AFA results for: tVPAda2DU

JumpToCollection
Go to: Gene Set Collection: KEGG
Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.BIOCARTA
Go to: Gene Set Collection: Broad.c2.CP.KEGG
Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c3.TFT
Go to: Gene Set Collection: Broad.c4.CGN
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: Broad.c5.CC
Go to: Gene Set Collection: Broad.c5.MF
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: Enzyme
Go to: Gene Set Collection: ppi.BIND
Go to: Gene Set Collection: ppi.BioGRID
Go to: Gene Set Collection: ppi.HPRD
Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.cell-map
Go to: Gene Set Collection: pathwayCommons.nci-nature
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: mirbase.targets
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: hprdBatch.UP
Go to: Gene Set Collection: hprdBatch.DIFFERENT
Go to: Gene Set Collection: hprdManual.UP

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
KEGG 03040	View Gene Set	1.215e-22	128	2.601e-20	1	Spliceosome	www.genome.jp/d...
KEGG 04110	View Gene Set	2.883e-09	128	3.085e-07	2	Cell cycle	www.genome.jp/d...
KEGG 03050	View Gene Set	1.585e-07	48	1.13e-05	3	Proteasome	www.genome.jp/d...
KEGG 00240	View Gene Set	1.368e-06	99	6.762e-05	4	Pyrimidine metabolism	www.genome.jp/d...
KEGG 03018	View Gene Set	1.58e-06	59	6.762e-05	4	RNA degradation	www.genome.jp/d...
KEGG 03030	View Gene Set	2.28e-06	36	8.132e-05	6	DNA replication	www.genome.jp/d...
KEGG 00970	View Gene Set	1.077e-05	41	0.0003292	7	Aminoacyl-tRNA biosynthesis	www.genome.jp/d...
KEGG 03430	View Gene Set	5.145e-05	23	0.001223	8	Mismatch repair	www.genome.jp/d...
KEGG 04740	View Gene Set	4.785e-05	388	0.001223	8	Olfactory transduction	www.genome.jp/d...
KEGG 03440	View Gene Set	6.087e-05	28	0.001303	10	Homologous recombination	www.genome.jp/d...
KEGG 03410	View Gene Set	8.025e-05	34	0.001561	11	Base excision repair	www.genome.jp/d...
KEGG 03010	View Gene Set	0.0003302	88	0.005889	12	Ribosome	www.genome.jp/d...
KEGG 00670	View Gene Set	0.0006498	17	0.0107	13	One carbon pool by folate	www.genome.jp/d...
KEGG 03420	View Gene Set	0.002296	44	0.03509	14	Nucleotide excision repair	www.genome.jp/d...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
GO GO:0044428	View Gene Set	7.431e-88	1938	9.928e-84	1	nuclear part	amigo.geneontol...
GO GO:0005634	View Gene Set	3.429e-76	5198	2.291e-72	2	nucleus	amigo.geneontol...
GO GO:0031981	View Gene Set	1.18e-73	1518	5.253e-70	3	nuclear lumen	amigo.geneontol...
GO GO:0070013	View Gene Set	7.162e-67	1845	2.392e-63	4	intracellular organelle lumen	amigo.geneontol...
GO GO:0043233	View Gene Set	1.76e-64	1881	4.702e-61	5	organelle lumen	amigo.geneontol...
GO GO:0031974	View Gene Set	5.065e-64	1917	1.049e-60	6	membrane-enclosed lumen	amigo.geneontol...
GO GO:0003676	View Gene Set	5.499e-64	2979	1.049e-60	6	nucleic acid binding	amigo.geneontol...
GO GO:0006396	View Gene Set	3.557e-63	578	5.941e-60	8	RNA processing	amigo.geneontol...
GO GO:0090304	View Gene Set	3.786e-62	3724	5.62e-59	9	nucleic acid metabolic process	amigo.geneontol...
GO GO:0006139	View Gene Set	1.92e-54	4294	2.565e-51	10	nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0003723	View Gene Set	1.385e-53	732	1.683e-50	11	RNA binding	amigo.geneontol...
GO GO:0010467	View Gene Set	8.766e-53	3806	9.218e-50	12	gene expression	amigo.geneontol...
GO GO:0034641	View Gene Set	8.97e-53	4584	9.218e-50	12	cellular nitrogen compound metabolic process	amigo.geneontol...
GO GO:0006807	View Gene Set	9.008e-49	4698	8.596e-46	14	nitrogen compound metabolic process	amigo.geneontol...
GO GO:0030529	View Gene Set	1.268e-48	504	1.129e-45	15	ribonucleoprotein complex	amigo.geneontol...
GO GO:0044260	View Gene Set	2.481e-48	5699	2.071e-45	16	cellular macromolecule metabolic process	amigo.geneontol...
GO GO:0016070	View Gene Set	2.127e-43	2596	1.671e-40	17	RNA metabolic process	amigo.geneontol...
GO GO:0005730	View Gene Set	6.696e-43	734	4.97e-40	18	nucleolus	amigo.geneontol...
GO GO:0008380	View Gene Set	7.829e-42	300	5.505e-39	19	RNA splicing	amigo.geneontol...
GO GO:0005654	View Gene Set	8.485e-42	939	5.668e-39	20	nucleoplasm	amigo.geneontol...
GO GO:0043170	View Gene Set	2.329e-40	6274	1.482e-37	21	macromolecule metabolic process	amigo.geneontol...
GO GO:0016071	View Gene Set	3.903e-39	381	2.37e-36	22	mRNA metabolic process	amigo.geneontol...
GO GO:0006397	View Gene Set	5.247e-35	317	2.943e-32	23	mRNA processing	amigo.geneontol...
GO GO:0022613	View Gene Set	5.287e-35	194	2.943e-32	23	ribonucleoprotein complex biogenesis	amigo.geneontol...
GO GO:0043228	View Gene Set	3.402e-34	2690	1.748e-31	25	non-membrane-bounded organelle	amigo.geneontol...
GO GO:0043232	View Gene Set	3.402e-34	2690	1.748e-31	25	intracellular non-membrane-bounded organelle	amigo.geneontol...
GO GO:0009059	View Gene Set	1.682e-31	3597	8.323e-29	27	macromolecule biosynthetic process	amigo.geneontol...
GO GO:0034645	View Gene Set	6.214e-31	3529	2.965e-28	28	cellular macromolecule biosynthetic process	amigo.geneontol...
GO GO:0005694	View Gene Set	4.078e-30	507	1.879e-27	29	chromosome	amigo.geneontol...
GO GO:0044451	View Gene Set	1.555e-27	600	6.923e-25	30	nucleoplasm part	amigo.geneontol...
GO GO:0034660	View Gene Set	1.111e-26	236	4.788e-24	31	ncRNA metabolic process	amigo.geneontol...
GO GO:0042254	View Gene Set	2.162e-26	130	9.026e-24	32	ribosome biogenesis	amigo.geneontol...
GO GO:0044249	View Gene Set	4.082e-26	4326	1.652e-23	33	cellular biosynthetic process	amigo.geneontol...
GO GO:0032991	View Gene Set	9.556e-26	3237	3.755e-23	34	macromolecular complex	amigo.geneontol...
GO GO:0009058	View Gene Set	2.683e-25	4436	1.024e-22	35	biosynthetic process	amigo.geneontol...
GO GO:0044427	View Gene Set	3.415e-25	420	1.267e-22	36	chromosomal part	amigo.geneontol...
GO GO:0022402	View Gene Set	1.869e-24	676	6.75e-22	37	cell cycle process	amigo.geneontol...
GO GO:0005681	View Gene Set	2.912e-24	135	1.024e-21	38	spliceosomal complex	amigo.geneontol...
GO GO:0044237	View Gene Set	4.385e-24	7431	1.502e-21	39	cellular metabolic process	amigo.geneontol...
GO GO:0034470	View Gene Set	5.304e-24	193	1.771e-21	40	ncRNA processing	amigo.geneontol...
GO GO:0044238	View Gene Set	5.918e-24	7629	1.928e-21	41	primary metabolic process	amigo.geneontol...
GO GO:0000279	View Gene Set	2.358e-23	406	7.499e-21	42	M phase	amigo.geneontol...
GO GO:0000775	View Gene Set	3.066e-22	146	9.526e-20	43	chromosome centromeric region	amigo.geneontol...
GO GO:0007049	View Gene Set	5.871e-22	1006	1.783e-19	44	cell cycle	amigo.geneontol...
GO GO:0000375	View Gene Set	8.368e-22	106	2.484e-19	45	RNA splicing via transesterification reactions	amigo.geneontol...
GO GO:0000278	View Gene Set	9.613e-22	489	2.792e-19	46	mitotic cell cycle	amigo.geneontol...
GO GO:0000793	View Gene Set	1.609e-21	136	4.573e-19	47	condensed chromosome	amigo.geneontol...
GO GO:0022403	View Gene Set	2.587e-21	522	7.201e-19	48	cell cycle phase	amigo.geneontol...
GO GO:0051276	View Gene Set	2.721e-21	548	7.42e-19	49	chromosome organization	amigo.geneontol...
GO GO:0003677	View Gene Set	7.644e-21	2028	2.042e-18	50	DNA binding	amigo.geneontol...
GO GO:0016072	View Gene Set	3.014e-20	101	7.896e-18	51	rRNA metabolic process	amigo.geneontol...
GO GO:0006412	View Gene Set	3.076e-20	412	7.902e-18	52	translation	amigo.geneontol...
GO GO:0000377	View Gene Set	1.135e-19	97	2.808e-17	53	RNA splicing via transesterification reactions with bulged adenosine as nucleophile	amigo.geneontol...
GO GO:0000398	View Gene Set	1.135e-19	97	2.808e-17	53	nuclear mRNA splicing via spliceosome	amigo.geneontol...
GO GO:0006364	View Gene Set	2.421e-19	97	5.88e-17	55	rRNA processing	amigo.geneontol...
GO GO:0000087	View Gene Set	4.766e-19	286	1.137e-16	56	M phase of mitotic cell cycle	amigo.geneontol...
GO GO:0000280	View Gene Set	6.374e-19	276	1.468e-16	57	nuclear division	amigo.geneontol...
GO GO:0007067	View Gene Set	6.374e-19	276	1.468e-16	57	mitosis	amigo.geneontol...
GO GO:0007059	View Gene Set	1.59e-18	94	3.6e-16	59	chromosome segregation	amigo.geneontol...
GO GO:0048285	View Gene Set	1.687e-18	286	3.757e-16	60	organelle fission	amigo.geneontol...
GO GO:0006259	View Gene Set	6.079e-18	592	1.331e-15	61	DNA metabolic process	amigo.geneontol...
GO GO:0000776	View Gene Set	2.433e-17	92	5.242e-15	62	kinetochore	amigo.geneontol...
GO GO:0043227	View Gene Set	4.225e-17	8383	8.961e-15	63	membrane-bounded organelle	amigo.geneontol...
GO GO:0060255	View Gene Set	6.725e-17	3411	1.404e-14	64	regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0043231	View Gene Set	7.166e-17	8376	1.473e-14	65	intracellular membrane-bounded organelle	amigo.geneontol...
GO GO:0008152	View Gene Set	1.205e-16	8439	2.44e-14	66	metabolic process	amigo.geneontol...
GO GO:0010556	View Gene Set	4.384e-16	2901	8.743e-14	67	regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0016604	View Gene Set	5.233e-16	198	1.028e-13	68	nuclear body	amigo.geneontol...
GO GO:0006350	View Gene Set	6.311e-16	2744	1.222e-13	69	transcription	amigo.geneontol...
GO GO:0031326	View Gene Set	1.926e-15	3048	3.676e-13	70	regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0010468	View Gene Set	2.902e-15	2958	5.461e-13	71	regulation of gene expression	amigo.geneontol...
GO GO:0009889	View Gene Set	3.438e-15	3070	6.379e-13	72	regulation of biosynthetic process	amigo.geneontol...
GO GO:0006260	View Gene Set	6.37e-15	239	1.166e-12	73	DNA replication	amigo.geneontol...
GO GO:0000777	View Gene Set	8.275e-15	74	1.494e-12	74	condensed chromosome kinetochore	amigo.geneontol...
GO GO:0050657	View Gene Set	9.114e-15	102	1.581e-12	75	nucleic acid transport	amigo.geneontol...
GO GO:0050658	View Gene Set	9.114e-15	102	1.581e-12	75	RNA transport	amigo.geneontol...
GO GO:0051236	View Gene Set	9.114e-15	102	1.581e-12	75	establishment of RNA localization	amigo.geneontol...
GO GO:0044446	View Gene Set	1.509e-14	5019	2.585e-12	78	intracellular organelle part	amigo.geneontol...
GO GO:0000779	View Gene Set	1.846e-14	79	3.122e-12	79	condensed chromosome centromeric region	amigo.geneontol...
GO GO:0006403	View Gene Set	1.988e-14	104	3.32e-12	80	RNA localization	amigo.geneontol...
GO GO:0015931	View Gene Set	2.31e-14	118	3.811e-12	81	nucleobase nucleoside nucleotide and nucleic acid transport	amigo.geneontol...
GO GO:0005819	View Gene Set	3.662e-14	167	5.967e-12	82	spindle	amigo.geneontol...
GO GO:0044422	View Gene Set	4.764e-14	5089	7.668e-12	83	organelle part	amigo.geneontol...
GO GO:0043229	View Gene Set	6.358e-14	9346	1.011e-11	84	intracellular organelle	amigo.geneontol...
GO GO:0000166	View Gene Set	6.646e-14	2257	1.045e-11	85	nucleotide binding	amigo.geneontol...
GO GO:0005840	View Gene Set	7.745e-14	198	1.203e-11	86	ribosome	amigo.geneontol...
GO GO:0080090	View Gene Set	9.477e-14	3585	1.455e-11	87	regulation of primary metabolic process	amigo.geneontol...
GO GO:0043226	View Gene Set	1.15e-13	9360	1.746e-11	88	organelle	amigo.geneontol...
GO GO:0022618	View Gene Set	1.461e-13	76	2.193e-11	89	ribonucleoprotein complex assembly	amigo.geneontol...
GO GO:0000819	View Gene Set	2.731e-13	38	4.055e-11	90	sister chromatid segregation	amigo.geneontol...
GO GO:0051171	View Gene Set	3.012e-13	3066	4.422e-11	91	regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0019219	View Gene Set	4.272e-13	3040	6.204e-11	92	regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0006974	View Gene Set	4.391e-13	412	6.241e-11	93	response to DNA damage stimulus	amigo.geneontol...
GO GO:0034621	View Gene Set	4.345e-13	458	6.241e-11	93	cellular macromolecular complex subunit organization	amigo.geneontol...
GO GO:0000070	View Gene Set	5.601e-13	37	7.876e-11	95	mitotic sister chromatid segregation	amigo.geneontol...
GO GO:0044085	View Gene Set	7.523e-13	1167	1.047e-10	96	cellular component biogenesis	amigo.geneontol...
GO GO:0006281	View Gene Set	7.822e-13	309	1.074e-10	97	DNA repair	amigo.geneontol...
GO GO:0034622	View Gene Set	7.878e-13	393	1.074e-10	97	cellular macromolecular complex assembly	amigo.geneontol...
GO GO:0006996	View Gene Set	9.867e-13	1501	1.331e-10	99	organelle organization	amigo.geneontol...
GO GO:0045449	View Gene Set	1.148e-12	2647	1.533e-10	100	regulation of transcription	amigo.geneontol...
GO GO:0031323	View Gene Set	1.446e-12	3768	1.913e-10	101	regulation of cellular metabolic process	amigo.geneontol...
GO GO:0007051	View Gene Set	1.625e-12	57	2.128e-10	102	spindle organization	amigo.geneontol...
GO GO:0071103	View Gene Set	4.444e-12	140	5.764e-10	103	DNA conformation change	amigo.geneontol...
GO GO:0051028	View Gene Set	5.407e-12	90	6.945e-10	104	mRNA transport	amigo.geneontol...
GO GO:0051301	View Gene Set	6.197e-12	358	7.884e-10	105	cell division	amigo.geneontol...
GO GO:0019222	View Gene Set	2.455e-11	4060	3.094e-09	106	regulation of metabolic process	amigo.geneontol...
GO GO:0003735	View Gene Set	3.696e-11	158	4.615e-09	107	structural constituent of ribosome	amigo.geneontol...
GO GO:0005524	View Gene Set	4.343e-11	1480	5.373e-09	108	ATP binding	amigo.geneontol...
GO GO:0006325	View Gene Set	4.541e-11	425	5.566e-09	109	chromatin organization	amigo.geneontol...
GO GO:0006399	View Gene Set	4.739e-11	118	5.756e-09	110	tRNA metabolic process	amigo.geneontol...
GO GO:0032559	View Gene Set	9.16e-11	1503	1.103e-08	111	adenyl ribonucleotide binding	amigo.geneontol...
GO GO:0031145	View Gene Set	9.376e-11	64	1.118e-08	112	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	amigo.geneontol...
GO GO:0033279	View Gene Set	1.005e-10	121	1.188e-08	113	ribosomal subunit	amigo.geneontol...
GO GO:0030554	View Gene Set	1.62e-10	1584	1.898e-08	114	adenyl nucleotide binding	amigo.geneontol...
GO GO:0051439	View Gene Set	1.68e-10	68	1.952e-08	115	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0000228	View Gene Set	1.992e-10	177	2.294e-08	116	nuclear chromosome	amigo.geneontol...
GO GO:0016607	View Gene Set	2.857e-10	116	3.262e-08	117	nuclear speck	amigo.geneontol...
GO GO:0051436	View Gene Set	3.763e-10	62	4.26e-08	118	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0005643	View Gene Set	5.642e-10	71	6.335e-08	119	nuclear pore	amigo.geneontol...
GO GO:0008026	View Gene Set	6.59e-10	105	7.277e-08	120	ATP-dependent helicase activity	amigo.geneontol...
GO GO:0070035	View Gene Set	6.59e-10	105	7.277e-08	120	purine NTP-dependent helicase activity	amigo.geneontol...
GO GO:0051168	View Gene Set	7.305e-10	71	8e-08	122	nuclear export	amigo.geneontol...
GO GO:0051352	View Gene Set	8.892e-10	66	9.581e-08	123	negative regulation of ligase activity	amigo.geneontol...
GO GO:0051444	View Gene Set	8.892e-10	66	9.581e-08	123	negative regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0031397	View Gene Set	9.023e-10	78	9.644e-08	125	negative regulation of protein ubiquitination	amigo.geneontol...
GO GO:0051437	View Gene Set	1.022e-09	64	1.083e-07	126	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0005488	View Gene Set	1.231e-09	12334	1.295e-07	127	binding	amigo.geneontol...
GO GO:0006323	View Gene Set	1.354e-09	119	1.414e-07	128	DNA packaging	amigo.geneontol...
GO GO:0046930	View Gene Set	1.553e-09	85	1.609e-07	129	pore complex	amigo.geneontol...
GO GO:0006261	View Gene Set	1.832e-09	74	1.883e-07	130	DNA-dependent DNA replication	amigo.geneontol...
GO GO:0008135	View Gene Set	1.882e-09	86	1.92e-07	131	translation factor activity nucleic acid binding	amigo.geneontol...
GO GO:0003743	View Gene Set	2.052e-09	52	2.077e-07	132	translation initiation factor activity	amigo.geneontol...
GO GO:0051340	View Gene Set	2.196e-09	85	2.206e-07	133	regulation of ligase activity	amigo.geneontol...
GO GO:0051438	View Gene Set	2.431e-09	82	2.424e-07	134	regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0004386	View Gene Set	3.267e-09	144	3.233e-07	135	helicase activity	amigo.geneontol...
GO GO:0044424	View Gene Set	3.608e-09	10976	3.545e-07	136	intracellular part	amigo.geneontol...
GO GO:0000502	View Gene Set	3.894e-09	63	3.797e-07	137	proteasome complex	amigo.geneontol...
GO GO:0000785	View Gene Set	4.115e-09	213	3.984e-07	138	chromatin	amigo.geneontol...
GO GO:0051351	View Gene Set	4.163e-09	74	4.001e-07	139	positive regulation of ligase activity	amigo.geneontol...
GO GO:0051443	View Gene Set	4.468e-09	71	4.264e-07	140	positive regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0000226	View Gene Set	5.735e-09	178	5.434e-07	141	microtubule cytoskeleton organization	amigo.geneontol...
GO GO:0015030	View Gene Set	5.945e-09	43	5.594e-07	142	Cajal body	amigo.geneontol...
GO GO:0001882	View Gene Set	7.071e-09	1630	6.606e-07	143	nucleoside binding	amigo.geneontol...
GO GO:0000922	View Gene Set	1.017e-08	63	9.435e-07	144	spindle pole	amigo.geneontol...
GO GO:0006405	View Gene Set	1.204e-08	44	1.109e-06	145	RNA export from nucleus	amigo.geneontol...
GO GO:0065003	View Gene Set	1.257e-08	763	1.15e-06	146	macromolecular complex assembly	amigo.geneontol...
GO GO:0001883	View Gene Set	1.301e-08	1620	1.183e-06	147	purine nucleoside binding	amigo.geneontol...
GO GO:0006351	View Gene Set	1.712e-08	1949	1.545e-06	148	transcription DNA-dependent	amigo.geneontol...
GO GO:0050000	View Gene Set	2.098e-08	17	1.869e-06	149	chromosome localization	amigo.geneontol...
GO GO:0051303	View Gene Set	2.098e-08	17	1.869e-06	149	establishment of chromosome localization	amigo.geneontol...
GO GO:0043933	View Gene Set	2.339e-08	836	2.069e-06	151	macromolecular complex subunit organization	amigo.geneontol...
GO GO:0032774	View Gene Set	2.376e-08	1953	2.074e-06	152	RNA biosynthetic process	amigo.geneontol...
GO GO:0000794	View Gene Set	2.37e-08	52	2.074e-06	152	condensed nuclear chromosome	amigo.geneontol...
GO GO:0005876	View Gene Set	2.463e-08	35	2.137e-06	154	spindle microtubule	amigo.geneontol...
GO GO:0016568	View Gene Set	2.527e-08	324	2.178e-06	155	chromatin modification	amigo.geneontol...
GO GO:0003697	View Gene Set	2.635e-08	58	2.257e-06	156	single-stranded DNA binding	amigo.geneontol...
GO GO:0044452	View Gene Set	2.913e-08	28	2.478e-06	157	nucleolar part	amigo.geneontol...
GO GO:0030532	View Gene Set	4.34e-08	32	3.669e-06	158	small nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0000387	View Gene Set	8.8e-08	31	7.395e-06	159	spliceosomal snRNP assembly	amigo.geneontol...
GO GO:0008033	View Gene Set	9.659e-08	78	8.065e-06	160	tRNA processing	amigo.geneontol...
GO GO:0005622	View Gene Set	1.016e-07	11329	8.433e-06	161	intracellular	amigo.geneontol...
GO GO:0051321	View Gene Set	1.567e-07	115	1.292e-05	162	meiotic cell cycle	amigo.geneontol...
GO GO:0051310	View Gene Set	2.374e-07	13	1.946e-05	163	metaphase plate congression	amigo.geneontol...
GO GO:0006401	View Gene Set	2.575e-07	74	2.096e-05	164	RNA catabolic process	amigo.geneontol...
GO GO:0007126	View Gene Set	2.604e-07	113	2.096e-05	164	meiosis	amigo.geneontol...
GO GO:0051327	View Gene Set	2.604e-07	113	2.096e-05	164	M phase of meiotic cell cycle	amigo.geneontol...
GO GO:0004518	View Gene Set	2.772e-07	161	2.198e-05	167	nuclease activity	amigo.geneontol...
GO GO:0032553	View Gene Set	2.781e-07	1851	2.198e-05	167	ribonucleotide binding	amigo.geneontol...
GO GO:0032555	View Gene Set	2.781e-07	1851	2.198e-05	167	purine ribonucleotide binding	amigo.geneontol...
GO GO:0000075	View Gene Set	2.956e-07	109	2.323e-05	170	cell cycle checkpoint	amigo.geneontol...
GO GO:0043566	View Gene Set	3.176e-07	149	2.481e-05	171	structure-specific DNA binding	amigo.geneontol...
GO GO:0016741	View Gene Set	3.442e-07	179	2.674e-05	172	transferase activity transferring one-carbon groups	amigo.geneontol...
GO GO:0008168	View Gene Set	4.054e-07	176	3.131e-05	173	methyltransferase activity	amigo.geneontol...
GO GO:0017076	View Gene Set	4.9e-07	1934	3.763e-05	174	purine nucleotide binding	amigo.geneontol...
GO GO:0033554	View Gene Set	4.942e-07	698	3.773e-05	175	cellular response to stress	amigo.geneontol...
GO GO:0006366	View Gene Set	6.26e-07	919	4.752e-05	176	transcription from RNA polymerase II promoter	amigo.geneontol...
GO GO:0000184	View Gene Set	6.733e-07	30	5.082e-05	177	nuclear-transcribed mRNA catabolic process nonsense-mediated decay	amigo.geneontol...
GO GO:0007606	View Gene Set	6.825e-07	478	5.123e-05	178	sensory perception of chemical stimulus	amigo.geneontol...
GO GO:0005515	View Gene Set	6.959e-07	8146	5.194e-05	179	protein binding	amigo.geneontol...
GO GO:0008408	View Gene Set	7.575e-07	27	5.623e-05	180	3'-5' exonuclease activity	amigo.geneontol...
GO GO:0031396	View Gene Set	7.895e-07	121	5.827e-05	181	regulation of protein ubiquitination	amigo.geneontol...
GO GO:0000313	View Gene Set	9.961e-07	49	7.272e-05	182	organellar ribosome	amigo.geneontol...
GO GO:0005761	View Gene Set	9.961e-07	49	7.272e-05	182	mitochondrial ribosome	amigo.geneontol...
GO GO:0044454	View Gene Set	1.059e-06	139	7.689e-05	184	nuclear chromosome part	amigo.geneontol...
GO GO:0006413	View Gene Set	1.241e-06	62	8.962e-05	185	translational initiation	amigo.geneontol...
GO GO:0004527	View Gene Set	1.345e-06	57	9.663e-05	186	exonuclease activity	amigo.geneontol...
GO GO:0000940	View Gene Set	1.367e-06	12	9.767e-05	187	outer kinetochore of condensed chromosome	amigo.geneontol...
GO GO:0006333	View Gene Set	1.378e-06	129	9.79e-05	188	chromatin assembly or disassembly	amigo.geneontol...
GO GO:0003678	View Gene Set	1.412e-06	44	9.984e-05	189	DNA helicase activity	amigo.geneontol...
GO GO:0006310	View Gene Set	1.425e-06	130	0.0001002	190	DNA recombination	amigo.geneontol...
GO GO:0044265	View Gene Set	1.708e-06	479	0.0001194	191	cellular macromolecule catabolic process	amigo.geneontol...
GO GO:0043234	View Gene Set	1.777e-06	2680	0.0001236	192	protein complex	amigo.geneontol...
GO GO:0031023	View Gene Set	1.813e-06	41	0.0001252	193	microtubule organizing center organization	amigo.geneontol...
GO GO:0043021	View Gene Set	1.818e-06	39	0.0001252	193	ribonucleoprotein binding	amigo.geneontol...
GO GO:0004984	View Gene Set	1.9e-06	419	0.0001302	195	olfactory receptor activity	amigo.geneontol...
GO GO:0015934	View Gene Set	1.959e-06	64	0.0001335	196	large ribosomal subunit	amigo.geneontol...
GO GO:0007080	View Gene Set	2.063e-06	11	0.0001392	197	mitotic metaphase plate congression	amigo.geneontol...
GO GO:0015935	View Gene Set	2.058e-06	59	0.0001392	197	small ribosomal subunit	amigo.geneontol...
GO GO:0043161	View Gene Set	2.143e-06	162	0.0001439	199	proteasomal ubiquitin-dependent protein catabolic process	amigo.geneontol...
GO GO:0007608	View Gene Set	2.209e-06	432	0.0001476	200	sensory perception of smell	amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad chr11q12	View Gene Set	7.007e-06	179	0.002284	1	Genes in cytogenetic band chr11q12	www.broad.mit.e...
Broad chr9q34	View Gene Set	3.509e-05	204	0.003813	2	Genes in cytogenetic band chr9q34	www.broad.mit.e...
Broad chr17q25	View Gene Set	3.071e-05	172	0.003813	2	Genes in cytogenetic band chr17q25	www.broad.mit.e...
Broad chr19q13	View Gene Set	5.155e-05	765	0.004202	4	Genes in cytogenetic band chr19q13	www.broad.mit.e...
Broad chr17p13	View Gene Set	0.0003639	225	0.02372	5	Genes in cytogenetic band chr17p13	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad PUJANA_BRCA1_PCC_NETWORK	View Gene Set	1.866e-78	1582	4.464e-75	1	Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues.	www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK	View Gene Set	6.178e-71	744	7.389e-68	2	Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200].	www.broad.mit.e...
Broad MANALO_HYPOXIA_DN	View Gene Set	5.924e-66	276	4.723e-63	3	Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091].	www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP	View Gene Set	1.246e-65	577	7.451e-63	4	Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1).	www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN	View Gene Set	1.159e-58	1253	5.546e-56	5	Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue.	www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	View Gene Set	2.919e-56	1180	1.164e-53	6	Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314].	www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN	View Gene Set	6.198e-45	920	2.118e-42	7	Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h.	www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX	View Gene Set	1.321e-42	757	3.949e-40	8	Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613].	www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP	View Gene Set	5.998e-41	485	1.594e-38	9	Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector.	www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP	View Gene Set	1.076e-40	143	2.573e-38	10	Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3.	www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE	View Gene Set	3.547e-40	331	7.714e-38	11	The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module.	www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN	View Gene Set	1.454e-39	243	2.898e-37	12	Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h.	www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK	View Gene Set	3.908e-38	410	7.191e-36	13	Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues.	www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER	View Gene Set	7.701e-36	138	1.316e-33	14	The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome.	www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6	View Gene Set	4.439e-35	435	7.078e-33	15	Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome.	www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN	View Gene Set	3.33e-29	832	4.978e-27	16	Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h.	www.broad.mit.e...
Broad MUELLER_PLURINET	View Gene Set	1.346e-28	294	1.894e-26	17	Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells).	www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES	View Gene Set	5.077e-28	630	6.746e-26	18	Genes showing cell-cycle stage-specific expression [PMID=12058064].	www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	View Gene Set	1.419e-26	436	1.786e-24	19	Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs.	www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP	View Gene Set	1.684e-26	408	2.013e-24	20	Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples.	www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK	View Gene Set	6.187e-26	164	7.047e-24	21	Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP	View Gene Set	1.394e-25	589	1.516e-23	22	Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN	View Gene Set	3.501e-25	80	3.642e-23	23	Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK	View Gene Set	8.103e-24	1375	8.076e-22	24	Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues.	www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP	View Gene Set	3.544e-23	152	3.391e-21	25	Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years.	www.broad.mit.e...
Broad BIDUS_METASTASIS_UP	View Gene Set	1.3e-22	203	1.196e-20	26	Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases.	www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN	View Gene Set	1.41e-22	415	1.249e-20	27	Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector.	www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS	View Gene Set	1.63e-22	92	1.393e-20	28	Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues.	www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	View Gene Set	3.952e-22	639	3.26e-20	29	Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts.	www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP	View Gene Set	7.614e-22	279	6.071e-20	30	Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi.	www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP	View Gene Set	8.215e-22	53	6.339e-20	31	Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive.	www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP	View Gene Set	1.517e-21	144	1.134e-19	32	Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones.	www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN	View Gene Set	2.762e-21	62	2.002e-19	33	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK	View Gene Set	5.17e-21	92	3.637e-19	34	Genes constituting the BRCA-centered network (BCN).	www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP	View Gene Set	6.635e-21	180	4.535e-19	35	Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2	View Gene Set	4.026e-20	265	2.675e-18	36	Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN	View Gene Set	5.696e-20	96	3.682e-18	37	Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444].	www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP	View Gene Set	1.623e-19	711	1.022e-17	38	Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	View Gene Set	1.671e-19	184	1.025e-17	39	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering.	www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN	View Gene Set	3.083e-19	289	1.843e-17	40	Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi.	www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN	View Gene Set	4.811e-19	86	2.807e-17	41	Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors.	www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN	View Gene Set	8.726e-19	201	4.97e-17	42	Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1.	www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP	View Gene Set	2.41e-18	93	1.34e-16	43	Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte.	www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN	View Gene Set	6.876e-18	303	3.738e-16	44	Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes.	www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN	View Gene Set	1.317e-17	148	6.998e-16	45	Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi.	www.broad.mit.e...
Broad BENPORATH_PROLIFERATION	View Gene Set	2.323e-17	140	1.208e-15	46	Set 'Proliferation Cluster': genes defined in human breast tumor expression data.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM	View Gene Set	4.125e-17	154	2.099e-15	47	Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum.	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	View Gene Set	6.687e-17	308	3.332e-15	48	Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only.	www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN	View Gene Set	1.086e-16	332	5.301e-15	49	Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265].	www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN	View Gene Set	2.984e-16	158	1.427e-14	50	Genes down-regulated in Wilm's tumor samples compared to fetal kidney.	www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN	View Gene Set	3.216e-16	43	1.508e-14	51	Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757].	www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP	View Gene Set	1.064e-15	127	4.895e-14	52	Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database.	www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN	View Gene Set	3.144e-15	241	1.419e-13	53	Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties.	www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN	View Gene Set	5.853e-15	138	2.593e-13	54	Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371].	www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN	View Gene Set	6.527e-15	124	2.839e-13	55	Upregulated by induction of exogenous BRCA1 in EcR-293 cells	www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN	View Gene Set	1.652e-14	139	7.055e-13	56	Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi.	www.broad.mit.e...
Broad CHANG_CYCLING_GENES	View Gene Set	2.813e-14	49	1.181e-12	57	Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature.	www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE	View Gene Set	3.548e-14	36	1.463e-12	58	Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation.	www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP	View Gene Set	4.58e-14	52	1.857e-12	59	Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage.	www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP	View Gene Set	1.12e-13	135	4.465e-12	60	Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360].	www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN	View Gene Set	2.658e-13	131	1.042e-11	61	Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP	View Gene Set	2.791e-13	53	1.077e-11	62	The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele.	www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP	View Gene Set	4.457e-13	43	1.692e-11	63	Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes.	www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN	View Gene Set	1.272e-12	66	4.679e-11	64	Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES	View Gene Set	1.259e-12	128	4.679e-11	64	Genes involved in DNA replication compiled manually by the authors.	www.broad.mit.e...
Broad DANG_BOUND_BY_MYC	View Gene Set	1.501e-12	1045	5.44e-11	66	Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database.	www.broad.mit.e...
Broad REN_BOUND_BY_E2F	View Gene Set	1.543e-12	47	5.508e-11	67	Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay.	www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP	View Gene Set	8.525e-12	359	2.999e-10	68	The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma.	www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN	View Gene Set	9.863e-12	52	3.406e-10	69	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage.	www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP	View Gene Set	9.966e-12	283	3.406e-10	69	Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue.	www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2	View Gene Set	1.083e-11	33	3.649e-10	71	Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples.	www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN	View Gene Set	1.434e-11	42	4.706e-10	72	Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037].	www.broad.mit.e...
Broad LY_AGING_OLD_DN	View Gene Set	1.436e-11	47	4.706e-10	72	Genes up-regulated in fibroblasts from old individuals compared to those from young donors.	www.broad.mit.e...
Broad PENG_GLUTAMINE_DEPRIVATION_DN	View Gene Set	1.959e-11	84	6.333e-10	74	Genes down-regulated in BJAB cells (B-lymphoma) after glutamine [PubChem=738] deprivation.	www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP	View Gene Set	3.039e-11	57	9.691e-10	75	DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not.	www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP	View Gene Set	3.261e-11	213	1.026e-09	76	Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples.	www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN	View Gene Set	3.764e-11	53	1.169e-09	77	Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019].	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP	View Gene Set	6.697e-11	314	2.054e-09	78	Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP	View Gene Set	1.356e-10	537	4.106e-09	79	Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h.	www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN	View Gene Set	1.403e-10	49	4.195e-09	80	Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES	View Gene Set	2.295e-10	205	6.776e-09	81	Genes involved in DNA repair compiled manually by the authors.	www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP	View Gene Set	4.374e-10	178	1.276e-08	82	Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi.	www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS	View Gene Set	8.966e-10	19	2.584e-08	83	RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	View Gene Set	1.052e-09	681	2.996e-08	84	Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad BENPORATH_ES_1	View Gene Set	1.279e-09	367	3.601e-08	85	Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies.	www.broad.mit.e...
Broad YU_MYC_TARGETS_UP	View Gene Set	1.463e-09	37	4.069e-08	86	Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609].	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP	View Gene Set	2.249e-09	45	6.184e-08	87	Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone.	www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN	View Gene Set	2.347e-09	859	6.38e-08	88	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi.	www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP	View Gene Set	3.246e-09	68	8.723e-08	89	Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609].	www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP	View Gene Set	6.854e-09	80	1.822e-07	90	Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages.	www.broad.mit.e...
Broad DANG_REGULATED_BY_MYC_UP	View Gene Set	8.606e-09	65	2.262e-07	91	Genes up-regulated by MYC [Gene ID=4609] according to the MYC Target Gene Database.	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN	View Gene Set	1.096e-08	51	2.848e-07	92	Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC).	www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN	View Gene Set	1.15e-08	15	2.958e-07	93	Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors.	www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP	View Gene Set	1.222e-08	469	3.109e-07	94	Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK	View Gene Set	2.197e-08	100	5.531e-07	95	Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN	View Gene Set	4.982e-08	46	1.241e-06	96	Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone.	www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN	View Gene Set	7.076e-08	136	1.745e-06	97	Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions.	www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER	View Gene Set	8.101e-08	60	1.977e-06	98	Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL	View Gene Set	9.639e-08	109	2.329e-06	99	Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION	View Gene Set	1.104e-07	71	2.641e-06	100	Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad WONG_PROTEASOME_GENE_MODULE	View Gene Set	1.711e-07	46	4.053e-06	101	Genes that comprise the proteasome gene module	www.broad.mit.e...
Broad NAKAMURA_CANCER_MICROENVIRONMENT_DN	View Gene Set	1.861e-07	45	4.364e-06	102	Genes down-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro.	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN	View Gene Set	2.207e-07	160	5.125e-06	103	Genes down-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2 STK6 and ZNF217 [Gene ID=4605 6790 7764]	www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP	View Gene Set	4.398e-07	370	1.011e-05	104	Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells.	www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP	View Gene Set	4.756e-07	317	1.084e-05	105	Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector.	www.broad.mit.e...
Broad CHAUHAN_RESPONSE_TO_METHOXYESTRADIOL_UP	View Gene Set	5.261e-07	47	1.187e-05	106	Genes up-regulated by 2-methoxyestradiol (2ME2) [PubChem=1573] in the MM.1S cell line (multiple myeloma) sensitive to dexamethasone [PubChem=5743].	www.broad.mit.e...
Broad WU_APOPTOSIS_BY_CDKN1A_VIA_TP53	View Gene Set	5.916e-07	36	1.322e-05	107	Genes downstream of both CDKN1A and TP53 [Gene ID=1026 7157] in 2774qw1 cells (ovarian cancer).	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14	View Gene Set	6.603e-07	131	1.462e-05	108	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14.	www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS	View Gene Set	7.195e-07	768	1.579e-05	109	Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set.	www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN	View Gene Set	7.861e-07	76	1.709e-05	110	Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298].	www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN	View Gene Set	8.009e-07	351	1.726e-05	111	Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids.	www.broad.mit.e...
Broad TANG_SENESCENCE_TP53_TARGETS_DN	View Gene Set	1.023e-06	40	2.184e-05	112	Genes down-regulated in WI-38 cells (senescent primary fibroblasts) after inactivation of TP53 [Gene ID=7157] by GSE56 polypeptide.	www.broad.mit.e...
Broad MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP	View Gene Set	1.097e-06	92	2.323e-05	113	Genes correlated with the early tumor onset in the Emu-myc transgenic mouse lymphoma model.	www.broad.mit.e...
Broad MENSSEN_MYC_TARGETS	View Gene Set	1.158e-06	16	2.43e-05	114	Genes up-regulated by adenoviral expression of c-MYC [Gene ID=4609] in HUVEC cells (umbilical vein endothelium).	www.broad.mit.e...
Broad SCHLOSSER_MYC_AND_SERUM_RESPONSE_SYNERGY	View Gene Set	1.566e-06	31	3.256e-05	115	Cluster 3: genes strongly up-regulated in B493-6 cells (B lymphocytes) by a combination of MYC [Gene ID=4609] and serum but not by each of them alone.	www.broad.mit.e...
Broad CHNG_MULTIPLE_MYELOMA_HYPERPLOID_UP	View Gene Set	2.374e-06	51	4.896e-05	116	Protein biosynthesis transport or catabolism genes up-regulated in hyperploid multiple myeloma (MM) compared to the non-hyperploid MM samples.	www.broad.mit.e...
Broad CHANG_CORE_SERUM_RESPONSE_UP	View Gene Set	2.57e-06	66	5.255e-05	117	Up-regulated genes in the canonical gene expression signature of the fibroblast core serum response (CSR) defined by the Stanford group.	www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX	View Gene Set	3.383e-06	229	6.858e-05	118	Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	View Gene Set	3.467e-06	44	6.969e-05	119	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G123 defined by unsupervised clustering.	www.broad.mit.e...
Broad LY_AGING_PREMATURE_DN	View Gene Set	3.549e-06	24	7.075e-05	120	Genes down-regulated in fibroblasts from patients with Hutchinson-Gilford progeria (premature aging) compared to those from normal young individuals.	www.broad.mit.e...
Broad NADERI_BREAST_CANCER_PROGNOSIS_UP	View Gene Set	3.901e-06	37	7.711e-05	121	Up-regulated genes in the breast cancer prognostic signature of 70 genes that significantly correlated with survival.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_KINOME_RED	View Gene Set	3.986e-06	15	7.753e-05	122	Genes in the red cluster of protein kinases distinguishing between luminal A and basal breast cancer subtypes.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL	View Gene Set	3.986e-06	15	7.753e-05	122	Protein kinases distinguishing between basal and luminal A subtypes of breast cancer.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17	View Gene Set	4.351e-06	165	8.394e-05	124	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17.	www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP	View Gene Set	4.569e-06	100	8.742e-05	125	Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959].	www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN	View Gene Set	5.792e-06	22	0.00011	126	Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161].	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN	View Gene Set	6.262e-06	60	0.0001179	127	Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701].	www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_DN	View Gene Set	6.916e-06	25	0.0001292	128	Genes down-regulated in EVSA-T cells (breast cancer) treated THC (delta-9-tetrahydrocannabinol) [PubChem=6610319].	www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_A_DN	View Gene Set	7.117e-06	17	0.000132	129	Genes down-regulated in the luminal A subtype of breast cancer.	www.broad.mit.e...
Broad HESS_TARGETS_OF_HOXA9_AND_MEIS1_UP	View Gene Set	7.511e-06	59	0.0001382	130	Genes up-regulated in hematopoietic precursor cells conditionally expressing HOXA9 and MEIS1 [Gene ID=3205 4211].	www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN	View Gene Set	9.9e-06	42	0.0001808	131	Genes down-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI [Gene ID=23495].	www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN	View Gene Set	1.17e-05	212	0.0002119	132	Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199].	www.broad.mit.e...
Broad POMEROY_MEDULLOBLASTOMA_PROGNOSIS_DN	View Gene Set	1.263e-05	39	0.0002272	133	Top marker genes in medulloblastoma associated with poor response to treatment (poor outcome).	www.broad.mit.e...
Broad PENG_RAPAMYCIN_RESPONSE_DN	View Gene Set	1.304e-05	69	0.0002327	134	Genes down-regulated in BJUB cells (B-lymphoma) in response to rapamycin [PubChem=6610346] treatment.	www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2	View Gene Set	1.585e-05	111	0.00028	135	'Cancer prone response profile' (CPRP): genes common to estradiol and bisphenol A [PubChem=5757 6623] response of epithelial cell cultures from patients at high risk of breast cancer.	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP	View Gene Set	1.592e-05	135	0.00028	135	Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability.	www.broad.mit.e...
Broad GEORGES_CELL_CYCLE_MIR192_TARGETS	View Gene Set	1.914e-05	59	0.0003342	137	Experimentally validated direct targets of MIR192 [Gene ID=406967] microRNA; MIR192 caused cell cycle arrest in HCT116 cells (colon cancer).	www.broad.mit.e...
Broad LEE_METASTASIS_AND_RNA_PROCESSING_UP	View Gene Set	2.026e-05	15	0.0003512	138	Components of RNA post-transcriptional modification machinery up-regulated in MDA-MB-435 cells (breast cancer) whose metastatic potential has been reduced by expression of NME1 [Gene ID=4830].	www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE	View Gene Set	2.091e-05	54	0.0003598	139	Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad BHATTACHARYA_EMBRYONIC_STEM_CELL	View Gene Set	2.303e-05	76	0.0003935	140	The 'stemnes' signature: genes up-regulated and common to 6 human embryonic stem cell lines tested.	www.broad.mit.e...
Broad PENG_LEUCINE_DEPRIVATION_DN	View Gene Set	2.406e-05	50	0.0004081	141	Genes down-regulated in BJAB cells (B-lymphoma) after leucine [PubChem=857] deprivation.	www.broad.mit.e...
Broad KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN	View Gene Set	3.128e-05	10	0.000527	142	Genes down-regulated in response to nutlin-3a [PubChem=216345] an inhibitor of MDM2 [Gene ID=4193] in skin fibroblast cultures after knockdown of TP53 [Gene ID=7157] by RNAi.	www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_14HR_UP	View Gene Set	3.346e-05	150	0.0005596	143	Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 14 h time point that were not up-regulated at the previous time point 12 h.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP	View Gene Set	3.793e-05	52	0.0006301	144	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G23 defined by unsupervised clustering.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION_CCNE1	View Gene Set	4.726e-05	38	0.0007797	145	Selected gradually up-regulated genes whose expression profile follows that of CCNE1 [Gene ID=898] in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC	View Gene Set	4.883e-05	101	0.0008	146	Cluster 2: genes up-regulated in B493-6 cells (B lymphocytes) by serum alone or in combination with MYC [Gene ID=4609] but not by MYC alone.	www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES	View Gene Set	5.889e-05	384	0.0009582	147	Housekeeping genes identified as expressed across 19 normal tissues.	www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN	View Gene Set	6.586e-05	61	0.001064	148	Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562].	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_11	View Gene Set	6.712e-05	93	0.001077	149	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11.	www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE	View Gene Set	7.795e-05	187	0.001243	150	Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP.	www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP	View Gene Set	8.623e-05	269	0.001366	151	Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue.	www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_UP	View Gene Set	8.771e-05	168	0.00138	152	Genes with copy number gains in primary neuroblastoma tumors.	www.broad.mit.e...
Broad SEMBA_FHIT_TARGETS_DN	View Gene Set	9.143e-05	10	0.001429	153	Genes down-regulated in H1299 cells (non-small cell lung cancer NSCLC) expressing the Y144F mutant form of FHIT [Gene ID=2272].	www.broad.mit.e...
Broad MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP	View Gene Set	0.0001176	10	0.001827	154	Up-regulated genes predicting poor survival of patients with thyroid carcinoma.	www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_SUBGROUPS	View Gene Set	0.0001604	28	0.002475	155	Top genes up-regulated in MM4 vs MM1 subgroup of multiple myeloma samples.	www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP	View Gene Set	0.0001715	1353	0.00263	156	Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors.	www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_RESPONSIVE_TO_ESTROGEN_DN	View Gene Set	0.0001985	41	0.003006	157	Genes down-regulated by estradiol [PubChem=5757] and down-regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer).	www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP	View Gene Set	0.000198	192	0.003006	157	Genes enriched in embryonic neural and hematopoietic stem cells.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP	View Gene Set	0.0002183	36	0.003263	159	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_DN	View Gene Set	0.0002183	36	0.003263	159	Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad CROONQUIST_NRAS_VS_STROMAL_STIMULATION_DN	View Gene Set	0.0002807	81	0.004152	161	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing an activated form of NRAS [Gene ID=4893] off a plasmid vector compared to those co-cultured with bone marrow stromal cells.	www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN	View Gene Set	0.0002812	123	0.004152	161	Genes highly expressed in hepatocellular carcinoma with poor survival.	www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE	View Gene Set	0.0002881	315	0.004202	163	Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells.	www.broad.mit.e...
Broad CHIARETTI_T_ALL_RELAPSE_PROGNOSIS	View Gene Set	0.0002867	12	0.004202	163	Genes whose expression predicted relapse in less than 2 years after chemotherapy for adult patients with T-ALL (T cell lymphoblastic leukemia).	www.broad.mit.e...
Broad SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP	View Gene Set	0.0003377	45	0.004895	165	Top 50 up-regulated markers distinguishing diffuse large B-cell lymphoma (DLBCL) from follicular lymphoma (FL) samples.	www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP	View Gene Set	0.000358	263	0.005133	166	Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone.	www.broad.mit.e...
Broad OLSSON_E2F3_TARGETS_DN	View Gene Set	0.0003583	28	0.005133	166	Genes down-regulated in the 5637 cell line (bladder cancer) after knockdown of E2F3 [Gene ID=1871] by RNAi.	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_GREEN_DN	View Gene Set	0.0003925	24	0.005588	168	Genes from the green module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphorylcholine (oxPAPC).	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_MAGENTA_UP	View Gene Set	0.0004019	26	0.005655	169	Genes from the magenta module which are up-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphorylcholine (oxPAPC).	www.broad.mit.e...
Broad KIM_GASTRIC_CANCER_CHEMOSENSITIVITY	View Gene Set	0.0003998	97	0.005655	169	Genes up-regulated in gastric cancer patients refractory to chemotherapy treatment with 5-fluorouracil and cisplatin [PubChem=3385 2767] compared to the sensitive state.	www.broad.mit.e...
Broad OHASHI_AURKB_TARGETS	View Gene Set	0.0004076	8	0.005702	171	Candidate substrate proteins of AURKB [Gene ID=9212].	www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP	View Gene Set	0.0004184	290	0.005819	172	Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma.	www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER	View Gene Set	0.0004224	167	0.005841	173	Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines.	www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_UP	View Gene Set	0.0004759	64	0.006543	174	Genes up-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi.	www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_DN	View Gene Set	0.0005008	17	0.006846	175	Down-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties.	www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS	View Gene Set	0.0005206	855	0.007076	176	Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi.	www.broad.mit.e...
Broad WAKASUGI_HAVE_ZNF143_BINDING_SITES	View Gene Set	0.0005442	55	0.007355	177	DNA repair genes whose promoters contain putative ZNF143 [Gene ID=7702] binding sites.	www.broad.mit.e...
Broad BASSO_B_LYMPHOCYTE_NETWORK	View Gene Set	0.0005801	136	0.007796	178	Genes which comprise the top 1% of highly interconnected genes (major hubs) that account for most of gene interactions in the reconstructed regulatory networks from expression profiles in B lymphocytes.	www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN	View Gene Set	0.0005868	121	0.007841	179	Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495].	www.broad.mit.e...
Broad JAZAERI_BREAST_CANCER_BRCA1_VS_BRCA2_UP	View Gene Set	0.00059	45	0.007841	179	Up-regulated genes distinguishing between breast cancer tumors with mutated BRCA1 [Gene ID=672] from those with mutated BRCA2 [Gene ID=675].	www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_DN	View Gene Set	0.0006644	168	0.008781	181	Genes down-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects.	www.broad.mit.e...
Broad LIN_APC_TARGETS	View Gene Set	0.0007192	52	0.009453	182	Genes up-regulated by forced expression of APC [Gene ID=324] in the APC-deficient SW480 cell line (colon cancer).	www.broad.mit.e...
Broad PYEON_CANCER_HEAD_AND_NECK_VS_CERVICAL_UP	View Gene Set	0.0008379	175	0.01095	183	Up-regulated genes in head and neck cancer compared to cervical carcinoma samples.	www.broad.mit.e...
Broad SHEPARD_CRUSH_AND_BURN_MUTANT_DN	View Gene Set	0.000876	147	0.01139	184	Human orthologs of genes down-regulated in the crb ('crash and burn') zebrafish mutant that represents a loss-of-function mutation in BMYB [Gene ID=4605].	www.broad.mit.e...
Broad SHEPARD_BMYB_TARGETS	View Gene Set	0.0009119	60	0.01179	185	Human orthologs of BMYB [Gene ID=4605] target genes in zebra fish identified as commonly changed in the BMYB loss of function mutant crb ('crush and burn') and after knockdown of BMYB by morpholino.	www.broad.mit.e...
Broad MORI_MATURE_B_LYMPHOCYTE_DN	View Gene Set	0.000923	56	0.01187	186	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the mature B	www.broad.mit.e...
Broad HEIDENBLAD_AMPLICON_8Q24_UP	View Gene Set	0.0009397	29	0.01196	187	Up-regulated genes whose expression is associated with amplification of the 8q24 chromosome region in pancreatic cancer cell lines.	www.broad.mit.e...
Broad BENPORATH_ES_2	View Gene Set	0.000936	39	0.01196	187	Set 'Set 'ES exp2': genes overexpressed in human embryonic stem cells according to a meta-analysis of 8 profiling studies.	www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_UP	View Gene Set	0.0009701	74	0.01228	189	Genes up-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones.	www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_6HR_UP	View Gene Set	0.001064	50	0.01339	190	Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 6h.	www.broad.mit.e...
Broad SU_TESTIS	View Gene Set	0.001134	75	0.0142	191	Genes up-regulated specifically in human testis tissue.	www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP	View Gene Set	0.001188	87	0.0148	192	Top 100 probe sets contrubuting to the positive side of the 2nd principal component; associated with adipocytic differentiation.	www.broad.mit.e...
Broad IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR	View Gene Set	0.001195	100	0.01481	193	Genes in the expression cluster 'Early Progenitors Shared': up-regulated in hematopoietic progenitors from adult bone marrow and from fetal liver.	www.broad.mit.e...
Broad MEINHOLD_OVARIAN_CANCER_LOW_GRADE_DN	View Gene Set	0.001484	18	0.0183	194	Genes down-regulated in low grade (LMP and G1) serous ovarian carcinomas vs the higher grade invasive tumors (G2 and G3).	www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION	View Gene Set	0.001581	154	0.01939	195	Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population.	www.broad.mit.e...
Broad SARRIO_EPITHELIAL_MESENCHYMAL_TRANSITION_UP	View Gene Set	0.001761	16	0.02149	196	Genes up-regulated in MCF10A cells (breast cancer) grown at low (mesenchymal phenotype) compared to those grown at high (epithelial basal-like phenotype) confluency.	www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN	View Gene Set	0.001814	297	0.02203	197	Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_7	View Gene Set	0.001978	65	0.0239	198	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 7.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_DN	View Gene Set	0.002093	21	0.02516	199	Genes down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad PELLICCIOTTA_HDAC_IN_ANTIGEN_PRESENTATION_DN	View Gene Set	0.002292	49	0.02741	200	Antigen processing and presentation genes down-regulated in JY cells (B lymphocytes) treated with trichostatin A (TSA) [PubChem=5562].	www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad BIOCARTA_RANMS_PATHWAY	View Gene Set	1.153e-06	10	0.0002501	1	Role of Ran in mitotic spindle regulation	www.broad.mit.e...
Broad BIOCARTA_EIF_PATHWAY	View Gene Set	8.108e-06	16	0.0008797	2	Eukaryotic protein translation	www.broad.mit.e...
Broad BIOCARTA_ATRBRCA_PATHWAY	View Gene Set	0.0001698	21	0.01228	3	Role of BRCA1 BRCA2 and ATR in Cancer Susceptibility	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KEGG_SPLICEOSOME	View Gene Set	1.009e-20	118	1.877e-18	1	Spliceosome	www.broad.mit.e...
Broad KEGG_CELL_CYCLE	View Gene Set	2.883e-09	128	2.682e-07	2	Cell cycle	www.broad.mit.e...
Broad KEGG_PROTEASOME	View Gene Set	1.585e-07	48	9.825e-06	3	Proteasome	www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM	View Gene Set	1.368e-06	98	5.877e-05	4	Pyrimidine metabolism	www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION	View Gene Set	1.58e-06	59	5.877e-05	4	RNA degradation	www.broad.mit.e...
Broad KEGG_DNA_REPLICATION	View Gene Set	2.28e-06	36	7.068e-05	6	DNA replication	www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS	View Gene Set	1.077e-05	41	0.0002861	7	Aminoacyl-tRNA biosynthesis	www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR	View Gene Set	5.145e-05	23	0.001063	8	Mismatch repair	www.broad.mit.e...
Broad KEGG_OLFACTORY_TRANSDUCTION	View Gene Set	4.785e-05	389	0.001063	8	Olfactory transduction	www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION	View Gene Set	6.087e-05	28	0.001132	10	Homologous recombination	www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR	View Gene Set	8.025e-05	35	0.001357	11	Base excision repair	www.broad.mit.e...
Broad KEGG_RIBOSOME	View Gene Set	0.0003302	88	0.005118	12	Ribosome	www.broad.mit.e...
Broad KEGG_ONE_CARBON_POOL_BY_FOLATE	View Gene Set	0.0006498	17	0.009297	13	One carbon pool by folate	www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.002296	44	0.0305	14	Nucleotide excision repair	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad REACTOME_CELL_CYCLE_MITOTIC	View Gene Set	8.399e-34	306	1.806e-31	1	Genes involved in Cell Cycle Mitotic	www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION	View Gene Set	7.961e-34	415	1.806e-31	1	Genes involved in Gene Expression	www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES	View Gene Set	8.067e-33	157	1.156e-30	3	Genes involved in Mitotic M-M/G1 phases	www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	View Gene Set	3.469e-25	128	3.729e-23	4	Genes involved in Processing of Capped Intron-Containing Pre-mRNA	www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE	View Gene Set	5.478e-20	92	4.711e-18	5	Genes involved in Mitotic Prometaphase	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING	View Gene Set	7.859e-20	97	5.632e-18	6	Genes involved in mRNA Splicing	www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS	View Gene Set	6.532e-19	124	4.012e-17	7	Genes involved in Elongation and Processing of Capped Transcripts	www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT	View Gene Set	6.356e-17	142	3.416e-15	8	Genes involved in Formation and Maturation of mRNA Transcript	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA	View Gene Set	4.564e-16	95	2.181e-14	9	Genes involved in Metabolism of RNA	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS	View Gene Set	3.384e-15	110	1.455e-13	10	Genes involved in Cell Cycle Checkpoints	www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION	View Gene Set	3.621e-13	61	1.416e-11	11	Genes involved in M/G1 Transition	www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION	View Gene Set	1.508e-12	102	4.99e-11	12	Genes involved in G1/S Transition	www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA	View Gene Set	1.458e-12	89	4.99e-11	12	Genes involved in Synthesis of DNA	www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION	View Gene Set	1.845e-12	76	5.667e-11	14	Genes involved in DNA Replication Pre-Initiation	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION	View Gene Set	3.446e-12	188	9.878e-11	15	Genes involved in Transcription	www.broad.mit.e...
Broad REACTOME_TRANSLATION	View Gene Set	8.477e-12	120	2.278e-10	16	Genes involved in Translation	www.broad.mit.e...
Broad REACTOME_S_PHASE	View Gene Set	1.017e-11	103	2.573e-10	17	Genes involved in S Phase	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS	View Gene Set	9.985e-11	215	2.385e-09	18	Genes involved in Metabolism of proteins	www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX	View Gene Set	2.783e-10	52	6.299e-09	19	Genes involved in CDT1 association with the CDC6:ORC:origin complex	www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN	View Gene Set	5.868e-10	63	1.201e-08	20	Genes involved in Orc1 removal from chromatin	www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY	View Gene Set	5.765e-10	50	1.201e-08	20	Genes involved in snRNP Assembly	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT	View Gene Set	7.448e-10	42	1.456e-08	22	Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE	View Gene Set	1.112e-09	71	2.079e-08	23	Genes involved in Regulation of APC/C activators between G1/S and early anaphase	www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS	View Gene Set	2.43e-09	43	4.353e-08	24	Genes involved in G2/M Checkpoints	www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A	View Gene Set	2.982e-09	63	5.129e-08	25	Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A	www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT	View Gene Set	5.457e-09	106	8.694e-08	26	Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit	www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS	View Gene Set	5.459e-09	120	8.694e-08	26	Genes involved in Host Interactions of HIV factors	www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE	View Gene Set	1.007e-08	77	1.547e-07	28	Genes involved in Telomere Maintenance	www.broad.mit.e...
Broad REACTOME_HIV_INFECTION	View Gene Set	1.624e-08	183	2.408e-07	29	Genes involved in HIV Infection	www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1	View Gene Set	2.429e-08	48	3.482e-07	30	Genes involved in SCF-beta-TrCP mediated degradation of Emi1	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS	View Gene Set	3.925e-08	37	5.31e-07	31	Genes involved in Activation of ATR in response to replication stress	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION	View Gene Set	3.951e-08	120	5.31e-07	31	Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC	View Gene Set	4.941e-08	57	6.438e-07	33	Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA	View Gene Set	7.625e-08	45	9.643e-07	34	Genes involved in Metabolism of mRNA	www.broad.mit.e...
Broad REACTOME_TRANSLATION_INITIATION_COMPLEX_FORMATION	View Gene Set	1.434e-07	56	1.762e-06	35	Genes involved in Translation initiation complex formation	www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE	View Gene Set	1.592e-07	43	1.85e-06	36	Genes involved in p53-Independent DNA Damage Response	www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION	View Gene Set	1.589e-07	40	1.85e-06	36	Genes involved in tRNA Aminoacylation	www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE	View Gene Set	1.855e-07	137	2.045e-06	38	Genes involved in Influenza Life Cycle	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE	View Gene Set	1.814e-07	47	2.045e-06	38	Genes involved in Regulation of ornithine decarboxylase (ODC)	www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA	View Gene Set	3.14e-07	31	3.375e-06	40	Genes involved in Rev-mediated nuclear export of HIV-1 RNA	www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53	View Gene Set	3.242e-07	46	3.4e-06	41	Genes involved in Stabilization of p53	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA	View Gene Set	3.354e-07	32	3.434e-06	42	Genes involved in Transport of the SLBP independent Mature mRNA	www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT	View Gene Set	3.86e-07	58	3.86e-06	43	Genes involved in Signaling by Wnt	www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN	View Gene Set	4.433e-07	30	4.333e-06	44	Genes involved in Nuclear import of Rev protein	www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING	View Gene Set	5.142e-07	25	4.913e-06	45	Genes involved in mRNA 3-end processing	www.broad.mit.e...
Broad REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION	View Gene Set	6.264e-07	23	5.855e-06	46	Genes involved in Cytosolic tRNA aminoacylation	www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G	View Gene Set	1.28e-06	47	1.147e-05	47	Genes involved in Vif-mediated degradation of APOBEC3G	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS	View Gene Set	1.279e-06	29	1.147e-05	47	Genes involved in Transport of Ribonucleoproteins into the Host Nucleus	www.broad.mit.e...
Broad REACTOME_OLFACTORY_SIGNALING_PATHWAY	View Gene Set	1.532e-06	371	1.344e-05	49	Genes involved in Olfactory Signaling Pathway	www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21	View Gene Set	1.614e-06	52	1.38e-05	50	Genes involved in SCF(Skp2)-mediated degradation of p2721	www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY	View Gene Set	1.637e-06	29	1.38e-05	50	Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery	www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS	View Gene Set	2.36e-06	95	1.951e-05	52	Genes involved in Formation of a pool of free 40S subunits	www.broad.mit.e...
Broad REACTOME_CHAPERONIN_MEDIATED_PROTEIN_FOLDING	View Gene Set	4.102e-06	50	3.328e-05	53	Genes involved in Chaperonin-mediated protein folding	www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION	View Gene Set	1.39e-05	31	0.0001107	54	Genes involved in DNA strand elongation	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING	View Gene Set	1.445e-05	59	0.000113	55	Genes involved in RNA Polymerase I Promoter Opening	www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES	View Gene Set	1.769e-05	71	0.0001348	56	Genes involved in Metablism of nucleotides	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE	View Gene Set	1.787e-05	82	0.0001348	56	Genes involved in RNA PolymerasePromoter Clearance	www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS	View Gene Set	2.087e-05	49	0.0001547	58	Genes involved in Packaging Of Telomere Ends	www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION	View Gene Set	2.258e-05	84	0.0001646	59	Genes involved in G2/M Transition	www.broad.mit.e...
Broad REACTOME_FORMATION_OF_TUBULIN_FOLDING_INTERMEDIATES_BY_CCT_TRIC	View Gene Set	2.301e-05	22	0.0001649	60	Genes involved in Formation of tubulin folding intermediates by CCT/TriC	www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS	View Gene Set	2.402e-05	31	0.0001693	61	Genes involved in Vpr-mediated nuclear import of PICs	www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX	View Gene Set	2.849e-05	49	0.0001976	62	Genes involved in Formation of the ternary complex and subsequently the 43S complex	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX	View Gene Set	3.174e-05	30	0.0002166	63	Genes involved in Activation of the pre-replicative complex	www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE	View Gene Set	3.286e-05	90	0.0002174	64	Genes involved in Late Phase of HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA	View Gene Set	3.273e-05	11	0.0002174	64	Genes involved in Unwinding of DNA	www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION	View Gene Set	3.764e-05	33	0.0002415	66	Genes involved in E2F mediated regulation of DNA replication	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN	View Gene Set	3.718e-05	29	0.0002415	66	Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY	View Gene Set	3.877e-05	38	0.0002452	68	Genes involved in mRNA Splicing - Minor Pathway	www.broad.mit.e...
Broad REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC	View Gene Set	4.265e-05	28	0.0002658	69	Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC	www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_TRIC_CCT_WITH_TARGET_PROTEINS_DURING_BIOSYNTHESIS	View Gene Set	4.642e-05	29	0.0002852	70	Genes involved in Association of TriC/CCT with target proteins during biosynthesis	www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_	View Gene Set	4.89e-05	58	0.0002921	71	Genes involved in Cyclin E associated events during G1/S transition	www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S	View Gene Set	4.835e-05	22	0.0002921	71	Genes involved in E2F transcriptional targets at G1/S	www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES	View Gene Set	5.178e-05	28	0.000305	73	Genes involved in Extension of Telomeres	www.broad.mit.e...
Broad REACTOME_CDC6_ASSOCIATION_WITH_THE_ORC:ORIGIN_COMPLEX	View Gene Set	5.566e-05	11	0.0003234	74	Genes involved in CDC6 association with the ORC:origin complex	www.broad.mit.e...
Broad REACTOME_PEPTIDE_CHAIN_ELONGATION	View Gene Set	6.426e-05	84	0.0003684	75	Genes involved in Peptide chain elongation	www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE	View Gene Set	7.942e-05	103	0.0004493	76	Genes involved in HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION	View Gene Set	8.572e-05	83	0.0004787	77	Genes involved in RNA Polymerase II Transcription	www.broad.mit.e...
Broad REACTOME_CENTROSOME_MATURATION	View Gene Set	8.866e-05	72	0.0004887	78	Genes involved in Centrosome maturation	www.broad.mit.e...
Broad REACTOME_GLUCOSE_TRANSPORT	View Gene Set	0.0001053	38	0.000573	79	Genes involved in Glucose transport	www.broad.mit.e...
Broad REACTOME_DNA_REPAIR	View Gene Set	0.0001611	102	0.0008661	80	Genes involved in DNA Repair	www.broad.mit.e...
Broad REACTOME_APOPTOSIS	View Gene Set	0.000377	129	0.002001	81	Genes involved in Apoptosis	www.broad.mit.e...
Broad REACTOME_RECRUITMENT_OF_NUMA_TO_MITOTIC_CENTROSOMES	View Gene Set	0.0004154	11	0.002178	82	Genes involved in Recruitment of NuMA to mitotic centrosomes	www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR	View Gene Set	0.0004295	21	0.002225	83	Genes involved in Double-Strand Break Repair	www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR	View Gene Set	0.0004377	15	0.002241	84	Genes involved in Homologous Recombination Repair	www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA	View Gene Set	0.0004563	21	0.002308	85	Genes involved in Deadenylation of mRNA	www.broad.mit.e...
Broad REACTOME_VIRAL_MRNA_TRANSLATION	View Gene Set	0.0004762	84	0.002381	86	Genes involved in Viral mRNA Translation	www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_LICENSING_FACTORS_WITH_THE_PREREPLICATIVE_COMPLEX	View Gene Set	0.0005504	12	0.00272	87	Genes involved in Association of licensing factors with the pre-replicative complex	www.broad.mit.e...
Broad REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION	View Gene Set	0.0006359	100	0.003107	88	Genes involved in Influenza Viral RNA Transcription and Replication	www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS	View Gene Set	0.0007446	11	0.003597	89	Genes involved in Purine ribonucleoside monophosphate biosynthesis	www.broad.mit.e...
Broad REACTOME_SYNTHESIS_AND_INTERCONVERSION_OF_NUCLEOTIDE_DI_AND_TRIPHOSPHATES	View Gene Set	0.0008785	18	0.004197	90	Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates	www.broad.mit.e...
Broad REACTOME_E2F_ENABLED_INHIBITION_OF_PRE_REPLICATION_COMPLEX_FORMATION	View Gene Set	0.001133	10	0.005352	91	Genes involved in E2F-enabled inhibition of pre-replication complex formation	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_BETA_CELL_DEVELOPMENT	View Gene Set	0.001163	114	0.005435	92	Genes involved in Regulation of beta-cell development	www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE	View Gene Set	0.001277	15	0.005905	93	Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase	www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_3_TO_5_EXORIBONUCLEASE	View Gene Set	0.001872	11	0.008564	94	Genes involved in mRNA Decay by 3' to 5' Exoribonuclease	www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_5_TO_3_EXORIBONUCLEASE	View Gene Set	0.002096	13	0.009485	95	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GENE_EXPRESSION_IN_BETA_CELLS	View Gene Set	0.002198	101	0.009844	96	Genes involved in Regulation of gene expression in beta cells	www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM	View Gene Set	0.002396	22	0.01062	97	Genes involved in Pyrimidine metabolism	www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX	View Gene Set	0.00277	18	0.01215	98	Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex	www.broad.mit.e...
Broad REACTOME_MTOR_SIGNALLING	View Gene Set	0.003064	27	0.01331	99	Genes involved in mTOR signalling	www.broad.mit.e...
Broad REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES	View Gene Set	0.00324	62	0.01393	100	Genes involved in Loss of Nlp from mitotic centrosomes	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES	View Gene Set	0.007494	119	0.03191	101	Genes involved in Metabolism of carbohydrates	www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION	View Gene Set	0.007868	15	0.03317	102	Genes involved in Cyclin A1 associated events during G2/M transition	www.broad.mit.e...
Broad REACTOME_MTORC1_MEDIATED_SIGNALLING	View Gene Set	0.009374	11	0.03914	103	Genes involved in mTORC1-mediated signalling	www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS	View Gene Set	0.01047	18	0.0433	104	Genes involved in MicroRNA biogenesis	www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.01087	49	0.0445	105	Genes involved in Nucleotide Excision Repair	www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION	View Gene Set	0.0121	20	0.04908	106	Genes involved in Mitochondrial tRNA aminoacylation	www.broad.mit.e...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad V$E2F_Q4	View Gene Set	2.868e-15	166	1.764e-12	1	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q6	View Gene Set	9.038e-15	165	2.779e-12	2	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q6_01	View Gene Set	1.655e-13	177	3.394e-11	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F1_Q4_01	View Gene Set	2.707e-13	167	4.161e-11	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1_Q6	View Gene Set	1.544e-12	167	1.899e-10	5	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F_03	View Gene Set	2.408e-12	171	2.468e-10	6	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q3_01	View Gene Set	2.974e-12	171	2.613e-10	7	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q4_01	View Gene Set	1.117e-11	171	7.992e-10	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q6_01	View Gene Set	1.169e-11	167	7.992e-10	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q3	View Gene Set	2.297e-11	162	1.413e-09	10	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q3	View Gene Set	3.344e-11	176	1.869e-09	11	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F_02	View Gene Set	5.816e-11	169	2.425e-09	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1DP1_01	View Gene Set	5.914e-11	169	2.425e-09	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP2_01	View Gene Set	5.914e-11	169	2.425e-09	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F4DP2_01	View Gene Set	5.914e-11	169	2.425e-09	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F1DP1RB_01	View Gene Set	1.094e-10	168	4.207e-09	16	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad CACGTG_V$MYC_Q2	View Gene Set	1.29e-10	734	4.666e-09	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6	View Gene Set	4.121e-10	289	1.408e-08	18	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad V$MYCMAX_01	View Gene Set	5.359e-10	189	1.735e-08	19	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01	View Gene Set	7.931e-10	122	2.439e-08	20	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F4DP1_01	View Gene Set	1.298e-09	174	3.801e-08	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1_Q4	View Gene Set	1.876e-06	178	5.245e-05	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02	View Gene Set	2.106e-06	784	5.632e-05	23	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family	www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6	View Gene Set	2.259e-06	580	5.789e-05	24	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1	www.broad.mit.e...
Broad V$NFMUE1_Q6	View Gene Set	4.306e-06	175	0.0001059	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad KRCTCNNNNMANAGC_UNKNOWN	View Gene Set	5.673e-06	60	0.0001342	26	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KRCTCNNNNMANAGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MAX_01	View Gene Set	1.311e-05	194	0.0002987	27	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X	www.broad.mit.e...
Broad V$YY1_Q6	View Gene Set	1.365e-05	166	0.0002997	28	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad V$E2F_01	View Gene Set	2.003e-05	55	0.0004247	29	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TWSGCGCGAAAAYKR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GCGSCMNTTT_UNKNOWN	View Gene Set	3.809e-05	49	0.0007809	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGSCMNTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF_01	View Gene Set	4.12e-05	186	0.0008174	31	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF_C	View Gene Set	6.581e-05	211	0.001265	32	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NCACGTGN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$ARNT_01	View Gene Set	0.0001424	196	0.002654	33	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator	www.broad.mit.e...
Broad V$MYC_Q2	View Gene Set	0.0001897	135	0.003432	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTGS which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN	View Gene Set	0.0002823	130	0.00496	35	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad KTGGYRSGAA_UNKNOWN	View Gene Set	0.0004094	53	0.006993	36	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KTGGYRSGAA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGCNKCCATNK_UNKNOWN	View Gene Set	0.0004387	84	0.007293	37	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNKCCATNK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$NMYC_01	View Gene Set	0.0004589	201	0.007426	38	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCCACGTGNNN which matches annotation for MYCN: v-myc myelocytomatosis viral related oncogene neuroblastoma derived (avian)	www.broad.mit.e...
Broad KCCGNSWTTT_UNKNOWN	View Gene Set	0.0004953	76	0.007615	39	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KCCGNSWTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad RRCCGTTA_UNKNOWN	View Gene Set	0.0004843	53	0.007615	39	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RRCCGTTA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF2_Q6	View Gene Set	0.0005506	182	0.008259	41	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CASGYG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GATGKMRGCG_UNKNOWN	View Gene Set	0.0006934	47	0.01015	42	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATGKMRGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$YY1_02	View Gene Set	0.0009953	168	0.01424	43	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNCGGCCATCTTGNCTSNW which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad ATCMNTCCGY_UNKNOWN	View Gene Set	0.001077	36	0.01506	44	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ATCMNTCCGY. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$GABP_B	View Gene Set	0.001207	162	0.01649	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2	www.broad.mit.e...
Broad V$GR_01	View Gene Set	0.001279	154	0.0171	46	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNNNGKACNNNNTGTTCTNNNNNN which matches annotation for NR3C1: nuclear receptor subfamily 3 group C member 1 (glucocorticoid receptor)	www.broad.mit.e...
Broad V$ARNT_02	View Gene Set	0.001412	179	0.01809	47	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNRTCACGTGAYNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator	www.broad.mit.e...
Broad V$USF_Q6_01	View Gene Set	0.001388	168	0.01809	47	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NRCCACGTGASN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad AAGWWRNYGGC_UNKNOWN	View Gene Set	0.001632	85	0.02007	49	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AAGWWRNYGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYCMAX_B	View Gene Set	0.001627	193	0.02007	49	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad TTCNRGNNNNTTC_V$HSF_Q6	View Gene Set	0.001777	111	0.02143	51	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTCNRGNNNNTTC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GKCGCNNNNNNNTGAYG_UNKNOWN	View Gene Set	0.001944	41	0.023	52	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GKCGCNNNNNNNTGAYG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF_Q6	View Gene Set	0.002113	178	0.02452	53	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GYCACGTGNC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYCMAX_03	View Gene Set	0.002949	187	0.03358	54	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNNNCACGTGNNNNNNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$CMYB_01	View Gene Set	0.003495	179	0.03908	55	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCNRNNGRCNGTTGGKGG which matches annotation for MYB: v-myb myeloblastosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad V$MAZ_Q6	View Gene Set	0.003561	135	0.03911	56	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGGAGGG which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor)	www.broad.mit.e...
Broad GGAANCGGAANY_UNKNOWN	View Gene Set	0.004248	79	0.04583	57	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGAANCGGAANY. Motif does not match any known transcription factor	www.broad.mit.e...
Broad TAANNYSGCG_UNKNOWN	View Gene Set	0.004359	60	0.04622	58	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TAANNYSGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF_02	View Gene Set	0.004751	197	0.04952	59	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRNCACGTGNYNN. Motif does not match any known transcription factor	www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad MORF_BUB3	View Gene Set	4.519e-34	256	1.93e-31	1	Neighborhood of BUB3	www.broad.mit.e...
Broad MORF_EIF3S2	View Gene Set	4.146e-32	220	8.852e-30	2	Neighborhood of EIF3S2	www.broad.mit.e...
Broad MORF_UBE2I	View Gene Set	4.557e-30	208	6.486e-28	3	Neighborhood of UBE2I	www.broad.mit.e...
Broad GNF2_SMC4L1	View Gene Set	2.168e-28	75	2.314e-26	4	Neighborhood of SMC4L1	www.broad.mit.e...
Broad MORF_FBL	View Gene Set	7.698e-28	121	6.574e-26	5	Neighborhood of FBL	www.broad.mit.e...
Broad GNF2_RRM1	View Gene Set	1.239e-27	82	8.82e-26	6	Neighborhood of RRM1	www.broad.mit.e...
Broad MORF_PRKDC	View Gene Set	9.687e-27	173	5.909e-25	7	Neighborhood of PRKDC	www.broad.mit.e...
Broad MORF_AATF	View Gene Set	1.197e-26	179	6.387e-25	8	Neighborhood of AATF	www.broad.mit.e...
Broad MORF_RAD23A	View Gene Set	1.388e-26	316	6.586e-25	9	Neighborhood of RAD23A	www.broad.mit.e...
Broad GNF2_CCNB2	View Gene Set	6.742e-26	53	2.879e-24	10	Neighborhood of CCNB2	www.broad.mit.e...
Broad GNF2_CCNA2	View Gene Set	1.424e-25	62	5.527e-24	11	Neighborhood of CCNA2	www.broad.mit.e...
Broad GNF2_CDC20	View Gene Set	1.617e-25	52	5.754e-24	12	Neighborhood of CDC20	www.broad.mit.e...
Broad GNF2_PCNA	View Gene Set	5.759e-25	62	1.892e-23	13	Neighborhood of PCNA	www.broad.mit.e...
Broad GNF2_CENPF	View Gene Set	2.056e-24	56	6.27e-23	14	Neighborhood of CENPF	www.broad.mit.e...
Broad MORF_HDAC2	View Gene Set	1.396e-23	256	3.975e-22	15	Neighborhood of HDAC2	www.broad.mit.e...
Broad GNF2_RAN	View Gene Set	2.321e-23	78	6.195e-22	16	Neighborhood of RAN	www.broad.mit.e...
Broad GNF2_CDC2	View Gene Set	4.147e-23	56	1.042e-21	17	Neighborhood of CDC2	www.broad.mit.e...
Broad GNF2_PA2G4	View Gene Set	3.407e-22	73	8.083e-21	18	Neighborhood of PA2G4	www.broad.mit.e...
Broad MORF_ANP32B	View Gene Set	9.274e-22	174	2.084e-20	19	Neighborhood of ANP32B	www.broad.mit.e...
Broad GNF2_MCM4	View Gene Set	2.185e-21	50	4.664e-20	20	Neighborhood of MCM4	www.broad.mit.e...
Broad GNF2_HMMR	View Gene Set	6.056e-21	43	1.231e-19	21	Neighborhood of HMMR	www.broad.mit.e...
Broad MORF_ACP1	View Gene Set	7.531e-21	178	1.462e-19	22	Neighborhood of ACP1	www.broad.mit.e...
Broad GNF2_BUB1B	View Gene Set	3.938e-20	46	7.311e-19	23	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_RFC4	View Gene Set	6.68e-20	137	1.189e-18	24	Neighborhood of RFC4	www.broad.mit.e...
Broad GNF2_FEN1	View Gene Set	1.004e-19	49	1.714e-18	25	Neighborhood of FEN1	www.broad.mit.e...
Broad GNF2_RFC4	View Gene Set	1.505e-19	57	2.472e-18	26	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_CSNK2B	View Gene Set	1.922e-19	256	3.04e-18	27	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_DNMT1	View Gene Set	7.785e-19	105	1.187e-17	28	Neighborhood of DNMT1	www.broad.mit.e...
Broad MORF_DEK	View Gene Set	1.08e-18	229	1.591e-17	29	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_PPP1CC	View Gene Set	1.99e-18	150	2.833e-17	30	Neighborhood of PPP1CC	www.broad.mit.e...
Broad GNF2_ESPL1	View Gene Set	6.134e-18	35	8.45e-17	31	Neighborhood of ESPL1	www.broad.mit.e...
Broad GNF2_CKS2	View Gene Set	7.288e-18	45	9.725e-17	32	Neighborhood of CKS2	www.broad.mit.e...
Broad MORF_RAD54L	View Gene Set	9.51e-18	94	1.23e-16	33	Neighborhood of RAD54L	www.broad.mit.e...
Broad GNF2_RRM2	View Gene Set	2.635e-17	36	3.31e-16	34	Neighborhood of RRM2	www.broad.mit.e...
Broad GCM_APEX1	View Gene Set	2.971e-17	102	3.624e-16	35	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_HAT1	View Gene Set	6.841e-17	155	7.894e-16	36	Neighborhood of HAT1	www.broad.mit.e...
Broad GNF2_TTK	View Gene Set	6.815e-17	34	7.894e-16	36	Neighborhood of TTK	www.broad.mit.e...
Broad MORF_PCNA	View Gene Set	7.129e-17	71	8.011e-16	38	Neighborhood of PCNA	www.broad.mit.e...
Broad GNF2_MCM5	View Gene Set	8.031e-17	51	8.793e-16	39	Neighborhood of MCM5	www.broad.mit.e...
Broad MORF_SOD1	View Gene Set	1.018e-16	247	1.087e-15	40	Neighborhood of SOD1	www.broad.mit.e...
Broad GNF2_CENPE	View Gene Set	2.14e-16	37	2.228e-15	41	Neighborhood of CENPE	www.broad.mit.e...
Broad GNF2_CKS1B	View Gene Set	2.464e-16	36	2.505e-15	42	Neighborhood of CKS1B	www.broad.mit.e...
Broad MORF_XRCC5	View Gene Set	2.726e-16	210	2.707e-15	43	Neighborhood of XRCC5	www.broad.mit.e...
Broad GNF2_APEX1	View Gene Set	4.51e-16	72	4.377e-15	44	Neighborhood of APEX1	www.broad.mit.e...
Broad GNF2_NPM1	View Gene Set	7.487e-16	57	7.104e-15	45	Neighborhood of NPM1	www.broad.mit.e...
Broad GNF2_DEK	View Gene Set	9.558e-16	45	8.872e-15	46	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_G22P1	View Gene Set	1.078e-15	145	9.797e-15	47	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_ESPL1	View Gene Set	1.772e-15	58	1.577e-14	48	Neighborhood of ESPL1	www.broad.mit.e...
Broad MORF_NPM1	View Gene Set	2.114e-15	152	1.842e-14	49	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_RAN	View Gene Set	2.422e-15	242	2.068e-14	50	Neighborhood of RAN	www.broad.mit.e...
Broad GNF2_FBL	View Gene Set	3.74e-15	119	3.132e-14	51	Neighborhood of FBL	www.broad.mit.e...
Broad MORF_RRM1	View Gene Set	1.729e-14	90	1.42e-13	52	Neighborhood of RRM1	www.broad.mit.e...
Broad GNF2_RFC3	View Gene Set	2.287e-14	38	1.843e-13	53	Neighborhood of RFC3	www.broad.mit.e...
Broad MORF_FEN1	View Gene Set	4.075e-14	58	3.222e-13	54	Neighborhood of FEN1	www.broad.mit.e...
Broad MORF_RPA2	View Gene Set	4.31e-14	170	3.346e-13	55	Neighborhood of RPA2	www.broad.mit.e...
Broad GNF2_H2AFX	View Gene Set	6.015e-14	28	4.587e-13	56	Neighborhood of H2AFX	www.broad.mit.e...
Broad GNF2_BUB1	View Gene Set	6.905e-14	25	5.172e-13	57	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_GNB1	View Gene Set	7.28e-14	276	5.36e-13	58	Neighborhood of GNB1	www.broad.mit.e...
Broad MORF_CDK2	View Gene Set	3.597e-13	63	2.603e-12	59	Neighborhood of CDK2	www.broad.mit.e...
Broad GNF2_MKI67	View Gene Set	7.145e-13	26	5.085e-12	60	Neighborhood of MKI67	www.broad.mit.e...
Broad MORF_DDB1	View Gene Set	8.914e-13	220	6.139e-12	61	Neighborhood of DDB1	www.broad.mit.e...
Broad GNF2_MLH1	View Gene Set	8.831e-13	36	6.139e-12	61	Neighborhood of MLH1	www.broad.mit.e...
Broad GCM_ACTG1	View Gene Set	1.04e-12	113	7.05e-12	63	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_PHB	View Gene Set	2.177e-12	112	1.453e-11	64	Neighborhood of PHB	www.broad.mit.e...
Broad GNF2_MSH6	View Gene Set	2.662e-12	30	1.749e-11	65	Neighborhood of MSH6	www.broad.mit.e...
Broad MORF_UNG	View Gene Set	3.073e-12	65	1.988e-11	66	Neighborhood of UNG	www.broad.mit.e...
Broad GCM_CSNK2B	View Gene Set	6.194e-12	88	3.947e-11	67	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_SART1	View Gene Set	6.982e-12	55	4.384e-11	68	Neighborhood of SART1	www.broad.mit.e...
Broad GNF2_SMC2L1	View Gene Set	9.354e-12	30	5.788e-11	69	Neighborhood of SMC2L1	www.broad.mit.e...
Broad GNF2_HAT1	View Gene Set	1.9e-11	45	1.159e-10	70	Neighborhood of HAT1	www.broad.mit.e...
Broad GNF2_KPNB1	View Gene Set	2.398e-11	52	1.442e-10	71	Neighborhood of KPNB1	www.broad.mit.e...
Broad MORF_MSH2	View Gene Set	3.371e-11	52	1.999e-10	72	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_EI24	View Gene Set	5.094e-11	136	2.98e-10	73	Neighborhood of EI24	www.broad.mit.e...
Broad MORF_HDAC1	View Gene Set	5.64e-11	222	3.255e-10	74	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_SMC1L1	View Gene Set	6.261e-11	47	3.565e-10	75	Neighborhood of SMC1L1	www.broad.mit.e...
Broad GNF2_XRCC5	View Gene Set	8.421e-11	61	4.731e-10	76	Neighborhood of XRCC5	www.broad.mit.e...
Broad GNF2_HDAC1	View Gene Set	1.129e-10	85	6.259e-10	77	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_BUB1B	View Gene Set	1.262e-10	61	6.909e-10	78	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_USP5	View Gene Set	1.859e-10	46	1.005e-09	79	Neighborhood of USP5	www.broad.mit.e...
Broad MORF_BUB1	View Gene Set	2.585e-10	49	1.38e-09	80	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_PPP2CA	View Gene Set	3.129e-10	110	1.65e-09	81	Neighborhood of PPP2CA	www.broad.mit.e...
Broad GCM_NPM1	View Gene Set	4.345e-10	108	2.262e-09	82	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_CUL1	View Gene Set	4.55e-10	62	2.341e-09	83	Neighborhood of CUL1	www.broad.mit.e...
Broad MORF_DAP3	View Gene Set	7.222e-10	175	3.671e-09	84	Neighborhood of DAP3	www.broad.mit.e...
Broad MORF_PRKAG1	View Gene Set	9.968e-10	202	5.008e-09	85	Neighborhood of PRKAG1	www.broad.mit.e...
Broad GNF2_DAP3	View Gene Set	1.28e-09	98	6.354e-09	86	Neighborhood of DAP3	www.broad.mit.e...
Broad GNF2_ANP32B	View Gene Set	1.732e-09	29	8.499e-09	87	Neighborhood of ANP32B	www.broad.mit.e...
Broad GNF2_NS	View Gene Set	1.863e-09	35	9.038e-09	88	Neighborhood of NS	www.broad.mit.e...
Broad MORF_NME2	View Gene Set	2.364e-09	145	1.134e-08	89	Neighborhood of NME2	www.broad.mit.e...
Broad MORF_ACTG1	View Gene Set	4.112e-09	134	1.951e-08	90	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_CCNI	View Gene Set	4.568e-09	76	2.143e-08	91	Neighborhood of CCNI	www.broad.mit.e...
Broad GNF2_MSH2	View Gene Set	7.667e-09	26	3.559e-08	92	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_RAD21	View Gene Set	8.376e-09	157	3.846e-08	93	Neighborhood of RAD21	www.broad.mit.e...
Broad MORF_CTBP1	View Gene Set	1.016e-08	149	4.613e-08	94	Neighborhood of CTBP1	www.broad.mit.e...
Broad GNF2_G22P1	View Gene Set	1.047e-08	29	4.705e-08	95	Neighborhood of G22P1	www.broad.mit.e...
Broad GNF2_EIF3S6	View Gene Set	1.425e-08	109	6.337e-08	96	Neighborhood of EIF3S6	www.broad.mit.e...
Broad GNF2_RBBP6	View Gene Set	1.685e-08	54	7.419e-08	97	Neighborhood of RBBP6	www.broad.mit.e...
Broad MORF_PTPN11	View Gene Set	1.9e-08	93	8.278e-08	98	Neighborhood of PTPN11	www.broad.mit.e...
Broad MORF_GSPT1	View Gene Set	1.941e-08	41	8.37e-08	99	Neighborhood of GSPT1	www.broad.mit.e...
Broad MORF_EIF3S6	View Gene Set	2.054e-08	108	8.769e-08	100	Neighborhood of EIF3S6	www.broad.mit.e...
Broad MORF_CDC16	View Gene Set	2.584e-08	67	1.092e-07	101	Neighborhood of CDC16	www.broad.mit.e...
Broad MORF_GMPS	View Gene Set	2.613e-08	48	1.094e-07	102	Neighborhood of GMPS	www.broad.mit.e...
Broad MORF_RAF1	View Gene Set	2.65e-08	94	1.099e-07	103	Neighborhood of RAF1	www.broad.mit.e...
Broad MORF_EIF4A2	View Gene Set	2.836e-08	120	1.142e-07	104	Neighborhood of EIF4A2	www.broad.mit.e...
Broad MORF_UBE2N	View Gene Set	2.801e-08	79	1.142e-07	104	Neighborhood of UBE2N	www.broad.mit.e...
Broad GNF2_TDG	View Gene Set	2.819e-08	23	1.142e-07	104	Neighborhood of TDG	www.broad.mit.e...
Broad MORF_MAP2K2	View Gene Set	4.021e-08	123	1.605e-07	107	Neighborhood of MAP2K2	www.broad.mit.e...
Broad MORF_TERF1	View Gene Set	4.762e-08	57	1.883e-07	108	Neighborhood of TERF1	www.broad.mit.e...
Broad MORF_CDC10	View Gene Set	5.737e-08	120	2.247e-07	109	Neighborhood of CDC10	www.broad.mit.e...
Broad GNF2_ST13	View Gene Set	7.169e-08	56	2.783e-07	110	Neighborhood of ST13	www.broad.mit.e...
Broad GCM_PPP1CC	View Gene Set	7.551e-08	47	2.905e-07	111	Neighborhood of PPP1CC	www.broad.mit.e...
Broad MORF_SNRP70	View Gene Set	1.306e-07	50	4.98e-07	112	Neighborhood of SNRP70	www.broad.mit.e...
Broad MORF_ERH	View Gene Set	1.668e-07	103	6.304e-07	113	Neighborhood of ERH	www.broad.mit.e...
Broad GNF2_ELAC2	View Gene Set	1.923e-07	32	7.204e-07	114	Neighborhood of ELAC2	www.broad.mit.e...
Broad GCM_RAF1	View Gene Set	2.562e-07	34	9.513e-07	115	Neighborhood of RAF1	www.broad.mit.e...
Broad GCM_CBFB	View Gene Set	2.723e-07	59	1.002e-06	116	Neighborhood of CBFB	www.broad.mit.e...
Broad GNF2_DENR	View Gene Set	3.417e-07	39	1.247e-06	117	Neighborhood of DENR	www.broad.mit.e...
Broad GNF2_RPA1	View Gene Set	4.801e-07	20	1.737e-06	118	Neighborhood of RPA1	www.broad.mit.e...
Broad MORF_DEAF1	View Gene Set	5.153e-07	54	1.849e-06	119	Neighborhood of DEAF1	www.broad.mit.e...
Broad GCM_PSME1	View Gene Set	5.854e-07	76	2.083e-06	120	Neighborhood of PSME1	www.broad.mit.e...
Broad GCM_DDX5	View Gene Set	1.138e-06	52	4.015e-06	121	Neighborhood of DDX5	www.broad.mit.e...
Broad MORF_RPA1	View Gene Set	1.497e-06	55	5.24e-06	122	Neighborhood of RPA1	www.broad.mit.e...
Broad GNF2_PPP6C	View Gene Set	2.326e-06	33	8.076e-06	123	Neighborhood of PPP6C	www.broad.mit.e...
Broad MORF_CCNF	View Gene Set	2.449e-06	65	8.434e-06	124	Neighborhood of CCNF	www.broad.mit.e...
Broad GNF2_BUB3	View Gene Set	3.025e-06	22	1.033e-05	125	Neighborhood of BUB3	www.broad.mit.e...
Broad GCM_ANP32B	View Gene Set	3.823e-06	32	1.295e-05	126	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_PSMC1	View Gene Set	4.067e-06	162	1.367e-05	127	Neighborhood of PSMC1	www.broad.mit.e...
Broad MORF_PPP1CA	View Gene Set	9.427e-06	145	3.145e-05	128	Neighborhood of PPP1CA	www.broad.mit.e...
Broad MORF_SKP1A	View Gene Set	9.873e-06	175	3.268e-05	129	Neighborhood of SKP1A	www.broad.mit.e...
Broad MORF_AP2M1	View Gene Set	1.303e-05	197	4.26e-05	130	Neighborhood of AP2M1	www.broad.mit.e...
Broad GNF2_UBE2I	View Gene Set	1.307e-05	33	4.26e-05	130	Neighborhood of UBE2I	www.broad.mit.e...
Broad MORF_MTA1	View Gene Set	1.511e-05	95	4.886e-05	132	Neighborhood of MTA1	www.broad.mit.e...
Broad MORF_FANCG	View Gene Set	1.594e-05	148	5.116e-05	133	Neighborhood of FANCG	www.broad.mit.e...
Broad GCM_DFFA	View Gene Set	1.666e-05	100	5.308e-05	134	Neighborhood of DFFA	www.broad.mit.e...
Broad MORF_TPT1	View Gene Set	1.989e-05	100	6.292e-05	135	Neighborhood of TPT1	www.broad.mit.e...
Broad MORF_TERF2IP	View Gene Set	3.168e-05	99	9.947e-05	136	Neighborhood of TERF2IP	www.broad.mit.e...
Broad GCM_MYST2	View Gene Set	3.55e-05	138	0.0001106	137	Neighborhood of MYST2	www.broad.mit.e...
Broad MORF_BMI1	View Gene Set	3.796e-05	71	0.0001175	138	Neighborhood of BMI1	www.broad.mit.e...
Broad GCM_RAD21	View Gene Set	4.23e-05	30	0.0001299	139	Neighborhood of RAD21	www.broad.mit.e...
Broad GNF2_SMC1L1	View Gene Set	5.428e-05	24	0.0001655	140	Neighborhood of SMC1L1	www.broad.mit.e...
Broad MORF_SS18	View Gene Set	7.383e-05	55	0.0002236	141	Neighborhood of SS18	www.broad.mit.e...
Broad GCM_PFN1	View Gene Set	7.911e-05	47	0.0002379	142	Neighborhood of PFN1	www.broad.mit.e...
Broad MORF_RFC1	View Gene Set	0.0004193	98	0.001252	143	Neighborhood of RFC1	www.broad.mit.e...
Broad MORF_EIF4E	View Gene Set	0.000425	76	0.00126	144	Neighborhood of EIF4E	www.broad.mit.e...
Broad MORF_AP3D1	View Gene Set	0.0005244	119	0.001544	145	Neighborhood of AP3D1	www.broad.mit.e...
Broad GCM_TPT1	View Gene Set	0.0005587	69	0.001634	146	Neighborhood of TPT1	www.broad.mit.e...
Broad GCM_SMARCC1	View Gene Set	0.000664	33	0.001929	147	Neighborhood of SMARCC1	www.broad.mit.e...
Broad GCM_MAX	View Gene Set	0.0009268	28	0.002674	148	Neighborhood of MAX	www.broad.mit.e...
Broad MORF_RAD23B	View Gene Set	0.001463	159	0.004192	149	Neighborhood of RAD23B	www.broad.mit.e...
Broad MORF_JUND	View Gene Set	0.001604	63	0.004566	150	Neighborhood of JUND	www.broad.mit.e...
Broad GCM_AIP	View Gene Set	0.001998	36	0.00565	151	Neighborhood of AIP	www.broad.mit.e...
Broad GCM_DENR	View Gene Set	0.002042	40	0.005735	152	Neighborhood of DENR	www.broad.mit.e...
Broad GCM_NF2	View Gene Set	0.002185	235	0.006099	153	Neighborhood of NF2	www.broad.mit.e...
Broad GCM_PPM1D	View Gene Set	0.00221	22	0.006128	154	Neighborhood of PPM1D	www.broad.mit.e...
Broad GCM_MLL	View Gene Set	0.002229	130	0.006142	155	Neighborhood of MLL	www.broad.mit.e...
Broad MORF_IKBKG	View Gene Set	0.002372	119	0.006492	156	Neighborhood of IKBKG	www.broad.mit.e...
Broad MORF_FDXR	View Gene Set	0.003229	205	0.008782	157	Neighborhood of FDXR	www.broad.mit.e...
Broad GCM_TPR	View Gene Set	0.00352	29	0.009513	158	Neighborhood of TPR	www.broad.mit.e...
Broad MORF_ORC1L	View Gene Set	0.003799	61	0.01015	159	Neighborhood of ORC1L	www.broad.mit.e...
Broad GCM_FANCC	View Gene Set	0.003805	120	0.01015	159	Neighborhood of FANCC	www.broad.mit.e...
Broad GCM_RBM8A	View Gene Set	0.004032	64	0.01069	161	Neighborhood of RBM8A	www.broad.mit.e...
Broad MORF_TPR	View Gene Set	0.004115	131	0.01085	162	Neighborhood of TPR	www.broad.mit.e...
Broad MORF_REV3L	View Gene Set	0.004466	52	0.0117	163	Neighborhood of REV3L	www.broad.mit.e...
Broad GCM_PRKCG	View Gene Set	0.005059	60	0.01317	164	Neighborhood of PRKCG	www.broad.mit.e...
Broad GCM_UBE2N	View Gene Set	0.005167	125	0.01337	165	Neighborhood of UBE2N	www.broad.mit.e...
Broad MORF_SP3	View Gene Set	0.005406	69	0.0139	166	Neighborhood of SP3	www.broad.mit.e...
Broad GNF2_GLTSCR2	View Gene Set	0.005511	31	0.01409	167	Neighborhood of GLTSCR2	www.broad.mit.e...
Broad MORF_PTEN	View Gene Set	0.006361	80	0.01617	168	Neighborhood of PTEN	www.broad.mit.e...
Broad MORF_PPP5C	View Gene Set	0.00984	81	0.02486	169	Neighborhood of PPP5C	www.broad.mit.e...
Broad GCM_CASP2	View Gene Set	0.01024	21	0.02572	170	Neighborhood of CASP2	www.broad.mit.e...
Broad GCM_HBP1	View Gene Set	0.01064	54	0.02658	171	Neighborhood of HBP1	www.broad.mit.e...
Broad MORF_HEAB	View Gene Set	0.01089	71	0.02704	172	Neighborhood of HEAB	www.broad.mit.e...
Broad MORF_RBBP8	View Gene Set	0.01148	190	0.02834	173	Neighborhood of RBBP8	www.broad.mit.e...
Broad GCM_RING1	View Gene Set	0.01171	106	0.02874	174	Neighborhood of RING1	www.broad.mit.e...
Broad GCM_ZNF198	View Gene Set	0.0123	98	0.03002	175	Neighborhood of ZNF198	www.broad.mit.e...
Broad MORF_DDX11	View Gene Set	0.01355	138	0.03286	176	Neighborhood of DDX11	www.broad.mit.e...
Broad MORF_RFC5	View Gene Set	0.01398	69	0.03373	177	Neighborhood of RFC5	www.broad.mit.e...
Broad MORF_BECN1	View Gene Set	0.01412	93	0.03387	178	Neighborhood of BECN1	www.broad.mit.e...
Broad GCM_CSNK1A1	View Gene Set	0.01644	28	0.03923	179	Neighborhood of CSNK1A1	www.broad.mit.e...
Broad GCM_HDAC1	View Gene Set	0.01823	30	0.04325	180	Neighborhood of HDAC1	www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad module_54	View Gene Set	1.085e-27	242	4.928e-25	1	Genes in module_54	www.broad.mit.e...
Broad module_198	View Gene Set	5.361e-21	288	1.217e-18	2	Genes in module_198	www.broad.mit.e...
Broad module_252	View Gene Set	2.66e-19	224	4.025e-17	3	Genes in module_252	www.broad.mit.e...
Broad module_98	View Gene Set	1.991e-18	375	2.26e-16	4	Genes in module_98	www.broad.mit.e...
Broad module_17	View Gene Set	5.711e-18	351	5.185e-16	5	Genes in module_17	www.broad.mit.e...
Broad module_32	View Gene Set	7.115e-18	227	5.384e-16	6	Genes in module_32	www.broad.mit.e...
Broad module_244	View Gene Set	7.229e-13	182	4.689e-11	7	Genes in module_244	www.broad.mit.e...
Broad module_183	View Gene Set	2.856e-10	52	1.621e-08	8	Genes in module_183	www.broad.mit.e...
Broad module_126	View Gene Set	4.369e-10	173	2.204e-08	9	Genes in module_126	www.broad.mit.e...
Broad module_57	View Gene Set	2.872e-09	54	1.304e-07	10	Genes in module_57	www.broad.mit.e...
Broad module_124	View Gene Set	1.35e-08	92	5.573e-07	11	Genes in module_124	www.broad.mit.e...
Broad module_158	View Gene Set	2.267e-08	41	7.983e-07	12	Genes in module_158	www.broad.mit.e...
Broad module_403	View Gene Set	2.286e-08	44	7.983e-07	12	Genes in module_403	www.broad.mit.e...
Broad module_91	View Gene Set	3.252e-08	37	1.055e-06	14	Genes in module_91	www.broad.mit.e...
Broad module_3	View Gene Set	4.929e-08	374	1.399e-06	15	Genes in module_3	www.broad.mit.e...
Broad module_397	View Gene Set	4.782e-08	114	1.399e-06	15	Genes in module_397	www.broad.mit.e...
Broad module_125	View Gene Set	7.308e-08	42	1.952e-06	17	Genes in module_125	www.broad.mit.e...
Broad module_28	View Gene Set	8.487e-08	32	2.141e-06	18	Genes in module_28	www.broad.mit.e...
Broad module_337	View Gene Set	1.081e-07	59	2.583e-06	19	Genes in module_337	www.broad.mit.e...
Broad module_115	View Gene Set	2.285e-07	27	5.187e-06	20	Genes in module_115	www.broad.mit.e...
Broad module_61	View Gene Set	6.363e-07	50	1.376e-05	21	Genes in module_61	www.broad.mit.e...
Broad module_278	View Gene Set	1.25e-06	34	2.58e-05	22	Genes in module_278	www.broad.mit.e...
Broad module_219	View Gene Set	1.316e-06	26	2.597e-05	23	Genes in module_219	www.broad.mit.e...
Broad module_392	View Gene Set	1.428e-06	18	2.701e-05	24	Genes in module_392	www.broad.mit.e...
Broad module_315	View Gene Set	1.862e-06	15	3.382e-05	25	Genes in module_315	www.broad.mit.e...
Broad module_197	View Gene Set	1.971e-06	170	3.442e-05	26	Genes in module_197	www.broad.mit.e...
Broad module_18	View Gene Set	2.379e-06	434	4e-05	27	Genes in module_18	www.broad.mit.e...
Broad module_35	View Gene Set	3.45e-06	16	5.595e-05	28	Genes in module_35	www.broad.mit.e...
Broad module_352	View Gene Set	4.916e-06	17	7.696e-05	29	Genes in module_352	www.broad.mit.e...
Broad module_110	View Gene Set	7.972e-06	15	0.0001206	30	Genes in module_110	www.broad.mit.e...
Broad module_451	View Gene Set	8.767e-06	29	0.0001284	31	Genes in module_451	www.broad.mit.e...
Broad module_102	View Gene Set	1.365e-05	18	0.0001878	32	Genes in module_102	www.broad.mit.e...
Broad module_133	View Gene Set	1.358e-05	15	0.0001878	32	Genes in module_133	www.broad.mit.e...
Broad module_160	View Gene Set	1.426e-05	15	0.0001904	34	Genes in module_160	www.broad.mit.e...
Broad module_127	View Gene Set	1.578e-05	26	0.000199	35	Genes in module_127	www.broad.mit.e...
Broad module_189	View Gene Set	1.567e-05	23	0.000199	35	Genes in module_189	www.broad.mit.e...
Broad module_81	View Gene Set	2.133e-05	20	0.0002617	37	Genes in module_81	www.broad.mit.e...
Broad module_320	View Gene Set	2.502e-05	19	0.0002989	38	Genes in module_320	www.broad.mit.e...
Broad module_149	View Gene Set	3.084e-05	36	0.0003591	39	Genes in module_149	www.broad.mit.e...
Broad module_83	View Gene Set	3.502e-05	296	0.0003975	40	Genes in module_83	www.broad.mit.e...
Broad module_552	View Gene Set	9.119e-05	18	0.00101	41	Genes in module_552	www.broad.mit.e...
Broad module_388	View Gene Set	0.0001496	17	0.001617	42	Genes in module_388	www.broad.mit.e...
Broad module_16	View Gene Set	0.0001586	495	0.001675	43	Genes in module_16	www.broad.mit.e...
Broad module_90	View Gene Set	0.0001654	17	0.001706	44	Genes in module_90	www.broad.mit.e...
Broad module_457	View Gene Set	0.000189	9	0.001907	45	Genes in module_457	www.broad.mit.e...
Broad module_421	View Gene Set	0.0002462	23	0.00243	46	Genes in module_421	www.broad.mit.e...
Broad module_203	View Gene Set	0.000341	16	0.003294	47	Genes in module_203	www.broad.mit.e...
Broad module_159	View Gene Set	0.0003625	81	0.003428	48	Genes in module_159	www.broad.mit.e...
Broad module_50	View Gene Set	0.0003803	13	0.003524	49	Genes in module_50	www.broad.mit.e...
Broad module_204	View Gene Set	0.0006182	82	0.005613	50	Genes in module_204	www.broad.mit.e...
Broad module_168	View Gene Set	0.0006765	22	0.006022	51	Genes in module_168	www.broad.mit.e...
Broad module_222	View Gene Set	0.0007002	22	0.006113	52	Genes in module_222	www.broad.mit.e...
Broad module_355	View Gene Set	0.001089	28	0.009327	53	Genes in module_355	www.broad.mit.e...
Broad module_432	View Gene Set	0.0012	15	0.01009	54	Genes in module_432	www.broad.mit.e...
Broad module_53	View Gene Set	0.001252	389	0.01034	55	Genes in module_53	www.broad.mit.e...
Broad module_299	View Gene Set	0.001587	33	0.01287	56	Genes in module_299	www.broad.mit.e...
Broad module_89	View Gene Set	0.002285	14	0.0182	57	Genes in module_89	www.broad.mit.e...
Broad module_155	View Gene Set	0.002943	25	0.02294	58	Genes in module_155	www.broad.mit.e...
Broad module_538	View Gene Set	0.002981	8	0.02294	58	Genes in module_538	www.broad.mit.e...
Broad module_8	View Gene Set	0.003249	403	0.02426	60	Genes in module_8	www.broad.mit.e...
Broad module_233	View Gene Set	0.00326	22	0.02426	60	Genes in module_233	www.broad.mit.e...
Broad module_534	View Gene Set	0.003766	15	0.02758	62	Genes in module_534	www.broad.mit.e...
Broad module_528	View Gene Set	0.004252	10	0.03064	63	Genes in module_528	www.broad.mit.e...
Broad module_450	View Gene Set	0.006049	9	0.04291	64	Genes in module_450	www.broad.mit.e...
Broad module_56	View Gene Set	0.006568	12	0.0455	65	Genes in module_56	www.broad.mit.e...
Broad module_447	View Gene Set	0.006614	35	0.0455	65	Genes in module_447	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	2.288e-25	1197	1.888e-22	1	Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS	View Gene Set	2.151e-20	801	8.874e-18	2	Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad RNA_PROCESSING	View Gene Set	6.001e-20	147	1.65e-17	3	Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS	View Gene Set	4.421e-15	1623	9.118e-13	4	Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad CELL_CYCLE_PROCESS	View Gene Set	1.383e-14	187	2.283e-12	5	Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad M_PHASE	View Gene Set	1.192e-12	111	1.64e-10	6	Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division.	www.broad.mit.e...
Broad RNA_SPLICING	View Gene Set	4.262e-12	73	5.023e-10	7	Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.	www.broad.mit.e...
Broad CELL_CYCLE_PHASE	View Gene Set	2.407e-11	167	2.482e-09	8	Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE	View Gene Set	9.966e-11	83	9.136e-09	9	Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place.	www.broad.mit.e...
Broad MITOSIS	View Gene Set	2.904e-10	81	2.396e-08	10	Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother.	www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397	View Gene Set	3.323e-10	59	2.492e-08	11	Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE	View Gene Set	6.434e-10	148	3.792e-08	12	Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent.	www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049	View Gene Set	6.061e-10	304	3.792e-08	12	Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.	www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS	View Gene Set	5.718e-10	70	3.792e-08	12	Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY	View Gene Set	2.83e-09	74	1.557e-07	15	Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together.	www.broad.mit.e...
Broad TRANSCRIPTION	View Gene Set	6.309e-09	738	3.253e-07	16	Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT	View Gene Set	1.336e-08	623	6.482e-07	17	Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA.	www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS	View Gene Set	1.932e-08	625	8.857e-07	18	Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.	www.broad.mit.e...
Broad TRANSLATION	View Gene Set	7.881e-08	177	3.422e-06	19	Genes annotated by the GO term GO:0006412. The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.	www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS	View Gene Set	2.155e-07	253	8.891e-06	20	Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides.	www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY	View Gene Set	6.652e-07	59	2.613e-05	21	Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.	www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	3.352e-06	449	0.0001257	22	Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY	View Gene Set	3.945e-06	271	0.0001308	23	Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex.	www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION	View Gene Set	3.964e-06	660	0.0001308	23	Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.	www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS	View Gene Set	3.858e-06	117	0.0001308	23	Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.	www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	7.099e-06	601	0.0002253	26	Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY	View Gene Set	7.69e-06	14	0.000235	27	Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis.	www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	1.739e-05	10	0.0005123	28	Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart.	www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_TRANSPORT	View Gene Set	2.155e-05	31	0.0005927	29	Genes annotated by the GO term GO:0015931. The directed movement of nucleobases nucleosides nucleotides and nucleic acids into out of within or between cells.	www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY	View Gene Set	2.135e-05	288	0.0005927	29	Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell.	www.broad.mit.e...
Broad DNA_REPLICATION	View Gene Set	2.235e-05	101	0.0005949	31	Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.	www.broad.mit.e...
Broad RRNA_METABOLIC_PROCESS	View Gene Set	2.384e-05	12	0.0006146	32	Genes annotated by the GO term GO:0016072. The chemical reactions and pathways involving rRNA ribosomal RNA a structural constituent of ribosomes.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	2.946e-05	767	0.0007348	33	Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad RRNA_PROCESSING	View Gene Set	3.1e-05	11	0.0007348	33	Genes annotated by the GO term GO:0006364. Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.	www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS	View Gene Set	3.117e-05	779	0.0007348	33	Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism.	www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS	View Gene Set	3.338e-05	27	0.000765	36	Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions.	www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	4.194e-05	9	0.0009353	37	Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle.	www.broad.mit.e...
Broad CELLULAR_BIOSYNTHETIC_PROCESS	View Gene Set	4.843e-05	311	0.001052	38	Genes annotated by the GO term GO:0044249. The chemical reactions and pathways resulting in the formation of substances carried out by individual cells.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION	View Gene Set	6.685e-05	555	0.001414	39	Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad DNA_REPAIR	View Gene Set	8.65e-05	123	0.001784	40	Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway.	www.broad.mit.e...
Broad SISTER_CHROMATID_SEGREGATION	View Gene Set	9.884e-05	17	0.001989	41	Genes annotated by the GO term GO:0000819. The process by which sister chromatids are organized and then physically separated and apportioned to two or more sets.	www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS	View Gene Set	0.0001019	197	0.002001	42	Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus.	www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075	View Gene Set	0.0001088	47	0.002087	43	Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage.	www.broad.mit.e...
Broad NUCLEOCYTOPLASMIC_TRANSPORT	View Gene Set	0.000114	83	0.002138	44	Genes annotated by the GO term GO:0006913. The directed movement of molecules between the nucleus and the cytoplasm.	www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS	View Gene Set	0.0001355	159	0.002484	45	Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.	www.broad.mit.e...
Broad NUCLEAR_TRANSPORT	View Gene Set	0.0001923	84	0.003449	46	Genes annotated by the GO term GO:0051169. The directed movement of substances into out of or within the nucleus.	www.broad.mit.e...
Broad MITOTIC_SISTER_CHROMATID_SEGREGATION	View Gene Set	0.0002	16	0.003511	47	Genes annotated by the GO term GO:0000070. The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome composed of two sister chromatids aligns at the cell equator paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.	www.broad.mit.e...
Broad RNA_EXPORT_FROM_NUCLEUS	View Gene Set	0.0002112	20	0.003556	48	Genes annotated by the GO term GO:0006405. The directed movement of RNA from the nucleus to the cytoplasm.	www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	0.0002104	457	0.003556	48	Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad TRANSLATIONAL_INITIATION	View Gene Set	0.0002458	39	0.004005	50	Genes annotated by the GO term GO:0006413. The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome mRNA and an initiation complex that contains the first aminoacyl-tRNA.	www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0002524	34	0.004005	50	Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT	View Gene Set	0.0002511	452	0.004005	50	Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription.	www.broad.mit.e...
Broad NUCLEAR_EXPORT	View Gene Set	0.0002795	31	0.004351	53	Genes annotated by the GO term GO:0051168. The directed movement of substances out of the nucleus.	www.broad.mit.e...
Broad TRNA_METABOLIC_PROCESS	View Gene Set	0.0003789	18	0.005788	54	Genes annotated by the GO term GO:0006399. The chemical reactions and pathways involving tRNA transfer RNA a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases the function of which has not been completely established.	www.broad.mit.e...
Broad REGULATION_OF_MITOSIS	View Gene Set	0.0004029	40	0.006043	55	Genes annotated by the GO term GO:0007088. Any process that modulates the frequency rate or extent of mitosis.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.0005688	285	0.008379	56	Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter.	www.broad.mit.e...
Broad DNA_RECOMBINATION	View Gene Set	0.0006739	47	0.009754	57	Genes annotated by the GO term GO:0006310. The processes by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment intrachromosomal recombination or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation conjugation transduction or F-duction.	www.broad.mit.e...
Broad MEIOTIC_CELL_CYCLE	View Gene Set	0.0009036	34	0.01285	58	Genes annotated by the GO term GO:0051321. Progression through the phases of the meiotic cell cycle in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell.	www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.001155	458	0.01615	59	Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell.	www.broad.mit.e...
Broad BASE_EXCISION_REPAIR	View Gene Set	0.001326	16	0.01823	60	Genes annotated by the GO term GO:0006284. In base excision repair an altered base is removed by a DNA glycosylase enzyme followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.	www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.001513	16	0.02046	61	Genes annotated by the GO term GO:0031023. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a microtubule organizing center a structure from which microtubules grow.	www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT	View Gene Set	0.001617	23	0.02152	62	Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure.	www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION	View Gene Set	0.001701	31	0.02227	63	Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets.	www.broad.mit.e...
Broad NLS_BEARING_SUBSTRATE_IMPORT_INTO_NUCLEUS	View Gene Set	0.00178	12	0.02295	64	Genes annotated by the GO term GO:0006607. The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus across the nuclear membrane.	www.broad.mit.e...
Broad HISTONE_MODIFICATION	View Gene Set	0.00185	22	0.02348	65	Genes annotated by the GO term GO:0016570. The covalent alteration of one or more amino acid residues within a histone protein.	www.broad.mit.e...
Broad PROTEIN_DNA_COMPLEX_ASSEMBLY	View Gene Set	0.002006	48	0.02508	66	Genes annotated by the GO term GO:0065004. The aggregation arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.	www.broad.mit.e...
Broad DNA_REPLICATION_INITIATION	View Gene Set	0.002127	15	0.02619	67	Genes annotated by the GO term GO:0006270. The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix the recruitment of DNA polymerases and the initiation of polymerase action.	www.broad.mit.e...
Broad CELL_DIVISION	View Gene Set	0.00251	21	0.03045	68	Genes annotated by the GO term GO:0051301. The processes resulting in the physical partitioning and separation of a cell into daughter cells.	www.broad.mit.e...
Broad TRANSCRIPTION_INITIATION	View Gene Set	0.002569	35	0.03072	69	Genes annotated by the GO term GO:0006352. Processes involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template resulting in the subsequent synthesis of RNA from that promoter.	www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE	View Gene Set	0.002705	72	0.03188	70	Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin.	www.broad.mit.e...
Broad COVALENT_CHROMATIN_MODIFICATION	View Gene Set	0.003357	23	0.039	71	Genes annotated by the GO term GO:0016569. The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups.	www.broad.mit.e...
Broad MEIOSIS_I	View Gene Set	0.003435	19	0.03936	72	Genes annotated by the GO term GO:0007127. Progression through the first phase of meiosis in which cells divide and homologous chromosomes are paired and segregated from each other producing two daughter cells.	www.broad.mit.e...
Broad REGULATION_OF_TRANSLATIONAL_INITIATION	View Gene Set	0.003749	31	0.04236	73	Genes annotated by the GO term GO:0006446. Any process that modulates the frequency rate or extent of translational initiation.	www.broad.mit.e...
Broad TRNA_PROCESSING	View Gene Set	0.003974	10	0.04431	74	Genes annotated by the GO term GO:0008033. The process by which a pre-tRNA molecule is converted to a mature tRNA ready for addition of an aminoacyl group.	www.broad.mit.e...
Broad ANDROGEN_RECEPTOR_SIGNALING_PATHWAY	View Gene Set	0.00419	12	0.04608	75	Genes annotated by the GO term GO:0030521. Any series of molecular signals generated as a consequence of an androgen binding to its receptor.	www.broad.mit.e...
Broad CENTROSOME_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.004554	15	0.04943	76	Genes annotated by the GO term GO:0051297. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a centrosome a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized.	www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEUS	View Gene Set	3.313e-39	1353	7.72e-37	1	Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent.	www.broad.mit.e...
Broad NUCLEAR_PART	View Gene Set	1.102e-31	543	1.284e-29	2	Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	www.broad.mit.e...
Broad NUCLEAR_LUMEN	View Gene Set	2.672e-17	365	2.075e-15	3	Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane.	www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART	View Gene Set	1.064e-15	1144	6.201e-14	4	Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad ORGANELLE_PART	View Gene Set	2.747e-15	1149	9.145e-14	5	Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad ORGANELLE_LUMEN	View Gene Set	2.393e-15	434	9.145e-14	5	Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen.	www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN	View Gene Set	2.393e-15	434	9.145e-14	5	Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	1.806e-14	129	5.26e-13	8	Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules.	www.broad.mit.e...
Broad NUCLEOLUS	View Gene Set	4.478e-12	116	1.159e-10	9	Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX	View Gene Set	1.118e-11	914	2.605e-10	10	Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together.	www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	1.378e-11	613	2.675e-10	11	Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	1.378e-11	613	2.675e-10	11	Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad CHROMOSOME	View Gene Set	3.533e-10	122	6.332e-09	13	Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad CHROMOSOMAL_PART	View Gene Set	1.388e-09	95	2.31e-08	14	Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad NUCLEOPLASM	View Gene Set	7.119e-09	266	1.106e-07	15	Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad SPLICEOSOME	View Gene Set	1.51e-08	44	2.199e-07	16	Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron.	www.broad.mit.e...
Broad PORE_COMPLEX	View Gene Set	4.6e-07	34	6.305e-06	17	Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids.	www.broad.mit.e...
Broad NUCLEAR_PORE	View Gene Set	5.533e-07	29	7.163e-06	18	Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined.	www.broad.mit.e...
Broad NUCLEOPLASM_PART	View Gene Set	6.196e-07	202	7.598e-06	19	Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad SPINDLE	View Gene Set	1.471e-06	37	1.713e-05	20	Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART	View Gene Set	2.068e-06	40	2.295e-05	21	Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE	View Gene Set	3.033e-06	48	3.212e-05	22	Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.	www.broad.mit.e...
Broad PROTEIN_COMPLEX	View Gene Set	3.654e-06	799	3.702e-05	23	Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad NUCLEOLAR_PART	View Gene Set	4.842e-06	16	4.701e-05	24	Genes annotated by the GO term GO:0044452. Any constituent part of a nucleolus a small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis.	www.broad.mit.e...
Broad NUCLEAR_ENVELOPE	View Gene Set	6.489e-06	71	6.047e-05	25	Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space).	www.broad.mit.e...
Broad PROTEASOME_COMPLEX	View Gene Set	7.824e-06	23	7.011e-05	26	Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.	www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION	View Gene Set	9.524e-06	31	8.219e-05	27	Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME	View Gene Set	1.038e-05	53	8.638e-05	28	Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad CONDENSED_CHROMOSOME	View Gene Set	1.591e-05	32	0.0001278	29	Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.	www.broad.mit.e...
Broad CONDENSED_NUCLEAR_CHROMOSOME	View Gene Set	1.952e-05	17	0.0001516	30	Genes annotated by the GO term GO:0000794. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus.	www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	2.466e-05	20	0.0001853	31	Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs.	www.broad.mit.e...
Broad ENVELOPE	View Gene Set	8.344e-05	165	0.0005891	32	Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers.	www.broad.mit.e...
Broad ORGANELLE_ENVELOPE	View Gene Set	8.344e-05	165	0.0005891	32	Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes.	www.broad.mit.e...
Broad KINETOCHORE	View Gene Set	9.44e-05	25	0.0006469	34	Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART	View Gene Set	0.0002742	33	0.001825	35	Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad SPINDLE_MICROTUBULE	View Gene Set	0.0003884	15	0.002514	36	Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.	www.broad.mit.e...
Broad EUKARYOTIC_TRANSLATION_INITIATION_FACTOR_3_COMPLEX	View Gene Set	0.0004413	10	0.002779	37	Genes annotated by the GO term GO:0005852. A complex of several polypeptides that plays at least two important roles in protein synthesis: First eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex.	www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	0.0004715	9	0.002891	38	Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA.	www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER	View Gene Set	0.000561	64	0.003352	39	Genes annotated by the GO term GO:0005815. A region in a eukaryotic cell such as a centrosome or basal body from which microtubules grow.	www.broad.mit.e...
Broad CENTROSOME	View Gene Set	0.0008938	55	0.005206	40	Genes annotated by the GO term GO:0005813. A structure comprised of a core structure (in most organisms a pair of centrioles) and peripheral material from which a microtubule-based structure such as a spindle apparatus is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells though in animal cells it changes continually during the cell-division cycle.	www.broad.mit.e...
Broad SPINDLE_POLE	View Gene Set	0.0009487	17	0.005391	41	Genes annotated by the GO term GO:0000922. Either of the ends of a spindle where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules spindle microtubules and astral microtubules.	www.broad.mit.e...
Broad MICROTUBULE	View Gene Set	0.002249	31	0.01248	42	Genes annotated by the GO term GO:0005874. Any of the long generally straight hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation e.g. in the spindle.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_COMPLEX	View Gene Set	0.002392	84	0.01296	43	Genes annotated by the GO term GO:0005667. Any complex distinct from RNA polymerase including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences and regulating transcription.	www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME	View Gene Set	0.00259	22	0.01341	44	Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle.	www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME	View Gene Set	0.00259	22	0.01341	44	Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes.	www.broad.mit.e...
Broad RIBOSOMAL_SUBUNIT	View Gene Set	0.002778	20	0.01407	46	Genes annotated by the GO term GO:0033279. Either of the two ribonucleoprotein complexes that associate to form a ribosome.	www.broad.mit.e...
Broad CHROMATIN	View Gene Set	0.003953	35	0.0196	47	Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome.	www.broad.mit.e...
Broad RIBOSOME	View Gene Set	0.004417	39	0.02144	48	Genes annotated by the GO term GO:0005840. An intracellular organelle about 200 A in diameter consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits one large and one small each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients expressed in Svedberg units (symbol: S). Hence the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes eukaryotes mitochondria and chloroplasts have characteristically distinct ribosomal proteins.	www.broad.mit.e...
Broad REPLICATION_FORK	View Gene Set	0.005765	18	0.02741	49	Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad ORGANELLAR_SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.006612	11	0.02796	50	Genes annotated by the GO term GO:0000314. The smaller of the two subunits of an organellar ribosome.	www.broad.mit.e...
Broad MITOCHONDRIAL_SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.006612	11	0.02796	50	Genes annotated by the GO term GO:0005763. The smaller of the two subunits of a mitochondrial ribosome.	www.broad.mit.e...
Broad MEDIATOR_COMPLEX	View Gene Set	0.006206	18	0.02796	50	Genes annotated by the GO term GO:0000119. A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription.	www.broad.mit.e...
Broad CELL_CORTEX_PART	View Gene Set	0.006144	24	0.02796	50	Genes annotated by the GO term GO:0044448. Any constituent part of the cell cortex the region of a cell that lies just beneath the plasma membrane and often but not always contains a network of actin filaments and associated proteins.	www.broad.mit.e...
Broad CELL_CORTEX	View Gene Set	0.006277	38	0.02796	50	Genes annotated by the GO term GO:0005938. The region of a cell that lies just beneath the plasma membrane and often but not always contains a network of actin filaments and associated proteins.	www.broad.mit.e...
Broad NUCLEAR_CHROMATIN	View Gene Set	0.00672	14	0.02796	50	Genes annotated by the GO term GO:0000790. The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus.	www.broad.mit.e...
Broad SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.006612	11	0.02796	50	Genes annotated by the GO term GO:0015935. The smaller of the two subunits of a ribosome.	www.broad.mit.e...
Broad CYTOSKELETAL_PART	View Gene Set	0.009343	231	0.03819	57	Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice.	www.broad.mit.e...
Broad CORTICAL_CYTOSKELETON	View Gene Set	0.009824	20	0.03946	58	Genes annotated by the GO term GO:0030863. The portion of the cytoskeleton that lies just beneath the plasma membrane.	www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad RNA_BINDING	View Gene Set	6.001e-19	236	2.376e-16	1	Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof.	www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING	View Gene Set	2.557e-09	39	3.376e-07	2	Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome.	www.broad.mit.e...
Broad DNA_BINDING	View Gene Set	2.439e-09	587	3.376e-07	2	Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid).	www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY	View Gene Set	1.213e-08	41	1.201e-06	4	Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome.	www.broad.mit.e...
Broad TRANSLATION_INITIATION_FACTOR_ACTIVITY	View Gene Set	4.971e-08	24	3.937e-06	5	Genes annotated by the GO term GO:0003743. Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.	www.broad.mit.e...
Broad HELICASE_ACTIVITY	View Gene Set	1.441e-06	49	9.508e-05	6	Genes annotated by the GO term GO:0004386. Catalysis of the unwinding of a DNA or RNA duplex.	www.broad.mit.e...
Broad ATP_DEPENDENT_HELICASE_ACTIVITY	View Gene Set	2.533e-06	26	0.0001433	7	Genes annotated by the GO term GO:0008026. Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix.	www.broad.mit.e...
Broad RNA_HELICASE_ACTIVITY	View Gene Set	1.329e-05	24	0.0006581	8	Genes annotated by the GO term GO:0003724. Catalysis of the unwinding of an RNA helix.	www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM	View Gene Set	1.653e-05	14	0.0007273	9	Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced.	www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING	View Gene Set	1.899e-05	34	0.0007518	10	Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA.	www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING	View Gene Set	2.115e-05	55	0.0007615	11	Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding.	www.broad.mit.e...
Broad RNA_DEPENDENT_ATPASE_ACTIVITY	View Gene Set	2.678e-05	18	0.0008838	12	Genes annotated by the GO term GO:0008186. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of RNA; drives another reaction.	www.broad.mit.e...
Broad STRUCTURAL_CONSTITUENT_OF_RIBOSOME	View Gene Set	3.379e-05	80	0.001029	13	Genes annotated by the GO term GO:0003735. The action of a molecule that contributes to the structural integrity of the ribosome.	www.broad.mit.e...
Broad DNA_DEPENDENT_ATPASE_ACTIVITY	View Gene Set	4.223e-05	22	0.001195	14	Genes annotated by the GO term GO:0008094. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of single- or double-stranded DNA; drives another reaction.	www.broad.mit.e...
Broad ATP_DEPENDENT_RNA_HELICASE_ACTIVITY	View Gene Set	4.536e-05	17	0.001197	15	Genes annotated by the GO term GO:0004004. Catalysis of the reaction: ATP + H2O = ADP + phosphate driving the unwinding of an RNA helix.	www.broad.mit.e...
Broad DNA_HELICASE_ACTIVITY	View Gene Set	8.783e-05	24	0.002174	16	Genes annotated by the GO term GO:0003678. Catalysis of the unwinding of a DNA duplex.	www.broad.mit.e...
Broad CHROMATIN_BINDING	View Gene Set	0.0001195	32	0.002783	17	Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase.	www.broad.mit.e...
Broad UNFOLDED_PROTEIN_BINDING	View Gene Set	0.0001659	41	0.00365	18	Genes annotated by the GO term GO:0051082. Interacting selectively with an unfolded protein.	www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING	View Gene Set	0.0001755	32	0.003657	19	Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA.	www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_OXYGEN_BONDS	View Gene Set	0.0002812	14	0.005568	20	Genes annotated by the GO term GO:0016875. Catalysis of the ligation of two substances via a carbon-oxygen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate.	www.broad.mit.e...
Broad MRNA_BINDING	View Gene Set	0.0005359	22	0.01011	21	Genes annotated by the GO term GO:0003729. Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA).	www.broad.mit.e...
Broad RIBONUCLEASE_ACTIVITY	View Gene Set	0.0006511	25	0.01172	22	Genes annotated by the GO term GO:0004540. Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.	www.broad.mit.e...
Broad ATP_DEPENDENT_DNA_HELICASE_ACTIVITY	View Gene Set	0.001218	11	0.02097	23	Genes annotated by the GO term GO:0004003. Catalysis of the reaction: ATP + H2O = ADP + phosphate driving the unwinding of the DNA helix.	www.broad.mit.e...
Broad TRANSCRIPTION_ACTIVATOR_ACTIVITY	View Gene Set	0.001726	169	0.02847	24	Genes annotated by the GO term GO:0016563. Any transcription regulator activity required for initiation or upregulation of transcription.	www.broad.mit.e...
Broad ENDONUCLEASE_ACTIVITY_GO_0016893	View Gene Set	0.001857	11	0.02941	25	Genes annotated by the GO term GO:0016893. Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks to yield 5'-phosphomonoesters.	www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS	View Gene Set	0.00238	68	0.0325	26	Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_ACTIVITY	View Gene Set	0.00236	340	0.0325	26	Genes annotated by the GO term GO:0003700. The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING	View Gene Set	0.00217	300	0.0325	26	Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription.	www.broad.mit.e...
Broad HORMONE_RECEPTOR_BINDING	View Gene Set	0.002267	29	0.0325	26	Genes annotated by the GO term GO:0051427. Interacting selectively with a receptor for hormones.	www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY	View Gene Set	0.003178	222	0.04195	30	Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself.	www.broad.mit.e...
Broad ENDORIBONUCLEASE_ACTIVITY	View Gene Set	0.00346	13	0.0442	31	Genes annotated by the GO term GO:0004521. Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.	www.broad.mit.e...
Broad NUCLEASE_ACTIVITY	View Gene Set	0.003679	54	0.04553	32	Genes annotated by the GO term GO:0004518. Catalysis of the hydrolysis of ester linkages within nucleic acids.	www.broad.mit.e...
Broad RNA_POLYMERASE_II_TRANSCRIPTION_MEDIATOR_ACTIVITY	View Gene Set	0.003852	13	0.04623	33	Genes annotated by the GO term GO:0016455. Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
PMID 15635413	View Gene Set	1.507e-56	421	3.777e-53	1	Nucleolar proteome dynamics.	www.ncbi.nlm.ni...
PMID 12429849	View Gene Set	1.434e-35	106	1.798e-32	2	Functional proteomic analysis of human nucleolus.	www.ncbi.nlm.ni...
PMID 15302935	View Gene Set	5.583e-35	773	4.666e-32	3	Large-scale characterization of HeLa cell nuclear phosphoproteins.	www.ncbi.nlm.ni...
PMID 17643375	View Gene Set	4.034e-33	391	2.528e-30	4	Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.	www.ncbi.nlm.ni...
PMID 16565220	View Gene Set	2.346e-32	210	1.176e-29	5	Phosphoproteome analysis of the human mitotic spindle.	www.ncbi.nlm.ni...
PMID 11790298	View Gene Set	5.828e-32	208	2.435e-29	6	Directed proteomic analysis of the human nucleolus.	www.ncbi.nlm.ni...
PMID 16964243	View Gene Set	2.717e-29	504	9.732e-27	7	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	www.ncbi.nlm.ni...
PMID 12226669	View Gene Set	7.682e-23	108	2.407e-20	8	Comprehensive proteomic analysis of the human spliceosome.	www.ncbi.nlm.ni...
PMID 11991638	View Gene Set	3.011e-16	74	8.387e-14	9	Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.	www.ncbi.nlm.ni...
PMID 15592455	View Gene Set	4.928e-16	317	1.235e-13	10	Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.	www.ncbi.nlm.ni...
PMID 14559993	View Gene Set	1.299e-14	51	2.96e-12	11	Regulation of alternative splicing by SRrp86 and its interacting proteins.	www.ncbi.nlm.ni...
PMID 20085707	View Gene Set	1.649e-11	42	3.445e-09	12	Aire's partners in the molecular control of immunological tolerance.	www.ncbi.nlm.ni...
PMID 16916647	View Gene Set	3.463e-11	76	6.677e-09	13	Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.	www.ncbi.nlm.ni...
PMID 15231747	View Gene Set	5.902e-11	212	1.057e-08	14	A protein interaction framework for human mRNA degradation.	www.ncbi.nlm.ni...
PMID 12706105	View Gene Set	3.255e-10	182	5.44e-08	15	Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome.	www.ncbi.nlm.ni...
PMID 11285280	View Gene Set	6.356e-10	62	9.959e-08	16	Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint.	www.ncbi.nlm.ni...
PMID 12171929	View Gene Set	1.54e-09	31	2.16e-07	17	A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein.	www.ncbi.nlm.ni...
PMID 20508983	View Gene Set	1.551e-09	102	2.16e-07	17	Centrosome-related genes genetic variation and risk of breast cancer.	www.ncbi.nlm.ni...
PMID 15782174	View Gene Set	2.302e-09	31	3.038e-07	19	Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.	www.ncbi.nlm.ni...
PMID 12791267	View Gene Set	5.705e-09	50	7.152e-07	20	Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase.	www.ncbi.nlm.ni...
PMID 18162579	View Gene Set	6.148e-09	22	7.339e-07	21	Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1.	www.ncbi.nlm.ni...
PMID 15009096	View Gene Set	1.781e-08	39	2.029e-06	22	Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase.	www.ncbi.nlm.ni...
PMID 14743216	View Gene Set	2.511e-08	132	2.737e-06	23	A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway.	www.ncbi.nlm.ni...
PMID 16319397	View Gene Set	2.769e-08	20	2.893e-06	24	Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry.	www.ncbi.nlm.ni...
PMID 10893419	View Gene Set	3.795e-08	41	3.113e-06	25	Degradation of HIV-1 integrase by the N-end rule pathway.	www.ncbi.nlm.ni...
PMID 12419264	View Gene Set	3.795e-08	41	3.113e-06	25	The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing.	www.ncbi.nlm.ni...
PMID 12791985	View Gene Set	3.925e-08	37	3.113e-06	25	Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes.	www.ncbi.nlm.ni...
PMID 12859895	View Gene Set	3.973e-08	47	3.113e-06	25	Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif.	www.ncbi.nlm.ni...
PMID 14550573	View Gene Set	3.795e-08	41	3.113e-06	25	Human immunodeficiency virus-1 Tat protein interacts with distinct proteasomal alpha and beta subunits.	www.ncbi.nlm.ni...
PMID 17289661	View Gene Set	3.903e-08	35	3.113e-06	25	Molecular composition of IMP1 ribonucleoprotein granules.	www.ncbi.nlm.ni...
PMID 9079628	View Gene Set	3.795e-08	41	3.113e-06	25	HIV-1 tat inhibits the 20 S proteasome and its 11 S regulator-mediated activation.	www.ncbi.nlm.ni...
PMID 9731529	View Gene Set	3.95e-08	24	3.113e-06	25	Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.	www.ncbi.nlm.ni...
PMID 15029244	View Gene Set	4.941e-08	57	3.754e-06	33	Mammalian Cdh1/Fzr mediates its own degradation.	www.ncbi.nlm.ni...
PMID 15146077	View Gene Set	7.019e-08	32	5.175e-06	34	The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome.	www.ncbi.nlm.ni...
PMID 8811196	View Gene Set	8.049e-08	37	5.766e-06	35	Structure and functions of the 20S and 26S proteasomes.	www.ncbi.nlm.ni...
PMID 12719574	View Gene Set	1.099e-07	42	6.26e-06	36	Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions.	www.ncbi.nlm.ni...
PMID 12750511	View Gene Set	1.099e-07	42	6.26e-06	36	Hypermutation of HIV-1 DNA in the absence of the Vif protein.	www.ncbi.nlm.ni...
PMID 12830140	View Gene Set	1.099e-07	42	6.26e-06	36	DNA deamination: not just a trigger for antibody diversification but also a mechanism for defense against retroviruses.	www.ncbi.nlm.ni...
PMID 12840737	View Gene Set	1.099e-07	42	6.26e-06	36	Good to CU.	www.ncbi.nlm.ni...
PMID 12914693	View Gene Set	1.099e-07	42	6.26e-06	36	Death by deamination: a novel host restriction system for HIV-1.	www.ncbi.nlm.ni...
PMID 12920286	View Gene Set	1.099e-07	42	6.26e-06	36	Virology. Weapons of mutational destruction.	www.ncbi.nlm.ni...
PMID 14614829	View Gene Set	1.099e-07	42	6.26e-06	36	The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G.	www.ncbi.nlm.ni...
PMID 9811770	View Gene Set	1.099e-07	42	6.26e-06	36	An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein.	www.ncbi.nlm.ni...
PMID 9846577	View Gene Set	1.099e-07	42	6.26e-06	36	Evidence for a newly discovered cellular anti-HIV-1 phenotype.	www.ncbi.nlm.ni...
PMID 12045100	View Gene Set	1.504e-07	18	8.376e-06	45	DNA replication in eukaryotic cells.	www.ncbi.nlm.ni...
PMID 12167863	View Gene Set	2.085e-07	43	9.503e-06	46	Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein.	www.ncbi.nlm.ni...
PMID 12588972	View Gene Set	1.837e-07	56	9.503e-06	46	Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region.	www.ncbi.nlm.ni...
PMID 12808465	View Gene Set	2.085e-07	43	9.503e-06	46	The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA.	www.ncbi.nlm.ni...
PMID 12808466	View Gene Set	2.085e-07	43	9.503e-06	46	Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts.	www.ncbi.nlm.ni...
PMID 12809610	View Gene Set	2.085e-07	43	9.503e-06	46	DNA deamination mediates innate immunity to retroviral infection.	www.ncbi.nlm.ni...
PMID 12970355	View Gene Set	2.085e-07	43	9.503e-06	46	The enzymatic activity of CEM15/Apobec-3G is essential for the regulation of the infectivity of HIV-1 virion but not a sole determinant of its antiviral activity.	www.ncbi.nlm.ni...
PMID 14527406	View Gene Set	2.085e-07	43	9.503e-06	46	HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability.	www.ncbi.nlm.ni...
PMID 14528300	View Gene Set	2.085e-07	43	9.503e-06	46	The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif.	www.ncbi.nlm.ni...
PMID 14528301	View Gene Set	2.085e-07	43	9.503e-06	46	HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation.	www.ncbi.nlm.ni...
PMID 14557625	View Gene Set	2.085e-07	43	9.503e-06	46	The human immunodeficiency virus type 1 Vif protein reduces intracellular expression and inhibits packaging of APOBEC3G (CEM15) a cellular inhibitor of virus infectivity.	www.ncbi.nlm.ni...
PMID 11095689	View Gene Set	2.68e-07	17	1.2e-05	56	The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase.	www.ncbi.nlm.ni...
PMID 16713563	View Gene Set	4.105e-07	19	1.805e-05	57	Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.	www.ncbi.nlm.ni...
PMID 11543634	View Gene Set	4.22e-07	58	1.824e-05	58	The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders.	www.ncbi.nlm.ni...
PMID 14564014	View Gene Set	5.03e-07	47	2.137e-05	59	Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex.	www.ncbi.nlm.ni...
PMID 17363900	View Gene Set	5.126e-07	14	2.142e-05	60	The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions.	www.ncbi.nlm.ni...
PMID 12234937	View Gene Set	5.791e-07	34	2.38e-05	61	Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein.	www.ncbi.nlm.ni...
PMID 14657027	View Gene Set	6.589e-07	74	2.664e-05	62	Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter.	www.ncbi.nlm.ni...
PMID 19710015	View Gene Set	8.739e-07	48	3.478e-05	63	The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor.	www.ncbi.nlm.ni...
PMID 19237606	View Gene Set	9.629e-07	84	3.772e-05	64	Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk.	www.ncbi.nlm.ni...
PMID 16283522	View Gene Set	9.886e-07	18	3.813e-05	65	Inhibition of core histones acetylation by carcinogenic nickel(II).	www.ncbi.nlm.ni...
PMID 16627869	View Gene Set	2.243e-06	17	8.522e-05	66	Quantitative proteomic analysis of post-translational modifications of human histones.	www.ncbi.nlm.ni...
PMID 16236267	View Gene Set	2.383e-06	77	8.919e-05	67	Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress.	www.ncbi.nlm.ni...
PMID 15707391	View Gene Set	2.888e-06	23	0.0001065	68	DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system.	www.ncbi.nlm.ni...
PMID 11101529	View Gene Set	3.167e-06	34	0.0001151	69	Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry.	www.ncbi.nlm.ni...
PMID 15324660	View Gene Set	3.456e-06	242	0.0001238	70	Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization.	www.ncbi.nlm.ni...
PMID 10436018	View Gene Set	3.557e-06	15	0.0001256	71	The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells.	www.ncbi.nlm.ni...
PMID 15226314	View Gene Set	3.679e-06	20	0.0001281	72	Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures.	www.ncbi.nlm.ni...
PMID 12930902	View Gene Set	3.852e-06	11	0.0001305	73	The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA.	www.ncbi.nlm.ni...
PMID 14983052	View Gene Set	3.825e-06	391	0.0001305	73	The human olfactory receptor gene family.	www.ncbi.nlm.ni...
PMID 9566873	View Gene Set	4.076e-06	74	0.0001362	75	Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter.	www.ncbi.nlm.ni...
PMID 20496165	View Gene Set	4.625e-06	68	0.0001526	76	Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk.	www.ncbi.nlm.ni...
PMID 16307923	View Gene Set	4.714e-06	23	0.0001535	77	Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.	www.ncbi.nlm.ni...
PMID 18270339	View Gene Set	6.261e-06	57	0.0002012	78	Comprehensive analysis of DNA repair gene variants and risk of meningioma.	www.ncbi.nlm.ni...
PMID 15130578	View Gene Set	6.796e-06	22	0.0002157	79	Why do cells need an assembly machine for RNA-protein complexes?	www.ncbi.nlm.ni...
PMID 11080476	View Gene Set	8.185e-06	87	0.0002565	80	Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones.	www.ncbi.nlm.ni...
PMID 17148452	View Gene Set	8.897e-06	87	0.0002754	81	Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2.	www.ncbi.nlm.ni...
PMID 12757711	View Gene Set	9.329e-06	18	0.0002852	82	Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase.	www.ncbi.nlm.ni...
PMID 11689053	View Gene Set	1.013e-05	70	0.000306	83	Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA.	www.ncbi.nlm.ni...
PMID 11279123	View Gene Set	1.445e-05	31	0.0004304	84	The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present.	www.ncbi.nlm.ni...
PMID 15189156	View Gene Set	1.459e-05	88	0.0004304	84	The molecular mechanics of eukaryotic translation.	www.ncbi.nlm.ni...
PMID 12614612	View Gene Set	1.482e-05	19	0.000432	86	Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells.	www.ncbi.nlm.ni...
PMID 14532270	View Gene Set	1.536e-05	12	0.0004404	87	A product of the human gene adjacent to parkin is a component of Lewy bodies and suppresses Pael receptor-induced cell death.	www.ncbi.nlm.ni...
PMID 18809582	View Gene Set	1.546e-05	25	0.0004404	87	Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome.	www.ncbi.nlm.ni...
PMID 15504738	View Gene Set	1.705e-05	19	0.0004804	89	Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling.	www.ncbi.nlm.ni...
PMID 18715871	View Gene Set	1.844e-05	20	0.0005138	90	PP4R4/KIAA1622 forms a novel stable cytosolic complex with phosphoprotein phosphatase 4.	www.ncbi.nlm.ni...
PMID 16085932	View Gene Set	1.926e-05	18	0.0005307	91	A novel evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity.	www.ncbi.nlm.ni...
PMID 15232106	View Gene Set	2.082e-05	30	0.0005673	92	Self-assembling protein microarrays.	www.ncbi.nlm.ni...
PMID 11829477	View Gene Set	2.359e-05	13	0.000636	93	Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex.	www.ncbi.nlm.ni...
PMID 9582194	View Gene Set	2.524e-05	67	0.0006732	94	A map of 75 human ribosomal protein genes.	www.ncbi.nlm.ni...
PMID 17220478	View Gene Set	2.829e-05	63	0.0007465	95	Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells.	www.ncbi.nlm.ni...
PMID 11719186	View Gene Set	3.103e-05	17	0.0008021	96	AU binding proteins recruit the exosome to degrade ARE-containing mRNAs.	www.ncbi.nlm.ni...
PMID 15456888	View Gene Set	3.098e-05	24	0.0008021	96	The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo.	www.ncbi.nlm.ni...
PMID 11310559	View Gene Set	3.19e-05	17	0.0008161	98	Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha.	www.ncbi.nlm.ni...
PMID 12388589	View Gene Set	3.544e-05	17	0.00089	99	A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons.	www.ncbi.nlm.ni...
PMID 16622419	View Gene Set	3.55e-05	16	0.00089	99	The human CENP-A centromeric nucleosome-associated complex.	www.ncbi.nlm.ni...
PMID 16622420	View Gene Set	3.645e-05	14	0.0009047	101	The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres.	www.ncbi.nlm.ni...
PMID 14667819	View Gene Set	3.705e-05	112	0.0009106	102	Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region.	www.ncbi.nlm.ni...
PMID 18063578	View Gene Set	4.292e-05	31	0.001045	103	The layered structure of human mitochondrial DNA nucleoids.	www.ncbi.nlm.ni...
PMID 20522537	View Gene Set	4.458e-05	73	0.001075	104	Variation within DNA repair pathway genes and risk of multiple sclerosis.	www.ncbi.nlm.ni...
PMID 12228227	View Gene Set	5.831e-05	30	0.001392	105	Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1.	www.ncbi.nlm.ni...
PMID 12962325	View Gene Set	5.962e-05	22	0.00141	106	Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing.	www.ncbi.nlm.ni...
PMID 11714285	View Gene Set	7.642e-05	11	0.001696	107	The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function.	www.ncbi.nlm.ni...
PMID 16055448	View Gene Set	7.642e-05	11	0.001696	107	The C-terminal appended domain of human cytosolic leucyl-tRNA synthetase is indispensable in its interaction with arginyl-tRNA synthetase in the multi-tRNA synthetase complex.	www.ncbi.nlm.ni...
PMID 8052601	View Gene Set	7.642e-05	11	0.001696	107	Human cytoplasmic isoleucyl-tRNA synthetase: selective divergence of the anticodon-binding domain and acquisition of a new structural unit.	www.ncbi.nlm.ni...
PMID 8078941	View Gene Set	7.642e-05	11	0.001696	107	Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer.	www.ncbi.nlm.ni...
PMID 8188258	View Gene Set	7.642e-05	11	0.001696	107	The human EPRS locus (formerly the QARS locus): a gene encoding a class I and a class II aminoacyl-tRNA synthetase.	www.ncbi.nlm.ni...
PMID 8449960	View Gene Set	7.642e-05	11	0.001696	107	Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix.	www.ncbi.nlm.ni...
PMID 9278442	View Gene Set	7.642e-05	11	0.001696	107	Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant.	www.ncbi.nlm.ni...
PMID 20226869	View Gene Set	8.462e-05	25	0.001861	114	Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations.	www.ncbi.nlm.ni...
PMID 18997788	View Gene Set	8.844e-05	10	0.001928	115	The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction.	www.ncbi.nlm.ni...
PMID 12408966	View Gene Set	9.703e-05	76	0.002097	116	The human and mouse replication-dependent histone genes.	www.ncbi.nlm.ni...
PMID 14966270	View Gene Set	9.906e-05	19	0.002123	117	Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans.	www.ncbi.nlm.ni...
PMID 10766737	View Gene Set	0.0001011	11	0.00214	118	Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression.	www.ncbi.nlm.ni...
PMID 19596235	View Gene Set	0.0001016	85	0.00214	118	Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair.	www.ncbi.nlm.ni...
PMID 18954305	View Gene Set	0.0001102	13	0.002301	120	Structural basis and specificity of human otubain 1-mediated deubiquitination.	www.ncbi.nlm.ni...
PMID 11931757	View Gene Set	0.0001296	22	0.002641	121	Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication.	www.ncbi.nlm.ni...
PMID 7494303	View Gene Set	0.0001289	12	0.002641	121	Mutational analysis of cell cycle arrest nuclear localization and virion packaging of human immunodeficiency virus type 1 Vpr.	www.ncbi.nlm.ni...
PMID 9822659	View Gene Set	0.0001289	11	0.002641	121	Characterization of cDNAs encoding the p44 and p35 subunits of human translation initiation factor eIF3.	www.ncbi.nlm.ni...
PMID 19468067	View Gene Set	0.0001405	10	0.002841	124	Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly.	www.ncbi.nlm.ni...
PMID 9562972	View Gene Set	0.0001465	11	0.002939	125	HIV-1 nuclear import: matrix protein is back on center stage this time together with Vpr.	www.ncbi.nlm.ni...
PMID 11205743	View Gene Set	0.0001496	15	0.002963	126	Polo-like kinase interacts with proteasomes and regulates their activity.	www.ncbi.nlm.ni...
PMID 9878398	View Gene Set	0.0001501	13	0.002963	126	Macromolecular assemblage of aminoacyl-tRNA synthetases: identification of protein-protein interactions and characterization of a core protein.	www.ncbi.nlm.ni...
PMID 11416179	View Gene Set	0.0001788	12	0.003502	128	All kinesin superfamily protein KIF genes in mouse and human.	www.ncbi.nlm.ni...
PMID 11125146	View Gene Set	0.0001847	10	0.003589	129	Inhibition of eukaryotic DNA replication by geminin binding to Cdt1.	www.ncbi.nlm.ni...
PMID 19584272	View Gene Set	0.0001902	11	0.003667	130	Modification of ovarian cancer risk by BRCA1/2-interacting genes in a multicenter cohort of BRCA1/2 mutation carriers.	www.ncbi.nlm.ni...
PMID 11124703	View Gene Set	0.0001942	18	0.003677	131	Characterization of 16 novel human genes showing high similarity to yeast sequences.	www.ncbi.nlm.ni...
PMID 8995409	View Gene Set	0.0001951	11	0.003677	131	Conservation and diversity of eukaryotic translation initiation factor eIF3.	www.ncbi.nlm.ni...
PMID 8995410	View Gene Set	0.0001951	10	0.003677	131	The human homologue of the yeast Prt1 protein is an integral part of the eukaryotic initiation factor 3 complex and interacts with p170.	www.ncbi.nlm.ni...
PMID 16716197	View Gene Set	0.0001994	10	0.00373	134	Comprehensive analysis of the ICEN (Interphase Centromere Complex) components enriched in the CENP-A chromatin of human cells.	www.ncbi.nlm.ni...
PMID 8722009	View Gene Set	0.000207	80	0.003843	135	Structure and evolution of mammalian ribosomal proteins.	www.ncbi.nlm.ni...
PMID 11714716	View Gene Set	0.0002198	13	0.004051	136	Gemin5 a novel WD repeat protein component of the SMN complex that binds Sm proteins.	www.ncbi.nlm.ni...
PMID 15461802	View Gene Set	0.000223	293	0.004082	137	A genome annotation-driven approach to cloning the human ORFeome.	www.ncbi.nlm.ni...
PMID 15960975	View Gene Set	0.0002316	28	0.004207	138	Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF.	www.ncbi.nlm.ni...
PMID 10983978	View Gene Set	0.0002458	10	0.004433	139	Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1.	www.ncbi.nlm.ni...
PMID 8590280	View Gene Set	0.0002541	41	0.004551	140	Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1.	www.ncbi.nlm.ni...
PMID 11812149	View Gene Set	0.0002639	13	0.004693	141	Protein-protein interactions of hCsl4p with other human exosome subunits.	www.ncbi.nlm.ni...
PMID 15502821	View Gene Set	0.0002718	12	0.004798	142	A conserved Mis12 centromere complex is linked to heterochromatic HP1 and outer kinetochore protein Zwint-1.	www.ncbi.nlm.ni...
PMID 10601273	View Gene Set	0.0002894	21	0.005073	143	Nuclear import of hepatic glucokinase depends upon glucokinase regulatory protein whereas export is due to a nuclear export signal sequence in glucokinase.	www.ncbi.nlm.ni...
PMID 14519125	View Gene Set	0.0002926	12	0.005094	144	Characterization of eIF3k: a newly discovered subunit of mammalian translation initiation factor elF3.	www.ncbi.nlm.ni...
PMID 11799066	View Gene Set	0.0003105	21	0.005356	145	Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis.	www.ncbi.nlm.ni...
PMID 15078818	View Gene Set	0.000314	11	0.005356	145	Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo.	www.ncbi.nlm.ni...
PMID 16702407	View Gene Set	0.000314	11	0.005356	145	DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A.	www.ncbi.nlm.ni...
PMID 10531003	View Gene Set	0.0003528	15	0.005896	148	Newly assembled snRNPs associate with coiled bodies before speckles suggesting a nuclear snRNP maturation pathway.	www.ncbi.nlm.ni...
PMID 17322308	View Gene Set	0.0003514	13	0.005896	148	Structural characterization of the human eukaryotic initiation factor 3 protein complex by mass spectrometry.	www.ncbi.nlm.ni...
PMID 18599441	View Gene Set	0.0003514	13	0.005896	148	Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3.	www.ncbi.nlm.ni...
PMID 10608806	View Gene Set	0.0003557	25	0.005906	151	Substrate specificities and identification of putative substrates of ATM kinase family members.	www.ncbi.nlm.ni...
PMID 10851237	View Gene Set	0.0003909	11	0.006447	152	Specific sequences of the Sm and Sm-like (Lsm) proteins mediate their interaction with the spinal muscular atrophy disease gene product (SMN).	www.ncbi.nlm.ni...
PMID 9111189	View Gene Set	0.0003954	16	0.006479	153	Which DNA polymerases are used for DNA-repair in eukaryotes?	www.ncbi.nlm.ni...
PMID 11799067	View Gene Set	0.0004167	10	0.006739	154	E2F integrates cell cycle progression with DNA repair replication and G(2)/M checkpoints.	www.ncbi.nlm.ni...
PMID 9472028	View Gene Set	0.000416	12	0.006739	154	SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.	www.ncbi.nlm.ni...
PMID 16094384	View Gene Set	0.0004236	80	0.006807	156	Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry.	www.ncbi.nlm.ni...
PMID 11076961	View Gene Set	0.0004302	14	0.006869	157	Characterization of vertebrate cohesin complexes and their regulation in prophase.	www.ncbi.nlm.ni...
PMID 11914277	View Gene Set	0.0004562	38	0.007239	158	miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.	www.ncbi.nlm.ni...
PMID 16387653	View Gene Set	0.0005245	42	0.008271	159	ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.	www.ncbi.nlm.ni...
PMID 9439656	View Gene Set	0.0006036	55	0.009458	160	The human histone gene cluster at the D6S105 locus.	www.ncbi.nlm.ni...
PMID 15010469	View Gene Set	0.0006509	15	0.01007	161	Phosphorylation of histone H2A inhibits transcription on chromatin templates.	www.ncbi.nlm.ni...
PMID 15196461	View Gene Set	0.0006502	11	0.01007	161	The highly conserved and multifunctional NuA4 HAT complex.	www.ncbi.nlm.ni...
PMID 10064132	View Gene Set	0.0006793	14	0.01038	163	The human H2A and H2B histone gene complement.	www.ncbi.nlm.ni...
PMID 14733938	View Gene Set	0.000677	13	0.01038	163	Protein-protein interactions among human 20S proteasome subunits and proteassemblin.	www.ncbi.nlm.ni...
PMID 10601333	View Gene Set	0.0007092	12	0.01078	165	Gemin3: A novel DEAD box protein that interacts with SMN the spinal muscular atrophy gene product and is a component of gems.	www.ncbi.nlm.ni...
PMID 12732143	View Gene Set	0.000721	14	0.01089	166	The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage.	www.ncbi.nlm.ni...
PMID 1574589	View Gene Set	0.0007446	11	0.01118	167	De novo purine nucleotide biosynthesis.	www.ncbi.nlm.ni...
PMID 12221128	View Gene Set	0.0007963	70	0.01188	168	Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex.	www.ncbi.nlm.ni...
PMID 11110791	View Gene Set	0.000812	12	0.01205	169	Three novel components of the human exosome.	www.ncbi.nlm.ni...
PMID 14615539	View Gene Set	0.0008334	11	0.01229	170	Control of nutrient-sensitive transcription programs by the unconventional prefoldin URI.	www.ncbi.nlm.ni...
PMID 18377426	View Gene Set	0.0008446	20	0.01238	171	Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex.	www.ncbi.nlm.ni...
PMID 14499622	View Gene Set	0.0008684	53	0.01266	172	Yeast two-hybrid screens imply involvement of Fanconi anemia proteins in transcription regulation cell signaling oxidative metabolism and cellular transport.	www.ncbi.nlm.ni...
PMID 11500380	View Gene Set	0.0008808	10	0.01276	173	A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.	www.ncbi.nlm.ni...
PMID 12963728	View Gene Set	0.0009036	21	0.01302	174	Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex.	www.ncbi.nlm.ni...
PMID 12419256	View Gene Set	0.0009471	12	0.01357	175	Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring.	www.ncbi.nlm.ni...
PMID 15647280	View Gene Set	0.00096	17	0.01361	176	The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes.	www.ncbi.nlm.ni...
PMID 17525332	View Gene Set	0.0009665	22	0.01361	176	ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.	www.ncbi.nlm.ni...
PMID 17581632	View Gene Set	0.0009719	11	0.01361	176	Reconstitution reveals the functional core of mammalian eIF3.	www.ncbi.nlm.ni...
PMID 19138993	View Gene Set	0.0009652	25	0.01361	176	Genetic variations in microRNA-related genes are novel susceptibility loci for esophageal cancer risk.	www.ncbi.nlm.ni...
PMID 16359901	View Gene Set	0.001052	14	0.01465	180	Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing.	www.ncbi.nlm.ni...
PMID 9119399	View Gene Set	0.001065	35	0.01475	181	Human histone gene organization: nonregular arrangement within a large cluster.	www.ncbi.nlm.ni...
PMID 10725331	View Gene Set	0.001108	14	0.01527	182	Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli.	www.ncbi.nlm.ni...
PMID 7811265	View Gene Set	0.00113	16	0.01549	183	Human proteasome subunits from 2-dimensional gels identified by partial sequencing.	www.ncbi.nlm.ni...
PMID 11060040	View Gene Set	0.001283	15	0.01749	184	Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors.	www.ncbi.nlm.ni...
PMID 11551941	View Gene Set	0.001296	26	0.01752	185	The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present.	www.ncbi.nlm.ni...
PMID 7584028	View Gene Set	0.0013	37	0.01752	185	Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1 (supplement).	www.ncbi.nlm.ni...
PMID 12837248	View Gene Set	0.001345	22	0.01803	187	The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome.	www.ncbi.nlm.ni...
PMID 11531413	View Gene Set	0.001406	27	0.01866	188	HIV-1 Vpr induces cell cycle G2 arrest in fission yeast (Schizosaccharomyces pombe) through a pathway involving regulatory and catalytic subunits of PP2A and acting on both Wee1 and Cdc25.	www.ncbi.nlm.ni...
PMID 11713266	View Gene Set	0.001404	12	0.01866	188	The methylosome a 20S complex containing JBP1 and pICln produces dimethylarginine-modified Sm proteins.	www.ncbi.nlm.ni...
PMID 10783165	View Gene Set	0.001552	12	0.02046	190	BASC a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures.	www.ncbi.nlm.ni...
PMID 11073998	View Gene Set	0.001559	15	0.02046	190	TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture.	www.ncbi.nlm.ni...
PMID 19270065	View Gene Set	0.001622	11	0.02118	192	MRE11 complex links RECQ5 helicase to sites of DNA damage.	www.ncbi.nlm.ni...
PMID 19690177	View Gene Set	0.001631	31	0.02118	193	Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk.	www.ncbi.nlm.ni...
PMID 18082152	View Gene Set	0.001735	11	0.02242	194	Human CpG binding protein interacts with MLL1 MLL2 and hSet1 and regulates Hox gene expression.	www.ncbi.nlm.ni...
PMID 7584026	View Gene Set	0.00189	43	0.0243	195	Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1.	www.ncbi.nlm.ni...
PMID 17388661	View Gene Set	0.001981	24	0.02534	196	Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen.	www.ncbi.nlm.ni...
PMID 1403646	View Gene Set	0.002067	17	0.0262	197	The human immunodeficiency virus tat protein increases the transcription of human Alu repeated sequences by increasing the activity of the cellular transcription factor TFIIIC.	www.ncbi.nlm.ni...
PMID 16109376	View Gene Set	0.002069	17	0.0262	197	The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.	www.ncbi.nlm.ni...
PMID 15823041	View Gene Set	0.002106	13	0.02654	199	Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes.	www.ncbi.nlm.ni...
PMID 12213199	View Gene Set	0.002141	216	0.02684	200	DEFOG: a practical scheme for deciphering families of genes.	www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null chr17_77.5-82.5Mb	View Gene Set	1.562e-05	54	0.0087	1	Genomic tile: chr17 ; 77500001-82500001 Mb	genome.ucsc.edu...
Null chr17_80-85Mb	View Gene Set	8.336e-06	37	0.0087	1	Genomic tile: chr17 ; 80000001-85000001 Mb	genome.ucsc.edu...
Null chr11_60-65Mb	View Gene Set	6.894e-05	104	0.0192	3	Genomic tile: chr11 ; 60000001-65000001 Mb	genome.ucsc.edu...
Null chr16_67.5-72.5Mb	View Gene Set	6.117e-05	51	0.0192	3	Genomic tile: chr16 ; 67500001-72500001 Mb	genome.ucsc.edu...
Null chr11_57.5-62.5Mb	View Gene Set	0.0001422	71	0.03169	5	Genomic tile: chr11 ; 57500001-62500001 Mb	genome.ucsc.edu...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null PS50102	View Gene Set	1.697e-23	229	1.247e-20	1	RRM	expasy.org/pros...
Null PS51195	View Gene Set	3.565e-09	37	1.31e-06	2	Q_MOTIF	expasy.org/pros...
Null PS51194	View Gene Set	2.745e-08	113	6.726e-06	3	HELICASE_CTER	expasy.org/pros...
Null PS00357	View Gene Set	6.413e-08	19	1.178e-05	4	HISTONE_H2B	expasy.org/pros...
Null PS51192	View Gene Set	1.128e-07	112	1.658e-05	5	HELICASE_ATP_BIND_1	expasy.org/pros...
Null PS00039	View Gene Set	7.735e-07	27	9.476e-05	6	DEAD_ATP_HELICASE	expasy.org/pros...
Null PS00750	View Gene Set	2.889e-06	9	0.000236	7	TCP1_1	expasy.org/pros...
Null PS00751	View Gene Set	2.889e-06	9	0.000236	7	TCP1_2	expasy.org/pros...
Null PS00995	View Gene Set	2.889e-06	9	0.000236	7	TCP1_3	expasy.org/pros...
Null PS50262	View Gene Set	3.29e-05	765	0.002418	10	G_PROTEIN_RECEP_F1_2	expasy.org/pros...
Null PS50174	View Gene Set	8.04e-05	25	0.004924	11	G_PATCH	expasy.org/pros...
Null PS50280	View Gene Set	7.44e-05	47	0.004924	11	SET	expasy.org/pros...
Null PS51214	View Gene Set	0.0001276	10	0.007217	13	IBB	expasy.org/pros...
Null PS00674	View Gene Set	0.0001961	29	0.01029	14	AAA	expasy.org/pros...
Null PS50082	View Gene Set	0.0002644	233	0.01295	15	WD_REPEATS_2	expasy.org/pros...
Null PS50051	View Gene Set	0.0003228	8	0.01456	16	MCM_2	expasy.org/pros...
Null PS50294	View Gene Set	0.0003482	245	0.01456	16	WD_REPEATS_REGION	expasy.org/pros...
Null PS50862	View Gene Set	0.0003566	18	0.01456	16	AA_TRNA_LIGASE_II	expasy.org/pros...
Null PS00237	View Gene Set	0.0005068	555	0.01961	19	G_PROTEIN_RECEP_F1_1	expasy.org/pros...
Null PS00046	View Gene Set	0.0006327	21	0.02111	20	HISTONE_H2A	expasy.org/pros...
Null PS00178	View Gene Set	0.0006605	15	0.02111	20	AA_TRNA_LIGASE_I	expasy.org/pros...
Null PS00854	View Gene Set	0.000621	12	0.02111	20	PROTEASOME_B_1	expasy.org/pros...
Null PS50157	View Gene Set	0.0006331	811	0.02111	20	ZINC_FINGER_C2H2_2	expasy.org/pros...
Null PS00028	View Gene Set	0.0009934	830	0.03042	24	ZINC_FINGER_C2H2_1	expasy.org/pros...
Null PS01358	View Gene Set	0.00161	25	0.0424	25	ZF_RANBP2_1	expasy.org/pros...
Null PS50199	View Gene Set	0.00161	23	0.0424	25	ZF_RANBP2_2	expasy.org/pros...
Null PS51038	View Gene Set	0.001615	11	0.0424	25	BAH	expasy.org/pros...
Null PS51273	View Gene Set	0.001572	6	0.0424	25	GATASE_TYPE_1	expasy.org/pros...
Null PS00847	View Gene Set	0.001799	6	0.04409	29	MCM_1	expasy.org/pros...
Null PS50128	View Gene Set	0.001785	6	0.04409	29	SURP	expasy.org/pros...
Null PS51151	View Gene Set	0.001955	9	0.04635	31	NAC_AB	expasy.org/pros...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null EC:3.6.4.13	View Gene Set	6.568e-05	13	0.01038	1	RNA helicase	expasy.org/enzy...
Null EC:3.4.25.1	View Gene Set	0.000505	20	0.0399	2	Proteasome endopeptidase complex	expasy.org/enzy...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.E2F1	View Gene Set	4.888e-06	12	0.0009239	1	Protein-protein-interaction for E2F1	www.ncbi.nlm.ni...
Null ppi.E2F4	View Gene Set	6.092e-05	14	0.005472	2	Protein-protein-interaction for E2F4	www.ncbi.nlm.ni...
Null ppi.RAD51	View Gene Set	8.685e-05	7	0.005472	2	Protein-protein-interaction for RAD51	www.ncbi.nlm.ni...
Null ppi.SNORD3A	View Gene Set	0.0004236	9	0.01637	4	Protein-protein-interaction for SNORD3A	www.ncbi.nlm.ni...
Null ppi.UXT	View Gene Set	0.0004332	8	0.01637	4	Protein-protein-interaction for UXT	www.ncbi.nlm.ni...
Null ppi.155871	View Gene Set	0.0006416	21	0.02021	6	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.POP1	View Gene Set	0.001258	5	0.02689	7	Protein-protein-interaction for POP1	www.ncbi.nlm.ni...
Null ppi.RIBIN	View Gene Set	0.001048	8	0.02689	7	Protein-protein-interaction for RIBIN	www.ncbi.nlm.ni...
Null ppi.RBL2	View Gene Set	0.00128	14	0.02689	7	Protein-protein-interaction for RBL2	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.002225	7	0.04204	10	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.POLR2G	View Gene Set	0.002565	5	0.04408	11	Protein-protein-interaction for POLR2G	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	2.76e-36	236	6.34e-33	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	7.954e-24	147	9.135e-21	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	8.563e-19	101	6.556e-16	3	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	2.541e-15	64	1.459e-12	4	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	4.025e-11	35	1.849e-08	5	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	4.731e-09	46	1.811e-06	6	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	1.473e-08	37	4.833e-06	7	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.GPN1	View Gene Set	3.79e-08	27	9.164e-06	8	Protein-protein-interaction for GPN1	www.ncbi.nlm.ni...
Null ppi.UCHL5	View Gene Set	3.192e-08	33	9.164e-06	8	Protein-protein-interaction for UCHL5	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	3.99e-08	42	9.164e-06	8	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	5.827e-08	53	1.217e-05	11	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.EIF3F	View Gene Set	3.526e-07	22	6.749e-05	12	Protein-protein-interaction for EIF3F	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	4.622e-07	38	7.79e-05	13	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.PSMD13	View Gene Set	4.748e-07	20	7.79e-05	13	Protein-protein-interaction for PSMD13	www.ncbi.nlm.ni...
Null ppi.USP39	View Gene Set	6.533e-07	15	0.0001	15	Protein-protein-interaction for USP39	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	1.262e-06	28	0.0001812	16	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	1.405e-06	50	0.0001898	17	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.PSMD6	View Gene Set	1.834e-06	21	0.000234	18	Protein-protein-interaction for PSMD6	www.ncbi.nlm.ni...
Null ppi.RPAP2	View Gene Set	1.971e-06	43	0.0002383	19	Protein-protein-interaction for RPAP2	www.ncbi.nlm.ni...
Null ppi.RUVBL2	View Gene Set	2.457e-06	64	0.0002822	20	Protein-protein-interaction for RUVBL2	www.ncbi.nlm.ni...
Null ppi.RNU12-2P	View Gene Set	3.37e-06	18	0.0003518	21	Protein-protein-interaction for RNU12-2P	www.ncbi.nlm.ni...
Null ppi.RNU11	View Gene Set	3.37e-06	18	0.0003518	21	Protein-protein-interaction for RNU11	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	4.768e-06	24	0.0004563	23	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.EIF3H	View Gene Set	4.639e-06	16	0.0004563	23	Protein-protein-interaction for EIF3H	www.ncbi.nlm.ni...
Null ppi.RRP1B	View Gene Set	5.722e-06	21	0.0005258	25	Protein-protein-interaction for RRP1B	www.ncbi.nlm.ni...
Null ppi.TP53BP1	View Gene Set	8.534e-06	13	0.0007539	26	Protein-protein-interaction for TP53BP1	www.ncbi.nlm.ni...
Null ppi.GTF3C3	View Gene Set	9.626e-06	11	0.0008189	27	Protein-protein-interaction for GTF3C3	www.ncbi.nlm.ni...
Null ppi.AURKA	View Gene Set	1.156e-05	9	0.0009482	28	Protein-protein-interaction for AURKA	www.ncbi.nlm.ni...
Null ppi.WWOX	View Gene Set	1.343e-05	19	0.001064	29	Protein-protein-interaction for WWOX	www.ncbi.nlm.ni...
Null ppi.RPA1	View Gene Set	1.509e-05	23	0.001155	30	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.CHTF18	View Gene Set	1.559e-05	13	0.001155	31	Protein-protein-interaction for CHTF18	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	1.613e-05	168	0.001158	32	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	1.869e-05	15	0.001301	33	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	2.1e-05	38	0.001419	34	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.PSMD14	View Gene Set	2.295e-05	16	0.001506	35	Protein-protein-interaction for PSMD14	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	2.527e-05	38	0.001613	36	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.USP14	View Gene Set	3.038e-05	22	0.001886	37	Protein-protein-interaction for USP14	www.ncbi.nlm.ni...
Null ppi.RAD51	View Gene Set	3.345e-05	12	0.002022	38	Protein-protein-interaction for RAD51	www.ncbi.nlm.ni...
Null ppi.USP36	View Gene Set	4.611e-05	17	0.002716	39	Protein-protein-interaction for USP36	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	4.936e-05	12	0.002835	40	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.PRPF19	View Gene Set	6.883e-05	9	0.003856	41	Protein-protein-interaction for PRPF19	www.ncbi.nlm.ni...
Null ppi.PRPF8	View Gene Set	7.415e-05	12	0.004056	42	Protein-protein-interaction for PRPF8	www.ncbi.nlm.ni...
Null ppi.PSMD7	View Gene Set	7.618e-05	12	0.004069	43	Protein-protein-interaction for PSMD7	www.ncbi.nlm.ni...
Null ppi.THAP1	View Gene Set	8.995e-05	11	0.004491	44	Protein-protein-interaction for THAP1	www.ncbi.nlm.ni...
Null ppi.LYAR	View Gene Set	8.936e-05	26	0.004491	44	Protein-protein-interaction for LYAR	www.ncbi.nlm.ni...
Null ppi.RPAP3	View Gene Set	8.854e-05	29	0.004491	44	Protein-protein-interaction for RPAP3	www.ncbi.nlm.ni...
Null ppi.NXF1	View Gene Set	9.721e-05	9	0.004706	47	Protein-protein-interaction for NXF1	www.ncbi.nlm.ni...
Null ppi.MLH1	View Gene Set	0.0001003	9	0.004706	47	Protein-protein-interaction for MLH1	www.ncbi.nlm.ni...
Null ppi.SUPT3H	View Gene Set	0.0001004	14	0.004706	47	Protein-protein-interaction for SUPT3H	www.ncbi.nlm.ni...
Null ppi.EIF3B	View Gene Set	0.0001077	10	0.004949	50	Protein-protein-interaction for EIF3B	www.ncbi.nlm.ni...
Null ppi.MGMT	View Gene Set	0.0001099	28	0.004951	51	Protein-protein-interaction for MGMT	www.ncbi.nlm.ni...
Null ppi.HDAC3	View Gene Set	0.0001191	92	0.005259	52	Protein-protein-interaction for HDAC3	www.ncbi.nlm.ni...
Null ppi.SF3B1	View Gene Set	0.0001418	24	0.006147	53	Protein-protein-interaction for SF3B1	www.ncbi.nlm.ni...
Null ppi.PAXIP1	View Gene Set	0.000145	18	0.006169	54	Protein-protein-interaction for PAXIP1	www.ncbi.nlm.ni...
Null ppi.NUP62	View Gene Set	0.0001517	15	0.006338	55	Protein-protein-interaction for NUP62	www.ncbi.nlm.ni...
Null ppi.KAT2A	View Gene Set	0.0001561	12	0.006403	56	Protein-protein-interaction for KAT2A	www.ncbi.nlm.ni...
Null ppi.SRPK2	View Gene Set	0.0001593	7	0.006418	57	Protein-protein-interaction for SRPK2	www.ncbi.nlm.ni...
Null ppi.CTCF	View Gene Set	0.0001646	6	0.006423	58	Protein-protein-interaction for CTCF	www.ncbi.nlm.ni...
Null ppi.TERF2	View Gene Set	0.000165	9	0.006423	58	Protein-protein-interaction for TERF2	www.ncbi.nlm.ni...
Null ppi.KLF13	View Gene Set	0.0001703	9	0.006518	60	Protein-protein-interaction for KLF13	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	0.0001896	71	0.007141	61	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	0.0001989	14	0.007367	62	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.PUF60	View Gene Set	0.0002051	31	0.007476	63	Protein-protein-interaction for PUF60	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	0.0002218	40	0.007802	64	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.GIYD2	View Gene Set	0.0002177	32	0.007802	64	Protein-protein-interaction for GIYD2	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	0.0002247	15	0.007802	64	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.HIST1H3A	View Gene Set	0.0002276	30	0.007802	64	Protein-protein-interaction for HIST1H3A	www.ncbi.nlm.ni...
Null ppi.MED30	View Gene Set	0.0002437	26	0.008232	68	Protein-protein-interaction for MED30	www.ncbi.nlm.ni...
Null ppi.KPNA6	View Gene Set	0.000251	6	0.008356	69	Protein-protein-interaction for KPNA6	www.ncbi.nlm.ni...
Null ppi.C20orf20	View Gene Set	0.0002629	15	0.008625	70	Protein-protein-interaction for C20orf20	www.ncbi.nlm.ni...
Null ppi.POLR3C	View Gene Set	0.0002765	10	0.008626	71	Protein-protein-interaction for POLR3C	www.ncbi.nlm.ni...
Null ppi.DDX20	View Gene Set	0.0002779	17	0.008626	71	Protein-protein-interaction for DDX20	www.ncbi.nlm.ni...
Null ppi.GIGYF2	View Gene Set	0.0002705	17	0.008626	71	Protein-protein-interaction for GIGYF2	www.ncbi.nlm.ni...
Null ppi.C16orf53	View Gene Set	0.0002684	9	0.008626	71	Protein-protein-interaction for C16orf53	www.ncbi.nlm.ni...
Null ppi.MRE11A	View Gene Set	0.0003071	13	0.00928	75	Protein-protein-interaction for MRE11A	www.ncbi.nlm.ni...
Null ppi.DPY30	View Gene Set	0.0003033	9	0.00928	75	Protein-protein-interaction for DPY30	www.ncbi.nlm.ni...
Null ppi.PDS5A	View Gene Set	0.0003293	6	0.009823	77	Protein-protein-interaction for PDS5A	www.ncbi.nlm.ni...
Null ppi.FANCA	View Gene Set	0.0003474	14	0.01006	78	Protein-protein-interaction for FANCA	www.ncbi.nlm.ni...
Null ppi.BRF2	View Gene Set	0.0003502	23	0.01006	78	Protein-protein-interaction for BRF2	www.ncbi.nlm.ni...
Null ppi.PAAF1	View Gene Set	0.0003491	20	0.01006	78	Protein-protein-interaction for PAAF1	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0003687	17	0.01045	81	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	0.0003841	27	0.01076	82	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.WDR48	View Gene Set	0.0003974	52	0.011	83	Protein-protein-interaction for WDR48	www.ncbi.nlm.ni...
Null ppi.SUPT16H	View Gene Set	0.0004093	11	0.01119	84	Protein-protein-interaction for SUPT16H	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	0.0004202	35	0.01136	85	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.PSMD10	View Gene Set	0.0004441	14	0.01173	86	Protein-protein-interaction for PSMD10	www.ncbi.nlm.ni...
Null ppi.USP11	View Gene Set	0.0004392	17	0.01173	86	Protein-protein-interaction for USP11	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.0004561	13	0.0119	88	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0004699	11	0.01213	89	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.0005432	38	0.01386	90	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.PPARGC1A	View Gene Set	0.0005667	33	0.01431	91	Protein-protein-interaction for PPARGC1A	www.ncbi.nlm.ni...
Null ppi.MCRS1	View Gene Set	0.0006166	16	0.01507	92	Protein-protein-interaction for MCRS1	www.ncbi.nlm.ni...
Null ppi.MPP6	View Gene Set	0.0006106	13	0.01507	92	Protein-protein-interaction for MPP6	www.ncbi.nlm.ni...
Null ppi.EIF3A	View Gene Set	0.0006141	12	0.01507	92	Protein-protein-interaction for EIF3A	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	0.0006631	11	0.01603	95	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.PPP4R2	View Gene Set	0.0006764	7	0.01603	96	Protein-protein-interaction for PPP4R2	www.ncbi.nlm.ni...
Null ppi.PTCD3	View Gene Set	0.0006911	6	0.01603	96	Protein-protein-interaction for PTCD3	www.ncbi.nlm.ni...
Null ppi.EIF3G	View Gene Set	0.0006843	8	0.01603	96	Protein-protein-interaction for EIF3G	www.ncbi.nlm.ni...
Null ppi.MED17	View Gene Set	0.0006795	15	0.01603	96	Protein-protein-interaction for MED17	www.ncbi.nlm.ni...
Null ppi.HABP4	View Gene Set	0.0007197	16	0.01653	100	Protein-protein-interaction for HABP4	www.ncbi.nlm.ni...
Null ppi.FANCD2	View Gene Set	0.0007348	6	0.01671	101	Protein-protein-interaction for FANCD2	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	0.0007437	20	0.01675	102	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.CXXC1	View Gene Set	0.0007959	13	0.01763	103	Protein-protein-interaction for CXXC1	www.ncbi.nlm.ni...
Null ppi.SMARCB1	View Gene Set	0.0007982	30	0.01763	103	Protein-protein-interaction for SMARCB1	www.ncbi.nlm.ni...
Null ppi.COPS8	View Gene Set	0.0008073	8	0.01766	105	Protein-protein-interaction for COPS8	www.ncbi.nlm.ni...
Null ppi.HIST2H3C	View Gene Set	0.0008543	26	0.01851	106	Protein-protein-interaction for HIST2H3C	www.ncbi.nlm.ni...
Null ppi.POLR1E	View Gene Set	0.00091	11	0.01954	107	Protein-protein-interaction for POLR1E	www.ncbi.nlm.ni...
Null ppi.DMAP1	View Gene Set	0.0009669	13	0.02034	108	Protein-protein-interaction for DMAP1	www.ncbi.nlm.ni...
Null ppi.VIM	View Gene Set	0.0009737	36	0.02034	108	Protein-protein-interaction for VIM	www.ncbi.nlm.ni...
Null ppi.HIST3H3	View Gene Set	0.0009739	16	0.02034	108	Protein-protein-interaction for HIST3H3	www.ncbi.nlm.ni...
Null ppi.MCM8	View Gene Set	0.000996	6	0.02061	111	Protein-protein-interaction for MCM8	www.ncbi.nlm.ni...
Null ppi.ZNF335	View Gene Set	0.001039	8	0.02131	112	Protein-protein-interaction for ZNF335	www.ncbi.nlm.ni...
Null ppi.CDCA5	View Gene Set	0.001095	6	0.02201	113	Protein-protein-interaction for CDCA5	www.ncbi.nlm.ni...
Null ppi.CBX3	View Gene Set	0.00109	23	0.02201	113	Protein-protein-interaction for CBX3	www.ncbi.nlm.ni...
Null ppi.RFWD2	View Gene Set	0.001102	26	0.02201	113	Protein-protein-interaction for RFWD2	www.ncbi.nlm.ni...
Null ppi.NUP43	View Gene Set	0.001149	6	0.02237	116	Protein-protein-interaction for NUP43	www.ncbi.nlm.ni...
Null ppi.MYST3	View Gene Set	0.001144	9	0.02237	116	Protein-protein-interaction for MYST3	www.ncbi.nlm.ni...
Null ppi.USP42	View Gene Set	0.001131	24	0.02237	116	Protein-protein-interaction for USP42	www.ncbi.nlm.ni...
Null ppi.CD3EAP	View Gene Set	0.00117	6	0.02259	119	Protein-protein-interaction for CD3EAP	www.ncbi.nlm.ni...
Null ppi.MAML3	View Gene Set	0.001208	10	0.02312	120	Protein-protein-interaction for MAML3	www.ncbi.nlm.ni...
Null ppi.BRIP1	View Gene Set	0.001274	8	0.02418	121	Protein-protein-interaction for BRIP1	www.ncbi.nlm.ni...
Null ppi.ZCCHC10	View Gene Set	0.001303	6	0.02453	122	Protein-protein-interaction for ZCCHC10	www.ncbi.nlm.ni...
Null ppi.EIF3C	View Gene Set	0.001323	6	0.0247	123	Protein-protein-interaction for EIF3C	www.ncbi.nlm.ni...
Null ppi.FAF2	View Gene Set	0.001363	7	0.02525	124	Protein-protein-interaction for FAF2	www.ncbi.nlm.ni...
Null ppi.HNF1A	View Gene Set	0.001381	12	0.02539	125	Protein-protein-interaction for HNF1A	www.ncbi.nlm.ni...
Null ppi.RBMX	View Gene Set	0.001455	15	0.02652	126	Protein-protein-interaction for RBMX	www.ncbi.nlm.ni...
Null ppi.ATXN7	View Gene Set	0.001511	10	0.02733	127	Protein-protein-interaction for ATXN7	www.ncbi.nlm.ni...
Null ppi.RAD54B	View Gene Set	0.00153	8	0.02746	128	Protein-protein-interaction for RAD54B	www.ncbi.nlm.ni...
Null ppi.GAR1	View Gene Set	0.001553	9	0.02765	129	Protein-protein-interaction for GAR1	www.ncbi.nlm.ni...
Null ppi.G3BP1	View Gene Set	0.001593	18	0.02814	130	Protein-protein-interaction for G3BP1	www.ncbi.nlm.ni...
Null ppi.NAA38	View Gene Set	0.001618	21	0.02838	131	Protein-protein-interaction for NAA38	www.ncbi.nlm.ni...
Null ppi.RPAP1	View Gene Set	0.001649	24	0.02842	132	Protein-protein-interaction for RPAP1	www.ncbi.nlm.ni...
Null ppi.STAT1	View Gene Set	0.001643	31	0.02842	132	Protein-protein-interaction for STAT1	www.ncbi.nlm.ni...
Null ppi.NUDT18	View Gene Set	0.00167	26	0.02842	132	Protein-protein-interaction for NUDT18	www.ncbi.nlm.ni...
Null ppi.CDC7	View Gene Set	0.001658	7	0.02842	132	Protein-protein-interaction for CDC7	www.ncbi.nlm.ni...
Null ppi.SEH1L	View Gene Set	0.001686	6	0.02848	136	Protein-protein-interaction for SEH1L	www.ncbi.nlm.ni...
Null ppi.USP43	View Gene Set	0.001745	9	0.02885	137	Protein-protein-interaction for USP43	www.ncbi.nlm.ni...
Null ppi.NEDD4	View Gene Set	0.001758	18	0.02885	137	Protein-protein-interaction for NEDD4	www.ncbi.nlm.ni...
Null ppi.RNMTL1	View Gene Set	0.001758	8	0.02885	137	Protein-protein-interaction for RNMTL1	www.ncbi.nlm.ni...
Null ppi.ZRANB2	View Gene Set	0.001724	6	0.02885	137	Protein-protein-interaction for ZRANB2	www.ncbi.nlm.ni...
Null ppi.PRMT1	View Gene Set	0.001771	15	0.02885	141	Protein-protein-interaction for PRMT1	www.ncbi.nlm.ni...
Null ppi.WDR8	View Gene Set	0.001809	23	0.02926	142	Protein-protein-interaction for WDR8	www.ncbi.nlm.ni...
Null ppi.NCOR1	View Gene Set	0.001858	84	0.02985	143	Protein-protein-interaction for NCOR1	www.ncbi.nlm.ni...
Null ppi.TADA3	View Gene Set	0.00198	21	0.03014	144	Protein-protein-interaction for TADA3	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	0.00194	9	0.03014	144	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.ORC5L	View Gene Set	0.001938	8	0.03014	144	Protein-protein-interaction for ORC5L	www.ncbi.nlm.ni...
Null ppi.SRRT	View Gene Set	0.001948	7	0.03014	144	Protein-protein-interaction for SRRT	www.ncbi.nlm.ni...
Null ppi.XRN1	View Gene Set	0.001982	12	0.03014	144	Protein-protein-interaction for XRN1	www.ncbi.nlm.ni...
Null ppi.POLR3E	View Gene Set	0.001946	6	0.03014	144	Protein-protein-interaction for POLR3E	www.ncbi.nlm.ni...
Null ppi.TRAF6	View Gene Set	0.00197	47	0.03014	144	Protein-protein-interaction for TRAF6	www.ncbi.nlm.ni...
Null ppi.CHD1L	View Gene Set	0.001955	15	0.03014	144	Protein-protein-interaction for CHD1L	www.ncbi.nlm.ni...
Null ppi.HCFC2	View Gene Set	0.002005	7	0.03025	152	Protein-protein-interaction for HCFC2	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	0.002015	11	0.03025	152	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.002047	10	0.03053	154	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.MYSM1	View Gene Set	0.002138	13	0.03168	155	Protein-protein-interaction for MYSM1	www.ncbi.nlm.ni...
Null ppi.STAP1	View Gene Set	0.002191	7	0.03227	156	Protein-protein-interaction for STAP1	www.ncbi.nlm.ni...
Null ppi.UBA1	View Gene Set	0.002237	7	0.03273	157	Protein-protein-interaction for UBA1	www.ncbi.nlm.ni...
Null ppi.CD2BP2	View Gene Set	0.002257	13	0.03281	158	Protein-protein-interaction for CD2BP2	www.ncbi.nlm.ni...
Null ppi.KAT5	View Gene Set	0.002333	51	0.03295	159	Protein-protein-interaction for KAT5	www.ncbi.nlm.ni...
Null ppi.EEF1G	View Gene Set	0.002293	9	0.03295	159	Protein-protein-interaction for EEF1G	www.ncbi.nlm.ni...
Null ppi.SIN3A	View Gene Set	0.002303	104	0.03295	159	Protein-protein-interaction for SIN3A	www.ncbi.nlm.ni...
Null ppi.KPNA3	View Gene Set	0.002312	6	0.03295	159	Protein-protein-interaction for KPNA3	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.002338	9	0.03295	159	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.TERF1	View Gene Set	0.002377	15	0.03329	164	Protein-protein-interaction for TERF1	www.ncbi.nlm.ni...
Null ppi.HIST4H4	View Gene Set	0.002407	21	0.0333	165	Protein-protein-interaction for HIST4H4	www.ncbi.nlm.ni...
Null ppi.MIS12	View Gene Set	0.0024	9	0.0333	165	Protein-protein-interaction for MIS12	www.ncbi.nlm.ni...
Null ppi.MED13	View Gene Set	0.002436	10	0.0335	167	Protein-protein-interaction for MED13	www.ncbi.nlm.ni...
Null ppi.CPSF6	View Gene Set	0.002478	12	0.03359	168	Protein-protein-interaction for CPSF6	www.ncbi.nlm.ni...
Null ppi.SF3B3	View Gene Set	0.002466	16	0.03359	168	Protein-protein-interaction for SF3B3	www.ncbi.nlm.ni...
Null ppi.ZNF496	View Gene Set	0.002486	13	0.03359	168	Protein-protein-interaction for ZNF496	www.ncbi.nlm.ni...
Null ppi.FAN1	View Gene Set	0.002539	13	0.0341	171	Protein-protein-interaction for FAN1	www.ncbi.nlm.ni...
Null ppi.GEMIN5	View Gene Set	0.002707	11	0.03615	172	Protein-protein-interaction for GEMIN5	www.ncbi.nlm.ni...
Null ppi.SETD1A	View Gene Set	0.002728	7	0.03622	173	Protein-protein-interaction for SETD1A	www.ncbi.nlm.ni...
Null ppi.ITCH	View Gene Set	0.002761	57	0.03645	174	Protein-protein-interaction for ITCH	www.ncbi.nlm.ni...
Null ppi.ANAPC2	View Gene Set	0.002821	6	0.03693	175	Protein-protein-interaction for ANAPC2	www.ncbi.nlm.ni...
Null ppi.LSM7	View Gene Set	0.002843	13	0.03693	175	Protein-protein-interaction for LSM7	www.ncbi.nlm.ni...
Null ppi.HIST2H2BE	View Gene Set	0.002846	17	0.03693	175	Protein-protein-interaction for HIST2H2BE	www.ncbi.nlm.ni...
Null ppi.MYST1	View Gene Set	0.002887	14	0.03726	178	Protein-protein-interaction for MYST1	www.ncbi.nlm.ni...
Null ppi.NLK	View Gene Set	0.003084	15	0.03958	179	Protein-protein-interaction for NLK	www.ncbi.nlm.ni...
Null ppi.HUWE1	View Gene Set	0.003125	8	0.03971	180	Protein-protein-interaction for HUWE1	www.ncbi.nlm.ni...
Null ppi.PCNA	View Gene Set	0.003131	40	0.03971	180	Protein-protein-interaction for PCNA	www.ncbi.nlm.ni...
Null ppi.ZBTB8A	View Gene Set	0.003151	18	0.03971	180	Protein-protein-interaction for ZBTB8A	www.ncbi.nlm.ni...
Null ppi.TAF1A	View Gene Set	0.003164	14	0.03971	180	Protein-protein-interaction for TAF1A	www.ncbi.nlm.ni...
Null ppi.TAF1D	View Gene Set	0.003189	21	0.03981	184	Protein-protein-interaction for TAF1D	www.ncbi.nlm.ni...
Null ppi.SNUPN	View Gene Set	0.003334	10	0.04071	185	Protein-protein-interaction for SNUPN	www.ncbi.nlm.ni...
Null ppi.PTGES3	View Gene Set	0.00334	10	0.04071	185	Protein-protein-interaction for PTGES3	www.ncbi.nlm.ni...
Null ppi.SAFB	View Gene Set	0.00335	7	0.04071	185	Protein-protein-interaction for SAFB	www.ncbi.nlm.ni...
Null ppi.XPO1	View Gene Set	0.003309	24	0.04071	185	Protein-protein-interaction for XPO1	www.ncbi.nlm.ni...
Null ppi.PTTG1	View Gene Set	0.003325	11	0.04071	185	Protein-protein-interaction for PTTG1	www.ncbi.nlm.ni...
Null ppi.POLR2A	View Gene Set	0.003401	25	0.0411	190	Protein-protein-interaction for POLR2A	www.ncbi.nlm.ni...
Null ppi.TAF12	View Gene Set	0.003418	10	0.0411	190	Protein-protein-interaction for TAF12	www.ncbi.nlm.ni...
Null ppi.USP3	View Gene Set	0.003493	15	0.04179	192	Protein-protein-interaction for USP3	www.ncbi.nlm.ni...
Null ppi.WBP11	View Gene Set	0.003568	10	0.04233	193	Protein-protein-interaction for WBP11	www.ncbi.nlm.ni...
Null ppi.ING3	View Gene Set	0.003612	10	0.04233	193	Protein-protein-interaction for ING3	www.ncbi.nlm.ni...
Null ppi.WDR33	View Gene Set	0.003595	13	0.04233	193	Protein-protein-interaction for WDR33	www.ncbi.nlm.ni...
Null ppi.RAD17	View Gene Set	0.003611	13	0.04233	193	Protein-protein-interaction for RAD17	www.ncbi.nlm.ni...
Null ppi.MED15	View Gene Set	0.003634	15	0.04237	197	Protein-protein-interaction for MED15	www.ncbi.nlm.ni...
Null ppi.SMNDC1	View Gene Set	0.003716	8	0.04289	198	Protein-protein-interaction for SMNDC1	www.ncbi.nlm.ni...
Null ppi.MSH2	View Gene Set	0.003703	16	0.04289	198	Protein-protein-interaction for MSH2	www.ncbi.nlm.ni...
Null ppi.IMMT	View Gene Set	0.003895	15	0.04451	200	Protein-protein-interaction for IMMT	www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.SFRS12	View Gene Set	3.436e-14	49	8.157e-11	1	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	8.431e-07	166	0.001001	2	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	2.431e-06	13	0.001924	3	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.SUMO4	View Gene Set	5.245e-06	76	0.002491	4	Protein-protein-interaction for SUMO4	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	4.624e-06	55	0.002491	4	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.NXF1	View Gene Set	1.337e-05	14	0.005292	6	Protein-protein-interaction for NXF1	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	2.351e-05	20	0.007972	7	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.NDRG1	View Gene Set	0.0002346	58	0.03419	8	Protein-protein-interaction for NDRG1	www.ncbi.nlm.ni...
Null ppi.IVNS1ABP	View Gene Set	0.0001308	6	0.03419	8	Protein-protein-interaction for IVNS1ABP	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.0002381	22	0.03419	8	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.NUP62	View Gene Set	0.0003577	19	0.03419	8	Protein-protein-interaction for NUP62	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.000363	11	0.03419	8	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.ORC5L	View Gene Set	0.000247	10	0.03419	8	Protein-protein-interaction for ORC5L	www.ncbi.nlm.ni...
Null ppi.MPP6	View Gene Set	0.0003232	18	0.03419	8	Protein-protein-interaction for MPP6	www.ncbi.nlm.ni...
Null ppi.NAA38	View Gene Set	0.0003764	20	0.03419	8	Protein-protein-interaction for NAA38	www.ncbi.nlm.ni...
Null ppi.WBP11	View Gene Set	0.0002501	15	0.03419	8	Protein-protein-interaction for WBP11	www.ncbi.nlm.ni...
Null ppi.PLK1	View Gene Set	0.0003117	14	0.03419	8	Protein-protein-interaction for PLK1	www.ncbi.nlm.ni...
Null ppi.XRN1	View Gene Set	0.0003694	24	0.03419	8	Protein-protein-interaction for XRN1	www.ncbi.nlm.ni...
Null ppi.THAP1	View Gene Set	0.0003406	10	0.03419	8	Protein-protein-interaction for THAP1	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	0.0002553	18	0.03419	8	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	0.0002771	13	0.03419	8	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	0.0001674	10	0.03419	8	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.DNAJC7	View Gene Set	0.0001641	8	0.03419	8	Protein-protein-interaction for DNAJC7	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	0.0001596	17	0.03419	8	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.YWHAG	View Gene Set	0.0003888	106	0.03419	8	Protein-protein-interaction for YWHAG	www.ncbi.nlm.ni...
Null ppi.SNIP1	View Gene Set	0.0002331	27	0.03419	8	Protein-protein-interaction for SNIP1	www.ncbi.nlm.ni...
Null ppi.PTTG1	View Gene Set	0.0002682	8	0.03419	8	Protein-protein-interaction for PTTG1	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.000404	8	0.03426	28	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.BRAP	View Gene Set	0.0004574	5	0.0362	29	Protein-protein-interaction for BRAP	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	0.0004522	11	0.0362	29	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.EIF5	View Gene Set	0.0005174	6	0.03722	31	Protein-protein-interaction for EIF5	www.ncbi.nlm.ni...
Null ppi.UPF2	View Gene Set	0.0004994	16	0.03722	31	Protein-protein-interaction for UPF2	www.ncbi.nlm.ni...
Null ppi.COIL	View Gene Set	0.0005073	19	0.03722	31	Protein-protein-interaction for COIL	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.000565	27	0.03801	34	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.SGOL1	View Gene Set	0.0005563	20	0.03801	34	Protein-protein-interaction for SGOL1	www.ncbi.nlm.ni...
Null ppi.XRN2	View Gene Set	0.0007686	9	0.03801	34	Protein-protein-interaction for XRN2	www.ncbi.nlm.ni...
Null ppi.PUF60	View Gene Set	0.0007376	9	0.03801	34	Protein-protein-interaction for PUF60	www.ncbi.nlm.ni...
Null ppi.NCBP2	View Gene Set	0.000742	6	0.03801	34	Protein-protein-interaction for NCBP2	www.ncbi.nlm.ni...
Null ppi.SF3B1	View Gene Set	0.0007233	9	0.03801	34	Protein-protein-interaction for SF3B1	www.ncbi.nlm.ni...
Null ppi.PABPC1	View Gene Set	0.0006371	21	0.03801	34	Protein-protein-interaction for PABPC1	www.ncbi.nlm.ni...
Null ppi.PRMT1	View Gene Set	0.000626	13	0.03801	34	Protein-protein-interaction for PRMT1	www.ncbi.nlm.ni...
Null ppi.RAN	View Gene Set	0.0007403	14	0.03801	34	Protein-protein-interaction for RAN	www.ncbi.nlm.ni...
Null ppi.SMN2	View Gene Set	0.0006303	9	0.03801	34	Protein-protein-interaction for SMN2	www.ncbi.nlm.ni...
Null ppi.ZNF655	View Gene Set	0.0005926	8	0.03801	34	Protein-protein-interaction for ZNF655	www.ncbi.nlm.ni...
Null ppi.NUDT18	View Gene Set	0.0007029	27	0.03801	34	Protein-protein-interaction for NUDT18	www.ncbi.nlm.ni...
Null ppi.EIF3G	View Gene Set	0.0006689	7	0.03801	34	Protein-protein-interaction for EIF3G	www.ncbi.nlm.ni...
Null ppi.EIF2S2	View Gene Set	0.0007666	17	0.03801	34	Protein-protein-interaction for EIF2S2	www.ncbi.nlm.ni...
Null ppi.TAF1A	View Gene Set	0.0006557	7	0.03801	34	Protein-protein-interaction for TAF1A	www.ncbi.nlm.ni...
Null ppi.SAFB	View Gene Set	0.000847	8	0.04104	49	Protein-protein-interaction for SAFB	www.ncbi.nlm.ni...
Null ppi.POLR2G	View Gene Set	0.0009007	7	0.04277	50	Protein-protein-interaction for POLR2G	www.ncbi.nlm.ni...
Null ppi.LSM1	View Gene Set	0.0009244	16	0.04303	51	Protein-protein-interaction for LSM1	www.ncbi.nlm.ni...
Null ppi.SRPK1	View Gene Set	0.0009796	12	0.04322	52	Protein-protein-interaction for SRPK1	www.ncbi.nlm.ni...
Null ppi.NOL12	View Gene Set	0.0009831	7	0.04322	52	Protein-protein-interaction for NOL12	www.ncbi.nlm.ni...
Null ppi.CDC16	View Gene Set	0.0009654	10	0.04322	52	Protein-protein-interaction for CDC16	www.ncbi.nlm.ni...
Null ppi.PSMB7	View Gene Set	0.001004	6	0.04333	55	Protein-protein-interaction for PSMB7	www.ncbi.nlm.ni...
Null ppi.HDAC1	View Gene Set	0.001097	28	0.04649	56	Protein-protein-interaction for HDAC1	www.ncbi.nlm.ni...
Null ppi.ANAPC2	View Gene Set	0.001159	6	0.04828	57	Protein-protein-interaction for ANAPC2	www.ncbi.nlm.ni...
Null ppi.NUP98	View Gene Set	0.00121	8	0.04954	58	Protein-protein-interaction for NUP98	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	2.162e-38	251	7.771e-35	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	7.954e-24	147	1.429e-20	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	8.563e-19	101	1.026e-15	3	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	1.181e-14	66	9.423e-12	4	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.SFRS12	View Gene Set	1.311e-14	50	9.423e-12	4	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	7.843e-12	96	4.698e-09	6	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	4.025e-11	35	2.067e-08	7	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	4.396e-09	42	1.975e-06	8	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	6.785e-09	48	2.71e-06	9	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.GPN1	View Gene Set	3.79e-08	27	1.304e-05	10	Protein-protein-interaction for GPN1	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	3.99e-08	42	1.304e-05	10	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.UCHL5	View Gene Set	5.223e-08	34	1.564e-05	12	Protein-protein-interaction for UCHL5	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	1.308e-07	220	3.616e-05	13	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	3.336e-07	31	8.563e-05	14	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.PSMD13	View Gene Set	4.748e-07	20	0.0001138	15	Protein-protein-interaction for PSMD13	www.ncbi.nlm.ni...
Null ppi.EIF3F	View Gene Set	8.558e-07	25	0.0001922	16	Protein-protein-interaction for EIF3F	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	1.052e-06	21	0.0002225	17	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	1.31e-06	16	0.0002616	18	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.NXF1	View Gene Set	1.401e-06	17	0.000265	19	Protein-protein-interaction for NXF1	www.ncbi.nlm.ni...
Null ppi.RPAP2	View Gene Set	1.971e-06	43	0.0003542	20	Protein-protein-interaction for RPAP2	www.ncbi.nlm.ni...
Null ppi.SF3B1	View Gene Set	3.317e-06	31	0.0004844	21	Protein-protein-interaction for SF3B1	www.ncbi.nlm.ni...
Null ppi.RNU12-2P	View Gene Set	3.37e-06	18	0.0004844	21	Protein-protein-interaction for RNU12-2P	www.ncbi.nlm.ni...
Null ppi.RNU11	View Gene Set	3.37e-06	18	0.0004844	21	Protein-protein-interaction for RNU11	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	3.056e-06	25	0.0004844	21	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.PSMD6	View Gene Set	3.19e-06	23	0.0004844	21	Protein-protein-interaction for PSMD6	www.ncbi.nlm.ni...
Null ppi.USP39	View Gene Set	4.668e-06	16	0.0005992	26	Protein-protein-interaction for USP39	www.ncbi.nlm.ni...
Null ppi.NUP62	View Gene Set	4.42e-06	25	0.0005992	26	Protein-protein-interaction for NUP62	www.ncbi.nlm.ni...
Null ppi.EIF3H	View Gene Set	4.639e-06	16	0.0005992	26	Protein-protein-interaction for EIF3H	www.ncbi.nlm.ni...
Null ppi.SUMO4	View Gene Set	5.245e-06	76	0.0006501	29	Protein-protein-interaction for SUMO4	www.ncbi.nlm.ni...
Null ppi.RRP1B	View Gene Set	5.722e-06	21	0.0006855	30	Protein-protein-interaction for RRP1B	www.ncbi.nlm.ni...
Null ppi.SGOL1	View Gene Set	9.942e-06	24	0.001117	31	Protein-protein-interaction for SGOL1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	9.734e-06	15	0.001117	31	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	1.152e-05	49	0.001255	33	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.GTF3C3	View Gene Set	1.407e-05	12	0.001488	34	Protein-protein-interaction for GTF3C3	www.ncbi.nlm.ni...
Null ppi.CHTF18	View Gene Set	1.559e-05	13	0.001601	35	Protein-protein-interaction for CHTF18	www.ncbi.nlm.ni...
Null ppi.PSMD14	View Gene Set	2.295e-05	16	0.002291	36	Protein-protein-interaction for PSMD14	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	2.842e-05	44	0.002699	37	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.NAA38	View Gene Set	2.854e-05	28	0.002699	37	Protein-protein-interaction for NAA38	www.ncbi.nlm.ni...
Null ppi.PRPF8	View Gene Set	3.184e-05	14	0.002725	39	Protein-protein-interaction for PRPF8	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	3.163e-05	46	0.002725	39	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.UPF2	View Gene Set	3.092e-05	19	0.002725	39	Protein-protein-interaction for UPF2	www.ncbi.nlm.ni...
Null ppi.USP14	View Gene Set	3.038e-05	22	0.002725	39	Protein-protein-interaction for USP14	www.ncbi.nlm.ni...
Null ppi.RUVBL2	View Gene Set	3.506e-05	72	0.002788	43	Protein-protein-interaction for RUVBL2	www.ncbi.nlm.ni...
Null ppi.PSMD7	View Gene Set	3.643e-05	13	0.002788	43	Protein-protein-interaction for PSMD7	www.ncbi.nlm.ni...
Null ppi.RPA1	View Gene Set	3.49e-05	24	0.002788	43	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	3.646e-05	55	0.002788	43	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	3.469e-05	52	0.002788	43	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.USP36	View Gene Set	4.611e-05	17	0.003452	48	Protein-protein-interaction for USP36	www.ncbi.nlm.ni...
Null ppi.THAP1	View Gene Set	5.211e-05	12	0.003675	49	Protein-protein-interaction for THAP1	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	5.126e-05	21	0.003675	49	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	5.215e-05	41	0.003675	49	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.RPAP3	View Gene Set	6.101e-05	30	0.004217	52	Protein-protein-interaction for RPAP3	www.ncbi.nlm.ni...
Null ppi.PUF60	View Gene Set	6.402e-05	35	0.004261	53	Protein-protein-interaction for PUF60	www.ncbi.nlm.ni...
Null ppi.MLH1	View Gene Set	6.368e-05	12	0.004261	53	Protein-protein-interaction for MLH1	www.ncbi.nlm.ni...
Null ppi.KAT2A	View Gene Set	6.97e-05	14	0.004374	55	Protein-protein-interaction for KAT2A	www.ncbi.nlm.ni...
Null ppi.PRPF19	View Gene Set	6.883e-05	9	0.004374	55	Protein-protein-interaction for PRPF19	www.ncbi.nlm.ni...
Null ppi.ORC5L	View Gene Set	6.789e-05	11	0.004374	55	Protein-protein-interaction for ORC5L	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	7.059e-05	24	0.004374	55	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.WWOX	View Gene Set	7.203e-05	26	0.004388	59	Protein-protein-interaction for WWOX	www.ncbi.nlm.ni...
Null ppi.CDC20	View Gene Set	7.407e-05	5	0.004437	60	Protein-protein-interaction for CDC20	www.ncbi.nlm.ni...
Null ppi.TERF2	View Gene Set	8.408e-05	10	0.004954	61	Protein-protein-interaction for TERF2	www.ncbi.nlm.ni...
Null ppi.EIF3B	View Gene Set	8.568e-05	11	0.004967	62	Protein-protein-interaction for EIF3B	www.ncbi.nlm.ni...
Null ppi.LYAR	View Gene Set	8.936e-05	26	0.005098	63	Protein-protein-interaction for LYAR	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	9.934e-05	20	0.005466	64	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	0.0001003	29	0.005466	64	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.SUPT3H	View Gene Set	0.0001004	14	0.005466	64	Protein-protein-interaction for SUPT3H	www.ncbi.nlm.ni...
Null ppi.MGMT	View Gene Set	0.0001099	28	0.005896	67	Protein-protein-interaction for MGMT	www.ncbi.nlm.ni...
Null ppi.RAD51	View Gene Set	0.0001116	20	0.005897	68	Protein-protein-interaction for RAD51	www.ncbi.nlm.ni...
Null ppi.UBA1	View Gene Set	0.0001168	11	0.006085	69	Protein-protein-interaction for UBA1	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.0001284	33	0.006591	70	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.C20orf20	View Gene Set	0.0001302	16	0.006592	71	Protein-protein-interaction for C20orf20	www.ncbi.nlm.ni...
Null ppi.BRF2	View Gene Set	0.0001484	25	0.007409	72	Protein-protein-interaction for BRF2	www.ncbi.nlm.ni...
Null ppi.IVNS1ABP	View Gene Set	0.0001575	7	0.007465	73	Protein-protein-interaction for IVNS1ABP	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	0.0001628	39	0.007465	73	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.COPS8	View Gene Set	0.0001636	13	0.007465	73	Protein-protein-interaction for COPS8	www.ncbi.nlm.ni...
Null ppi.SRPK2	View Gene Set	0.0001593	7	0.007465	73	Protein-protein-interaction for SRPK2	www.ncbi.nlm.ni...
Null ppi.TP53BP2	View Gene Set	0.0001595	17	0.007465	73	Protein-protein-interaction for TP53BP2	www.ncbi.nlm.ni...
Null ppi.DNAJC7	View Gene Set	0.0001641	8	0.007465	73	Protein-protein-interaction for DNAJC7	www.ncbi.nlm.ni...
Null ppi.UBE3A	View Gene Set	0.0001605	22	0.007465	73	Protein-protein-interaction for UBE3A	www.ncbi.nlm.ni...
Null ppi.XRN1	View Gene Set	0.0001741	25	0.007723	80	Protein-protein-interaction for XRN1	www.ncbi.nlm.ni...
Null ppi.AURKA	View Gene Set	0.0001733	16	0.007723	80	Protein-protein-interaction for AURKA	www.ncbi.nlm.ni...
Null ppi.PSMD10	View Gene Set	0.0001762	16	0.007724	82	Protein-protein-interaction for PSMD10	www.ncbi.nlm.ni...
Null ppi.E2F4	View Gene Set	0.0002007	16	0.008692	83	Protein-protein-interaction for E2F4	www.ncbi.nlm.ni...
Null ppi.BRAP	View Gene Set	0.0002059	6	0.008811	84	Protein-protein-interaction for BRAP	www.ncbi.nlm.ni...
Null ppi.GIYD2	View Gene Set	0.0002177	32	0.009203	85	Protein-protein-interaction for GIYD2	www.ncbi.nlm.ni...
Null ppi.NDRG1	View Gene Set	0.0002346	58	0.009802	86	Protein-protein-interaction for NDRG1	www.ncbi.nlm.ni...
Null ppi.TPX2	View Gene Set	0.0002397	5	0.009841	87	Protein-protein-interaction for TPX2	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.0002412	14	0.009841	87	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.MED30	View Gene Set	0.0002437	26	0.009841	87	Protein-protein-interaction for MED30	www.ncbi.nlm.ni...
Null ppi.C16orf53	View Gene Set	0.0002684	9	0.01072	90	Protein-protein-interaction for C16orf53	www.ncbi.nlm.ni...
Null ppi.POLR3C	View Gene Set	0.0002765	10	0.01083	91	Protein-protein-interaction for POLR3C	www.ncbi.nlm.ni...
Null ppi.KPNA6	View Gene Set	0.0002772	12	0.01083	91	Protein-protein-interaction for KPNA6	www.ncbi.nlm.ni...
Null ppi.MSH2	View Gene Set	0.000285	20	0.01101	93	Protein-protein-interaction for MSH2	www.ncbi.nlm.ni...
Null ppi.MCRS1	View Gene Set	0.0002906	17	0.01111	94	Protein-protein-interaction for MCRS1	www.ncbi.nlm.ni...
Null ppi.TERF1	View Gene Set	0.0003003	18	0.01136	95	Protein-protein-interaction for TERF1	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.0003042	12	0.01139	96	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.0003207	11	0.01188	97	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.PPARGC1A	View Gene Set	0.000331	39	0.01202	98	Protein-protein-interaction for PPARGC1A	www.ncbi.nlm.ni...
Null ppi.PDS5A	View Gene Set	0.0003293	6	0.01202	98	Protein-protein-interaction for PDS5A	www.ncbi.nlm.ni...
Null ppi.CD3EAP	View Gene Set	0.0003432	8	0.01203	100	Protein-protein-interaction for CD3EAP	www.ncbi.nlm.ni...
Null ppi.FANCA	View Gene Set	0.0003474	14	0.01203	100	Protein-protein-interaction for FANCA	www.ncbi.nlm.ni...
Null ppi.CXXC1	View Gene Set	0.0003394	14	0.01203	100	Protein-protein-interaction for CXXC1	www.ncbi.nlm.ni...
Null ppi.PCNA	View Gene Set	0.0003481	47	0.01203	100	Protein-protein-interaction for PCNA	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	0.0003514	18	0.01203	100	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.PAAF1	View Gene Set	0.0003491	20	0.01203	100	Protein-protein-interaction for PAAF1	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0003687	17	0.0125	106	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.EIF3C	View Gene Set	0.0003779	9	0.01269	107	Protein-protein-interaction for EIF3C	www.ncbi.nlm.ni...
Null ppi.HIST2H3C	View Gene Set	0.0003844	31	0.01279	108	Protein-protein-interaction for HIST2H3C	www.ncbi.nlm.ni...
Null ppi.COPS7A	View Gene Set	0.000402	19	0.0129	109	Protein-protein-interaction for COPS7A	www.ncbi.nlm.ni...
Null ppi.WDR48	View Gene Set	0.0003974	52	0.0129	109	Protein-protein-interaction for WDR48	www.ncbi.nlm.ni...
Null ppi.SNIP1	View Gene Set	0.0004039	28	0.0129	109	Protein-protein-interaction for SNIP1	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	0.0003968	88	0.0129	109	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.MED17	View Gene Set	0.0004056	16	0.0129	109	Protein-protein-interaction for MED17	www.ncbi.nlm.ni...
Null ppi.POLR1E	View Gene Set	0.0004207	13	0.01324	114	Protein-protein-interaction for POLR1E	www.ncbi.nlm.ni...
Null ppi.SNORD3A	View Gene Set	0.0004236	9	0.01324	114	Protein-protein-interaction for SNORD3A	www.ncbi.nlm.ni...
Null ppi.TP53BP1	View Gene Set	0.0004321	17	0.01339	116	Protein-protein-interaction for TP53BP1	www.ncbi.nlm.ni...
Null ppi.USP11	View Gene Set	0.0004392	17	0.01349	117	Protein-protein-interaction for USP11	www.ncbi.nlm.ni...
Null ppi.NUTF2	View Gene Set	0.0004561	5	0.01375	118	Protein-protein-interaction for NUTF2	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0004699	11	0.01375	118	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.ORC6L	View Gene Set	0.0004707	15	0.01375	118	Protein-protein-interaction for ORC6L	www.ncbi.nlm.ni...
Null ppi.SRRT	View Gene Set	0.0004668	8	0.01375	118	Protein-protein-interaction for SRRT	www.ncbi.nlm.ni...
Null ppi.PLK1	View Gene Set	0.0004639	22	0.01375	118	Protein-protein-interaction for PLK1	www.ncbi.nlm.ni...
Null ppi.HIST1H3A	View Gene Set	0.0004662	31	0.01375	118	Protein-protein-interaction for HIST1H3A	www.ncbi.nlm.ni...
Null ppi.SMNDC1	View Gene Set	0.0004857	10	0.01408	124	Protein-protein-interaction for SMNDC1	www.ncbi.nlm.ni...
Null ppi.LSM1	View Gene Set	0.0005097	18	0.01447	125	Protein-protein-interaction for LSM1	www.ncbi.nlm.ni...
Null ppi.MPP6	View Gene Set	0.0005115	19	0.01447	125	Protein-protein-interaction for MPP6	www.ncbi.nlm.ni...
Null ppi.COIL	View Gene Set	0.0005073	20	0.01447	125	Protein-protein-interaction for COIL	www.ncbi.nlm.ni...
Null ppi.EIF5	View Gene Set	0.0005174	6	0.01453	128	Protein-protein-interaction for EIF5	www.ncbi.nlm.ni...
Null ppi.SUPT16H	View Gene Set	0.0005356	15	0.01481	129	Protein-protein-interaction for SUPT16H	www.ncbi.nlm.ni...
Null ppi.PABPC1	View Gene Set	0.0005352	37	0.01481	129	Protein-protein-interaction for PABPC1	www.ncbi.nlm.ni...
Null ppi.ANAPC2	View Gene Set	0.0005535	8	0.01519	131	Protein-protein-interaction for ANAPC2	www.ncbi.nlm.ni...
Null ppi.TAF1A	View Gene Set	0.0005769	16	0.01571	132	Protein-protein-interaction for TAF1A	www.ncbi.nlm.ni...
Null ppi.MCM5	View Gene Set	0.0005822	7	0.01573	133	Protein-protein-interaction for MCM5	www.ncbi.nlm.ni...
Null ppi.ZNF655	View Gene Set	0.0005926	8	0.01589	134	Protein-protein-interaction for ZNF655	www.ncbi.nlm.ni...
Null ppi.PTTG1	View Gene Set	0.0006175	13	0.01644	135	Protein-protein-interaction for PTTG1	www.ncbi.nlm.ni...
Null ppi.GIGYF2	View Gene Set	0.0006497	19	0.01717	136	Protein-protein-interaction for GIGYF2	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	0.0006631	11	0.0174	137	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.PPP4R2	View Gene Set	0.0006764	7	0.01741	138	Protein-protein-interaction for PPP4R2	www.ncbi.nlm.ni...
Null ppi.FAF2	View Gene Set	0.0006916	8	0.01741	138	Protein-protein-interaction for FAF2	www.ncbi.nlm.ni...
Null ppi.PRMT1	View Gene Set	0.0006904	17	0.01741	138	Protein-protein-interaction for PRMT1	www.ncbi.nlm.ni...
Null ppi.WBP11	View Gene Set	0.0006929	17	0.01741	138	Protein-protein-interaction for WBP11	www.ncbi.nlm.ni...
Null ppi.ATXN7	View Gene Set	0.0006803	11	0.01741	138	Protein-protein-interaction for ATXN7	www.ncbi.nlm.ni...
Null ppi.EIF3G	View Gene Set	0.0006843	8	0.01741	138	Protein-protein-interaction for EIF3G	www.ncbi.nlm.ni...
Null ppi.NUDT18	View Gene Set	0.0007029	27	0.01754	144	Protein-protein-interaction for NUDT18	www.ncbi.nlm.ni...
Null ppi.DSCC1	View Gene Set	0.0007113	6	0.01763	145	Protein-protein-interaction for DSCC1	www.ncbi.nlm.ni...
Null ppi.E2F1	View Gene Set	0.0007428	24	0.01792	146	Protein-protein-interaction for E2F1	www.ncbi.nlm.ni...
Null ppi.NCBP2	View Gene Set	0.000742	6	0.01792	146	Protein-protein-interaction for NCBP2	www.ncbi.nlm.ni...
Null ppi.USP7	View Gene Set	0.0007431	32	0.01792	146	Protein-protein-interaction for USP7	www.ncbi.nlm.ni...
Null ppi.HIST2H2BE	View Gene Set	0.0007354	27	0.01792	146	Protein-protein-interaction for HIST2H2BE	www.ncbi.nlm.ni...
Null ppi.XRN2	View Gene Set	0.0007686	9	0.01829	150	Protein-protein-interaction for XRN2	www.ncbi.nlm.ni...
Null ppi.EIF2S2	View Gene Set	0.0007666	17	0.01829	150	Protein-protein-interaction for EIF2S2	www.ncbi.nlm.ni...
Null ppi.THOC4	View Gene Set	0.0007998	5	0.01867	152	Protein-protein-interaction for THOC4	www.ncbi.nlm.ni...
Null ppi.YWHAQ	View Gene Set	0.000801	104	0.01867	152	Protein-protein-interaction for YWHAQ	www.ncbi.nlm.ni...
Null ppi.GAR1	View Gene Set	0.0008038	10	0.01867	152	Protein-protein-interaction for GAR1	www.ncbi.nlm.ni...
Null ppi.ZRANB2	View Gene Set	0.0008052	11	0.01867	152	Protein-protein-interaction for ZRANB2	www.ncbi.nlm.ni...
Null ppi.PAXIP1	View Gene Set	0.000851	19	0.01961	156	Protein-protein-interaction for PAXIP1	www.ncbi.nlm.ni...
Null ppi.CPSF6	View Gene Set	0.0008786	13	0.01991	157	Protein-protein-interaction for CPSF6	www.ncbi.nlm.ni...
Null ppi.MRE11A	View Gene Set	0.0008796	16	0.01991	157	Protein-protein-interaction for MRE11A	www.ncbi.nlm.ni...
Null ppi.SMN2	View Gene Set	0.0008808	11	0.01991	157	Protein-protein-interaction for SMN2	www.ncbi.nlm.ni...
Null ppi.TXNL4A	View Gene Set	0.0009854	6	0.02186	160	Protein-protein-interaction for TXNL4A	www.ncbi.nlm.ni...
Null ppi.SRPK1	View Gene Set	0.0009796	12	0.02186	160	Protein-protein-interaction for SRPK1	www.ncbi.nlm.ni...
Null ppi.NOL12	View Gene Set	0.0009831	7	0.02186	160	Protein-protein-interaction for NOL12	www.ncbi.nlm.ni...
Null ppi.MCM8	View Gene Set	0.000996	6	0.02196	163	Protein-protein-interaction for MCM8	www.ncbi.nlm.ni...
Null ppi.PSMB7	View Gene Set	0.001004	6	0.022	164	Protein-protein-interaction for PSMB7	www.ncbi.nlm.ni...
Null ppi.KLF13	View Gene Set	0.001033	10	0.02249	165	Protein-protein-interaction for KLF13	www.ncbi.nlm.ni...
Null ppi.ZNF335	View Gene Set	0.001039	8	0.02249	165	Protein-protein-interaction for ZNF335	www.ncbi.nlm.ni...
Null ppi.RIBIN	View Gene Set	0.001048	8	0.02252	167	Protein-protein-interaction for RIBIN	www.ncbi.nlm.ni...
Null ppi.ZNF384	View Gene Set	0.001053	7	0.02252	167	Protein-protein-interaction for ZNF384	www.ncbi.nlm.ni...
Null ppi.CDC16	View Gene Set	0.001071	14	0.02278	169	Protein-protein-interaction for CDC16	www.ncbi.nlm.ni...
Null ppi.HUWE1	View Gene Set	0.0011	14	0.02303	170	Protein-protein-interaction for HUWE1	www.ncbi.nlm.ni...
Null ppi.CDCA5	View Gene Set	0.001095	6	0.02303	170	Protein-protein-interaction for CDCA5	www.ncbi.nlm.ni...
Null ppi.RFWD2	View Gene Set	0.001102	26	0.02303	170	Protein-protein-interaction for RFWD2	www.ncbi.nlm.ni...
Null ppi.CTCF	View Gene Set	0.00114	11	0.02341	173	Protein-protein-interaction for CTCF	www.ncbi.nlm.ni...
Null ppi.E2F3	View Gene Set	0.001159	8	0.02341	173	Protein-protein-interaction for E2F3	www.ncbi.nlm.ni...
Null ppi.NUP43	View Gene Set	0.001149	6	0.02341	173	Protein-protein-interaction for NUP43	www.ncbi.nlm.ni...
Null ppi.DMAP1	View Gene Set	0.001159	16	0.02341	173	Protein-protein-interaction for DMAP1	www.ncbi.nlm.ni...
Null ppi.RAD17	View Gene Set	0.001153	14	0.02341	173	Protein-protein-interaction for RAD17	www.ncbi.nlm.ni...
Null ppi.USP42	View Gene Set	0.001131	24	0.02341	173	Protein-protein-interaction for USP42	www.ncbi.nlm.ni...
Null ppi.EIF3A	View Gene Set	0.001207	13	0.02424	179	Protein-protein-interaction for EIF3A	www.ncbi.nlm.ni...
Null ppi.BRIP1	View Gene Set	0.001274	8	0.02543	180	Protein-protein-interaction for BRIP1	www.ncbi.nlm.ni...
Null ppi.ZCCHC10	View Gene Set	0.001303	6	0.02587	181	Protein-protein-interaction for ZCCHC10	www.ncbi.nlm.ni...
Null ppi.UXT	View Gene Set	0.001342	11	0.0265	182	Protein-protein-interaction for UXT	www.ncbi.nlm.ni...
Null ppi.SET	View Gene Set	0.001377	24	0.02704	183	Protein-protein-interaction for SET	www.ncbi.nlm.ni...
Null ppi.RAD54B	View Gene Set	0.001394	9	0.02723	184	Protein-protein-interaction for RAD54B	www.ncbi.nlm.ni...
Null ppi.CCT3	View Gene Set	0.001424	15	0.02767	185	Protein-protein-interaction for CCT3	www.ncbi.nlm.ni...
Null ppi.DDX39	View Gene Set	0.001434	7	0.02771	186	Protein-protein-interaction for DDX39	www.ncbi.nlm.ni...
Null ppi.CBX3	View Gene Set	0.001444	26	0.02775	187	Protein-protein-interaction for CBX3	www.ncbi.nlm.ni...
Null ppi.RBMX	View Gene Set	0.001455	15	0.0278	188	Protein-protein-interaction for RBMX	www.ncbi.nlm.ni...
Null ppi.SIP1	View Gene Set	0.001462	17	0.0278	188	Protein-protein-interaction for SIP1	www.ncbi.nlm.ni...
Null ppi.TOR1AIP2	View Gene Set	0.001521	7	0.02877	190	Protein-protein-interaction for TOR1AIP2	www.ncbi.nlm.ni...
Null ppi.SNRPA	View Gene Set	0.001557	6	0.02929	191	Protein-protein-interaction for SNRPA	www.ncbi.nlm.ni...
Null ppi.SERTAD2	View Gene Set	0.001578	6	0.02953	192	Protein-protein-interaction for SERTAD2	www.ncbi.nlm.ni...
Null ppi.G3BP1	View Gene Set	0.001638	19	0.0305	193	Protein-protein-interaction for G3BP1	www.ncbi.nlm.ni...
Null ppi.RPAP1	View Gene Set	0.001649	24	0.03055	194	Protein-protein-interaction for RPAP1	www.ncbi.nlm.ni...
Null ppi.POLD3	View Gene Set	0.001685	6	0.03077	195	Protein-protein-interaction for POLD3	www.ncbi.nlm.ni...
Null ppi.LSM5	View Gene Set	0.00167	6	0.03077	195	Protein-protein-interaction for LSM5	www.ncbi.nlm.ni...
Null ppi.SEH1L	View Gene Set	0.001686	6	0.03077	195	Protein-protein-interaction for SEH1L	www.ncbi.nlm.ni...
Null ppi.GEMIN5	View Gene Set	0.001733	14	0.03145	198	Protein-protein-interaction for GEMIN5	www.ncbi.nlm.ni...
Null ppi.USP43	View Gene Set	0.001745	9	0.03152	199	Protein-protein-interaction for USP43	www.ncbi.nlm.ni...
Null ppi.RNMTL1	View Gene Set	0.001758	8	0.03159	200	Protein-protein-interaction for RNMTL1	www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null TNF alpha/NF-kB	View Gene Set	3.685e-06	170	3.685e-05	1	CELL_MAP - TNF alpha/NF-kB gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Validated targets of C-MYC transcriptional activation	View Gene Set	3.015e-11	80	5.608e-09	1	NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set	www.pathwaycomm...
Null Signaling by Aurora kinases	View Gene Set	9.269e-09	98	8.62e-07	2	NCI_NATURE - Signaling by Aurora kinases gene set	www.pathwaycomm...
Null Aurora B signaling	View Gene Set	3.559e-08	41	2.207e-06	3	NCI_NATURE - Aurora B signaling gene set	www.pathwaycomm...
Null Polo-like kinase signaling events in the cell cycle	View Gene Set	7.896e-08	109	3.672e-06	4	NCI_NATURE - Polo-like kinase signaling events in the cell cycle gene set	www.pathwaycomm...
Null PLK1 signaling events	View Gene Set	1.338e-07	104	4.978e-06	5	NCI_NATURE - PLK1 signaling events gene set	www.pathwaycomm...
Null C-MYC pathway	View Gene Set	1.779e-06	149	5.516e-05	6	NCI_NATURE - C-MYC pathway gene set	www.pathwaycomm...
Null E2F transcription factor network	View Gene Set	0.0002054	73	0.005458	7	NCI_NATURE - E2F transcription factor network gene set	www.pathwaycomm...
Null Aurora A signaling	View Gene Set	0.0003788	64	0.008807	8	NCI_NATURE - Aurora A signaling gene set	www.pathwaycomm...
Null BARD1 signaling events	View Gene Set	0.0007629	29	0.01419	9	NCI_NATURE - BARD1 signaling events gene set	www.pathwaycomm...
Null Regulation of Telomerase	View Gene Set	0.0007354	68	0.01419	9	NCI_NATURE - Regulation of Telomerase gene set	www.pathwaycomm...
Null FOXM1 transcription factor network	View Gene Set	0.001414	42	0.02391	11	NCI_NATURE - FOXM1 transcription factor network gene set	www.pathwaycomm...
Null Signaling events mediated by HDAC Class I	View Gene Set	0.002792	114	0.04327	12	NCI_NATURE - Signaling events mediated by HDAC Class I gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Gene Expression	View Gene Set	9.558e-40	381	1.068e-36	1	REACTOME - Gene Expression gene set	www.pathwaycomm...
Null Cell Cycle Mitotic	View Gene Set	2.874e-34	312	1.605e-31	2	REACTOME - Cell Cycle Mitotic gene set	www.pathwaycomm... Mitotic&format=...
Null DNA Replication	View Gene Set	1.747e-31	200	6.506e-29	3	REACTOME - DNA Replication gene set	www.pathwaycomm...
Null Mitotic M-M/G1 phases	View Gene Set	7.172e-30	180	2.003e-27	4	REACTOME - Mitotic M-M/G1 phases gene set	www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA	View Gene Set	9.769e-28	138	2.182e-25	5	REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set	www.pathwaycomm...
Null mRNA Processing	View Gene Set	1.315e-24	158	2.449e-22	6	REACTOME - mRNA Processing gene set	www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript	View Gene Set	4.208e-24	185	6.714e-22	7	REACTOME - Formation and Maturation of mRNA Transcript gene set	www.pathwaycomm...
Null mRNA Splicing - Major Pathway	View Gene Set	2.203e-22	107	2.734e-20	8	REACTOME - mRNA Splicing - Major Pathway gene set	www.pathwaycomm...
Null mRNA Splicing	View Gene Set	2.203e-22	107	2.734e-20	8	REACTOME - mRNA Splicing gene set	www.pathwaycomm...
Null M Phase	View Gene Set	3.658e-21	90	4.086e-19	10	REACTOME - M Phase gene set	www.pathwaycomm...
Null Mitotic Prometaphase	View Gene Set	1.133e-19	86	1.151e-17	11	REACTOME - Mitotic Prometaphase gene set	www.pathwaycomm...
Null Metabolism of RNA	View Gene Set	1.443e-19	174	1.343e-17	12	REACTOME - Metabolism of RNA gene set	www.pathwaycomm...
Null Cell Cycle Checkpoints	View Gene Set	8.777e-15	124	7.542e-13	13	REACTOME - Cell Cycle Checkpoints gene set	www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm	View Gene Set	6.455e-13	55	5.15e-11	14	REACTOME - Transport of Mature Transcript to Cytoplasm gene set	www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript	View Gene Set	2.527e-12	51	1.882e-10	15	REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set	www.pathwaycomm...
Null Metabolism of mRNA	View Gene Set	4.578e-12	125	3.196e-10	16	REACTOME - Metabolism of mRNA gene set	www.pathwaycomm...
Null Regulation of mitotic cell cycle	View Gene Set	5.409e-12	95	3.356e-10	17	REACTOME - Regulation of mitotic cell cycle gene set	www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins	View Gene Set	5.409e-12	95	3.356e-10	17	REACTOME - APC/C-mediated degradation of cell cycle proteins gene set	www.pathwaycomm...
Null Translation	View Gene Set	8.477e-12	120	4.622e-10	19	REACTOME - Translation gene set	www.pathwaycomm...
Null Assembly of the pre-replicative complex	View Gene Set	9.104e-12	75	4.622e-10	19	REACTOME - Assembly of the pre-replicative complex gene set	www.pathwaycomm...
Null S Phase	View Gene Set	8.764e-12	113	4.622e-10	19	REACTOME - S Phase gene set	www.pathwaycomm...
Null Mitotic G1-G1/S phases	View Gene Set	8.274e-12	113	4.622e-10	19	REACTOME - Mitotic G1-G1/S phases gene set	www.pathwaycomm...
Null G1/S Transition	View Gene Set	9.581e-12	104	4.653e-10	23	REACTOME - G1/S Transition gene set	www.pathwaycomm...
Null Synthesis of DNA	View Gene Set	1.207e-11	102	5.62e-10	24	REACTOME - Synthesis of DNA gene set	www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins	View Gene Set	1.539e-11	86	6.875e-10	25	REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set	www.pathwaycomm...
Null DNA Replication Pre-Initiation	View Gene Set	1.937e-11	90	8.015e-10	26	REACTOME - DNA Replication Pre-Initiation gene set	www.pathwaycomm...
Null M/G1 Transition	View Gene Set	1.937e-11	90	8.015e-10	26	REACTOME - M/G1 Transition gene set	www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase	View Gene Set	8.21e-11	88	3.275e-09	28	REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set	www.pathwaycomm...
Null Regulation of DNA replication	View Gene Set	1.415e-10	81	5.449e-09	29	REACTOME - Regulation of DNA replication gene set	www.pathwaycomm...
Null Post-Elongation Processing of the Transcript	View Gene Set	1.841e-10	43	6.425e-09	30	REACTOME - Post-Elongation Processing of the Transcript gene set	www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region	View Gene Set	1.841e-10	43	6.425e-09	30	REACTOME - Cleavage of Growing Transcript in the Termination Region gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription Termination	View Gene Set	1.841e-10	43	6.425e-09	30	REACTOME - RNA Polymerase II Transcription Termination gene set	www.pathwaycomm...
Null snRNP Assembly	View Gene Set	5.765e-10	50	1.894e-08	33	REACTOME - snRNP Assembly gene set	www.pathwaycomm...
Null Metabolism of non-coding RNA	View Gene Set	5.765e-10	50	1.894e-08	33	REACTOME - Metabolism of non-coding RNA gene set	www.pathwaycomm...
Null Cap-dependent Translation Initiation	View Gene Set	6.169e-10	113	1.914e-08	35	REACTOME - Cap-dependent Translation Initiation gene set	www.pathwaycomm...
Null Eukaryotic Translation Initiation	View Gene Set	6.169e-10	113	1.914e-08	35	REACTOME - Eukaryotic Translation Initiation gene set	www.pathwaycomm...
Null HIV Infection	View Gene Set	9.621e-10	194	2.905e-08	37	REACTOME - HIV Infection gene set	www.pathwaycomm...
Null Host Interactions of HIV factors	View Gene Set	1.258e-09	132	3.698e-08	38	REACTOME - Host Interactions of HIV factors gene set	www.pathwaycomm...
Null Removal of licensing factors from origins	View Gene Set	1.3e-09	78	3.722e-08	39	REACTOME - Removal of licensing factors from origins gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA	View Gene Set	1.616e-09	34	4.402e-08	40	REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set	www.pathwaycomm...
Null mRNA 3'-end processing	View Gene Set	1.616e-09	34	4.402e-08	40	REACTOME - mRNA 3'-end processing gene set	www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1	View Gene Set	1.696e-09	77	4.509e-08	42	REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set	www.pathwaycomm...
Null G2/M Checkpoints	View Gene Set	2.43e-09	43	6.312e-08	43	REACTOME - G2/M Checkpoints gene set	www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins	View Gene Set	2.506e-09	77	6.361e-08	44	REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set	www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex	View Gene Set	4.055e-09	66	1.006e-07	45	REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set	www.pathwaycomm...
Null Switching of origins to a post-replicative state	View Gene Set	5.066e-09	76	1.204e-07	46	REACTOME - Switching of origins to a post-replicative state gene set	www.pathwaycomm...
Null Orc1 removal from chromatin	View Gene Set	5.066e-09	76	1.204e-07	46	REACTOME - Orc1 removal from chromatin gene set	www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit	View Gene Set	5.457e-09	106	1.27e-07	48	REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set	www.pathwaycomm...
Null Transcription	View Gene Set	6.405e-09	178	1.46e-07	49	REACTOME - Transcription gene set	www.pathwaycomm...
Null 3' -UTR-mediated translational regulation	View Gene Set	8.983e-09	105	1.967e-07	50	REACTOME - 3' -UTR-mediated translational regulation gene set	www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression	View Gene Set	8.983e-09	105	1.967e-07	50	REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set	www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements	View Gene Set	1.043e-08	95	2.24e-07	52	REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set	www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A	View Gene Set	1.261e-08	75	2.658e-07	53	REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set	www.pathwaycomm...
Null Influenza Infection	View Gene Set	2.052e-08	143	4.245e-07	54	REACTOME - Influenza Infection gene set	www.pathwaycomm...
Null Interactions of Rev with host cellular proteins	View Gene Set	2.9e-08	33	5.891e-07	55	REACTOME - Interactions of Rev with host cellular proteins gene set	www.pathwaycomm...
Null Activation of ATR in response to replication stress	View Gene Set	3.925e-08	37	7.829e-07	56	REACTOME - Activation of ATR in response to replication stress gene set	www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint	View Gene Set	5.096e-08	62	9.813e-07	57	REACTOME - p53-Independent G1/S DNA damage checkpoint gene set	www.pathwaycomm...
Null p53-Independent DNA Damage Response	View Gene Set	5.096e-08	62	9.813e-07	57	REACTOME - p53-Independent DNA Damage Response gene set	www.pathwaycomm...
Null Deadenylation-dependent mRNA decay	View Gene Set	7.625e-08	46	1.444e-06	59	REACTOME - Deadenylation-dependent mRNA decay gene set	www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts	View Gene Set	8.125e-08	36	1.513e-06	60	REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set	www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA	View Gene Set	9.238e-08	32	1.692e-06	61	REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set	www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A	View Gene Set	1.181e-07	61	2.086e-06	62	REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set	www.pathwaycomm...
Null Ribosomal scanning and start codon recognition	View Gene Set	1.195e-07	56	2.086e-06	62	REACTOME - Ribosomal scanning and start codon recognition gene set	www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Securin	View Gene Set	1.183e-07	72	2.086e-06	62	REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set	www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1	View Gene Set	1.267e-07	60	2.178e-06	65	REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set	www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript	View Gene Set	1.381e-07	35	2.337e-06	66	REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set	www.pathwaycomm...
Null Translation initiation complex formation	View Gene Set	1.434e-07	56	2.39e-06	67	REACTOME - Translation initiation complex formation gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription	View Gene Set	1.501e-07	101	2.466e-06	68	REACTOME - RNA Polymerase II Transcription gene set	www.pathwaycomm...
Null Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S	View Gene Set	1.722e-07	57	2.788e-06	69	REACTOME - Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S gene set	www.pathwaycomm... and subsequent ...
Null Influenza Life Cycle	View Gene Set	1.855e-07	138	2.959e-06	70	REACTOME - Influenza Life Cycle gene set	www.pathwaycomm...
Null G2/M DNA damage checkpoint	View Gene Set	1.939e-07	29	3.05e-06	71	REACTOME - G2/M DNA damage checkpoint gene set	www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA	View Gene Set	1.968e-07	33	3.054e-06	72	REACTOME - Transport of the SLBP Dependant Mature mRNA gene set	www.pathwaycomm...
Null tRNA Aminoacylation	View Gene Set	2.639e-07	42	4.037e-06	73	REACTOME - tRNA Aminoacylation gene set	www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C	View Gene Set	2.732e-07	67	4.124e-06	74	REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set	www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0)	View Gene Set	3.056e-07	63	4.551e-06	75	REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set	www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA	View Gene Set	3.354e-07	32	4.929e-06	76	REACTOME - Transport of the SLBP independent Mature mRNA gene set	www.pathwaycomm...
Null Nuclear import of Rev protein	View Gene Set	4.422e-07	30	6.414e-06	77	REACTOME - Nuclear import of Rev protein gene set	www.pathwaycomm...
Null Regulation of activated PAK-2p34 by proteasome mediated degradation	View Gene Set	4.542e-07	57	6.505e-06	78	REACTOME - Regulation of activated PAK-2p34 by proteasome mediated degradation gene set	www.pathwaycomm...
Null Autodegradation of the E3 ubiquitin ligase COP1	View Gene Set	5.218e-07	60	7.378e-06	79	REACTOME - Autodegradation of the E3 ubiquitin ligase COP1 gene set	www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1	View Gene Set	6.158e-07	59	8.492e-06	80	REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set	www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D	View Gene Set	6.158e-07	59	8.492e-06	80	REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set	www.pathwaycomm...
Null Olfactory Signaling Pathway	View Gene Set	7.477e-07	370	1.019e-05	82	REACTOME - Olfactory Signaling Pathway gene set	www.pathwaycomm...
Null Vpu mediated degradation of CD4	View Gene Set	8.379e-07	57	1.128e-05	83	REACTOME - Vpu mediated degradation of CD4 gene set	www.pathwaycomm...
Null Stabilization of p53	View Gene Set	9.749e-07	61	1.296e-05	84	REACTOME - Stabilization of p53 gene set	www.pathwaycomm...
Null Cytosolic tRNA aminoacylation	View Gene Set	9.864e-07	24	1.296e-05	84	REACTOME - Cytosolic tRNA aminoacylation gene set	www.pathwaycomm...
Null Degradation of beta-catenin by the destruction complex	View Gene Set	1.037e-06	56	1.332e-05	86	REACTOME - Degradation of beta-catenin by the destruction complex gene set	www.pathwaycomm...
Null Signaling by Wnt	View Gene Set	1.037e-06	56	1.332e-05	86	REACTOME - Signaling by Wnt gene set	www.pathwaycomm...
Null SCF(Skp2)-mediated degradation of p27/p21	View Gene Set	1.05e-06	52	1.332e-05	88	REACTOME - SCF(Skp2)-mediated degradation of p27/p21 gene set	www.pathwaycomm...
Null CDK-mediated phosphorylation and removal of Cdc6	View Gene Set	1.259e-06	58	1.58e-05	89	REACTOME - CDK-mediated phosphorylation and removal of Cdc6 gene set	www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus	View Gene Set	1.279e-06	29	1.587e-05	90	REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set	www.pathwaycomm...
Null Mitotic G2-G2/M phases	View Gene Set	1.294e-06	98	1.588e-05	91	REACTOME - Mitotic G2-G2/M phases gene set	www.pathwaycomm...
Null G1/S DNA Damage Checkpoints	View Gene Set	1.442e-06	68	1.751e-05	92	REACTOME - G1/S DNA Damage Checkpoints gene set	www.pathwaycomm...
Null mRNA Splicing - Minor Pathway	View Gene Set	1.475e-06	42	1.771e-05	93	REACTOME - mRNA Splicing - Minor Pathway gene set	www.pathwaycomm...
Null NEP/NS2 Interacts with the Cellular Export Machinery	View Gene Set	1.637e-06	29	1.945e-05	94	REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set	www.pathwaycomm...
Null Formation of a pool of free 40S subunits	View Gene Set	2.36e-06	95	2.774e-05	95	REACTOME - Formation of a pool of free 40S subunits gene set	www.pathwaycomm...
Null Regulation of ornithine decarboxylase (ODC)	View Gene Set	2.711e-06	62	3.154e-05	96	REACTOME - Regulation of ornithine decarboxylase (ODC) gene set	www.pathwaycomm...
Null G2/M Transition	View Gene Set	4.177e-06	96	4.81e-05	97	REACTOME - G2/M Transition gene set	www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus	View Gene Set	5.476e-06	31	6.242e-05	98	REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set	www.pathwaycomm...
Null Vif-mediated degradation of APOBEC3G	View Gene Set	5.677e-06	61	6.405e-05	99	REACTOME - Vif-mediated degradation of APOBEC3G gene set	www.pathwaycomm...
Null Metabolism of nucleotides	View Gene Set	5.806e-06	66	6.485e-05	100	REACTOME - Metabolism of nucleotides gene set	www.pathwaycomm...
Null Folding of actin by CCT/TriC	View Gene Set	6.705e-06	9	7.415e-05	101	REACTOME - Folding of actin by CCT/TriC gene set	www.pathwaycomm...
Null Late Phase of HIV Life Cycle	View Gene Set	1.003e-05	92	0.0001088	102	REACTOME - Late Phase of HIV Life Cycle gene set	www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry	View Gene Set	9.943e-06	62	0.0001088	102	REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set	www.pathwaycomm...
Null Association of TriC/CCT with target proteins during biosynthesis	View Gene Set	1.021e-05	9	0.0001097	104	REACTOME - Association of TriC/CCT with target proteins during biosynthesis gene set	www.pathwaycomm...
Null Recruitment of NuMA to mitotic centrosomes	View Gene Set	1.038e-05	14	0.0001104	105	REACTOME - Recruitment of NuMA to mitotic centrosomes gene set	www.pathwaycomm...
Null HIV Life Cycle	View Gene Set	1.057e-05	103	0.0001114	106	REACTOME - HIV Life Cycle gene set	www.pathwaycomm...
Null p53-Dependent G1/S DNA damage checkpoint	View Gene Set	1.126e-05	64	0.0001164	107	REACTOME - p53-Dependent G1/S DNA damage checkpoint gene set	www.pathwaycomm...
Null p53-Dependent G1 DNA Damage Response	View Gene Set	1.126e-05	64	0.0001164	107	REACTOME - p53-Dependent G1 DNA Damage Response gene set	www.pathwaycomm...
Null Formation of tubulin folding intermediates by CCT/TriC	View Gene Set	1.312e-05	8	0.0001344	109	REACTOME - Formation of tubulin folding intermediates by CCT/TriC gene set	www.pathwaycomm...
Null Phosphorylation of Emi1	View Gene Set	1.391e-05	12	0.00014	110	REACTOME - Phosphorylation of Emi1 gene set	www.pathwaycomm...
Null DNA strand elongation	View Gene Set	1.39e-05	31	0.00014	110	REACTOME - DNA strand elongation gene set	www.pathwaycomm...
Null Eukaryotic Translation Elongation	View Gene Set	1.459e-05	88	0.0001455	112	REACTOME - Eukaryotic Translation Elongation gene set	www.pathwaycomm...
Null Regulation of Apoptosis	View Gene Set	1.512e-05	66	0.0001494	113	REACTOME - Regulation of Apoptosis gene set	www.pathwaycomm...
Null Cyclin E associated events during G1/S transition	View Gene Set	1.634e-05	64	0.0001601	114	REACTOME - Cyclin E associated events during G1/S transition gene set	www.pathwaycomm...
Null Centrosome maturation	View Gene Set	1.815e-05	73	0.0001748	115	REACTOME - Centrosome maturation gene set	www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes	View Gene Set	1.815e-05	72	0.0001748	115	REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set	www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs	View Gene Set	2.402e-05	31	0.0002293	117	REACTOME - Vpr-mediated nuclear import of PICs gene set	www.pathwaycomm...
Null Chaperonin-mediated protein folding	View Gene Set	2.694e-05	16	0.000255	118	REACTOME - Chaperonin-mediated protein folding gene set	www.pathwaycomm...
Null Formation of the ternary complex and subsequently the 43S complex	View Gene Set	2.849e-05	49	0.0002674	119	REACTOME - Formation of the ternary complex and subsequently the 43S complex gene set	www.pathwaycomm... and subsequentl... the 43S complex...
Null Interactions of Vpr with host cellular proteins	View Gene Set	3.12e-05	34	0.0002905	120	REACTOME - Interactions of Vpr with host cellular proteins gene set	www.pathwaycomm...
Null Pyrimidine biosynthesis	View Gene Set	3.197e-05	6	0.0002927	121	REACTOME - Pyrimidine biosynthesis gene set	www.pathwaycomm...
Null Activation of the pre-replicative complex	View Gene Set	3.174e-05	30	0.0002927	121	REACTOME - Activation of the pre-replicative complex gene set	www.pathwaycomm...
Null Unwinding of DNA	View Gene Set	3.273e-05	11	0.0002973	123	REACTOME - Unwinding of DNA gene set	www.pathwaycomm...
Null Regulation of Glucokinase by Glucokinase Regulatory Protein	View Gene Set	3.718e-05	29	0.0003349	124	REACTOME - Regulation of Glucokinase by Glucokinase Regulatory Protein gene set	www.pathwaycomm...
Null Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding	View Gene Set	4.063e-05	15	0.0003631	125	REACTOME - Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding gene set	www.pathwaycomm...
Null Glucose transport	View Gene Set	4.283e-05	38	0.0003797	126	REACTOME - Glucose transport gene set	www.pathwaycomm...
Null Extension of Telomeres	View Gene Set	5.178e-05	28	0.0004488	127	REACTOME - Extension of Telomeres gene set	www.pathwaycomm...
Null Homologous Recombination Repair	View Gene Set	5.183e-05	22	0.0004488	127	REACTOME - Homologous Recombination Repair gene set	www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks	View Gene Set	5.183e-05	22	0.0004488	127	REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set	www.pathwaycomm...
Null Phosphorylation of the APC/C	View Gene Set	5.511e-05	26	0.0004735	130	REACTOME - Phosphorylation of the APC/C gene set	www.pathwaycomm...
Null CDC6 association with the ORC:origin complex	View Gene Set	5.566e-05	11	0.0004746	131	REACTOME - CDC6 association with the ORC:origin complex gene set	www.pathwaycomm...
Null Peptide chain elongation	View Gene Set	6.426e-05	85	0.0005438	132	REACTOME - Peptide chain elongation gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intronless pre-mRNA	View Gene Set	6.96e-05	23	0.0005802	133	REACTOME - Post-Elongation Processing of Intronless pre-mRNA gene set	www.pathwaycomm...
Null Processing of Capped Intronless Pre-mRNA	View Gene Set	6.96e-05	23	0.0005802	133	REACTOME - Processing of Capped Intronless Pre-mRNA gene set	www.pathwaycomm...
Null Hexose transport	View Gene Set	7.532e-05	40	0.0006232	135	REACTOME - Hexose transport gene set	www.pathwaycomm...
Null DNA Repair	View Gene Set	7.643e-05	108	0.0006277	136	REACTOME - DNA Repair gene set	www.pathwaycomm...
Null Prefoldin mediated transfer of substrate to CCT/TriC	View Gene Set	8.283e-05	14	0.0006719	137	REACTOME - Prefoldin mediated transfer of substrate to CCT/TriC gene set	www.pathwaycomm...
Null Mitotic Telophase /Cytokinesis	View Gene Set	8.301e-05	10	0.0006719	137	REACTOME - Mitotic Telophase /Cytokinesis gene set	www.pathwaycomm...
Null Eukaryotic Translation Termination	View Gene Set	8.516e-05	85	0.0006843	139	REACTOME - Eukaryotic Translation Termination gene set	www.pathwaycomm...
Null Chromosome Maintenance	View Gene Set	9.178e-05	69	0.0007323	140	REACTOME - Chromosome Maintenance gene set	www.pathwaycomm...
Null Metabolism of proteins	View Gene Set	0.0001285	263	0.001018	141	REACTOME - Metabolism of proteins gene set	www.pathwaycomm...
Null Purine ribonucleoside monophosphate biosynthesis	View Gene Set	0.0001385	7	0.00109	142	REACTOME - Purine ribonucleoside monophosphate biosynthesis gene set	www.pathwaycomm...
Null Double-Strand Break Repair	View Gene Set	0.0001459	27	0.001132	143	REACTOME - Double-Strand Break Repair gene set	www.pathwaycomm...
Null G1/S-Specific Transcription	View Gene Set	0.0001455	16	0.001132	143	REACTOME - G1/S-Specific Transcription gene set	www.pathwaycomm...
Null Apoptosis	View Gene Set	0.0001595	148	0.001229	145	REACTOME - Apoptosis gene set	www.pathwaycomm...
Null E2F mediated regulation of DNA replication	View Gene Set	0.0001759	28	0.001346	146	REACTOME - E2F mediated regulation of DNA replication gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER	View Gene Set	0.0003954	16	0.002984	147	REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER	View Gene Set	0.0003954	16	0.002984	147	REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set	www.pathwaycomm...
Null Deadenylation of mRNA	View Gene Set	0.0004563	22	0.003421	149	REACTOME - Deadenylation of mRNA gene set	www.pathwaycomm...
Null Viral mRNA Translation	View Gene Set	0.0004762	85	0.003546	150	REACTOME - Viral mRNA Translation gene set	www.pathwaycomm...
Null Influenza Viral RNA Transcription and Replication	View Gene Set	0.0006359	101	0.004704	151	REACTOME - Influenza Viral RNA Transcription and Replication gene set	www.pathwaycomm...
Null Polo-like kinase mediated events	View Gene Set	0.0006917	10	0.005083	152	REACTOME - Polo-like kinase mediated events gene set	www.pathwaycomm...
Null Telomere Extension By Telomerase	View Gene Set	0.0007681	6	0.005608	153	REACTOME - Telomere Extension By Telomerase gene set	www.pathwaycomm...
Null Processing of Intronless Pre-mRNAs	View Gene Set	0.0008827	14	0.006402	154	REACTOME - Processing of Intronless Pre-mRNAs gene set	www.pathwaycomm...
Null Association of licensing factors with the pre-replicative complex	View Gene Set	0.001054	15	0.007595	155	REACTOME - Association of licensing factors with the pre-replicative complex gene set	www.pathwaycomm...
Null Mitotic Metaphase/Anaphase Transition	View Gene Set	0.001102	8	0.007891	156	REACTOME - Mitotic Metaphase/Anaphase Transition gene set	www.pathwaycomm...
Null E2F-enabled inhibition of pre-replication complex formation	View Gene Set	0.001133	10	0.008058	157	REACTOME - E2F-enabled inhibition of pre-replication complex formation gene set	www.pathwaycomm...
Null Metabolism of folate and pterines	View Gene Set	0.001148	8	0.008115	158	REACTOME - Metabolism of folate and pterines gene set	www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER	View Gene Set	0.001277	15	0.008916	159	REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set	www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase	View Gene Set	0.001277	15	0.008916	159	REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set	www.pathwaycomm...
Null Activation of PUMA and translocation to mitochondria	View Gene Set	0.001523	4	0.01057	161	REACTOME - Activation of PUMA and translocation to mitochondria gene set	www.pathwaycomm...
Null Protein folding	View Gene Set	0.001568	29	0.01081	162	REACTOME - Protein folding gene set	www.pathwaycomm...
Null ATM mediated phosphorylation of repair proteins	View Gene Set	0.001677	6	0.01142	163	REACTOME - ATM mediated phosphorylation of repair proteins gene set	www.pathwaycomm...
Null ATM mediated response to DNA double-strand break	View Gene Set	0.001677	6	0.01142	163	REACTOME - ATM mediated response to DNA double-strand break gene set	www.pathwaycomm...
Null Regulation of beta-cell development	View Gene Set	0.001789	110	0.01211	165	REACTOME - Regulation of beta-cell development gene set	www.pathwaycomm...
Null mRNA Decay by 3' to 5' Exoribonuclease	View Gene Set	0.001872	11	0.0126	166	REACTOME - mRNA Decay by 3' to 5' Exoribonuclease gene set	www.pathwaycomm...
Null mRNA Decay by 5' to 3' Exoribonuclease	View Gene Set	0.002096	13	0.01402	167	REACTOME - mRNA Decay by 5' to 3' Exoribonuclease gene set	www.pathwaycomm...
Null Regulation of gene expression in beta cells	View Gene Set	0.002226	100	0.0148	168	REACTOME - Regulation of gene expression in beta cells gene set	www.pathwaycomm...
Null Metabolism of amino acids and derivatives	View Gene Set	0.002376	201	0.01571	169	REACTOME - Metabolism of amino acids and derivatives gene set	www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components	View Gene Set	0.00277	18	0.01809	170	REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set	www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex	View Gene Set	0.00277	18	0.01809	170	REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set	www.pathwaycomm...
Null Kinesins	View Gene Set	0.003161	22	0.02053	172	REACTOME - Kinesins gene set	www.pathwaycomm...
Null Mitotic Spindle Checkpoint	View Gene Set	0.003432	19	0.02216	173	REACTOME - Mitotic Spindle Checkpoint gene set	www.pathwaycomm...
Null NS1 Mediated Effects on Host Pathways	View Gene Set	0.003517	3	0.02258	174	REACTOME - NS1 Mediated Effects on Host Pathways gene set	www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis	View Gene Set	0.003576	22	0.02283	175	REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set	www.pathwaycomm...
Null Pyrimidine metabolism	View Gene Set	0.003635	23	0.02307	176	REACTOME - Pyrimidine metabolism gene set	www.pathwaycomm...
Null PKB-mediated events	View Gene Set	0.003726	28	0.02338	177	REACTOME - PKB-mediated events gene set	www.pathwaycomm...
Null mTOR signalling	View Gene Set	0.003726	28	0.02338	177	REACTOME - mTOR signalling gene set	www.pathwaycomm...
Null Cyclin B2 mediated events	View Gene Set	0.004528	5	0.02826	179	REACTOME - Cyclin B2 mediated events gene set	www.pathwaycomm...
Null Glutathione synthesis	View Gene Set	0.00469	3	0.02911	180	REACTOME - Glutathione synthesis gene set	www.pathwaycomm...
Null Activation myristolyation of BID and translocation to mitochondria	View Gene Set	0.004809	5	0.02956	181	REACTOME - Activation myristolyation of BID and translocation to mitochondria gene set	www.pathwaycomm... myristolyation ...
Null APC-Cdc20 mediated degradation of Nek2A	View Gene Set	0.004816	23	0.02956	181	REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set	www.pathwaycomm...
Null Host Interactions with Influenza Factors	View Gene Set	0.004951	5	0.03022	183	REACTOME - Host Interactions with Influenza Factors gene set	www.pathwaycomm...
Null Synthesis and interconversion of nucleotide di- and triphosphates	View Gene Set	0.005029	16	0.03053	184	REACTOME - Synthesis and interconversion of nucleotide di- and triphosphates gene set	www.pathwaycomm...
Null Mitochondrial transcription initiation	View Gene Set	0.005083	3	0.03069	185	REACTOME - Mitochondrial transcription initiation gene set	www.pathwaycomm...
Null Loss of proteins required for interphase microtubule organizationÂ from the centrosome	View Gene Set	0.005265	62	0.03145	186	REACTOME - Loss of proteins required for interphase microtubule organizationÂ from the centrosome gene set	www.pathwaycomm...
Null Loss of Nlp from mitotic centrosomes	View Gene Set	0.005265	62	0.03145	186	REACTOME - Loss of Nlp from mitotic centrosomes gene set	www.pathwaycomm...
Null Recruitment of repair and signaling proteins to double-strand breaks	View Gene Set	0.005704	8	0.03389	188	REACTOME - Recruitment of repair and signaling proteins to double-strand breaks gene set	www.pathwaycomm...
Null MRN complex relocalizes to nuclear foci	View Gene Set	0.006096	4	0.03565	189	REACTOME - MRN complex relocalizes to nuclear foci gene set	www.pathwaycomm...
Null Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks	View Gene Set	0.006096	4	0.03565	189	REACTOME - Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks gene set	www.pathwaycomm...
Null Metabolism of carbohydrates	View Gene Set	0.006094	93	0.03565	189	REACTOME - Metabolism of carbohydrates gene set	www.pathwaycomm...
Null TRAF6 mediated NF-kB activation	View Gene Set	0.006303	16	0.03667	192	REACTOME - TRAF6 mediated NF-kB activation gene set	www.pathwaycomm...
Null SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs	View Gene Set	0.006851	11	0.03961	193	REACTOME - SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs gene set	www.pathwaycomm...
Null Recycling of eIF2:GDP	View Gene Set	0.006879	8	0.03961	193	REACTOME - Recycling of eIF2:GDP gene set	www.pathwaycomm...
Null Base Excision Repair	View Gene Set	0.00775	19	0.04417	195	REACTOME - Base Excision Repair gene set	www.pathwaycomm...
Null Resolution of Abasic Sites (AP sites)	View Gene Set	0.00775	19	0.04417	195	REACTOME - Resolution of Abasic Sites (AP sites) gene set	www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	View Gene Set	0.007861	93	0.04457	197	REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set	www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null Removal of DNA patch containing abasic residue	View Gene Set	0.008111	17	0.04553	198	REACTOME - Removal of DNA patch containing abasic residue gene set	www.pathwaycomm...
Null Resolution of AP sites via the multiple-nucleotide patch replacement pathway	View Gene Set	0.008111	17	0.04553	198	REACTOME - Resolution of AP sites via the multiple-nucleotide patch replacement pathway gene set	www.pathwaycomm...
Null Pentose phosphate pathway (hexose monophosphate shunt)	View Gene Set	0.008414	6	0.04699	200	REACTOME - Pentose phosphate pathway (hexose monophosphate shunt) gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-146b-3p	View Gene Set	2.745e-06	695	0.001951	1	microRNA targets for hsa-miR-146b-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-99b	View Gene Set	6.942e-06	708	0.002468	2	microRNA targets for hsa-miR-99b from mirbase.targets	www.mirbase.org...
Null hsa-miR-566	View Gene Set	1.743e-05	787	0.00413	3	microRNA targets for hsa-miR-566 from mirbase.targets	www.mirbase.org...
Null hsa-miR-331-3p	View Gene Set	6.032e-05	712	0.0082	4	microRNA targets for hsa-miR-331-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-658	View Gene Set	8.073e-05	660	0.0082	4	microRNA targets for hsa-miR-658 from mirbase.targets	www.mirbase.org...
Null hsa-miR-671-5p	View Gene Set	7.103e-05	813	0.0082	4	microRNA targets for hsa-miR-671-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-941	View Gene Set	4.886e-05	590	0.0082	4	microRNA targets for hsa-miR-941 from mirbase.targets	www.mirbase.org...
Null hsa-miR-324-3p	View Gene Set	0.0002184	788	0.01896	8	microRNA targets for hsa-miR-324-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	0.00024	773	0.01896	8	microRNA targets for hsa-miR-486-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-383	View Gene Set	0.0003008	748	0.0196	10	microRNA targets for hsa-miR-383 from mirbase.targets	www.mirbase.org...
Null hsa-miR-662	View Gene Set	0.0003032	663	0.0196	10	microRNA targets for hsa-miR-662 from mirbase.targets	www.mirbase.org...
Null hsa-miR-378*	View Gene Set	0.0003874	686	0.02119	12	microRNA targets for hsa-miR-378* from mirbase.targets	www.mirbase.org...
Null hsa-miR-671-3p	View Gene Set	0.0003649	767	0.02119	12	microRNA targets for hsa-miR-671-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-650	View Gene Set	0.000506	693	0.0257	14	microRNA targets for hsa-miR-650 from mirbase.targets	www.mirbase.org...
Null hsa-miR-874	View Gene Set	0.0005968	722	0.02829	15	microRNA targets for hsa-miR-874 from mirbase.targets	www.mirbase.org...
Null hsa-miR-181a-2*	View Gene Set	0.0009014	742	0.04006	16	microRNA targets for hsa-miR-181a-2* from mirbase.targets	www.mirbase.org...
Null hsa-miR-484	View Gene Set	0.0009601	733	0.04016	17	microRNA targets for hsa-miR-484 from mirbase.targets	www.mirbase.org...
Null hsa-miR-323-5p	View Gene Set	0.001056	763	0.0417	18	microRNA targets for hsa-miR-323-5p from mirbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-99b	View Gene Set	1.936e-05	734	0.01493	1	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-99b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-99b	View Gene Set	1.853e-05	744	0.01493	1	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-99b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-99b	View Gene Set	1.604e-05	744	0.01493	1	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-99b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-99b	View Gene Set	0.0001017	806	0.03921	4	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-99b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-99b	View Gene Set	8.44e-05	808	0.03921	4	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-99b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-99b	View Gene Set	9.216e-05	816	0.03921	4	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-99b from miRNAtargetUnion	www.mirbase.org...

Results

AFA results for: tVPAda2DU

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: hprdBatch.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: hprdBatch.DIFFERENT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down