www.broad.mit.e...
Broad module_125 View Gene Set 4.847e-05 42 0.0007186 30 Genes in module_125 www.broad.mit.e...
Broad module_152 View Gene Set 5.065e-05 121 0.0007186 30 Genes in module_152 www.broad.mit.e...
Broad module_151 View Gene Set 6.511e-05 297 0.0008958 33 Genes in module_151 www.broad.mit.e...
Broad module_2 View Gene Set 6.934e-05 373 0.0009258 34 Genes in module_2 www.broad.mit.e...
Broad module_219 View Gene Set 7.611e-05 26 0.0009873 35 Genes in module_219 www.broad.mit.e...
Broad module_35 View Gene Set 8.979e-05 16 0.001132 36 Genes in module_35 www.broad.mit.e...
Broad module_53 View Gene Set 9.317e-05 389 0.001143 37 Genes in module_53 www.broad.mit.e...
Broad module_57 View Gene Set 0.0001108 54 0.001324 38 Genes in module_57 www.broad.mit.e...
Broad module_457 View Gene Set 0.000121 9 0.001409 39 Genes in module_457 www.broad.mit.e...
Broad module_524 View Gene Set 0.0001718 30 0.00195 40 Genes in module_524 www.broad.mit.e...
Broad module_110 View Gene Set 0.0002323 15 0.002511 41 Genes in module_110 www.broad.mit.e...
Broad module_273 View Gene Set 0.0002318 50 0.002511 41 Genes in module_273 www.broad.mit.e...
Broad module_144 View Gene Set 0.0002437 8 0.002573 43 Genes in module_144 www.broad.mit.e...
Broad module_47 View Gene Set 0.0002663 216 0.002748 44 Genes in module_47 www.broad.mit.e...
Broad module_392 View Gene Set 0.0002779 18 0.002804 45 Genes in module_392 www.broad.mit.e...
Broad module_83 View Gene Set 0.0003305 296 0.003193 46 Genes in module_83 www.broad.mit.e...
Broad module_293 View Gene Set 0.0003276 12 0.003193 46 Genes in module_293 www.broad.mit.e...
Broad module_36 View Gene Set 0.0003389 146 0.003206 48 Genes in module_36 www.broad.mit.e...
Broad module_355 View Gene Set 0.0003546 28 0.003285 49 Genes in module_355 www.broad.mit.e...
Broad module_337 View Gene Set 0.0003676 59 0.003338 50 Genes in module_337 www.broad.mit.e...
Broad module_102 View Gene Set 0.0004652 18 0.004061 51 Genes in module_102 www.broad.mit.e...
Broad module_183 View Gene Set 0.0004572 52 0.004061 51 Genes in module_183 www.broad.mit.e...
Broad module_182 View Gene Set 0.000708 94 0.006065 53 Genes in module_182 www.broad.mit.e...
Broad module_421 View Gene Set 0.0007294 23 0.006132 54 Genes in module_421 www.broad.mit.e...
Broad module_352 View Gene Set 0.0007571 17 0.00625 55 Genes in module_352 www.broad.mit.e...
Broad module_261 View Gene Set 0.0007893 91 0.006399 56 Genes in module_261 www.broad.mit.e...
Broad module_363 View Gene Set 0.0008125 48 0.006472 57 Genes in module_363 www.broad.mit.e...
Broad module_212 View Gene Set 0.0009841 316 0.007703 58 Genes in module_212 www.broad.mit.e...
Broad module_136 View Gene Set 0.001068 426 0.008218 59 Genes in module_136 www.broad.mit.e...
Broad module_133 View Gene Set 0.001326 15 0.01003 60 Genes in module_133 www.broad.mit.e...
Broad module_37 View Gene Set 0.00148 412 0.01087 61 Genes in module_37 www.broad.mit.e...
Broad module_419 View Gene Set 0.001485 34 0.01087 61 Genes in module_419 www.broad.mit.e...
Broad module_121 View Gene Set 0.001528 98 0.01101 63 Genes in module_121 www.broad.mit.e...
Broad module_567 View Gene Set 0.001625 90 0.01153 64 Genes in module_567 www.broad.mit.e...
Broad module_19 View Gene Set 0.001819 306 0.0127 65 Genes in module_19 www.broad.mit.e...
Broad module_143 View Gene Set 0.001972 14 0.01357 66 Genes in module_143 www.broad.mit.e...
Broad module_160 View Gene Set 0.00201 15 0.01362 67 Genes in module_160 www.broad.mit.e...
Broad module_179 View Gene Set 0.002055 404 0.01372 68 Genes in module_179 www.broad.mit.e...
Broad module_456 View Gene Set 0.002128 108 0.014 69 Genes in module_456 www.broad.mit.e...
Broad module_115 View Gene Set 0.002402 27 0.01558 70 Genes in module_115 www.broad.mit.e...
Broad module_222 View Gene Set 0.002492 22 0.01593 71 Genes in module_222 www.broad.mit.e...
Broad module_86 View Gene Set 0.002629 43 0.01658 72 Genes in module_86 www.broad.mit.e...
Broad module_317 View Gene Set 0.002785 377 0.01732 73 Genes in module_317 www.broad.mit.e...
Broad module_97 View Gene Set 0.002996 91 0.01821 74 Genes in module_97 www.broad.mit.e...
Broad module_299 View Gene Set 0.003009 33 0.01821 74 Genes in module_299 www.broad.mit.e...
Broad module_255 View Gene Set 0.003091 386 0.01846 76 Genes in module_255 www.broad.mit.e...
Broad module_82 View Gene Set 0.003457 24 0.02038 77 Genes in module_82 www.broad.mit.e...
Broad module_378 View Gene Set 0.003683 372 0.02144 78 Genes in module_378 www.broad.mit.e...
Broad module_4 View Gene Set 0.003911 21 0.02165 79 Genes in module_4 www.broad.mit.e...
Broad module_235 View Gene Set 0.003911 81 0.02165 79 Genes in module_235 www.broad.mit.e...
Broad module_239 View Gene Set 0.003997 112 0.02165 79 Genes in module_239 www.broad.mit.e...
Broad module_332 View Gene Set 0.003886 35 0.02165 79 Genes in module_332 www.broad.mit.e...
Broad module_358 View Gene Set 0.003833 72 0.02165 79 Genes in module_358 www.broad.mit.e...
Broad module_414 View Gene Set 0.004006 17 0.02165 79 Genes in module_414 www.broad.mit.e...
Broad module_459 View Gene Set 0.004683 370 0.02501 85 Genes in module_459 www.broad.mit.e...
Broad module_69 View Gene Set 0.004909 458 0.02592 86 Genes in module_69 www.broad.mit.e...
Broad module_325 View Gene Set 0.004982 46 0.026 87 Genes in module_325 www.broad.mit.e...
Broad module_403 View Gene Set 0.005216 44 0.02691 88 Genes in module_403 www.broad.mit.e...
Broad module_308 View Gene Set 0.006174 66 0.0315 89 Genes in module_308 www.broad.mit.e...
Broad module_407 View Gene Set 0.00629 13 0.03173 90 Genes in module_407 www.broad.mit.e...
Broad module_397 View Gene Set 0.007307 114 0.03645 91 Genes in module_397 www.broad.mit.e...
Broad module_62 View Gene Set 0.008075 88 0.03953 92 Genes in module_62 www.broad.mit.e...
Broad module_349 View Gene Set 0.008097 17 0.03953 92 Genes in module_349 www.broad.mit.e...
Broad module_168 View Gene Set 0.008633 22 0.04169 94 Genes in module_168 www.broad.mit.e...
Broad module_388 View Gene Set 0.008775 17 0.04193 95 Genes in module_388 www.broad.mit.e...
Broad module_31 View Gene Set 0.009079 7 0.04293 96 Genes in module_31 www.broad.mit.e...
Broad module_278 View Gene Set 0.009298 34 0.04352 97 Genes in module_278 www.broad.mit.e...
Broad module_312 View Gene Set 0.009504 45 0.04358 98 Genes in module_312 www.broad.mit.e...
Broad module_444 View Gene Set 0.009418 18 0.04358 98 Genes in module_444 www.broad.mit.e...
Broad module_223 View Gene Set 0.009703 140 0.04364 100 Genes in module_223 www.broad.mit.e...
Broad module_538 View Gene Set 0.009709 8 0.04364 100 Genes in module_538 www.broad.mit.e...
Broad module_21 View Gene Set 0.01004 10 0.04469 102 Genes in module_21 www.broad.mit.e...
Broad module_56 View Gene Set 0.01116 12 0.04921 103 Genes in module_56 www.broad.mit.e...
Broad module_173 View Gene Set 0.01136 15 0.0495 104 Genes in module_173 www.broad.mit.e...
Broad module_323 View Gene Set 0.01145 54 0.0495 104 Genes in module_323 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 1.597e-13 1197 1.318e-10 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 6.033e-12 1623 2.488e-09 2 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 1.992e-09 253 5.479e-07 3 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 7.124e-08 801 1.232e-05 4 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 7.47e-08 304 1.232e-05 4 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 1.244e-07 159 1.711e-05 6 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 4.673e-07 197 4.829e-05 7 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 4.683e-07 101 4.829e-05 7 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 4.896e-06 117 0.0004488 9 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 5.555e-06 148 0.0004583 10 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad REGULATION_OF_CELL_CYCLE View Gene Set 6.784e-06 176 0.0005088 11 Genes annotated by the GO term GO:0051726. Any process that modulates the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 1.483e-05 74 0.00102 12 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad BIOPOLYMER_CATABOLIC_PROCESS View Gene Set 1.635e-05 115 0.001037 13 Genes annotated by the GO term GO:0043285. The chemical reactions and pathways resulting in the breakdown of biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 2.056e-05 458 0.001212 14 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 2.309e-05 187 0.00127 15 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad RESPONSE_TO_STRESS View Gene Set 2.475e-05 495 0.001276 16 Genes annotated by the GO term GO:0006950. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually but not necessarily exogenous (e.g. temperature humidity ionizing radiation). www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 2.909e-05 147 0.001412 17 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 3.235e-05 167 0.001483 18 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 3.437e-05 123 0.001492 19 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad BASE_EXCISION_REPAIR View Gene Set 4.547e-05 16 0.001876 20 Genes annotated by the GO term GO:0006284. In base excision repair an altered base is removed by a DNA glycosylase enzyme followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_CATABOLIC_PROCESS View Gene Set 6.964e-05 103 0.002716 21 Genes annotated by the GO term GO:0044265. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 7.243e-05 738 0.002716 21 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad MACROMOLECULE_CATABOLIC_PROCESS View Gene Set 8.592e-05 135 0.002969 23 Genes annotated by the GO term GO:0009057. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 8.637e-05 73 0.002969 23 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad PROTEIN_CATABOLIC_PROCESS View Gene Set 0.0001025 68 0.003381 25 Genes annotated by the GO term GO:0030163. The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native active configuration with or without the hydrolysis of peptide bonds. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 0.0001067 660 0.003387 26 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0001259 601 0.003848 27 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad CELLULAR_PROTEIN_CATABOLIC_PROCESS View Gene Set 0.000135 58 0.003978 28 Genes annotated by the GO term GO:0044257. The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 0.0001982 767 0.005638 29 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE View Gene Set 0.0002391 72 0.006576 30 Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 0.0002861 625 0.007375 31 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad CATABOLIC_PROCESS View Gene Set 0.0002777 221 0.007375 31 Genes annotated by the GO term GO:0009056. The chemical reactions and pathways resulting in the breakdown of substances including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism. www.broad.mit.e...
Broad PROTEIN_METABOLIC_PROCESS View Gene Set 0.0002952 1198 0.007381 33 Genes annotated by the GO term GO:0019538. The chemical reactions and pathways involving a specific protein rather than of proteins in general. Includes protein modification. www.broad.mit.e...
Broad CELLULAR_CATABOLIC_PROCESS View Gene Set 0.0003384 209 0.00821 34 Genes annotated by the GO term GO:0044248. The chemical reactions and pathways resulting in the breakdown of substances carried out by individual cells. www.broad.mit.e...
Broad INTERPHASE View Gene Set 0.0003614 68 0.008519 35 Genes annotated by the GO term GO:0051325. Progression through interphase the stage of cell cycle between successive rounds of chromosome segregation. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 0.0004107 623 0.009158 36 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS View Gene Set 0.0004061 1085 0.009158 36 Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification. www.broad.mit.e...
Broad ANTI_APOPTOSIS View Gene Set 0.0004389 115 0.009528 38 Genes annotated by the GO term GO:0006916. A process which directly inhibits any of the steps required for cell death by apoptosis. www.broad.mit.e...
Broad DNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION View Gene Set 0.0004571 34 0.00967 39 Genes annotated by the GO term GO:0042770. A cascade of processes induced by the detection of DNA damage within a cell. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 0.0005382 779 0.0111 40 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 0.0005706 555 0.01148 41 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_METABOLIC_PROCESS View Gene Set 0.0005995 1099 0.01178 42 Genes annotated by the GO term GO:0044260. The chemical reactions and pathways involving macromolecules large molecules including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.0006943 629 0.01332 43 Genes annotated by the GO term GO:0048523. Any process that stops prevents or reduces the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 0.0007544 659 0.01414 44 Genes annotated by the GO term GO:0048519. Any process that stops prevents or reduces the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_APOPTOSIS View Gene Set 0.0008626 147 0.01581 45 Genes annotated by the GO term GO:0043066. Any process that stops prevents or reduces the frequency rate or extent of cell death by apoptosis. www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY View Gene Set 0.0009124 59 0.01602 46 Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_PROGRAMMED_CELL_DEATH View Gene Set 0.0009009 148 0.01602 46 Genes annotated by the GO term GO:0043069. Any process that stops prevents or reduces the frequency rate or extent of programmed cell death cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad INTERPHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 0.001185 62 0.02036 48 Genes annotated by the GO term GO:0051329. Progression through interphase the stage of cell cycle between successive rounds of mitosis. Canonically interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 0.001554 271 0.02364 49 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS View Gene Set 0.001598 53 0.02364 49 Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. www.broad.mit.e...
Broad AMINO_ACID_METABOLIC_PROCESS View Gene Set 0.001511 75 0.02364 49 Genes annotated by the GO term GO:0006520. The chemical reactions and pathways involving amino acids organic acids containing one or more amino substituents. www.broad.mit.e...
Broad PROTEOLYSIS View Gene Set 0.001481 187 0.02364 49 Genes annotated by the GO term GO:0006508. The hydrolysis of a peptide bond or bonds within a protein. www.broad.mit.e...
Broad DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.001482 22 0.02364 49 Genes annotated by the GO term GO:0006302. The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.0016 14 0.02364 49 Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis. www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION View Gene Set 0.001604 55 0.02364 49 Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.00152 449 0.02364 49 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad ESTABLISHMENT_OF_CELLULAR_LOCALIZATION View Gene Set 0.001682 342 0.02434 57 Genes annotated by the GO term GO:0051649. The directed movement of a substance or cellular entity such as a protein complex or organelle to a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.001983 115 0.02777 58 Genes annotated by the GO term GO:0045893. Any process that activates or increases the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad MITOSIS View Gene Set 0.001986 81 0.02777 58 Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.002029 457 0.0279 60 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.00222 452 0.03003 61 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad CHROMATIN_ASSEMBLY_OR_DISASSEMBLY View Gene Set 0.002266 26 0.03015 62 Genes annotated by the GO term GO:0006333. The formation or destruction of chromatin structures. www.broad.mit.e...
Broad S_PHASE View Gene Set 0.002382 14 0.03083 63 Genes annotated by the GO term GO:0051320. Progression through S phase the part of the cell cycle during which DNA synthesis takes place. www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE View Gene Set 0.002392 83 0.03083 63 Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place. www.broad.mit.e...
Broad COENZYME_METABOLIC_PROCESS View Gene Set 0.002496 37 0.0312 65 Genes annotated by the GO term GO:0006732. The chemical reactions and pathways involving coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.002495 117 0.0312 65 Genes annotated by the GO term GO:0051254. Any process that activates or increases the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.002647 285 0.03259 67 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELL_CYCLE View Gene Set 0.00286 78 0.0334 68 Genes annotated by the GO term GO:0045786. Any process that stops prevents or reduces the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT View Gene Set 0.002866 23 0.0334 68 Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure. www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075 View Gene Set 0.002806 47 0.0334 68 Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage. www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.002874 9 0.0334 68 Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle. www.broad.mit.e...
Broad MACROMOLECULE_LOCALIZATION View Gene Set 0.003128 228 0.03584 72 Genes annotated by the GO term GO:0033036. The processes by which a macromolecule is transported to or maintained in a specific location. www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION View Gene Set 0.003187 31 0.03602 73 Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets. www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS View Gene Set 0.003708 70 0.04134 74 Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 0.004044 288 0.04448 75 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad DNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR View Gene Set 0.004102 12 0.04453 76 Genes annotated by the GO term GO:0030330. A cascade of processes induced by the cell cycle regulator phosphoprotein p53 or an equivalent protein in response to the detection of DNA damage. www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS View Gene Set 0.004397 27 0.04711 77 Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions. www.broad.mit.e...
Broad PROGRAMMED_CELL_DEATH View Gene Set 0.004713 424 0.04881 78 Genes annotated by the GO term GO:0012501. Cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad DNA_DAMAGE_CHECKPOINT View Gene Set 0.004733 20 0.04881 78 Genes annotated by the GO term GO:0000077. A signal transduction pathway induced by DNA damage that blocks cell cycle progression (in G1 G2 or metaphase) or slows the rate at which S phase proceeds. www.broad.mit.e...
Broad APOPTOSIS_GO View Gene Set 0.004656 423 0.04881 78 Genes annotated by the GO term GO:0006915. A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 4.382e-23 1353 1.021e-20 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad ORGANELLE_PART View Gene Set 3.073e-20 1149 2.387e-18 2 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 2.493e-20 1144 2.387e-18 2 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 1.426e-18 543 8.305e-17 4 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad CYTOPLASM View Gene Set 1.518e-15 2054 7.074e-14 5 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 1.237e-12 335 4.803e-11 6 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 1.613e-12 1350 5.369e-11 7 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 7.73e-12 613 2.001e-10 8 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 7.73e-12 613 2.001e-10 8 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 2.386e-11 434 5.054e-10 10 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 2.386e-11 434 5.054e-10 10 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 2.539e-10 914 4.929e-09 12 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 1.281e-09 365 2.295e-08 13 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 2.197e-07 122 3.656e-06 14 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 4.523e-07 799 7.026e-06 15 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 8.881e-07 129 1.293e-05 16 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 4.125e-06 116 5.654e-05 17 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 1.18e-05 266 0.0001527 18 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 1.527e-05 95 0.0001872 19 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad ENVELOPE View Gene Set 5.28e-05 165 0.0005858 20 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 5.28e-05 165 0.0005858 20 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 8.846e-05 71 0.0009368 22 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.0001253 20 0.001269 23 Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs. www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 0.0001571 32 0.001525 24 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 0.0003152 53 0.0029 25 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 0.0003236 202 0.0029 25 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad CHROMATIN View Gene Set 0.0003898 35 0.003364 27 Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome. www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 0.0004073 140 0.003389 28 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad NUCLEAR_PORE View Gene Set 0.0004271 29 0.003431 29 Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 0.0004551 48 0.003535 30 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 0.0007494 290 0.005633 31 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad CYTOSKELETON View Gene Set 0.000818 359 0.005636 32 Genes annotated by the GO term GO:0005856. Any of the various filamentous elements that form the internal framework of cells and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments microfilaments microtubules the microtrabecular lattice and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions including cellular movement cell division endocytosis and movement of organelles. www.broad.mit.e...
Broad MITOCHONDRIAL_MATRIX View Gene Set 0.0008224 46 0.005636 32 Genes annotated by the GO term GO:0005759. The gel-like material with considerable fine structure that lies in the matrix space or lumen of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and in some organisms the enzymes concerned with fatty-acid oxidation. www.broad.mit.e...
Broad MITOCHONDRIAL_LUMEN View Gene Set 0.0008224 46 0.005636 32 Genes annotated by the GO term GO:0031980. The volume enclosed by the mitochondrial inner membrane. www.broad.mit.e...
Broad ENDOSOME View Gene Set 0.0009798 64 0.006522 35 Genes annotated by the GO term GO:0005768. A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 0.001164 213 0.007532 36 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad PROTON_TRANSPORTING_TWO_SECTOR_ATPASE_COMPLEX View Gene Set 0.001247 15 0.007855 37 Genes annotated by the GO term GO:0016469. A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0 V0 or A0) that carries out proton transport and a cytoplasmic compartment sector (F1 V1 or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient whereas F-type ATPases also known as ATP synthases normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type A-type ATPases have been found in archaea and are closely related to eukaryotic V-type ATPases but are reversible. www.broad.mit.e...
Broad PORE_COMPLEX View Gene Set 0.001299 34 0.007965 38 Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids. www.broad.mit.e...
Broad CYTOSKELETAL_PART View Gene Set 0.001358 231 0.00811 39 Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART View Gene Set 0.001635 40 0.009521 40 Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells. www.broad.mit.e...
Broad CYTOSOL View Gene Set 0.002422 203 0.01376 41 Genes annotated by the GO term GO:0005829. That part of the cytoplasm that does not contain membranous or particulate subcellular components. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 0.002936 44 0.01629 42 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad PERINUCLEAR_REGION_OF_CYTOPLASM View Gene Set 0.003216 55 0.01743 43 Genes annotated by the GO term GO:0048471. Cytoplasm situated near or occurring around the nucleus. www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION View Gene Set 0.003691 31 0.01954 44 Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM View Gene Set 0.004031 282 0.02087 45 Genes annotated by the GO term GO:0005783. The irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. The ER takes two forms rough (or granular) with ribosomes adhering to the outer surface and smooth (with no ribosomes attached). www.broad.mit.e...
Broad KINETOCHORE View Gene Set 0.004186 25 0.0212 46 Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules. www.broad.mit.e...
Broad SPINDLE View Gene Set 0.004287 37 0.02125 47 Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 0.004944 146 0.02304 48 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.004919 9 0.02304 48 Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART View Gene Set 0.004796 33 0.02304 48 Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad RIBOSOME View Gene Set 0.005432 39 0.02482 51 Genes annotated by the GO term GO:0005840. An intracellular organelle about 200 A in diameter consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits one large and one small each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients expressed in Svedberg units (symbol: S). Hence the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes eukaryotes mitochondria and chloroplasts have characteristically distinct ribosomal proteins. www.broad.mit.e...
Broad CONDENSED_NUCLEAR_CHROMOSOME View Gene Set 0.006376 17 0.02857 52 Genes annotated by the GO term GO:0000794. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus. www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME View Gene Set 0.009097 22 0.03776 53 Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle. www.broad.mit.e...
Broad CHROMATIN_REMODELING_COMPLEX View Gene Set 0.008828 17 0.03776 53 Genes annotated by the GO term GO:0016585. Any complex that mediates dynamic changes in eukaryotic chromatin. www.broad.mit.e...
Broad PROTEASOME_COMPLEX View Gene Set 0.009265 23 0.03776 53 Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. www.broad.mit.e...
Broad TRANSPORT_VESICLE View Gene Set 0.008943 29 0.03776 53 Genes annotated by the GO term GO:0030133. Any of the vesicles of the constitutive secretory pathway which carry cargo from the endoplasmic reticulum to the Golgi between Golgi cisternae and to destinations within or outside the cell. www.broad.mit.e...
Broad FOCAL_ADHESION View Gene Set 0.0094 11 0.03776 53 Genes annotated by the GO term GO:0005925. Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments. www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME View Gene Set 0.009097 22 0.03776 53 Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.01074 16 0.04104 59 Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX View Gene Set 0.01074 16 0.04104 59 Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.01074 16 0.04104 59 Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad NUCLEAR_REPLICATION_FORK View Gene Set 0.01261 10 0.0474 62 Genes annotated by the GO term GO:0043596. The Y-shaped region of a nuclear replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOTIDYLTRANSFERASE_ACTIVITY View Gene Set 2.264e-06 47 0.0008964 1 Genes annotated by the GO term GO:0016779. Catalysis of the transfer of a nucleotidyl group to a reactant. www.broad.mit.e...
Broad RNA_POLYMERASE_ACTIVITY View Gene Set 2.558e-05 16 0.005065 2 Genes annotated by the GO term GO:0034062. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template. www.broad.mit.e...
Broad LIGASE_ACTIVITY View Gene Set 6.491e-05 97 0.008569 3 Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. www.broad.mit.e...
Broad DNA_POLYMERASE_ACTIVITY View Gene Set 0.0001228 18 0.01216 4 Genes annotated by the GO term GO:0034061. Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a nucleic acid template and primer. www.broad.mit.e...
Broad GTP_BINDING View Gene Set 0.0002702 46 0.01783 5 Genes annotated by the GO term GO:0005525. Interacting selectively with GTP guanosine triphosphate. www.broad.mit.e...
Broad GUANYL_NUCLEOTIDE_BINDING View Gene Set 0.0002592 47 0.01783 5 Genes annotated by the GO term GO:0019001. Interacting selectively with guanyl nucleotides any compound consisting of guanosine esterified with (ortho)phosphate. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 4.797e-25 421 1.203e-21 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 8.326e-20 106 1.044e-16 2 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 2.872e-17 208 2.4e-14 3 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 3.174e-14 391 1.989e-11 4 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 11042152 View Gene Set 1.122e-13 315 5.623e-11 5 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. www.ncbi.nlm.ni...
PMID 10810093 View Gene Set 1.706e-13 151 7.128e-11 6 Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 2.847e-12 773 9.801e-10 7 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 3.127e-12 504 9.801e-10 7 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 4.002e-11 182 1.115e-08 9 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 9.29e-11 108 2.329e-08 10 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 20085707 View Gene Set 4.313e-10 42 9.83e-08 11 Aire's partners in the molecular control of immunological tolerance. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 5.127e-10 210 1.071e-07 12 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 16130169 View Gene Set 3.866e-09 74 7.455e-07 13 Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 9.526e-08 74 1.706e-05 14 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 12665801 View Gene Set 1.561e-07 261 2.609e-05 15 Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 1.879e-07 51 2.944e-05 16 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 2.042e-07 58 3.012e-05 17 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 16341674 View Gene Set 3.333e-07 392 4.642e-05 18 Transcriptome analysis of human gastric cancer. www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 5.143e-07 212 6.786e-05 19 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 6.328e-07 693 7.932e-05 20 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 1.25e-06 68 0.0001493 21 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 1.841e-06 242 0.0002006 22 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 9110174 View Gene Set 1.79e-06 528 0.0002006 22 Large-scale concatenation cDNA sequencing. www.ncbi.nlm.ni...
PMID 11080476 View Gene Set 3.114e-06 87 0.0002892 24 Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones. www.ncbi.nlm.ni...
PMID 14667819 View Gene Set 2.949e-06 112 0.0002892 24 Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. www.ncbi.nlm.ni...
PMID 15231748 View Gene Set 3.024e-06 519 0.0002892 24 Functional proteomics mapping of a human signaling pathway. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 3.071e-06 317 0.0002892 24 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 19027726 View Gene Set 3.276e-06 73 0.0002934 28 The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. www.ncbi.nlm.ni...
PMID 8619474 View Gene Set 4.579e-06 534 0.0003958 29 A "double adaptor" method for improved shotgun library construction. www.ncbi.nlm.ni...
PMID 19116388 View Gene Set 5.385e-06 37 0.00045 30 A field synopsis on low-penetrance variants in DNA repair genes and cancer susceptibility. www.ncbi.nlm.ni...
PMID 17466952 View Gene Set 6.921e-06 11 0.0005597 31 Role of IKK and ERK pathways in intrinsic inflammation of cystic fibrosis airways. www.ncbi.nlm.ni...
PMID 16712791 View Gene Set 8.899e-06 342 0.0006972 32 Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. www.ncbi.nlm.ni...
PMID 11689053 View Gene Set 1.229e-05 70 0.0009223 33 Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA. www.ncbi.nlm.ni...
PMID 9566873 View Gene Set 1.251e-05 74 0.0009223 33 Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter. www.ncbi.nlm.ni...
PMID 14627618 View Gene Set 1.381e-05 22 0.0009894 35 Smooth muscle contraction and relaxation. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 2.072e-05 31 0.001443 36 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 14657027 View Gene Set 3.109e-05 74 0.002051 37 Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter. www.ncbi.nlm.ni...
PMID 20522537 View Gene Set 3.03e-05 73 0.002051 37 Variation within DNA repair pathway genes and risk of multiple sclerosis. www.ncbi.nlm.ni...
PMID 9439656 View Gene Set 3.617e-05 55 0.002325 39 The human histone gene cluster at the D6S105 locus. www.ncbi.nlm.ni...
PMID 12228227 View Gene Set 4.396e-05 30 0.002716 40 Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1. www.ncbi.nlm.ni...
PMID 18063578 View Gene Set 4.442e-05 31 0.002716 40 The layered structure of human mitochondrial DNA nucleoids. www.ncbi.nlm.ni...
PMID 11551941 View Gene Set 4.971e-05 26 0.002967 42 The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 18950845 View Gene Set 5.468e-05 88 0.003188 43 Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 5.75e-05 522 0.003276 44 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 6.593e-05 102 0.003673 45 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 7.303e-05 22 0.00398 46 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...
PMID 15345747 View Gene Set 8.403e-05 148 0.004389 47 Phosphoproteomic analysis of the developing mouse brain. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 8.369e-05 22 0.004389 47 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 11279123 View Gene Set 8.842e-05 31 0.004465 49 The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 8662825 View Gene Set 8.905e-05 10 0.004465 49 Cyclin-dependent kinases are inactivated by a combination of p21 and Thr-14/Tyr-15 phosphorylation after UV-induced DNA damage. www.ncbi.nlm.ni...
PMID 15782174 View Gene Set 0.0001071 31 0.005265 51 Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. www.ncbi.nlm.ni...
PMID 12391170 View Gene Set 0.0001592 18 0.007627 52 Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. www.ncbi.nlm.ni...
PMID 15761153 View Gene Set 0.0001623 211 0.007627 52 High-throughput mapping of a dynamic signaling network in mammalian cells. www.ncbi.nlm.ni...
PMID 19596235 View Gene Set 0.0001643 85 0.007627 52 Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 0.0001918 34 0.008673 55 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 15383276 View Gene Set 0.0001937 67 0.008673 55 A protein interaction network links GIT1 an enhancer of huntingtin aggregation to Huntington's disease. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 0.0002055 23 0.00904 57 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 0.0002179 58 0.00942 58 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...
PMID 12620389 View Gene Set 0.0002245 23 0.00954 59 Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis. www.ncbi.nlm.ni...
PMID 7273846 View Gene Set 0.000246 12 0.01028 60 The glucose-lactic acid cycle and gluconeogenesis. www.ncbi.nlm.ni...
PMID 19536092 View Gene Set 0.000257 55 0.01056 61 Explorative study to identify novel candidate genes related to oxaliplatin efficacy and toxicity using a DNA repair array. www.ncbi.nlm.ni...
PMID 15489336 View Gene Set 0.0002786 722 0.01126 62 From ORFeome to biology: a functional genomics pipeline. www.ncbi.nlm.ni...
PMID 11013263 View Gene Set 0.0003111 16 0.01238 63 A novel nuclear receptor corepressor complex N-CoR contains components of the mammalian SWI/SNF complex and the corepressor KAP-1. www.ncbi.nlm.ni...
PMID 16381901 View Gene Set 0.0003272 720 0.0125 64 The LIFEdb database in 2006. www.ncbi.nlm.ni...
PMID 17148452 View Gene Set 0.0003292 87 0.0125 64 Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2. www.ncbi.nlm.ni...
PMID 8084338 View Gene Set 0.0003213 21 0.0125 64 HIV-1 gp41 binding proteins and antibodies to gp41 could inhibit enhancement of human Raji cell MHC class I and II expression by gp41. www.ncbi.nlm.ni...
PMID 15644312 View Gene Set 0.000337 10 0.01261 67 Dissection of the mitochondrial import and assembly pathway for human Tom40. www.ncbi.nlm.ni...
PMID 19237606 View Gene Set 0.0003558 84 0.01312 68 Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk. www.ncbi.nlm.ni...
PMID 15694340 View Gene Set 0.0003752 15 0.01327 69 Differential targeting of prosurvival Bcl-2 proteins by their BH3-only ligands allows complementary apoptotic function. www.ncbi.nlm.ni...
PMID 17220478 View Gene Set 0.0003656 63 0.01327 69 Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells. www.ncbi.nlm.ni...
PMID 17289661 View Gene Set 0.0003757 35 0.01327 69 Molecular composition of IMP1 ribonucleoprotein granules. www.ncbi.nlm.ni...
PMID 18276110 View Gene Set 0.0004117 16 0.01433 72 E3 ubiquitin ligase SIAH1 mediates ubiquitination and degradation of TRB3. www.ncbi.nlm.ni...
PMID 11310559 View Gene Set 0.0004297 17 0.01459 73 Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha. www.ncbi.nlm.ni...
PMID 12408966 View Gene Set 0.0004307 76 0.01459 73 The human and mouse replication-dependent histone genes. www.ncbi.nlm.ni...
PMID 15130578 View Gene Set 0.000438 22 0.01464 75 Why do cells need an assembly machine for RNA-protein complexes? www.ncbi.nlm.ni...
PMID 11473323 View Gene Set 0.0005124 13 0.0169 76 RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes. www.ncbi.nlm.ni...
PMID 16236267 View Gene Set 0.0005247 77 0.01708 77 Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress. www.ncbi.nlm.ni...
PMID 12614612 View Gene Set 0.0005396 19 0.01734 78 Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. www.ncbi.nlm.ni...
PMID 15226314 View Gene Set 0.0005603 20 0.01756 79 Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. www.ncbi.nlm.ni...
PMID 16697956 View Gene Set 0.0005577 13 0.01756 79 Mitochondria primed by death signals determine cellular addiction to antiapoptotic BCL-2 family members. www.ncbi.nlm.ni...
PMID 11721045 View Gene Set 0.0005863 10 0.01796 81 Crystal structure of Arp2/3 complex. www.ncbi.nlm.ni...
PMID 18830263 View Gene Set 0.0005876 36 0.01796 81 Polymorphisms in DNA repair and one-carbon metabolism genes and overall survival in diffuse large B-cell lymphoma and follicular lymphoma. www.ncbi.nlm.ni...
PMID 17041588 View Gene Set 0.0006173 19 0.01865 83 CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 0.0006945 24 0.02073 84 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 12754519 View Gene Set 0.0007537 71 0.022 85 Identification and quantification of N-linked glycoproteins using hydrazide chemistry stable isotope labeling and mass spectrometry. www.ncbi.nlm.ni...
PMID 9121429 View Gene Set 0.0007547 39 0.022 85 The human immunodeficiency virus transactivator Tat interacts with the RNA polymerase II holoenzyme. www.ncbi.nlm.ni...
PMID 10531003 View Gene Set 0.0007815 15 0.02252 87 Newly assembled snRNPs associate with coiled bodies before speckles suggesting a nuclear snRNP maturation pathway. www.ncbi.nlm.ni...
PMID 12427289 View Gene Set 0.0008176 20 0.02319 88 HIV-1 gp120 modulates the immunological function and expression of accessory and co-stimulatory molecules of monocyte-derived dendritic cells. www.ncbi.nlm.ni...
PMID 8401585 View Gene Set 0.0008234 15 0.02319 88 Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library. www.ncbi.nlm.ni...
PMID 9878398 View Gene Set 0.0008645 13 0.02408 90 Macromolecular assemblage of aminoacyl-tRNA synthetases: identification of protein-protein interactions and characterization of a core protein. www.ncbi.nlm.ni...
PMID 12646563 View Gene Set 0.000905 20 0.02493 91 Rrn3 becomes inactivated in the process of ribosomal DNA transcription. www.ncbi.nlm.ni...
PMID 12045100 View Gene Set 0.0009212 18 0.0251 92 DNA replication in eukaryotic cells. www.ncbi.nlm.ni...
PMID 11829477 View Gene Set 0.0009477 13 0.02549 93 Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex. www.ncbi.nlm.ni...
PMID 1574589 View Gene Set 0.0009559 11 0.02549 93 De novo purine nucleotide biosynthesis. www.ncbi.nlm.ni...
PMID 7690138 View Gene Set 0.0009871 10 0.02605 95 The Tat protein of human immunodeficiency virus type 1 a growth factor for AIDS Kaposi sarcoma and cytokine-activated vascular cells induces adhesion of the same cell types by using integrin receptors recognizing the RGD amino acid sequence. www.ncbi.nlm.ni...
PMID 16083285 View Gene Set 0.001008 59 0.02606 96 Global phosphoproteome of HT-29 human colon adenocarcinoma cells. www.ncbi.nlm.ni...
PMID 8997639 View Gene Set 0.001003 17 0.02606 96 The cleavage of host cell proteins by HIV-1 protease. www.ncbi.nlm.ni...
PMID 12963728 View Gene Set 0.001023 21 0.02616 98 Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex. www.ncbi.nlm.ni...
PMID 11076961 View Gene Set 0.001081 14 0.02711 99 Characterization of vertebrate cohesin complexes and their regulation in prophase. www.ncbi.nlm.ni...
PMID 18814951 View Gene Set 0.001079 10 0.02711 99 Gene-expression profiles of peripheral blood mononuclear cell subpopulations in acute graft-vs-host disease following cord blood transplantation. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 0.001112 748 0.02759 101 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 1286667 View Gene Set 0.001154 45 0.02836 102 Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes. www.ncbi.nlm.ni...
PMID 9891079 View Gene Set 0.00118 15 0.02872 103 Cyclin E associates with BAF155 and BRG1 components of the mammalian SWI-SNF complex and alters the ability of BRG1 to induce growth arrest. www.ncbi.nlm.ni...
PMID 11095689 View Gene Set 0.001254 17 0.02992 104 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. www.ncbi.nlm.ni...
PMID 11714285 View Gene Set 0.001384 11 0.02992 104 The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function. www.ncbi.nlm.ni...
PMID 12388589 View Gene Set 0.001338 17 0.02992 104 A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. www.ncbi.nlm.ni...
PMID 15862967 View Gene Set 0.001373 50 0.02992 104 Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin. www.ncbi.nlm.ni...
PMID 16055448 View Gene Set 0.001384 11 0.02992 104 The C-terminal appended domain of human cytosolic leucyl-tRNA synthetase is indispensable in its interaction with arginyl-tRNA synthetase in the multi-tRNA synthetase complex. www.ncbi.nlm.ni...
PMID 16916647 View Gene Set 0.00128 76 0.02992 104 Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. www.ncbi.nlm.ni...
PMID 18270339 View Gene Set 0.001278 57 0.02992 104 Comprehensive analysis of DNA repair gene variants and risk of meningioma. www.ncbi.nlm.ni...
PMID 19584272 View Gene Set 0.001274 11 0.02992 104 Modification of ovarian cancer risk by BRCA1/2-interacting genes in a multicenter cohort of BRCA1/2 mutation carriers. www.ncbi.nlm.ni...
PMID 8052601 View Gene Set 0.001384 11 0.02992 104 Human cytoplasmic isoleucyl-tRNA synthetase: selective divergence of the anticodon-binding domain and acquisition of a new structural unit. www.ncbi.nlm.ni...
PMID 8078941 View Gene Set 0.001384 11 0.02992 104 Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer. www.ncbi.nlm.ni...
PMID 8188258 View Gene Set 0.001384 11 0.02992 104 The human EPRS locus (formerly the QARS locus): a gene encoding a class I and a class II aminoacyl-tRNA synthetase. www.ncbi.nlm.ni...
PMID 8449960 View Gene Set 0.001384 11 0.02992 104 Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix. www.ncbi.nlm.ni...
PMID 9278442 View Gene Set 0.001384 11 0.02992 104 Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant. www.ncbi.nlm.ni...
PMID 10608806 View Gene Set 0.001419 25 0.03016 117 Substrate specificities and identification of putative substrates of ATM kinase family members. www.ncbi.nlm.ni...
PMID 9545232 View Gene Set 0.001419 10 0.03016 117 ER-60 a chaperone with thiol-dependent reductase activity involved in MHC class I assembly. www.ncbi.nlm.ni...
PMID 10601273 View Gene Set 0.001564 21 0.03268 119 Nuclear import of hepatic glucokinase depends upon glucokinase regulatory protein whereas export is due to a nuclear export signal sequence in glucokinase. www.ncbi.nlm.ni...
PMID 16051665 View Gene Set 0.001552 15 0.03268 119 Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes. www.ncbi.nlm.ni...
PMID 17203305 View Gene Set 0.001584 12 0.03282 121 Genetic variation in the base excision repair pathway and bladder cancer risk. www.ncbi.nlm.ni...
PMID 12221128 View Gene Set 0.001675 70 0.03442 122 Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex. www.ncbi.nlm.ni...
PMID 15456888 View Gene Set 0.001764 24 0.03596 123 The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo. www.ncbi.nlm.ni...
PMID 19270065 View Gene Set 0.001978 11 0.04 124 MRE11 complex links RECQ5 helicase to sites of DNA damage. www.ncbi.nlm.ni...
PMID 11279069 View Gene Set 0.002018 15 0.04047 125 Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. www.ncbi.nlm.ni...
PMID 17363900 View Gene Set 0.002162 14 0.04302 126 The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. www.ncbi.nlm.ni...
PMID 9311822 View Gene Set 0.002219 22 0.04379 127 A human primary T-lymphocyte-derived human immunodeficiency virus type 1 Tat-associated kinase phosphorylates the C-terminal domain of RNA polymerase II and induces CAK activity. www.ncbi.nlm.ni...
PMID 17601350 View Gene Set 0.002287 119 0.0448 128 A genetic association analysis of cognitive ability and cognitive ageing using 325 markers for 109 genes associated with oxidative stress or cognition. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 0.002478 37 0.04636 129 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 16713569 View Gene Set 0.002386 570 0.04636 129 A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. www.ncbi.nlm.ni...
PMID 1939271 View Gene Set 0.002464 39 0.04636 129 Abortive initiation is increased only for the weakest members of a set of down mutants of the adenovirus 2 major late promoter. www.ncbi.nlm.ni...
PMID 2449431 View Gene Set 0.002464 39 0.04636 129 ATP activates transcription initiation from promoters by RNA polymerase II in a reversible step prior to RNA synthesis. www.ncbi.nlm.ni...
PMID 8946909 View Gene Set 0.002464 39 0.04636 129 The general transcription factors of RNA polymerase II. www.ncbi.nlm.ni...
PMID 9405375 View Gene Set 0.002464 39 0.04636 129 Three transitions in the RNA polymerase II transcription complex during initiation. www.ncbi.nlm.ni...
PMID 12065586 View Gene Set 0.002502 14 0.04647 135 Identification and characterization of Gemin7 a novel component of the survival of motor neuron complex. www.ncbi.nlm.ni...
PMID 15747776 View Gene Set 0.002559 14 0.04648 136 Dose-dependent transcriptome changes by metal ores on a human acute lymphoblastic leukemia cell line. www.ncbi.nlm.ni...
PMID 16368544 View Gene Set 0.002531 13 0.04648 136 New insights into potential functions for the protein 4.1 superfamily of proteins in kidney epithelium. www.ncbi.nlm.ni...
PMID 19571811 View Gene Set 0.002551 15 0.04648 136 Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. www.ncbi.nlm.ni...
PMID 20453000 View Gene Set 0.002698 351 0.04866 139 A Large-scale genetic association study of esophageal adenocarcinoma risk. www.ncbi.nlm.ni...
PMID 17158748 View Gene Set 0.002754 13 0.04932 140 The histone variant mH2A1.1 interferes with transcription by down-regulating PARP-1 enzymatic activity. www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 2.211e-06 229 0.001625 1 RRM expasy.org/pros...
Null PS00678 View Gene Set 2.361e-05 168 0.008636 2 WD_REPEATS_1 expasy.org/pros...
Null PS50294 View Gene Set 3.525e-05 245 0.008636 2 WD_REPEATS_REGION expasy.org/pros...
Null PS50082 View Gene Set 0.0001402 233 0.02575 4 WD_REPEATS_2 expasy.org/pros...
Null PS50051 View Gene Set 0.0002733 8 0.04017 5 MCM_2 expasy.org/pros...
Null PS00061 View Gene Set 0.0003539 37 0.04335 6 ADH_SHORT expasy.org/pros...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.CDKN1A View Gene Set 8.621e-05 9 0.00764 1 Protein-protein-interaction for CDKN1A www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 0.0001213 44 0.00764 1 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 6.552e-05 45 0.00764 1 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.VHL View Gene Set 0.0006781 6 0.03204 4 Protein-protein-interaction for VHL www.ncbi.nlm.ni...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 2.172e-17 236 4.989e-14 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.165e-08 147 1.339e-05 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 1.344e-07 101 7.721e-05 3 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.245e-07 168 7.721e-05 3 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 8.135e-07 28 0.0003737 5 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.TOPORS View Gene Set 1.085e-05 27 0.003701 6 Protein-protein-interaction for TOPORS www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 1.289e-05 64 0.003701 6 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 1.235e-05 64 0.003701 6 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 1.895e-05 50 0.004837 9 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 2.221e-05 40 0.005101 10 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 4.019e-05 35 0.008392 11 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 4.587e-05 11 0.00878 12 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.SMARCC1 View Gene Set 0.000102 26 0.01803 13 Protein-protein-interaction for SMARCC1 www.ncbi.nlm.ni...
Null ppi.POLR3H View Gene Set 0.0001437 14 0.01834 14 Protein-protein-interaction for POLR3H www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 0.000139 12 0.01834 14 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.RFWD2 View Gene Set 0.000133 26 0.01834 14 Protein-protein-interaction for RFWD2 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 0.0001247 37 0.01834 14 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.USP42 View Gene Set 0.0001326 24 0.01834 14 Protein-protein-interaction for USP42 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 0.0001914 35 0.02314 19 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.WRN View Gene Set 0.0002528 14 0.02903 20 Protein-protein-interaction for WRN www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0002934 104 0.03209 21 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.NEK9 View Gene Set 0.0003389 9 0.03539 22 Protein-protein-interaction for NEK9 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 0.0003922 46 0.03604 23 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.GSTK1 View Gene Set 0.0003844 26 0.03604 23 Protein-protein-interaction for GSTK1 www.ncbi.nlm.ni...
Null ppi.RAE1 View Gene Set 0.0003622 19 0.03604 23 Protein-protein-interaction for RAE1 www.ncbi.nlm.ni...
Null ppi.TOM1L1 View Gene Set 0.0004422 7 0.03762 26 Protein-protein-interaction for TOM1L1 www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 0.000438 38 0.03762 26 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.ZNF638 View Gene Set 0.0004963 11 0.04072 28 Protein-protein-interaction for ZNF638 www.ncbi.nlm.ni...
Null ppi.MRE11A View Gene Set 0.0005215 13 0.04131 29 Protein-protein-interaction for MRE11A www.ncbi.nlm.ni...
Null ppi.NCOR1 View Gene Set 0.0005481 84 0.04196 30 Protein-protein-interaction for NCOR1 www.ncbi.nlm.ni...
Null ppi.CUL4A View Gene Set 0.0005801 19 0.04298 31 Protein-protein-interaction for CUL4A www.ncbi.nlm.ni...
Null ppi.DERL1 View Gene Set 0.0006402 10 0.04595 32 Protein-protein-interaction for DERL1 www.ncbi.nlm.ni...
Null ppi.LILRB1 View Gene Set 0.0007628 7 0.04971 33 Protein-protein-interaction for LILRB1 www.ncbi.nlm.ni...
Null ppi.FOXM1 View Gene Set 0.0007429 8 0.04971 33 Protein-protein-interaction for FOXM1 www.ncbi.nlm.ni...
Null ppi.GIYD2 View Gene Set 0.0007442 32 0.04971 33 Protein-protein-interaction for GIYD2 www.ncbi.nlm.ni...
Null ppi.EIF3F View Gene Set 0.0007792 22 0.04971 33 Protein-protein-interaction for EIF3F www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SFRS12 View Gene Set 4.221e-07 49 0.001002 1 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 7.217e-06 166 0.008566 2 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.LILRB1 View Gene Set 3.73e-05 7 0.02213 3 Protein-protein-interaction for LILRB1 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 3.352e-05 33 0.02213 3 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.GEMIN4 View Gene Set 4.978e-05 15 0.02364 5 Protein-protein-interaction for GEMIN4 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 0.0001027 76 0.04063 6 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.UPF2 View Gene Set 0.0001549 16 0.04096 7 Protein-protein-interaction for UPF2 www.ncbi.nlm.ni...
Null ppi.RNF11 View Gene Set 0.0001423 39 0.04096 7 Protein-protein-interaction for RNF11 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 0.0001553 11 0.04096 7 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 0.0002004 20 0.04758 10 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 3.016e-17 251 1.084e-13 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.165e-08 147 2.094e-05 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 1.344e-07 101 0.0001611 3 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 2.965e-07 50 0.0002664 4 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 4.773e-07 220 0.0003431 5 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 8.135e-07 28 0.0004873 6 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 4.462e-06 47 0.002291 7 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.TOPORS View Gene Set 1.085e-05 28 0.004872 8 Protein-protein-interaction for TOPORS www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 1.859e-05 66 0.007423 9 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.UPF2 View Gene Set 3.056e-05 19 0.01098 10 Protein-protein-interaction for UPF2 www.ncbi.nlm.ni...
Null ppi.SIP1 View Gene Set 3.424e-05 17 0.01119 11 Protein-protein-interaction for SIP1 www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 4.004e-05 72 0.01199 12 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 5.886e-05 39 0.01627 13 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 7.665e-05 12 0.01836 14 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.SMARCC1 View Gene Set 7.434e-05 27 0.01836 14 Protein-protein-interaction for SMARCC1 www.ncbi.nlm.ni...
Null ppi.POLR3H View Gene Set 9.88e-05 15 0.01879 16 Protein-protein-interaction for POLR3H www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 8.442e-05 116 0.01879 16 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 0.0001027 76 0.01879 16 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.0001042 55 0.01879 16 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 0.0001046 42 0.01879 16 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.RFWD2 View Gene Set 0.000133 26 0.02173 21 Protein-protein-interaction for RFWD2 www.ncbi.nlm.ni...
Null ppi.USP42 View Gene Set 0.0001326 24 0.02173 21 Protein-protein-interaction for USP42 www.ncbi.nlm.ni...
Null ppi.KIAA1377 View Gene Set 0.0001687 64 0.02635 23 Protein-protein-interaction for KIAA1377 www.ncbi.nlm.ni...
Null ppi.LILRB1 View Gene Set 0.00019 8 0.02751 24 Protein-protein-interaction for LILRB1 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 0.0001914 35 0.02751 24 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.XRCC5 View Gene Set 0.0002202 52 0.03044 26 Protein-protein-interaction for XRCC5 www.ncbi.nlm.ni...
Null ppi.PIAS4 View Gene Set 0.0002401 47 0.03195 27 Protein-protein-interaction for PIAS4 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 0.0002544 48 0.03265 28 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.CREBBP View Gene Set 0.0002992 34 0.03708 29 Protein-protein-interaction for CREBBP www.ncbi.nlm.ni...
Null ppi.CHAF1A View Gene Set 0.0003953 21 0.03807 30 Protein-protein-interaction for CHAF1A www.ncbi.nlm.ni...
Null ppi.CDK2 View Gene Set 0.0004343 15 0.03807 30 Protein-protein-interaction for CDK2 www.ncbi.nlm.ni...
Null ppi.CEBPA View Gene Set 0.0004295 9 0.03807 30 Protein-protein-interaction for CEBPA www.ncbi.nlm.ni...
Null ppi.FOXM1 View Gene Set 0.000417 9 0.03807 30 Protein-protein-interaction for FOXM1 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 0.0003987 15 0.03807 30 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 0.0003302 16 0.03807 30 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.ITGB1 View Gene Set 0.0003661 35 0.03807 30 Protein-protein-interaction for ITGB1 www.ncbi.nlm.ni...
Null ppi.GSTK1 View Gene Set 0.0003844 26 0.03807 30 Protein-protein-interaction for GSTK1 www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 0.0003841 28 0.03807 30 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.BCCIP View Gene Set 0.0003359 13 0.03807 30 Protein-protein-interaction for BCCIP www.ncbi.nlm.ni...
Null ppi.RBL1 View Gene Set 0.0004086 31 0.03807 30 Protein-protein-interaction for RBL1 www.ncbi.nlm.ni...
Null ppi.CUL4A View Gene Set 0.0003965 20 0.03807 30 Protein-protein-interaction for CUL4A www.ncbi.nlm.ni...
Null ppi.JUN View Gene Set 0.0004703 55 0.04024 42 Protein-protein-interaction for JUN www.ncbi.nlm.ni...
Null ppi.ZNF638 View Gene Set 0.0004963 11 0.04106 43 Protein-protein-interaction for ZNF638 www.ncbi.nlm.ni...
Null ppi.SMAD4 View Gene Set 0.0005027 52 0.04106 43 Protein-protein-interaction for SMAD4 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 0.0005732 15 0.04578 45 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.GEMIN4 View Gene Set 0.000607 29 0.04642 46 Protein-protein-interaction for GEMIN4 www.ncbi.nlm.ni...
Null ppi.YWHAG View Gene Set 0.0006052 119 0.04642 46 Protein-protein-interaction for YWHAG www.ncbi.nlm.ni...
Null ppi.RAE1 View Gene Set 0.0006553 20 0.04906 48 Protein-protein-interaction for RAE1 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null AndrogenReceptor View Gene Set 0.000984 78 0.007115 1 CELL_MAP - AndrogenReceptor gene set www.pathwaycomm...
Null TGFBR View Gene Set 0.001423 124 0.007115 1 CELL_MAP - TGFBR gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null pyrimidine deoxyribonucleotides de novo biosynthesis View Gene Set 3.146e-05 14 0.00818 1 HUMANCYC - pyrimidine deoxyribonucleotides de novo biosynthesis gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Validated targets of C-MYC transcriptional activation View Gene Set 7.519e-09 80 6.993e-07 1 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null C-MYC pathway View Gene Set 4.159e-09 149 6.993e-07 1 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null Proteogylcan syndecan-mediated signaling events View Gene Set 1.17e-07 875 7.256e-06 3 NCI_NATURE - Proteogylcan syndecan-mediated signaling events gene set www.pathwaycomm...
Null ErbB1 downstream signaling View Gene Set 2.516e-07 812 7.8e-06 4 NCI_NATURE - ErbB1 downstream signaling gene set www.pathwaycomm...
Null EGF receptor (ErbB1) signaling pathway View Gene Set 2.516e-07 812 7.8e-06 4 NCI_NATURE - EGF receptor (ErbB1) signaling pathway gene set www.pathwaycomm...
Null Internalization of ErbB1 View Gene Set 2.516e-07 812 7.8e-06 4 NCI_NATURE - Internalization of ErbB1 gene set www.pathwaycomm...
Null Glypican pathway View Gene Set 3.95e-07 937 9.83e-06 7 NCI_NATURE - Glypican pathway gene set www.pathwaycomm...
Null ErbB receptor signaling network View Gene Set 4.228e-07 841 9.83e-06 7 NCI_NATURE - ErbB receptor signaling network gene set www.pathwaycomm...
Null p53 pathway View Gene Set 5.199e-07 190 1.074e-05 9 NCI_NATURE - p53 pathway gene set www.pathwaycomm...
Null Direct p53 effectors View Gene Set 8.988e-07 139 1.672e-05 10 NCI_NATURE - Direct p53 effectors gene set www.pathwaycomm...
Null Glypican 1 network View Gene Set 1.327e-06 796 2.244e-05 11 NCI_NATURE - Glypican 1 network gene set www.pathwaycomm...
Null TRAIL signaling pathway View Gene Set 2.131e-06 686 3.079e-05 12 NCI_NATURE - TRAIL signaling pathway gene set www.pathwaycomm...
Null Syndecan-1-mediated signaling events View Gene Set 2.152e-06 688 3.079e-05 12 NCI_NATURE - Syndecan-1-mediated signaling events gene set www.pathwaycomm...
Null Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) View Gene Set 2.914e-06 677 3.872e-05 14 NCI_NATURE - Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) gene set www.pathwaycomm...
Null Signaling events mediated by focal adhesion kinase View Gene Set 1.093e-05 660 0.0001355 15 NCI_NATURE - Signaling events mediated by focal adhesion kinase gene set www.pathwaycomm...
Null Class I PI3K signaling events mediated by Akt View Gene Set 1.33e-05 532 0.0001546 16 NCI_NATURE - Class I PI3K signaling events mediated by Akt gene set www.pathwaycomm...
Null Class I PI3K signaling events View Gene Set 1.434e-05 632 0.0001569 17 NCI_NATURE - Class I PI3K signaling events gene set www.pathwaycomm...
Null Signaling mediated by p38-alpha and p38-beta View Gene Set 2.327e-05 50 0.0002405 18 NCI_NATURE - Signaling mediated by p38-alpha and p38-beta gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.0001181 29 0.001156 19 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...
Null ATF-2 transcription factor network View Gene Set 0.0005766 50 0.005362 20 NCI_NATURE - ATF-2 transcription factor network gene set www.pathwaycomm...
Null FoxO family signaling View Gene Set 0.0006056 49 0.005364 21 NCI_NATURE - FoxO family signaling gene set www.pathwaycomm...
Null Validated targets of C-MYC transcriptional repression View Gene Set 0.001231 64 0.0093 22 NCI_NATURE - Validated targets of C-MYC transcriptional repression gene set www.pathwaycomm...
Null TNF receptor signaling pathway View Gene Set 0.001175 299 0.0093 22 NCI_NATURE - TNF receptor signaling pathway gene set www.pathwaycomm...
Null TGF-beta receptor signaling View Gene Set 0.00135 306 0.0093 22 NCI_NATURE - TGF-beta receptor signaling gene set www.pathwaycomm...
Null E2F transcription factor network View Gene Set 0.001207 73 0.0093 22 NCI_NATURE - E2F transcription factor network gene set www.pathwaycomm...
Null Regulation of nuclear SMAD2/3 signaling View Gene Set 0.00135 306 0.0093 22 NCI_NATURE - Regulation of nuclear SMAD2/3 signaling gene set www.pathwaycomm...
Null Regulation of cytoplasmic and nuclear SMAD2/3 signaling View Gene Set 0.00135 306 0.0093 22 NCI_NATURE - Regulation of cytoplasmic and nuclear SMAD2/3 signaling gene set www.pathwaycomm...
Null ALK1 signaling events View Gene Set 0.001757 322 0.01167 28 NCI_NATURE - ALK1 signaling events gene set www.pathwaycomm...
Null IFN-gamma pathway View Gene Set 0.001868 590 0.01198 29 NCI_NATURE - IFN-gamma pathway gene set www.pathwaycomm...
Null ALK1 pathway View Gene Set 0.002171 324 0.01346 30 NCI_NATURE - ALK1 pathway gene set www.pathwaycomm...
Null p38 signaling mediated by MAPKAP kinases View Gene Set 0.003166 21 0.01899 31 NCI_NATURE - p38 signaling mediated by MAPKAP kinases gene set www.pathwaycomm...
Null Regulation of Telomerase View Gene Set 0.004211 68 0.02448 32 NCI_NATURE - Regulation of Telomerase gene set www.pathwaycomm...
Null Regulation of p38-alpha and p38-beta View Gene Set 0.004775 164 0.02691 33 NCI_NATURE - Regulation of p38-alpha and p38-beta gene set www.pathwaycomm...
Null Regulation of Wnt-mediated beta catenin signaling and target gene transcription View Gene Set 0.005335 135 0.02835 34 NCI_NATURE - Regulation of Wnt-mediated beta catenin signaling and target gene transcription gene set www.pathwaycomm...
Null IL1-mediated signaling events View Gene Set 0.005304 234 0.02835 34 NCI_NATURE - IL1-mediated signaling events gene set www.pathwaycomm...
Null Syndecan-4-mediated signaling events View Gene Set 0.005719 212 0.02955 36 NCI_NATURE - Syndecan-4-mediated signaling events gene set www.pathwaycomm...
Null Regulation of retinoblastoma protein View Gene Set 0.006316 66 0.03175 37 NCI_NATURE - Regulation of retinoblastoma protein gene set www.pathwaycomm...
Null p38 MAPK signaling pathway View Gene Set 0.008065 189 0.03948 38 NCI_NATURE - p38 MAPK signaling pathway gene set www.pathwaycomm...
Null Canonical Wnt signaling pathway View Gene Set 0.008863 156 0.04227 39 NCI_NATURE - Canonical Wnt signaling pathway gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 4.404e-13 138 2.46e-10 1 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 4.273e-13 185 2.46e-10 1 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 2.977e-12 158 1.108e-09 3 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null Gene Expression View Gene Set 5.426e-12 381 1.515e-09 4 REACTOME - Gene Expression gene set www.pathwaycomm...
Null Cell Cycle Mitotic View Gene Set 8.237e-12 312 1.84e-09 5 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null mRNA Splicing - Major Pathway View Gene Set 2.11e-10 107 3.367e-08 6 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 2.11e-10 107 3.367e-08 6 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 5.674e-10 174 7.922e-08 8 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 7.887e-08 103 8.009e-06 9 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null DNA Replication View Gene Set 7.317e-08 200 8.009e-06 9 REACTOME - DNA Replication gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 6.457e-08 104 8.009e-06 9 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null Transcription View Gene Set 9.588e-08 178 8.924e-06 12 REACTOME - Transcription gene set www.pathwaycomm...
Null DNA Repair View Gene Set 1.5e-07 108 1.288e-05 13 REACTOME - DNA Repair gene set www.pathwaycomm...
Null HIV Infection View Gene Set 2.119e-07 194 1.691e-05 14 REACTOME - HIV Infection gene set www.pathwaycomm...
Null Late Phase of HIV Life Cycle View Gene Set 2.697e-07 92 1.883e-05 15 REACTOME - Late Phase of HIV Life Cycle gene set www.pathwaycomm...
Null S Phase View Gene Set 2.623e-07 113 1.883e-05 15 REACTOME - S Phase gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 3.139e-07 113 2.062e-05 17 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null snRNP Assembly View Gene Set 3.525e-07 50 2.072e-05 18 REACTOME - snRNP Assembly gene set www.pathwaycomm...
Null Metabolism of non-coding RNA View Gene Set 3.525e-07 50 2.072e-05 18 REACTOME - Metabolism of non-coding RNA gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 6.556e-07 180 3.661e-05 20 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 7.247e-07 51 3.855e-05 21 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 8.933e-07 55 4.536e-05 22 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null Interactions of Rev with host cellular proteins View Gene Set 1.549e-06 33 7.522e-05 23 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 2.243e-06 32 0.0001044 24 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 4.26e-06 49 0.0001903 25 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 5.593e-06 102 0.0002403 26 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 6.217e-06 69 0.0002572 27 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 1.021e-05 30 0.0004073 28 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null Nuclear import of Rev protein View Gene Set 1.348e-05 30 0.0005194 29 REACTOME - Nuclear import of Rev protein gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 1.613e-05 96 0.0005813 30 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 1.572e-05 31 0.0005813 30 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null RNA Polymerase I Chain Elongation View Gene Set 1.79e-05 49 0.0006248 32 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null RNA Polymerase II Transcription View Gene Set 2.199e-05 101 0.0007012 33 REACTOME - RNA Polymerase II Transcription gene set www.pathwaycomm...
Null tRNA Aminoacylation View Gene Set 2.18e-05 42 0.0007012 33 REACTOME - tRNA Aminoacylation gene set www.pathwaycomm...
Null NEP/NS2 Interacts with the Cellular Export Machinery View Gene Set 2.167e-05 29 0.0007012 33 REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 2.26e-05 98 0.0007012 33 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus View Gene Set 2.426e-05 31 0.0007324 37 REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set www.pathwaycomm...
Null Smooth Muscle Contraction View Gene Set 2.684e-05 24 0.0007889 38 REACTOME - Smooth Muscle Contraction gene set www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 3.268e-05 93 0.0009334 39 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null Metabolism of mRNA View Gene Set 3.343e-05 125 0.0009334 39 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs View Gene Set 4.477e-05 31 0.00122 41 REACTOME - Vpr-mediated nuclear import of PICs gene set www.pathwaycomm...
Null Meiotic Recombination View Gene Set 5.955e-05 42 0.001584 42 REACTOME - Meiotic Recombination gene set www.pathwaycomm...
Null Double-Strand Break Repair View Gene Set 6.124e-05 27 0.001591 43 REACTOME - Double-Strand Break Repair gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 6.675e-05 35 0.001695 44 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null Interactions of Vpr with host cellular proteins View Gene Set 7.084e-05 34 0.001758 45 REACTOME - Interactions of Vpr with host cellular proteins gene set www.pathwaycomm...
Null mRNA Splicing - Minor Pathway View Gene Set 7.331e-05 42 0.00178 46 REACTOME - mRNA Splicing - Minor Pathway gene set www.pathwaycomm...
Null Cell Cycle Checkpoints View Gene Set 8.109e-05 124 0.001927 47 REACTOME - Cell Cycle Checkpoints gene set www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus View Gene Set 8.365e-05 29 0.001947 48 REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 8.93e-05 32 0.002017 49 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null Host Interactions of HIV factors View Gene Set 9.031e-05 132 0.002017 49 REACTOME - Host Interactions of HIV factors gene set www.pathwaycomm...
Null Nucleotide Excision Repair View Gene Set 9.543e-05 51 0.00209 51 REACTOME - Nucleotide Excision Repair gene set www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts View Gene Set 0.0001083 36 0.002325 52 REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 0.0001128 28 0.002377 53 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null Processive synthesis on the lagging strand View Gene Set 0.000121 15 0.002504 54 REACTOME - Processive synthesis on the lagging strand gene set www.pathwaycomm...
Null DNA Replication Pre-Initiation View Gene Set 0.0001274 90 0.002541 55 REACTOME - DNA Replication Pre-Initiation gene set www.pathwaycomm...
Null M/G1 Transition View Gene Set 0.0001274 90 0.002541 55 REACTOME - M/G1 Transition gene set www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA View Gene Set 0.0001478 33 0.002896 57 REACTOME - Transport of the SLBP Dependant Mature mRNA gene set www.pathwaycomm...
Null Homologous Recombination Repair View Gene Set 0.0001538 22 0.002912 58 REACTOME - Homologous Recombination Repair gene set www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks View Gene Set 0.0001538 22 0.002912 58 REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 0.0001635 29 0.003044 60 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null RNA Polymerase I Transcription View Gene Set 0.000194 57 0.003553 61 REACTOME - RNA Polymerase I Transcription gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Clearance View Gene Set 0.0002222 55 0.004004 62 REACTOME - RNA Polymerase I Promoter Clearance gene set www.pathwaycomm...
Null Base Excision Repair View Gene Set 0.0002585 19 0.004512 63 REACTOME - Base Excision Repair gene set www.pathwaycomm...
Null Resolution of Abasic Sites (AP sites) View Gene Set 0.0002585 19 0.004512 63 REACTOME - Resolution of Abasic Sites (AP sites) gene set www.pathwaycomm...
Null Transcription-coupled NER (TC-NER) View Gene Set 0.000284 45 0.00488 65 REACTOME - Transcription-coupled NER (TC-NER) gene set www.pathwaycomm...
Null Removal of the Flap Intermediate View Gene Set 0.0003576 14 0.006053 66 REACTOME - Removal of the Flap Intermediate gene set www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements View Gene Set 0.0004016 95 0.006696 67 REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set www.pathwaycomm...
Null Mitochondrial tRNA aminoacylation View Gene Set 0.0004261 21 0.007 68 REACTOME - Mitochondrial tRNA aminoacylation gene set www.pathwaycomm...
Null Cyclin E associated events during G1/S transition View Gene Set 0.0004861 64 0.007869 69 REACTOME - Cyclin E associated events during G1/S transition gene set www.pathwaycomm...
Null Cyclin A/B1 associated events during G2/M transition View Gene Set 0.0005247 19 0.008268 70 REACTOME - Cyclin A/B1 associated events during G2/M transition gene set www.pathwaycomm...
Null Regulation of mitotic cell cycle View Gene Set 0.000533 95 0.008268 70 REACTOME - Regulation of mitotic cell cycle gene set www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins View Gene Set 0.000533 95 0.008268 70 REACTOME - APC/C-mediated degradation of cell cycle proteins gene set www.pathwaycomm...
Null Global Genomic NER (GG-NER) View Gene Set 0.0005555 35 0.008499 73 REACTOME - Global Genomic NER (GG-NER) gene set www.pathwaycomm...
Null Interferon gamma signaling View Gene Set 0.0005928 48 0.008947 74 REACTOME - Interferon gamma signaling gene set www.pathwaycomm...
Null Removal of DNA patch containing abasic residue View Gene Set 0.0006099 17 0.008965 75 REACTOME - Removal of DNA patch containing abasic residue gene set www.pathwaycomm...
Null Resolution of AP sites via the multiple-nucleotide patch replacement pathway View Gene Set 0.0006099 17 0.008965 75 REACTOME - Resolution of AP sites via the multiple-nucleotide patch replacement pathway gene set www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA View Gene Set 0.0006858 34 0.009723 77 REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set www.pathwaycomm...
Null mRNA 3'-end processing View Gene Set 0.0006858 34 0.009723 77 REACTOME - mRNA 3'-end processing gene set www.pathwaycomm...
Null Switching of origins to a post-replicative state View Gene Set 0.0006964 76 0.009723 77 REACTOME - Switching of origins to a post-replicative state gene set www.pathwaycomm...
Null Orc1 removal from chromatin View Gene Set 0.0006964 76 0.009723 77 REACTOME - Orc1 removal from chromatin gene set www.pathwaycomm...
Null Regulation of Glucokinase by Glucokinase Regulatory Protein View Gene Set 0.0007803 29 0.0105 81 REACTOME - Regulation of Glucokinase by Glucokinase Regulatory Protein gene set www.pathwaycomm...
Null Mitotic Prometaphase View Gene Set 0.0007628 86 0.0105 81 REACTOME - Mitotic Prometaphase gene set www.pathwaycomm...
Null Metabolism of carbohydrates View Gene Set 0.0007799 93 0.0105 81 REACTOME - Metabolism of carbohydrates gene set www.pathwaycomm...
Null M Phase View Gene Set 0.0007916 90 0.01053 84 REACTOME - M Phase gene set www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis View Gene Set 0.0008389 22 0.0109 85 REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 0.0008311 43 0.0109 85 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere View Gene Set 0.0008553 11 0.01098 87 REACTOME - Processive synthesis on the C-strand of the telomere gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Escape View Gene Set 0.000905 21 0.01149 88 REACTOME - RNA Polymerase I Promoter Escape gene set www.pathwaycomm...
Null Pyrimidine biosynthesis View Gene Set 0.0009268 6 0.01163 89 REACTOME - Pyrimidine biosynthesis gene set www.pathwaycomm...
Null Removal of licensing factors from origins View Gene Set 0.000959 78 0.0119 90 REACTOME - Removal of licensing factors from origins gene set www.pathwaycomm...
Null Unwinding of DNA View Gene Set 0.0009704 11 0.01191 91 REACTOME - Unwinding of DNA gene set www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry View Gene Set 0.00111 62 0.01347 92 REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set www.pathwaycomm...
Null Deadenylation-dependent mRNA decay View Gene Set 0.001231 46 0.01479 93 REACTOME - Deadenylation-dependent mRNA decay gene set www.pathwaycomm...
Null E2F mediated regulation of DNA replication View Gene Set 0.001248 28 0.01482 94 REACTOME - E2F mediated regulation of DNA replication gene set www.pathwaycomm...
Null Post-Elongation Processing of the Transcript View Gene Set 0.001522 43 0.01753 95 REACTOME - Post-Elongation Processing of the Transcript gene set www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region View Gene Set 0.001522 43 0.01753 95 REACTOME - Cleavage of Growing Transcript in the Termination Region gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Termination View Gene Set 0.001522 43 0.01753 95 REACTOME - RNA Polymerase II Transcription Termination gene set www.pathwaycomm...
Null Muscle contraction View Gene Set 0.001627 50 0.01832 98 REACTOME - Muscle contraction gene set www.pathwaycomm...
Null Apoptosis View Gene Set 0.001645 148 0.01832 98 REACTOME - Apoptosis gene set www.pathwaycomm...
Null Resolution of D-loop structures through Holliday junction intermediates View Gene Set 0.001657 6 0.01832 98 REACTOME - Resolution of D-loop structures through Holliday junction intermediates gene set www.pathwaycomm...
Null Resolution of D-loop structures View Gene Set 0.001657 6 0.01832 98 REACTOME - Resolution of D-loop structures gene set www.pathwaycomm...
Null RNA Polymerase II Pre-transcription Events View Gene Set 0.00185 58 0.02013 102 REACTOME - RNA Polymerase II Pre-transcription Events gene set www.pathwaycomm...
Null Purine ribonucleoside monophosphate biosynthesis View Gene Set 0.001861 7 0.02013 102 REACTOME - Purine ribonucleoside monophosphate biosynthesis gene set www.pathwaycomm...
Null Regulation of DNA replication View Gene Set 0.001874 81 0.02013 102 REACTOME - Regulation of DNA replication gene set www.pathwaycomm...
Null Cytosolic tRNA aminoacylation View Gene Set 0.001948 24 0.02073 105 REACTOME - Cytosolic tRNA aminoacylation gene set www.pathwaycomm...
Null Lagging Strand Synthesis View Gene Set 0.002126 20 0.02241 106 REACTOME - Lagging Strand Synthesis gene set www.pathwaycomm...
Null Transcription of the HIV genome View Gene Set 0.002151 60 0.02245 107 REACTOME - Transcription of the HIV genome gene set www.pathwaycomm...
Null HIV-1 Transcription Initiation View Gene Set 0.002464 40 0.02386 108 REACTOME - HIV-1 Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase II HIV-1 Promoter Escape View Gene Set 0.002464 40 0.02386 108 REACTOME - RNA Polymerase II HIV-1 Promoter Escape gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 0.002478 37 0.02386 108 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null RNA Polymerase II Promoter Escape View Gene Set 0.002464 40 0.02386 108 REACTOME - RNA Polymerase II Promoter Escape gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Initiation And Promoter Clearance View Gene Set 0.002464 40 0.02386 108 REACTOME - RNA Polymerase II Transcription Initiation And Promoter Clearance gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Initiation View Gene Set 0.002464 40 0.02386 108 REACTOME - RNA Polymerase II Transcription Initiation gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Pre-Initiation And Promoter Opening View Gene Set 0.002464 40 0.02386 108 REACTOME - RNA Polymerase II Transcription Pre-Initiation And Promoter Opening gene set www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase View Gene Set 0.002367 88 0.02386 108 REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set www.pathwaycomm...
Null Localization of the PINCH-ILK-PARVIN complex to focal adhesions View Gene Set 0.002353 4 0.02386 108 REACTOME - Localization of the PINCH-ILK-PARVIN complex to focal adhesions gene set www.pathwaycomm...
Null Removal of the Flap Intermediate from the C-strand View Gene Set 0.002621 10 0.02502 117 REACTOME - Removal of the Flap Intermediate from the C-strand gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 0.003053 73 0.02865 118 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 0.003053 72 0.02865 118 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere View Gene Set 0.003111 35 0.02872 120 REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set www.pathwaycomm...
Null Nucleosome assembly View Gene Set 0.003111 35 0.02872 120 REACTOME - Nucleosome assembly gene set www.pathwaycomm...
Null Deadenylation of mRNA View Gene Set 0.00325 22 0.02976 122 REACTOME - Deadenylation of mRNA gene set www.pathwaycomm...
Null Hexose transport View Gene Set 0.003396 40 0.03084 123 REACTOME - Hexose transport gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex containing HIV-1 Tat View Gene Set 0.003526 41 0.03126 124 REACTOME - Formation of HIV-1 elongation complex containing HIV-1 Tat gene set www.pathwaycomm...
Null Tat-mediated elongation of the HIV-1 transcript View Gene Set 0.003526 41 0.03126 124 REACTOME - Tat-mediated elongation of the HIV-1 transcript gene set www.pathwaycomm...
Null HIV-1 Transcription Elongation View Gene Set 0.003526 41 0.03126 124 REACTOME - HIV-1 Transcription Elongation gene set www.pathwaycomm...
Null Formation of the HIV-1 Early Elongation Complex View Gene Set 0.003682 32 0.03143 127 REACTOME - Formation of the HIV-1 Early Elongation Complex gene set www.pathwaycomm...
Null Formation of HIV-1 elongation complex in the absence of HIV-1 Tat View Gene Set 0.003686 42 0.03143 127 REACTOME - Formation of HIV-1 elongation complex in the absence of HIV-1 Tat gene set www.pathwaycomm...
Null Formation of RNA Pol II elongation complex View Gene Set 0.003686 42 0.03143 127 REACTOME - Formation of RNA Pol II elongation complex gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Elongation View Gene Set 0.003686 42 0.03143 127 REACTOME - RNA Polymerase II Transcription Elongation gene set www.pathwaycomm...
Null Formation of the Early Elongation Complex View Gene Set 0.003682 32 0.03143 127 REACTOME - Formation of the Early Elongation Complex gene set www.pathwaycomm...
Null Activation myristolyation of BID and translocation to mitochondria View Gene Set 0.003886 5 0.03289 132 REACTOME - Activation myristolyation of BID and translocation to mitochondria gene set www.pathwaycomm... myristolyation ...
Null Glucose transport View Gene Set 0.003969 38 0.03334 133 REACTOME - Glucose transport gene set www.pathwaycomm...
Null Loss of proteins required for interphase microtubule organization from the centrosome View Gene Set 0.004722 62 0.03907 134 REACTOME - Loss of proteins required for interphase microtubule organization from the centrosome gene set www.pathwaycomm...
Null Loss of Nlp from mitotic centrosomes View Gene Set 0.004722 62 0.03907 134 REACTOME - Loss of Nlp from mitotic centrosomes gene set www.pathwaycomm...
Null Destabilization of mRNA by KSRP View Gene Set 0.00478 18 0.03926 136 REACTOME - Destabilization of mRNA by KSRP gene set www.pathwaycomm...
Null Inhibition of replication initiation of damaged DNA by Rb/E2F1 View Gene Set 0.005107 7 0.04164 137 REACTOME - Inhibition of replication initiation of damaged DNA by Rb/E2F1 gene set www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 0.005178 86 0.04191 138 REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Packaging Of Telomere Ends View Gene Set 0.005676 21 0.04561 139 REACTOME - Packaging Of Telomere Ends gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Initiation View Gene Set 0.005727 25 0.04569 140 REACTOME - RNA Polymerase I Transcription Initiation gene set www.pathwaycomm...
Null Activation of DNA fragmentation factor View Gene Set 0.005865 8 0.04581 141 REACTOME - Activation of DNA fragmentation factor gene set www.pathwaycomm...
Null Apoptosis induced DNA fragmentation View Gene Set 0.005865 8 0.04581 141 REACTOME - Apoptosis induced DNA fragmentation gene set www.pathwaycomm...
Null Assembly of the pre-replicative complex View Gene Set 0.005862 75 0.04581 141 REACTOME - Assembly of the pre-replicative complex gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Opening View Gene Set 0.005981 31 0.04639 144 REACTOME - RNA Polymerase I Promoter Opening gene set www.pathwaycomm...
Null Formation of transcription-coupled NER (TC-NER) repair complex View Gene Set 0.006426 29 0.04907 145 REACTOME - Formation of transcription-coupled NER (TC-NER) repair complex gene set www.pathwaycomm...
Null Dual incision reaction in TC-NER View Gene Set 0.006426 29 0.04907 145 REACTOME - Dual incision reaction in TC-NER gene set www.pathwaycomm...
Null Destabilization of mRNA by Tristetraprolin (TTP) View Gene Set 0.006458 18 0.04907 145 REACTOME - Destabilization of mRNA by Tristetraprolin (TTP) gene set www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548n View Gene Set 2.917e-10 3830 9.873e-08 1 microRNA targets for hsa-miR-548n from miranda.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 2.641e-10 3575 9.873e-08 1 microRNA targets for hsa-miR-590-3p from miranda.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 7.688e-10 1638 1.735e-07 3 microRNA targets for hsa-miR-381 from miranda.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 1.532e-09 3130 2.134e-07 4 microRNA targets for hsa-miR-548c-3p from miranda.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 1.576e-09 2925 2.134e-07 4 microRNA targets for hsa-miR-561 from miranda.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 2.467e-09 1644 2.55e-07 6 microRNA targets for hsa-miR-300 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 2.636e-09 2983 2.55e-07 6 microRNA targets for hsa-miR-548a-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548i View Gene Set 4.597e-09 2860 3.89e-07 8 microRNA targets for hsa-miR-548i from miranda.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 7.272e-09 2322 5.47e-07 9 microRNA targets for hsa-miR-607 from miranda.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 9.475e-09 2420 6.415e-07 10 microRNA targets for hsa-miR-548a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 1.204e-08 3175 7.408e-07 11 microRNA targets for hsa-miR-548b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548e View Gene Set 1.576e-08 2325 8.889e-07 12 microRNA targets for hsa-miR-548e from miranda.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 2.317e-08 2900 1.207e-06 13 microRNA targets for hsa-miR-559 from miranda.targets www.mirbase.org...
Null hsa-miR-548g View Gene Set 6.123e-08 2114 2.961e-06 14 microRNA targets for hsa-miR-548g from miranda.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 7.712e-08 1379 3.481e-06 15 microRNA targets for hsa-miR-888 from miranda.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 1.211e-07 3124 5.125e-06 16 microRNA targets for hsa-miR-570 from miranda.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 1.289e-07 2909 5.135e-06 17 microRNA targets for hsa-miR-548c-5p from miranda.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 1.529e-07 3270 5.752e-06 18 microRNA targets for hsa-miR-548d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 2.296e-07 2312 8.183e-06 19 microRNA targets for hsa-miR-142-5p from miranda.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 4.495e-07 1858 1.521e-05 20 microRNA targets for hsa-miR-655 from miranda.targets www.mirbase.org...
Null hsa-miR-513a-3p View Gene Set 8.081e-07 2711 2.487e-05 21 microRNA targets for hsa-miR-513a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-548j View Gene Set 8.058e-07 2652 2.487e-05 21 microRNA targets for hsa-miR-548j from miranda.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 8.816e-07 2210 2.595e-05 23 microRNA targets for hsa-miR-548d-3p from miranda.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 1.095e-06 2438 3.088e-05 24 microRNA targets for hsa-miR-944 from miranda.targets www.mirbase.org...
Null hsa-miR-548h View Gene Set 1.152e-06 2539 3.12e-05 25 microRNA targets for hsa-miR-548h from miranda.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 1.296e-06 1511 3.373e-05 26 microRNA targets for hsa-miR-26b from miranda.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 1.758e-06 2574 4.407e-05 27 microRNA targets for hsa-miR-524-5p from miranda.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 2.368e-06 2246 5.528e-05 28 microRNA targets for hsa-miR-545 from miranda.targets www.mirbase.org...
Null hsa-miR-548l View Gene Set 2.36e-06 2599 5.528e-05 28 microRNA targets for hsa-miR-548l from miranda.targets www.mirbase.org...
Null hsa-miR-374a View Gene Set 2.571e-06 1933 5.802e-05 30 microRNA targets for hsa-miR-374a from miranda.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 2.751e-06 1040 6.007e-05 31 microRNA targets for hsa-miR-606 from miranda.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 3.178e-06 1859 6.723e-05 32 microRNA targets for hsa-miR-802 from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 3.519e-06 1789 7.219e-05 33 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-1323 View Gene Set 3.68e-06 2071 7.327e-05 34 microRNA targets for hsa-miR-1323 from miranda.targets www.mirbase.org...
Null hsa-miR-548f View Gene Set 3.869e-06 2082 7.484e-05 35 microRNA targets for hsa-miR-548f from miranda.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 4.002e-06 2072 7.527e-05 36 microRNA targets for hsa-miR-544 from miranda.targets www.mirbase.org...
Null hsa-miR-548o View Gene Set 7.891e-06 2216 0.0001406 37 microRNA targets for hsa-miR-548o from miranda.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 7.824e-06 943 0.0001406 37 microRNA targets for hsa-miR-935 from miranda.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 1.049e-05 1707 0.0001821 39 microRNA targets for hsa-miR-338-5p from miranda.targets www.mirbase.org...
Null hsa-miR-30a View Gene Set 1.183e-05 1611 0.0002003 40 microRNA targets for hsa-miR-30a from miranda.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 1.37e-05 1695 0.0002246 41 microRNA targets for hsa-miR-30b from miranda.targets www.mirbase.org...
Null hsa-miR-335 View Gene Set 1.393e-05 1631 0.0002246 41 microRNA targets for hsa-miR-335 from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 2.002e-05 1794 0.0003152 43 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 2.224e-05 1971 0.0003422 44 microRNA targets for hsa-miR-582-5p from miranda.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 2.391e-05 2681 0.0003574 45 microRNA targets for hsa-miR-186 from miranda.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 2.428e-05 2025 0.0003574 45 microRNA targets for hsa-miR-768-3p from miranda.targets www.mirbase.org...
Null hsa-miR-1283 View Gene Set 2.561e-05 1960 0.0003617 47 microRNA targets for hsa-miR-1283 from miranda.targets www.mirbase.org...
Null hsa-miR-30c View Gene Set 2.564e-05 1792 0.0003617 47 microRNA targets for hsa-miR-30c from miranda.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 3.041e-05 1236 0.0004202 49 microRNA targets for hsa-miR-361-5p from miranda.targets www.mirbase.org...
Null hsa-miR-494 View Gene Set 3.169e-05 1886 0.0004291 50 microRNA targets for hsa-miR-494 from miranda.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 3.253e-05 1877 0.0004319 51 microRNA targets for hsa-miR-522 from miranda.targets www.mirbase.org...
Null hsa-miR-548p View Gene Set 3.578e-05 2743 0.0004571 52 microRNA targets for hsa-miR-548p from miranda.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 3.537e-05 1022 0.0004571 52 microRNA targets for hsa-miR-891b from miranda.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 4.126e-05 1452 0.0005173 54 microRNA targets for hsa-miR-633 from miranda.targets www.mirbase.org...
Null hsa-miR-30e View Gene Set 4.815e-05 1792 0.0005927 55 microRNA targets for hsa-miR-30e from miranda.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 5.268e-05 1767 0.0006368 56 microRNA targets for hsa-miR-144 from miranda.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 5.65e-05 2504 0.0006605 57 microRNA targets for hsa-miR-340 from miranda.targets www.mirbase.org...
Null hsa-miR-580 View Gene Set 5.659e-05 2207 0.0006605 57 microRNA targets for hsa-miR-580 from miranda.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 6.027e-05 1793 0.00068 59 microRNA targets for hsa-miR-495 from miranda.targets www.mirbase.org...
Null hsa-miR-548m View Gene Set 5.967e-05 2295 0.00068 59 microRNA targets for hsa-miR-548m from miranda.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 8.512e-05 1282 0.0009295 61 microRNA targets for hsa-miR-409-3p from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 8.412e-05 1921 0.0009295 61 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-513b View Gene Set 9.016e-05 1603 0.0009689 63 microRNA targets for hsa-miR-513b from miranda.targets www.mirbase.org...
Null hsa-miR-105 View Gene Set 0.0001075 1644 0.001138 64 microRNA targets for hsa-miR-105 from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 0.0001215 2111 0.001265 65 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.0001378 1414 0.001413 66 microRNA targets for hsa-miR-26a from miranda.targets www.mirbase.org...
Null hsa-miR-1248 View Gene Set 0.0001406 3013 0.00142 67 microRNA targets for hsa-miR-1248 from miranda.targets www.mirbase.org...
Null hsa-miR-1197 View Gene Set 0.0001817 1210 0.001808 68 microRNA targets for hsa-miR-1197 from miranda.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.0001843 1019 0.001808 68 microRNA targets for hsa-miR-1297 from miranda.targets www.mirbase.org...
Null hsa-miR-548k View Gene Set 0.0002144 1874 0.002073 70 microRNA targets for hsa-miR-548k from miranda.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.0002346 1773 0.002173 71 microRNA targets for hsa-miR-141 from miranda.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 0.0002384 2114 0.002173 71 microRNA targets for hsa-miR-301a from miranda.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.0002407 2065 0.002173 71 microRNA targets for hsa-miR-568 from miranda.targets www.mirbase.org...
Null hsa-miR-577 View Gene Set 0.000234 2745 0.002173 71 microRNA targets for hsa-miR-577 from miranda.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 0.0002337 1217 0.002173 71 microRNA targets for hsa-miR-582-3p from miranda.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.0002766 1687 0.002401 76 microRNA targets for hsa-miR-130a from miranda.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.0002748 1449 0.002401 76 microRNA targets for hsa-miR-380 from miranda.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 0.0002759 1919 0.002401 76 microRNA targets for hsa-miR-452 from miranda.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.0002811 1180 0.002409 79 microRNA targets for hsa-miR-34b from miranda.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 0.0003074 2090 0.002601 80 microRNA targets for hsa-miR-301b from miranda.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 0.0003187 2392 0.002664 81 microRNA targets for hsa-miR-424 from miranda.targets www.mirbase.org...
Null hsa-miR-1276 View Gene Set 0.0003234 1352 0.00267 82 microRNA targets for hsa-miR-1276 from miranda.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.0003572 1861 0.002914 83 microRNA targets for hsa-miR-23a from miranda.targets www.mirbase.org...
Null hsa-miR-922 View Gene Set 0.0003744 2129 0.003018 84 microRNA targets for hsa-miR-922 from miranda.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.0003909 2258 0.003113 85 microRNA targets for hsa-miR-16 from miranda.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 0.0004006 1619 0.003154 86 microRNA targets for hsa-miR-200a from miranda.targets www.mirbase.org...
Null hsa-miR-605 View Gene Set 0.0004347 1295 0.003383 87 microRNA targets for hsa-miR-605 from miranda.targets www.mirbase.org...
Null hsa-miR-1278 View Gene Set 0.0004576 1219 0.003483 88 microRNA targets for hsa-miR-1278 from miranda.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 0.0004579 1629 0.003483 88 microRNA targets for hsa-miR-421 from miranda.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.000472 1136 0.00355 90 microRNA targets for hsa-miR-491-3p from miranda.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.000487 2219 0.003623 91 microRNA targets for hsa-miR-195 from miranda.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.000501 1323 0.003645 92 microRNA targets for hsa-miR-146a from miranda.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.0005061 1713 0.003645 92 microRNA targets for hsa-miR-377 from miranda.targets www.mirbase.org...
Null hsa-miR-410 View Gene Set 0.0004978 1101 0.003645 92 microRNA targets for hsa-miR-410 from miranda.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.0005487 1500 0.00391 95 microRNA targets for hsa-miR-30d from miranda.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.0005755 2384 0.004059 96 microRNA targets for hsa-miR-641 from miranda.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.0005955 1319 0.004142 97 microRNA targets for hsa-miR-124 from miranda.targets www.mirbase.org...
Null hsa-miR-146b-5p View Gene Set 0.0006058 1330 0.004142 97 microRNA targets for hsa-miR-146b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-600 View Gene Set 0.0006025 1431 0.004142 97 microRNA targets for hsa-miR-600 from miranda.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 0.0006217 1316 0.004209 100 microRNA targets for hsa-miR-217 from miranda.targets www.mirbase.org...
Null hsa-miR-539 View Gene Set 0.0006338 2308 0.004248 101 microRNA targets for hsa-miR-539 from miranda.targets www.mirbase.org...
Null hsa-miR-656 View Gene Set 0.0006651 1774 0.004414 102 microRNA targets for hsa-miR-656 from miranda.targets www.mirbase.org...
Null hsa-miR-1252 View Gene Set 0.0006746 3125 0.004434 103 microRNA targets for hsa-miR-1252 from miranda.targets www.mirbase.org...
Null hsa-miR-575 View Gene Set 0.0006864 958 0.004468 104 microRNA targets for hsa-miR-575 from miranda.targets www.mirbase.org...
Null hsa-miR-876-5p View Gene Set 0.0006951 1699 0.004482 105 microRNA targets for hsa-miR-876-5p from miranda.targets www.mirbase.org...
Null hsa-miR-136 View Gene Set 0.0007226 2134 0.004615 106 microRNA targets for hsa-miR-136 from miranda.targets www.mirbase.org...
Null hsa-miR-505 View Gene Set 0.0007539 1120 0.00477 107 microRNA targets for hsa-miR-505 from miranda.targets www.mirbase.org...
Null hsa-miR-1264 View Gene Set 0.0007931 2008 0.004972 108 microRNA targets for hsa-miR-1264 from miranda.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.0009556 1802 0.005935 109 microRNA targets for hsa-miR-374b from miranda.targets www.mirbase.org...
Null hsa-miR-411 View Gene Set 0.001021 558 0.006281 110 microRNA targets for hsa-miR-411 from miranda.targets www.mirbase.org...
Null hsa-miR-142-3p View Gene Set 0.001092 1169 0.006661 111 microRNA targets for hsa-miR-142-3p from miranda.targets www.mirbase.org...
Null hsa-miR-579 View Gene Set 0.001167 1840 0.007053 112 microRNA targets for hsa-miR-579 from miranda.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.00122 1858 0.007311 113 microRNA targets for hsa-miR-23b from miranda.targets www.mirbase.org...
Null hsa-miR-507 View Gene Set 0.001248 1167 0.007412 114 microRNA targets for hsa-miR-507 from miranda.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 0.001299 1386 0.007647 115 microRNA targets for hsa-miR-506 from miranda.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.001399 1772 0.008095 116 microRNA targets for hsa-miR-1 from miranda.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 0.001392 1044 0.008095 116 microRNA targets for hsa-miR-496 from miranda.targets www.mirbase.org...
Null hsa-miR-567 View Gene Set 0.001431 1183 0.008208 118 microRNA targets for hsa-miR-567 from miranda.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.001539 2301 0.008549 119 microRNA targets for hsa-miR-15a from miranda.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.001539 2080 0.008549 119 microRNA targets for hsa-miR-320a from miranda.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.001539 2080 0.008549 119 microRNA targets for hsa-miR-320b from miranda.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 0.001541 2159 0.008549 119 microRNA targets for hsa-miR-9 from miranda.targets www.mirbase.org...
Null hsa-miR-216b View Gene Set 0.001557 1416 0.008568 123 microRNA targets for hsa-miR-216b from miranda.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.001649 1641 0.009004 124 microRNA targets for hsa-miR-382 from miranda.targets www.mirbase.org...
Null hsa-miR-155 View Gene Set 0.00174 1331 0.009426 125 microRNA targets for hsa-miR-155 from miranda.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.001769 1860 0.009506 126 microRNA targets for hsa-miR-320c from miranda.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.001784 1053 0.009509 127 microRNA targets for hsa-miR-21 from miranda.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.001925 1454 0.01006 128 microRNA targets for hsa-miR-369-3p from miranda.targets www.mirbase.org...
Null hsa-miR-450b-5p View Gene Set 0.001935 2243 0.01006 128 microRNA targets for hsa-miR-450b-5p from miranda.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 0.001906 1494 0.01006 128 microRNA targets for hsa-miR-576-5p from miranda.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 0.001947 1335 0.01006 128 microRNA targets for hsa-miR-613 from miranda.targets www.mirbase.org...
Null hsa-miR-768-5p View Gene Set 0.001978 2575 0.01014 132 microRNA targets for hsa-miR-768-5p from miranda.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.002 2091 0.01018 133 microRNA targets for hsa-miR-302b from miranda.targets www.mirbase.org...
Null hsa-miR-199a-3p View Gene Set 0.002045 1232 0.01026 134 microRNA targets for hsa-miR-199a-3p from miranda.targets www.mirbase.org...
Null hsa-miR-199b-3p View Gene Set 0.002045 1232 0.01026 134 microRNA targets for hsa-miR-199b-3p from miranda.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.002065 2061 0.01028 136 microRNA targets for hsa-miR-520d-5p from miranda.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.002303 2324 0.01114 137 microRNA targets for hsa-miR-20a from miranda.targets www.mirbase.org...
Null hsa-miR-331-5p View Gene Set 0.002272 815 0.01114 137 microRNA targets for hsa-miR-331-5p from miranda.targets www.mirbase.org...
Null hsa-miR-498 View Gene Set 0.002301 1182 0.01114 137 microRNA targets for hsa-miR-498 from miranda.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 0.002288 1646 0.01114 137 microRNA targets for hsa-miR-519d from miranda.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 0.002499 703 0.01192 141 microRNA targets for hsa-miR-518c from miranda.targets www.mirbase.org...
Null hsa-miR-610 View Gene Set 0.002498 853 0.01192 141 microRNA targets for hsa-miR-610 from miranda.targets www.mirbase.org...
Null hsa-miR-557 View Gene Set 0.002658 1175 0.01259 143 microRNA targets for hsa-miR-557 from miranda.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.002785 1239 0.01309 144 microRNA targets for hsa-miR-183 from miranda.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 0.003037 1309 0.01418 145 microRNA targets for hsa-miR-499-5p from miranda.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.003508 1844 0.01627 146 microRNA targets for hsa-miR-181c from miranda.targets www.mirbase.org...
Null hsa-miR-1290 View Gene Set 0.003915 1539 0.01791 147 microRNA targets for hsa-miR-1290 from miranda.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 0.003904 1013 0.01791 147 microRNA targets for hsa-miR-569 from miranda.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.004019 2054 0.01816 149 microRNA targets for hsa-miR-302a from miranda.targets www.mirbase.org...
Null hsa-miR-653 View Gene Set 0.004024 1411 0.01816 149 microRNA targets for hsa-miR-653 from miranda.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 0.004292 1605 0.01924 151 microRNA targets for hsa-miR-206 from miranda.targets www.mirbase.org...
Null hsa-miR-204 View Gene Set 0.004463 1890 0.01988 152 microRNA targets for hsa-miR-204 from miranda.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.004544 1719 0.02011 153 microRNA targets for hsa-miR-320d from miranda.targets www.mirbase.org...
Null hsa-miR-1253 View Gene Set 0.004903 1976 0.02156 154 microRNA targets for hsa-miR-1253 from miranda.targets www.mirbase.org...
Null hsa-miR-95 View Gene Set 0.005014 538 0.0219 155 microRNA targets for hsa-miR-95 from miranda.targets www.mirbase.org...
Null hsa-miR-1185 View Gene Set 0.005119 738 0.02222 156 microRNA targets for hsa-miR-1185 from miranda.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.00524 2080 0.0226 157 microRNA targets for hsa-miR-497 from miranda.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.005733 1949 0.02441 158 microRNA targets for hsa-miR-454 from miranda.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 0.005734 1229 0.02441 158 microRNA targets for hsa-miR-485-3p from miranda.targets www.mirbase.org...
Null hsa-miR-224 View Gene Set 0.005814 1307 0.0246 160 microRNA targets for hsa-miR-224 from miranda.targets www.mirbase.org...
Null hsa-miR-1292 View Gene Set 0.005858 665 0.02463 161 microRNA targets for hsa-miR-1292 from miranda.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.006195 2189 0.02573 162 microRNA targets for hsa-miR-19a from miranda.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.00618 2061 0.02573 162 microRNA targets for hsa-miR-373 from miranda.targets www.mirbase.org...
Null hsa-miR-621 View Gene Set 0.006327 615 0.02612 164 microRNA targets for hsa-miR-621 from miranda.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.006611 1504 0.02707 165 microRNA targets for hsa-miR-148a from miranda.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 0.006637 684 0.02707 165 microRNA targets for hsa-miR-191 from miranda.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.006902 2253 0.02798 167 microRNA targets for hsa-miR-15b from miranda.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.007081 2295 0.02851 168 microRNA targets for hsa-miR-203 from miranda.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.007117 1199 0.02851 168 microRNA targets for hsa-miR-376a from miranda.targets www.mirbase.org...
Null hsa-miR-383 View Gene Set 0.00755 1319 0.03006 170 microRNA targets for hsa-miR-383 from miranda.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.007688 1682 0.03044 171 microRNA targets for hsa-miR-130b from miranda.targets www.mirbase.org...
Null hsa-miR-597 View Gene Set 0.00783 729 0.03082 172 microRNA targets for hsa-miR-597 from miranda.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.008337 2212 0.03262 173 microRNA targets for hsa-miR-181d from miranda.targets www.mirbase.org...
Null hsa-miR-1208 View Gene Set 0.008472 1127 0.03271 174 microRNA targets for hsa-miR-1208 from miranda.targets www.mirbase.org...
Null hsa-miR-1259 View Gene Set 0.008524 1309 0.03271 174 microRNA targets for hsa-miR-1259 from miranda.targets www.mirbase.org...
Null hsa-miR-1298 View Gene Set 0.008553 406 0.03271 174 microRNA targets for hsa-miR-1298 from miranda.targets www.mirbase.org...
Null hsa-miR-219-2-3p View Gene Set 0.008437 1131 0.03271 174 microRNA targets for hsa-miR-219-2-3p from miranda.targets www.mirbase.org...
Null hsa-miR-625 View Gene Set 0.008615 1754 0.03277 178 microRNA targets for hsa-miR-625 from miranda.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 0.008915 1773 0.03372 179 microRNA targets for hsa-miR-190 from miranda.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.009057 1804 0.03406 180 microRNA targets for hsa-miR-106b from miranda.targets www.mirbase.org...
Null hsa-miR-325 View Gene Set 0.009345 855 0.03495 181 microRNA targets for hsa-miR-325 from miranda.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 0.009623 2173 0.03522 182 microRNA targets for hsa-miR-106a from miranda.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 0.009623 2173 0.03522 182 microRNA targets for hsa-miR-17 from miranda.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.009572 2122 0.03522 182 microRNA targets for hsa-miR-20b from miranda.targets www.mirbase.org...
Null hsa-miR-549 View Gene Set 0.009625 875 0.03522 182 microRNA targets for hsa-miR-549 from miranda.targets www.mirbase.org...
Null hsa-miR-96 View Gene Set 0.01017 1330 0.037 186 microRNA targets for hsa-miR-96 from miranda.targets www.mirbase.org...
Null hsa-miR-1826 View Gene Set 0.01054 1313 0.03815 187 microRNA targets for hsa-miR-1826 from miranda.targets www.mirbase.org...
Null hsa-miR-299-5p View Gene Set 0.01082 622 0.03898 188 microRNA targets for hsa-miR-299-5p from miranda.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.01117 1096 0.04002 189 microRNA targets for hsa-miR-212 from miranda.targets www.mirbase.org...
Null hsa-miR-552 View Gene Set 0.01126 1359 0.04011 190 microRNA targets for hsa-miR-552 from miranda.targets www.mirbase.org...
Null hsa-miR-1183 View Gene Set 0.01147 2417 0.04054 191 microRNA targets for hsa-miR-1183 from miranda.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 0.0115 1357 0.04054 191 microRNA targets for hsa-miR-376b from miranda.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 0.0119 1222 0.04111 193 microRNA targets for hsa-miR-139-5p from miranda.targets www.mirbase.org...
Null hsa-miR-513c View Gene Set 0.01184 1451 0.04111 193 microRNA targets for hsa-miR-513c from miranda.targets www.mirbase.org...
Null hsa-miR-515-5p View Gene Set 0.01186 1821 0.04111 193 microRNA targets for hsa-miR-515-5p from miranda.targets www.mirbase.org...
Null hsa-miR-578 View Gene Set 0.01189 1735 0.04111 193 microRNA targets for hsa-miR-578 from miranda.targets www.mirbase.org...
Null hsa-miR-1324 View Gene Set 0.01198 2051 0.04117 197 microRNA targets for hsa-miR-1324 from miranda.targets www.mirbase.org...
Null hsa-miR-634 View Gene Set 0.01224 1080 0.04164 198 microRNA targets for hsa-miR-634 from miranda.targets www.mirbase.org...
Null hsa-miR-921 View Gene Set 0.01224 1454 0.04164 198 microRNA targets for hsa-miR-921 from miranda.targets www.mirbase.org...
Null hsa-miR-1257 View Gene Set 0.01286 1202 0.04279 200 microRNA targets for hsa-miR-1257 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-let-7b* View Gene Set 1.214e-09 772 8.629e-07 1 microRNA targets for hsa-let-7b* from mirbase.targets www.mirbase.org...
Null hsa-let-7f-1* View Gene Set 7.495e-08 751 2.665e-05 2 microRNA targets for hsa-let-7f-1* from mirbase.targets www.mirbase.org...
Null hsa-let-7a* View Gene Set 2.845e-07 772 5.969e-05 3 microRNA targets for hsa-let-7a* from mirbase.targets www.mirbase.org...
Null hsa-miR-590-5p View Gene Set 3.358e-07 837 5.969e-05 3 microRNA targets for hsa-miR-590-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-191 View Gene Set 4.713e-07 709 6.701e-05 5 microRNA targets for hsa-miR-191 from mirbase.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 8.009e-07 796 9.49e-05 6 microRNA targets for hsa-miR-144 from mirbase.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 9.414e-07 581 9.562e-05 7 microRNA targets for hsa-miR-340 from mirbase.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 1.498e-06 654 0.0001331 8 microRNA targets for hsa-miR-655 from mirbase.targets www.mirbase.org...
Null hsa-miR-582-3p View Gene Set 1.775e-06 821 0.0001402 9 microRNA targets for hsa-miR-582-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 3.97e-06 677 0.0002376 10 microRNA targets for hsa-miR-361-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 3.55e-06 793 0.0002376 10 microRNA targets for hsa-miR-429 from mirbase.targets www.mirbase.org...
Null hsa-miR-452 View Gene Set 4.345e-06 729 0.0002376 10 microRNA targets for hsa-miR-452 from mirbase.targets www.mirbase.org...
Null hsa-miR-889 View Gene Set 4.32e-06 650 0.0002376 10 microRNA targets for hsa-miR-889 from mirbase.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 5.302e-06 871 0.0002513 14 microRNA targets for hsa-miR-200c from mirbase.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 5.036e-06 708 0.0002513 14 microRNA targets for hsa-miR-524-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7d* View Gene Set 5.789e-06 781 0.0002572 16 microRNA targets for hsa-let-7d* from mirbase.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 1.098e-05 596 0.0004594 17 microRNA targets for hsa-miR-606 from mirbase.targets www.mirbase.org...
Null hsa-miR-222 View Gene Set 1.632e-05 714 0.0006445 18 microRNA targets for hsa-miR-222 from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 2.522e-05 899 0.0009436 19 microRNA targets for hsa-miR-548a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 3.11e-05 672 0.001055 20 microRNA targets for hsa-miR-300 from mirbase.targets www.mirbase.org...
Null hsa-miR-518c View Gene Set 3.115e-05 921 0.001055 20 microRNA targets for hsa-miR-518c from mirbase.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 3.877e-05 651 0.001253 22 microRNA targets for hsa-miR-561 from mirbase.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 5.907e-05 696 0.001826 23 microRNA targets for hsa-miR-26b from mirbase.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 6.931e-05 854 0.001942 24 microRNA targets for hsa-miR-200b from mirbase.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 7.289e-05 718 0.001942 24 microRNA targets for hsa-miR-26a from mirbase.targets www.mirbase.org...
Null hsa-miR-301b View Gene Set 6.641e-05 763 0.001942 24 microRNA targets for hsa-miR-301b from mirbase.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 7.551e-05 771 0.001942 24 microRNA targets for hsa-miR-320 from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-3p View Gene Set 7.648e-05 863 0.001942 24 microRNA targets for hsa-miR-548c-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-101 View Gene Set 8.441e-05 818 0.002069 29 microRNA targets for hsa-miR-101 from mirbase.targets www.mirbase.org...
Null hsa-miR-30a* View Gene Set 9.366e-05 726 0.002081 30 microRNA targets for hsa-miR-30a* from mirbase.targets www.mirbase.org...
Null hsa-miR-493* View Gene Set 9.152e-05 522 0.002081 30 microRNA targets for hsa-miR-493* from mirbase.targets www.mirbase.org...
Null hsa-miR-802 View Gene Set 8.846e-05 683 0.002081 30 microRNA targets for hsa-miR-802 from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 9.987e-05 818 0.002152 33 microRNA targets for hsa-miR-548b-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7e* View Gene Set 0.0001056 790 0.002208 34 microRNA targets for hsa-let-7e* from mirbase.targets www.mirbase.org...
Null hsa-miR-376a View Gene Set 0.0001139 746 0.002313 35 microRNA targets for hsa-miR-376a from mirbase.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 0.0001182 603 0.002334 36 microRNA targets for hsa-miR-570 from mirbase.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.0001253 809 0.002408 37 microRNA targets for hsa-miR-130b from mirbase.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.0001314 814 0.002458 38 microRNA targets for hsa-miR-338-5p from mirbase.targets www.mirbase.org...
Null hsa-let-7f-2* View Gene Set 0.0001384 820 0.002523 39 microRNA targets for hsa-let-7f-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-29b-1* View Gene Set 0.0001562 720 0.002557 40 microRNA targets for hsa-miR-29b-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-518b View Gene Set 0.0001527 883 0.002557 40 microRNA targets for hsa-miR-518b from mirbase.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.0001582 801 0.002557 40 microRNA targets for hsa-miR-548c-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-551b* View Gene Set 0.0001553 473 0.002557 40 microRNA targets for hsa-miR-551b* from mirbase.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 0.0001482 570 0.002557 40 microRNA targets for hsa-miR-9* from mirbase.targets www.mirbase.org...
Null hsa-miR-489 View Gene Set 0.0001652 763 0.002611 45 microRNA targets for hsa-miR-489 from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 0.0001715 978 0.002651 46 microRNA targets for hsa-miR-548d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.0001982 665 0.002999 47 microRNA targets for hsa-miR-522 from mirbase.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 0.0002038 792 0.003019 48 microRNA targets for hsa-miR-152 from mirbase.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.0002282 803 0.003244 49 microRNA targets for hsa-miR-19a from mirbase.targets www.mirbase.org...
Null hsa-miR-302d* View Gene Set 0.0002251 693 0.003244 49 microRNA targets for hsa-miR-302d* from mirbase.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 0.0002359 742 0.003289 51 microRNA targets for hsa-miR-590-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.0002547 724 0.003483 52 microRNA targets for hsa-miR-21 from mirbase.targets www.mirbase.org...
Null hsa-miR-936 View Gene Set 0.0003363 676 0.004511 53 microRNA targets for hsa-miR-936 from mirbase.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 0.0003514 763 0.004627 54 microRNA targets for hsa-miR-548a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.0003583 789 0.004631 55 microRNA targets for hsa-miR-19b from mirbase.targets www.mirbase.org...
Null hsa-miR-568 View Gene Set 0.0004116 649 0.005226 56 microRNA targets for hsa-miR-568 from mirbase.targets www.mirbase.org...
Null hsa-miR-616* View Gene Set 0.0004351 533 0.005428 57 microRNA targets for hsa-miR-616* from mirbase.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.0004652 795 0.005653 58 microRNA targets for hsa-miR-15b from mirbase.targets www.mirbase.org...
Null hsa-miR-454 View Gene Set 0.0004691 769 0.005653 58 microRNA targets for hsa-miR-454 from mirbase.targets www.mirbase.org...
Null hsa-miR-30d* View Gene Set 0.0005178 717 0.006136 60 microRNA targets for hsa-miR-30d* from mirbase.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.0005344 659 0.006182 61 microRNA targets for hsa-miR-1 from mirbase.targets www.mirbase.org...
Null hsa-miR-208b View Gene Set 0.0005478 678 0.006182 61 microRNA targets for hsa-miR-208b from mirbase.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.0005436 643 0.006182 61 microRNA targets for hsa-miR-381 from mirbase.targets www.mirbase.org...
Null hsa-miR-215 View Gene Set 0.0005764 724 0.006404 64 microRNA targets for hsa-miR-215 from mirbase.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.0006235 714 0.006569 65 microRNA targets for hsa-miR-195 from mirbase.targets www.mirbase.org...
Null hsa-miR-337-5p View Gene Set 0.0006212 795 0.006569 65 microRNA targets for hsa-miR-337-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.0006282 796 0.006569 65 microRNA targets for hsa-miR-495 from mirbase.targets www.mirbase.org...
Null hsa-miR-499-5p View Gene Set 0.0006034 761 0.006569 65 microRNA targets for hsa-miR-499-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-487a View Gene Set 0.0006493 689 0.006691 69 microRNA targets for hsa-miR-487a from mirbase.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.0006817 812 0.006914 70 microRNA targets for hsa-miR-141 from mirbase.targets www.mirbase.org...
Null hsa-miR-582-5p View Gene Set 0.0006904 759 0.006914 70 microRNA targets for hsa-miR-582-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-221 View Gene Set 0.0007305 783 0.006937 72 microRNA targets for hsa-miR-221 from mirbase.targets www.mirbase.org...
Null hsa-miR-301a View Gene Set 0.0007199 798 0.006937 72 microRNA targets for hsa-miR-301a from mirbase.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 0.0007112 756 0.006937 72 microRNA targets for hsa-miR-323-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.0007317 824 0.006937 72 microRNA targets for hsa-miR-455-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.0007432 817 0.006953 76 microRNA targets for hsa-miR-15a from mirbase.targets www.mirbase.org...
Null hsa-miR-194 View Gene Set 0.0007614 731 0.007031 77 microRNA targets for hsa-miR-194 from mirbase.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.0008276 848 0.007449 78 microRNA targets for hsa-miR-29b from mirbase.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 0.0008261 620 0.007449 78 microRNA targets for hsa-miR-607 from mirbase.targets www.mirbase.org...
Null hsa-miR-106a* View Gene Set 0.0009874 554 0.008776 80 microRNA targets for hsa-miR-106a* from mirbase.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.001001 750 0.008788 81 microRNA targets for hsa-miR-369-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-583 View Gene Set 0.001148 632 0.009956 82 microRNA targets for hsa-miR-583 from mirbase.targets www.mirbase.org...
Null hsa-miR-518a-3p View Gene Set 0.001267 925 0.01072 83 microRNA targets for hsa-miR-518a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.001253 629 0.01072 83 microRNA targets for hsa-miR-641 from mirbase.targets www.mirbase.org...
Null hsa-miR-524-3p View Gene Set 0.001344 791 0.01124 85 microRNA targets for hsa-miR-524-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-15b* View Gene Set 0.001426 587 0.01144 86 microRNA targets for hsa-miR-15b* from mirbase.targets www.mirbase.org...
Null hsa-miR-30e* View Gene Set 0.001422 696 0.01144 86 microRNA targets for hsa-miR-30e* from mirbase.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 0.001416 625 0.01144 86 microRNA targets for hsa-miR-569 from mirbase.targets www.mirbase.org...
Null hsa-miR-95 View Gene Set 0.001432 787 0.01144 86 microRNA targets for hsa-miR-95 from mirbase.targets www.mirbase.org...
Null hsa-miR-485-3p View Gene Set 0.001451 735 0.01146 90 microRNA targets for hsa-miR-485-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-30b View Gene Set 0.0016 807 0.0125 91 microRNA targets for hsa-miR-30b from mirbase.targets www.mirbase.org...
Null hsa-miR-518d-3p View Gene Set 0.001619 916 0.01251 92 microRNA targets for hsa-miR-518d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-518f View Gene Set 0.001648 948 0.0126 93 microRNA targets for hsa-miR-518f from mirbase.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 0.001705 699 0.01289 94 microRNA targets for hsa-miR-888 from mirbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.001785 780 0.01336 95 microRNA targets for hsa-miR-16 from mirbase.targets www.mirbase.org...
Null hsa-miR-411* View Gene Set 0.001817 541 0.01346 96 microRNA targets for hsa-miR-411* from mirbase.targets www.mirbase.org...
Null hsa-miR-505 View Gene Set 0.001847 690 0.01354 97 microRNA targets for hsa-miR-505 from mirbase.targets www.mirbase.org...
Null hsa-miR-768-3p View Gene Set 0.001936 770 0.01404 98 microRNA targets for hsa-miR-768-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 0.002088 793 0.01491 99 microRNA targets for hsa-miR-124 from mirbase.targets www.mirbase.org...
Null hsa-miR-496 View Gene Set 0.002097 640 0.01491 99 microRNA targets for hsa-miR-496 from mirbase.targets www.mirbase.org...
Null hsa-miR-376b View Gene Set 0.002183 779 0.01537 101 microRNA targets for hsa-miR-376b from mirbase.targets www.mirbase.org...
Null hsa-miR-369-5p View Gene Set 0.002239 778 0.0156 102 microRNA targets for hsa-miR-369-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-518e View Gene Set 0.00226 923 0.0156 102 microRNA targets for hsa-miR-518e from mirbase.targets www.mirbase.org...
Null hsa-miR-302a* View Gene Set 0.002345 644 0.01603 104 microRNA targets for hsa-miR-302a* from mirbase.targets www.mirbase.org...
Null hsa-miR-34b View Gene Set 0.002517 776 0.01668 105 microRNA targets for hsa-miR-34b from mirbase.targets www.mirbase.org...
Null hsa-miR-374b View Gene Set 0.002533 574 0.01668 105 microRNA targets for hsa-miR-374b from mirbase.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 0.002503 772 0.01668 105 microRNA targets for hsa-miR-424 from mirbase.targets www.mirbase.org...
Null hsa-miR-99a View Gene Set 0.002523 665 0.01668 105 microRNA targets for hsa-miR-99a from mirbase.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 0.002589 463 0.01689 109 microRNA targets for hsa-miR-559 from mirbase.targets www.mirbase.org...
Null hsa-miR-7 View Gene Set 0.002709 778 0.01751 110 microRNA targets for hsa-miR-7 from mirbase.targets www.mirbase.org...
Null hsa-miR-379* View Gene Set 0.002779 511 0.0178 111 microRNA targets for hsa-miR-379* from mirbase.targets www.mirbase.org...
Null hsa-miR-488 View Gene Set 0.002961 657 0.01876 112 microRNA targets for hsa-miR-488 from mirbase.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 0.002981 795 0.01876 112 microRNA targets for hsa-miR-548d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-100 View Gene Set 0.00308 674 0.0192 114 microRNA targets for hsa-miR-100 from mirbase.targets www.mirbase.org...
Null hsa-miR-10a* View Gene Set 0.003133 585 0.0192 114 microRNA targets for hsa-miR-10a* from mirbase.targets www.mirbase.org...
Null hsa-miR-7-1* View Gene Set 0.00312 524 0.0192 114 microRNA targets for hsa-miR-7-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-525-3p View Gene Set 0.003224 790 0.01959 117 microRNA targets for hsa-miR-525-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-382 View Gene Set 0.003416 714 0.02058 118 microRNA targets for hsa-miR-382 from mirbase.targets www.mirbase.org...
Null hsa-miR-509-3-5p View Gene Set 0.003459 710 0.02067 119 microRNA targets for hsa-miR-509-3-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 0.003523 908 0.02086 120 microRNA targets for hsa-miR-200a from mirbase.targets www.mirbase.org...
Null hsa-miR-22* View Gene Set 0.003551 631 0.02086 120 microRNA targets for hsa-miR-22* from mirbase.targets www.mirbase.org...
Null hsa-miR-649 View Gene Set 0.003644 712 0.02124 122 microRNA targets for hsa-miR-649 from mirbase.targets www.mirbase.org...
Null hsa-miR-103 View Gene Set 0.003684 750 0.0213 123 microRNA targets for hsa-miR-103 from mirbase.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 0.003788 705 0.02172 124 microRNA targets for hsa-miR-628-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-518a-5p View Gene Set 0.00382 885 0.02173 125 microRNA targets for hsa-miR-518a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.004007 832 0.02234 126 microRNA targets for hsa-miR-148b from mirbase.targets www.mirbase.org...
Null hsa-miR-371-5p View Gene Set 0.004014 779 0.02234 126 microRNA targets for hsa-miR-371-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.004054 805 0.02234 126 microRNA targets for hsa-miR-497 from mirbase.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.004045 739 0.02234 126 microRNA targets for hsa-miR-587 from mirbase.targets www.mirbase.org...
Null hsa-miR-200a* View Gene Set 0.004353 623 0.02381 130 microRNA targets for hsa-miR-200a* from mirbase.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.004439 736 0.02409 131 microRNA targets for hsa-miR-377 from mirbase.targets www.mirbase.org...
Null hsa-miR-144* View Gene Set 0.004586 446 0.02451 132 microRNA targets for hsa-miR-144* from mirbase.targets www.mirbase.org...
Null hsa-miR-190 View Gene Set 0.00457 668 0.02451 132 microRNA targets for hsa-miR-190 from mirbase.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.004712 807 0.02471 134 microRNA targets for hsa-miR-130a from mirbase.targets www.mirbase.org...
Null hsa-miR-212 View Gene Set 0.004716 803 0.02471 134 microRNA targets for hsa-miR-212 from mirbase.targets www.mirbase.org...
Null hsa-miR-598 View Gene Set 0.004726 720 0.02471 134 microRNA targets for hsa-miR-598 from mirbase.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.004833 832 0.02508 137 microRNA targets for hsa-miR-520d-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-548b-3p View Gene Set 0.00488 970 0.02514 138 microRNA targets for hsa-miR-548b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 0.005 704 0.02558 139 microRNA targets for hsa-miR-513-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 0.005466 755 0.02776 140 microRNA targets for hsa-miR-891b from mirbase.targets www.mirbase.org...
Null hsa-miR-562 View Gene Set 0.005721 697 0.02885 141 microRNA targets for hsa-miR-562 from mirbase.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 0.005852 707 0.0293 142 microRNA targets for hsa-miR-182 from mirbase.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 0.005932 713 0.02949 143 microRNA targets for hsa-miR-576-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.006041 800 0.02968 144 microRNA targets for hsa-miR-148a from mirbase.targets www.mirbase.org...
Null hsa-miR-450a View Gene Set 0.006052 787 0.02968 144 microRNA targets for hsa-miR-450a from mirbase.targets www.mirbase.org...
Null hsa-miR-509-5p View Gene Set 0.00621 716 0.03024 146 microRNA targets for hsa-miR-509-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.006529 707 0.03158 147 microRNA targets for hsa-miR-871 from mirbase.targets www.mirbase.org...
Null hsa-miR-298 View Gene Set 0.006622 716 0.03181 148 microRNA targets for hsa-miR-298 from mirbase.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.006691 745 0.03193 149 microRNA targets for hsa-miR-153 from mirbase.targets www.mirbase.org...
Null hsa-miR-138-2* View Gene Set 0.006946 615 0.03259 150 microRNA targets for hsa-miR-138-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-409-3p View Gene Set 0.006942 654 0.03259 150 microRNA targets for hsa-miR-409-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-411 View Gene Set 0.006968 696 0.03259 150 microRNA targets for hsa-miR-411 from mirbase.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.00717 828 0.03332 153 microRNA targets for hsa-miR-29a from mirbase.targets www.mirbase.org...
Null hsa-miR-888* View Gene Set 0.007985 572 0.03687 154 microRNA targets for hsa-miR-888* from mirbase.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.008123 767 0.03726 155 microRNA targets for hsa-miR-491-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-498 View Gene Set 0.008534 744 0.03889 156 microRNA targets for hsa-miR-498 from mirbase.targets www.mirbase.org...
Null hsa-let-7c* View Gene Set 0.008783 755 0.03943 157 microRNA targets for hsa-let-7c* from mirbase.targets www.mirbase.org...
Null hsa-miR-136* View Gene Set 0.008825 557 0.03943 157 microRNA targets for hsa-miR-136* from mirbase.targets www.mirbase.org...
Null hsa-miR-138-1* View Gene Set 0.008795 540 0.03943 157 microRNA targets for hsa-miR-138-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-190b View Gene Set 0.008873 666 0.03943 157 microRNA targets for hsa-miR-190b from mirbase.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.009034 852 0.0399 161 microRNA targets for hsa-miR-520d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-126* View Gene Set 0.009157 549 0.04016 162 microRNA targets for hsa-miR-126* from mirbase.targets www.mirbase.org...
Null hsa-miR-652 View Gene Set 0.009207 662 0.04016 162 microRNA targets for hsa-miR-652 from mirbase.targets www.mirbase.org...
Null hsa-miR-30d View Gene Set 0.009348 770 0.04053 164 microRNA targets for hsa-miR-30d from mirbase.targets www.mirbase.org...
Null hsa-miR-624 View Gene Set 0.01 613 0.04311 165 microRNA targets for hsa-miR-624 from mirbase.targets www.mirbase.org...
Null hsa-miR-130a* View Gene Set 0.01035 606 0.04435 166 microRNA targets for hsa-miR-130a* from mirbase.targets www.mirbase.org...
Null hsa-miR-26b* View Gene Set 0.01078 555 0.0459 167 microRNA targets for hsa-miR-26b* from mirbase.targets www.mirbase.org...
Null hsa-miR-374a* View Gene Set 0.0109 491 0.04604 168 microRNA targets for hsa-miR-374a* from mirbase.targets www.mirbase.org...
Null hsa-miR-499-3p View Gene Set 0.01094 718 0.04604 168 microRNA targets for hsa-miR-499-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 0.01129 765 0.04723 170 microRNA targets for hsa-miR-421 from mirbase.targets www.mirbase.org...
Null hsa-miR-367* View Gene Set 0.0119 490 0.04947 171 microRNA targets for hsa-miR-367* from mirbase.targets www.mirbase.org...

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-548c-3p View Gene Set 6.672e-10 1804 3.689e-07 1 microRNA targets for hsa-miR-548c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-3p View Gene Set 3.795e-09 1107 1.049e-06 2 microRNA targets for hsa-miR-548d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 1.584e-08 2046 2.919e-06 3 microRNA targets for hsa-miR-590-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-570 View Gene Set 1.361e-07 983 1.881e-05 4 microRNA targets for hsa-miR-570 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 1.752e-07 736 1.937e-05 5 microRNA targets for hsa-miR-106b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 3.263e-07 754 3.007e-05 6 microRNA targets for hsa-miR-20a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-545 View Gene Set 4.448e-07 600 3.514e-05 7 microRNA targets for hsa-miR-545 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-519d View Gene Set 8.464e-07 714 5.851e-05 8 microRNA targets for hsa-miR-519d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-106a View Gene Set 1.464e-06 781 8.889e-05 9 microRNA targets for hsa-miR-106a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 1.607e-06 775 8.889e-05 9 microRNA targets for hsa-miR-93 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 3.308e-06 875 0.000145 11 microRNA targets for hsa-miR-23b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-559 View Gene Set 3.409e-06 977 0.000145 11 microRNA targets for hsa-miR-559 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-607 View Gene Set 3.31e-06 1137 0.000145 11 microRNA targets for hsa-miR-607 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 4.833e-06 858 0.0001782 14 microRNA targets for hsa-miR-23a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 4.683e-06 1246 0.0001782 14 microRNA targets for hsa-miR-495 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 8.426e-06 432 0.0002875 16 microRNA targets for hsa-miR-124 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 8.838e-06 795 0.0002875 16 microRNA targets for hsa-miR-20b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-17 View Gene Set 1.355e-05 784 0.0004121 18 microRNA targets for hsa-miR-17 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-561 View Gene Set 1.416e-05 1193 0.0004121 18 microRNA targets for hsa-miR-561 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-384 View Gene Set 1.825e-05 251 0.0005046 20 microRNA targets for hsa-miR-384 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 2.434e-05 439 0.0006409 21 microRNA targets for hsa-miR-506 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-513-3p View Gene Set 2.658e-05 1119 0.0006681 22 microRNA targets for hsa-miR-513-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-524-5p View Gene Set 3.071e-05 862 0.0007383 23 microRNA targets for hsa-miR-524-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 3.366e-05 423 0.0007757 24 microRNA targets for hsa-miR-9 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548b-5p View Gene Set 3.614e-05 1157 0.0007994 25 microRNA targets for hsa-miR-548b-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-5p View Gene Set 3.815e-05 1120 0.0008114 26 microRNA targets for hsa-miR-548a-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-655 View Gene Set 4.059e-05 820 0.0008313 27 microRNA targets for hsa-miR-655 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-330-3p View Gene Set 4.373e-05 682 0.0008636 28 microRNA targets for hsa-miR-330-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 5.113e-05 283 0.0009749 29 microRNA targets for hsa-miR-935 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548d-5p View Gene Set 6.115e-05 1147 0.001127 30 microRNA targets for hsa-miR-548d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-641 View Gene Set 0.0001021 659 0.00171 31 microRNA targets for hsa-miR-641 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-888 View Gene Set 9.594e-05 450 0.00171 31 microRNA targets for hsa-miR-888 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 0.0001007 1362 0.00171 31 microRNA targets for hsa-miR-944 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548a-3p View Gene Set 0.0001189 900 0.001933 34 microRNA targets for hsa-miR-548a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.0001274 240 0.001958 35 microRNA targets for hsa-miR-183 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-5p View Gene Set 0.0001245 826 0.001958 35 microRNA targets for hsa-miR-520d-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-587 View Gene Set 0.0001413 590 0.002112 37 microRNA targets for hsa-miR-587 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-214 View Gene Set 0.0002159 332 0.003089 38 microRNA targets for hsa-miR-214 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-522 View Gene Set 0.0002235 618 0.003089 38 microRNA targets for hsa-miR-522 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-548c-5p View Gene Set 0.0002205 1151 0.003089 38 microRNA targets for hsa-miR-548c-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-200a View Gene Set 0.0003498 589 0.004718 41 microRNA targets for hsa-miR-200a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520c-3p View Gene Set 0.0003671 452 0.004833 42 microRNA targets for hsa-miR-520c-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520b View Gene Set 0.0004079 451 0.005246 43 microRNA targets for hsa-miR-520b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.000427 498 0.005366 44 microRNA targets for hsa-miR-26a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.0005426 493 0.006668 45 microRNA targets for hsa-miR-26b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.000582 574 0.006997 46 microRNA targets for hsa-miR-141 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520a-3p View Gene Set 0.0005994 468 0.007052 47 microRNA targets for hsa-miR-520a-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-323-3p View Gene Set 0.0006963 402 0.008022 48 microRNA targets for hsa-miR-323-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-217 View Gene Set 0.0008083 365 0.009123 49 microRNA targets for hsa-miR-217 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-216a View Gene Set 0.0008759 352 0.009538 50 microRNA targets for hsa-miR-216a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.0008797 435 0.009538 50 microRNA targets for hsa-miR-372 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-891b View Gene Set 0.000935 245 0.009943 52 microRNA targets for hsa-miR-891b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-377 View Gene Set 0.0009553 449 0.009967 53 microRNA targets for hsa-miR-377 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-936 View Gene Set 0.001036 215 0.01061 54 microRNA targets for hsa-miR-936 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-543 View Gene Set 0.00113 710 0.01136 55 microRNA targets for hsa-miR-543 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520d-3p View Gene Set 0.001177 456 0.01162 56 microRNA targets for hsa-miR-520d-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.00137 649 0.01329 57 microRNA targets for hsa-miR-144 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-411 View Gene Set 0.001446 130 0.01379 58 microRNA targets for hsa-miR-411 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520e View Gene Set 0.001497 443 0.01403 59 microRNA targets for hsa-miR-520e from mirtarget2.targets www.mirbase.org...
Null hsa-miR-606 View Gene Set 0.001557 282 0.01435 60 microRNA targets for hsa-miR-606 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-204 View Gene Set 0.001644 538 0.0149 61 microRNA targets for hsa-miR-204 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-500 View Gene Set 0.001737 378 0.0155 62 microRNA targets for hsa-miR-500 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19a View Gene Set 0.001805 539 0.01585 63 microRNA targets for hsa-miR-19a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181a View Gene Set 0.002105 879 0.01819 64 microRNA targets for hsa-miR-181a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-576-5p View Gene Set 0.002232 589 0.01899 65 microRNA targets for hsa-miR-576-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181c View Gene Set 0.002372 909 0.01974 66 microRNA targets for hsa-miR-181c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-624 View Gene Set 0.002391 253 0.01974 66 microRNA targets for hsa-miR-624 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-603 View Gene Set 0.002436 446 0.01981 68 microRNA targets for hsa-miR-603 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-659 View Gene Set 0.002542 247 0.02037 69 microRNA targets for hsa-miR-659 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-220b View Gene Set 0.002713 210 0.02115 70 microRNA targets for hsa-miR-220b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-338-5p View Gene Set 0.002716 948 0.02115 70 microRNA targets for hsa-miR-338-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181d View Gene Set 0.003009 882 0.0224 72 microRNA targets for hsa-miR-181d from mirtarget2.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 0.003014 1020 0.0224 72 microRNA targets for hsa-miR-186 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-299-5p View Gene Set 0.003049 163 0.0224 72 microRNA targets for hsa-miR-299-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302a View Gene Set 0.003105 382 0.0224 72 microRNA targets for hsa-miR-302a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-634 View Gene Set 0.00302 215 0.0224 72 microRNA targets for hsa-miR-634 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.003119 570 0.0224 72 microRNA targets for hsa-miR-871 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520g View Gene Set 0.003238 429 0.02295 78 microRNA targets for hsa-miR-520g from mirtarget2.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.003529 329 0.02409 79 microRNA targets for hsa-miR-148b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-373 View Gene Set 0.003497 404 0.02409 79 microRNA targets for hsa-miR-373 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-421 View Gene Set 0.003488 334 0.02409 79 microRNA targets for hsa-miR-421 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-181b View Gene Set 0.003824 887 0.02548 82 microRNA targets for hsa-miR-181b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 0.003801 322 0.02548 82 microRNA targets for hsa-miR-613 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-302c View Gene Set 0.00391 370 0.02574 84 microRNA targets for hsa-miR-302c from mirtarget2.targets www.mirbase.org...
Null hsa-miR-549 View Gene Set 0.004007 200 0.02607 85 microRNA targets for hsa-miR-549 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-491-3p View Gene Set 0.004063 283 0.02613 86 microRNA targets for hsa-miR-491-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-595 View Gene Set 0.004356 245 0.02769 87 microRNA targets for hsa-miR-595 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-19b View Gene Set 0.00449 536 0.02821 88 microRNA targets for hsa-miR-19b from mirtarget2.targets www.mirbase.org...
Null hsa-miR-651 View Gene Set 0.004598 250 0.02857 89 microRNA targets for hsa-miR-651 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-211 View Gene Set 0.004666 549 0.02867 90 microRNA targets for hsa-miR-211 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-154 View Gene Set 0.004871 233 0.0296 91 microRNA targets for hsa-miR-154 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-203 View Gene Set 0.005069 754 0.03047 92 microRNA targets for hsa-miR-203 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.005434 325 0.03223 93 microRNA targets for hsa-miR-148a from mirtarget2.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.005537 321 0.03223 93 microRNA targets for hsa-miR-361-5p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-629 View Gene Set 0.005525 187 0.03223 93 microRNA targets for hsa-miR-629 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 0.005695 337 0.03281 96 microRNA targets for hsa-miR-152 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-520h View Gene Set 0.006125 428 0.03492 97 microRNA targets for hsa-miR-520h from mirtarget2.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 0.006955 273 0.03924 98 microRNA targets for hsa-miR-873 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.007734 686 0.04317 99 microRNA targets for hsa-miR-369-3p from mirtarget2.targets www.mirbase.org...
Null hsa-miR-448 View Gene Set 0.007806 500 0.04317 99 microRNA targets for hsa-miR-448 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-544 View Gene Set 0.008302 484 0.04545 101 microRNA targets for hsa-miR-544 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.00876 491 0.04749 102 microRNA targets for hsa-miR-195 from mirtarget2.targets www.mirbase.org...
Null hsa-miR-380 View Gene Set 0.009177 496 0.04927 103 microRNA targets for hsa-miR-380 from mirtarget2.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-9 View Gene Set 2.158e-06 670 0.0003841 1 microRNA targets for hsa-miR-9 from pictar.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 2.122e-05 344 0.001352 2 microRNA targets for hsa-miR-152 from pictar.targets www.mirbase.org...
Null hsa-miR-186 View Gene Set 2.278e-05 441 0.001352 2 microRNA targets for hsa-miR-186 from pictar.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 4.921e-05 342 0.001777 4 microRNA targets for hsa-miR-148a from pictar.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 4.99e-05 341 0.001777 4 microRNA targets for hsa-miR-148b from pictar.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.0001195 465 0.003038 6 microRNA targets for hsa-miR-200b from pictar.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.0001195 465 0.003038 6 microRNA targets for hsa-miR-200c from pictar.targets www.mirbase.org...
Null hsa-miR-21 View Gene Set 0.0001427 146 0.003176 8 microRNA targets for hsa-miR-21 from pictar.targets www.mirbase.org...
Null hsa-miR-302b* View Gene Set 0.0002022 253 0.003999 9 microRNA targets for hsa-miR-302b* from pictar.targets www.mirbase.org...
Null hsa-miR-9* View Gene Set 0.0002304 306 0.004102 10 microRNA targets for hsa-miR-9* from pictar.targets www.mirbase.org...
Null hsa-miR-130b View Gene Set 0.0005726 497 0.00637 11 microRNA targets for hsa-miR-130b from pictar.targets www.mirbase.org...
Null hsa-miR-20a View Gene Set 0.0005287 611 0.00637 11 microRNA targets for hsa-miR-20a from pictar.targets www.mirbase.org...
Null hsa-miR-20b View Gene Set 0.0005659 601 0.00637 11 microRNA targets for hsa-miR-20b from pictar.targets www.mirbase.org...
Null hsa-miR-301 View Gene Set 0.0003976 492 0.00637 11 microRNA targets for hsa-miR-301 from pictar.targets www.mirbase.org...
Null hsa-miR-320 View Gene Set 0.0005246 405 0.00637 11 microRNA targets for hsa-miR-320 from pictar.targets www.mirbase.org...
Null hsa-miR-372 View Gene Set 0.0004512 608 0.00637 11 microRNA targets for hsa-miR-372 from pictar.targets www.mirbase.org...
Null hsa-miR-17-5p View Gene Set 0.0007668 602 0.008029 17 microRNA targets for hsa-miR-17-5p from pictar.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 0.000855 408 0.008455 18 microRNA targets for hsa-miR-1 from pictar.targets www.mirbase.org...
Null hsa-miR-106b View Gene Set 0.001102 613 0.01032 19 microRNA targets for hsa-miR-106b from pictar.targets www.mirbase.org...
Null hsa-miR-93 View Gene Set 0.001355 606 0.01206 20 microRNA targets for hsa-miR-93 from pictar.targets www.mirbase.org...
Null hsa-miR-130a View Gene Set 0.001779 517 0.01508 21 microRNA targets for hsa-miR-130a from pictar.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 0.002042 404 0.01652 22 microRNA targets for hsa-miR-206 from pictar.targets www.mirbase.org...
Null hsa-miR-182 View Gene Set 0.002525 552 0.01954 23 microRNA targets for hsa-miR-182 from pictar.targets www.mirbase.org...
Null hsa-miR-124a View Gene Set 0.00345 624 0.02559 24 microRNA targets for hsa-miR-124a from pictar.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.003864 501 0.02751 25 microRNA targets for hsa-miR-26a from pictar.targets www.mirbase.org...
Null hsa-miR-141 View Gene Set 0.004393 332 0.03007 26 microRNA targets for hsa-miR-141 from pictar.targets www.mirbase.org...
Null hsa-miR-199a* View Gene Set 0.004949 422 0.03146 27 microRNA targets for hsa-miR-199a* from pictar.targets www.mirbase.org...
Null hsa-miR-27b View Gene Set 0.004934 629 0.03146 27 microRNA targets for hsa-miR-27b from pictar.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.006478 508 0.03773 29 microRNA targets for hsa-miR-26b from pictar.targets www.mirbase.org...
Null hsa-miR-27a View Gene Set 0.006571 620 0.03773 29 microRNA targets for hsa-miR-27a from pictar.targets www.mirbase.org...
Null hsa-miR-369-3p View Gene Set 0.006205 335 0.03773 29 microRNA targets for hsa-miR-369-3p from pictar.targets www.mirbase.org...
Null hsa-miR-30a-3p View Gene Set 0.006994 230 0.0389 32 microRNA targets for hsa-miR-30a-3p from pictar.targets www.mirbase.org...
Null hsa-miR-143 View Gene Set 0.007772 177 0.04192 33 microRNA targets for hsa-miR-143 from pictar.targets www.mirbase.org...
Null hsa-miR-193b View Gene Set 0.008129 162 0.04256 34 microRNA targets for hsa-miR-193b from pictar.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.00868 337 0.04415 35 microRNA targets for hsa-miR-133b from pictar.targets www.mirbase.org...

Gene Set Collection: tarbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1 View Gene Set 4.699e-06 149 0.0002396 1 microRNA targets for hsa-miR-1 from tarbase.targets www.mirbase.org...
Null hsa-miR-124 View Gene Set 2.528e-05 133 0.0006446 2 microRNA targets for hsa-miR-124 from tarbase.targets www.mirbase.org...
Null hsa-let-7b View Gene Set 7.256e-05 83 0.001234 3 microRNA targets for hsa-let-7b from tarbase.targets www.mirbase.org...

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-124 View Gene Set 1.625e-07 1299 1.983e-05 1 microRNA targets for hsa-miR-124 from targetscan.targets www.mirbase.org...
Null hsa-miR-506 View Gene Set 1.625e-07 1299 1.983e-05 1 microRNA targets for hsa-miR-506 from targetscan.targets www.mirbase.org...
Null hsa-miR-9 View Gene Set 2.17e-06 936 0.0001765 3 microRNA targets for hsa-miR-9 from targetscan.targets www.mirbase.org...
Null hsa-miR-1 View Gene Set 6.992e-05 583 0.002844 4 microRNA targets for hsa-miR-1 from targetscan.targets www.mirbase.org...
Null hsa-miR-206 View Gene Set 6.992e-05 583 0.002844 4 microRNA targets for hsa-miR-206 from targetscan.targets www.mirbase.org...
Null hsa-miR-613 View Gene Set 6.992e-05 583 0.002844 4 microRNA targets for hsa-miR-613 from targetscan.targets www.mirbase.org...
Null hsa-miR-495 View Gene Set 0.0007884 570 0.02748 7 microRNA targets for hsa-miR-495 from targetscan.targets www.mirbase.org...
Null hsa-miR-590-3p View Gene Set 0.0009122 796 0.02782 8 microRNA targets for hsa-miR-590-3p from targetscan.targets www.mirbase.org...
Null hsa-miR-183 View Gene Set 0.001268 295 0.03093 9 microRNA targets for hsa-miR-183 from targetscan.targets www.mirbase.org...
Null hsa-miR-361-5p View Gene Set 0.001152 138 0.03093 9 microRNA targets for hsa-miR-361-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-1297 View Gene Set 0.003417 646 0.03506 11 microRNA targets for hsa-miR-1297 from targetscan.targets www.mirbase.org...
Null hsa-miR-139-5p View Gene Set 0.001763 248 0.03506 11 microRNA targets for hsa-miR-139-5p from targetscan.targets www.mirbase.org...
Null hsa-miR-144 View Gene Set 0.003741 647 0.03506 11 microRNA targets for hsa-miR-144 from targetscan.targets www.mirbase.org...
Null hsa-miR-148a View Gene Set 0.003248 536 0.03506 11 microRNA targets for hsa-miR-148a from targetscan.targets www.mirbase.org...
Null hsa-miR-148b View Gene Set 0.003248 536 0.03506 11 microRNA targets for hsa-miR-148b from targetscan.targets www.mirbase.org...
Null hsa-miR-152 View Gene Set 0.003248 536 0.03506 11 microRNA targets for hsa-miR-152 from targetscan.targets www.mirbase.org...
Null hsa-miR-15a View Gene Set 0.004167 965 0.03506 11 microRNA targets for hsa-miR-15a from targetscan.targets www.mirbase.org...
Null hsa-miR-15b View Gene Set 0.004167 965 0.03506 11 microRNA targets for hsa-miR-15b from targetscan.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.004167 965 0.03506 11 microRNA targets for hsa-miR-16 from targetscan.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.004167 965 0.03506 11 microRNA targets for hsa-miR-195 from targetscan.targets www.mirbase.org...
Null hsa-miR-26a View Gene Set 0.003417 646 0.03506 11 microRNA targets for hsa-miR-26a from targetscan.targets www.mirbase.org...
Null hsa-miR-26b View Gene Set 0.003417 646 0.03506 11 microRNA targets for hsa-miR-26b from targetscan.targets www.mirbase.org...
Null hsa-miR-320a View Gene Set 0.002566 539 0.03506 11 microRNA targets for hsa-miR-320a from targetscan.targets www.mirbase.org...
Null hsa-miR-320b View Gene Set 0.002566 539 0.03506 11 microRNA targets for hsa-miR-320b from targetscan.targets www.mirbase.org...
Null hsa-miR-320c View Gene Set 0.002566 539 0.03506 11 microRNA targets for hsa-miR-320c from targetscan.targets www.mirbase.org...
Null hsa-miR-320d View Gene Set 0.002566 539 0.03506 11 microRNA targets for hsa-miR-320d from targetscan.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.004081 963 0.03506 11 microRNA targets for hsa-miR-340 from targetscan.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 0.004167 965 0.03506 11 microRNA targets for hsa-miR-424 from targetscan.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.004167 965 0.03506 11 microRNA targets for hsa-miR-497 from targetscan.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 0.004777 502 0.0376 30 microRNA targets for hsa-miR-133a from targetscan.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.004777 502 0.0376 30 microRNA targets for hsa-miR-133b from targetscan.targets www.mirbase.org...
Null hsa-miR-23a View Gene Set 0.006479 838 0.04791 32 microRNA targets for hsa-miR-23a from targetscan.targets www.mirbase.org...
Null hsa-miR-23b View Gene Set 0.006479 838 0.04791 32 microRNA targets for hsa-miR-23b from targetscan.targets www.mirbase.org...
Null hsa-miR-411 View Gene Set 0.006774 64 0.04861 34 microRNA targets for hsa-miR-411 from targetscan.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 0.007377 638 0.05 35 microRNA targets for hsa-miR-300 from targetscan.targets www.mirbase.org...
Null hsa-miR-381 View Gene Set 0.007377 638 0.05 35 microRNA targets for hsa-miR-381 from targetscan.targets www.mirbase.org...

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=featureNames, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-106b View Gene Set 9.323e-07 257 0.0006423 1 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-106b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-20a View Gene Set 9.381e-07 268 0.0006423 1 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-20a from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-106b View Gene Set 5.159e-07 281 0.0006423 1 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-106b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181c View Gene Set 2.008e-06 120 0.0008248 4 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181c from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-20a View Gene Set 1.878e-06 290 0.0008248 4 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-20a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-93 View Gene Set 1.119e-05 258 0.003338 6 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-93 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-93 View Gene Set 1.137e-05 281 0.003338 6 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-93 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-323-3p View Gene Set 3.488e-05 73 0.005893 8 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-323-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-377 View Gene Set 3.045e-05 57 0.005893 8 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-377 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-545 View Gene Set 3.285e-05 60 0.005893 8 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-545 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-369-3p View Gene Set 2.882e-05 46 0.005893 8 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-369-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106b View Gene Set 3.572e-05 372 0.005893 8 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-519d View Gene Set 3.73e-05 360 0.005893 8 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-519d from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-361-5p View Gene Set 4.194e-05 39 0.006135 14 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-361-5p from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-369-3p View Gene Set 4.779e-05 37 0.006135 14 microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-369-3p from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-20b View Gene Set 4.569e-05 291 0.006135 14 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-20b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20a View Gene Set 6.006e-05 390 0.006854 17 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 5.883e-05 192 0.006854 17 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-152 View Gene Set 6.816e-05 110 0.007368 19 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-152 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-20b View Gene Set 7.625e-05 272 0.007831 20 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-20b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsIntersection.hsa-miR-155 View Gene Set 0.0001379 17 0.01349 21 microRNA targets for miranda.mirtarget2.tarbase.targetsIntersection.hsa-miR-155 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-130b View Gene Set 0.0001531 68 0.01429 22 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-130b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181a View Gene Set 0.000166 113 0.01483 23 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-655 View Gene Set 0.000186 96 0.01592 24 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-655 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-148a View Gene Set 0.0002297 59 0.01787 25 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-148a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106a View Gene Set 0.000235 389 0.01787 25 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-106a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-26a View Gene Set 0.0002345 211 0.01787 25 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-26a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-607 View Gene Set 0.0002549 80 0.0187 28 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-607 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-340 View Gene Set 0.0002664 69 0.01887 29 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-340 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-21 View Gene Set 0.000285 27 0.01908 30 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-21 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-93 View Gene Set 0.0002879 381 0.01908 30 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-93 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-376b View Gene Set 0.0003254 37 0.01966 32 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-376b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-148b View Gene Set 0.0003175 67 0.01966 32 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-148b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-26b View Gene Set 0.0003189 215 0.01966 32 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-26b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-148b View Gene Set 0.0003738 114 0.02194 35 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-148b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-522 View Gene Set 0.000428 61 0.02214 36 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-522 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-17 View Gene Set 0.0004166 384 0.02214 36 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-17 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20b View Gene Set 0.0004312 394 0.02214 36 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-20b from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-21 View Gene Set 0.0004232 21 0.02214 36 microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-21 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302a View Gene Set 0.0004216 93 0.02214 36 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-548b-3p View Gene Set 0.0004693 58 0.02351 41 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-548b-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-619 View Gene Set 0.0005038 19 0.02406 42 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-619 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 View Gene Set 0.000501 243 0.02406 42 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-369-3p View Gene Set 0.0005362 93 0.02465 44 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-369-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-9 View Gene Set 0.0005401 142 0.02465 44 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-148a View Gene Set 0.0005619 113 0.02509 46 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-148a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181b View Gene Set 0.0006044 119 0.02586 47 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-570 View Gene Set 0.0006015 50 0.02586 47 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-570 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-23b View Gene Set 0.0006441 70 0.027 49 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-23b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181d View Gene Set 0.0007092 122 0.02764 50 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-181d from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-582-3p View Gene Set 0.0006789 44 0.02764 50 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-582-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 View Gene Set 0.0006982 238 0.02764 50 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-506 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-200c View Gene Set 0.0007131 68 0.02764 50 microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-200c from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-130a View Gene Set 0.0008062 80 0.02847 54 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-130a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-374b View Gene Set 0.0007747 49 0.02847 54 microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-374b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 0.0008152 77 0.02847 54 microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-152 View Gene Set 0.0008178 157 0.02847 54 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-152 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-205 View Gene Set 0.0008014 90 0.02847 54 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-205 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-372 View Gene Set 0.0007558 108 0.02847 54 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-372 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-23a View Gene Set 0.0008542 120 0.02877 60 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-23a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-888 View Gene Set 0.0008685 63 0.02877 60 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-888 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.pictar.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 0.0008657 70 0.02877 60 microRNA targets for mirbase.pictar.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-200c View Gene Set 0.0009625 102 0.03095 63 microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-200c from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-152 View Gene Set 0.0009643 109 0.03095 63 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-152 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-130b View Gene Set 0.0009803 51 0.03098 65 microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-130b from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-21 View Gene Set 0.00101 26 0.03145 66 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-21 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-23b View Gene Set 0.001072 108 0.03238 67 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-23b from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-548a-3p View Gene Set 0.001063 107 0.03238 67 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-548a-3p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-202 View Gene Set 0.001094 32 0.03258 69 microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-202 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-183 View Gene Set 0.001161 38 0.03407 70 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-183 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 0.001205 148 0.03487 71 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 View Gene Set 0.001226 85 0.03497 72 microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-124 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-193b View Gene Set 0.001261 31 0.03517 73 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-193b from miRNAtargetIntersection www.mirbase.org...
Null pictar.tarbase.targetscan.targetsIntersection.hsa-miR-155 View Gene Set 0.001267 8 0.03517 73 microRNA targets for pictar.tarbase.targetscan.targetsIntersection.hsa-miR-155 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-148b View Gene Set 0.001364 162 0.03687 75 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-148b from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302d View Gene Set 0.001364 99 0.03687 75 microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-302d from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-338-5p View Gene Set 0.001467 134 0.03727 77 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-338-5p from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-148a View Gene Set 0.001439 161 0.03727 77 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-148a from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-495 View Gene Set 0.00147 194 0.03727 77 microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-495 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-9 View Gene Set 0.001445 315 0.03727 77 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-9 from miRNAtargetIntersection www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsIntersection.hsa-miR-155 View Gene Set 0.001408 12 0.03727 77 microRNA targets for mirtarget2.tarbase.targetscan.targetsIntersection.hsa-miR-155 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-558 View Gene Set 0.001513 15 0.0379 82 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-558 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-186 View Gene Set 0.001588 117 0.0393 83 microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-186 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-211 View Gene Set 0.00163 45 0.03938 84 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-211 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-500 View Gene Set 0.001612 43 0.03938 84 microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-500 from miRNAtargetIntersection www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-153 View Gene Set 0.001787 59 0.04267 86 microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-153 from miRNAtargetIntersection www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-21 View Gene Set 0.001811 57 0.04275 87 microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-21 from miRNAtargetIntersection www.mirbase.org...