Results

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Go to: Gene Set Collection: KEGG
Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.BIOCARTA
Go to: Gene Set Collection: Broad.c2.CP.KEGG
Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c3.TFT
Go to: Gene Set Collection: Broad.c4.CGN
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: Broad.c5.CC
Go to: Gene Set Collection: Broad.c5.MF
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: ppi.BIND
Go to: Gene Set Collection: ppi.BioGRID
Go to: Gene Set Collection: ppi.HPRD
Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.cell-map
Go to: Gene Set Collection: pathwayCommons.humancyc
Go to: Gene Set Collection: pathwayCommons.nci-nature
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: mirbase.targets
Go to: Gene Set Collection: tarbase.targets
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: tfbsK3Z3

AFA results for: tVPAda2PC3

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 03040 View Gene Set 1.102e-18 128 2.358e-16 1 Spliceosome www.genome.jp/d...
KEGG 00970 View Gene Set 1.781e-10 41 1.906e-08 2 Aminoacyl-tRNA biosynthesis www.genome.jp/d...
KEGG 05322 View Gene Set 7.672e-08 141 5.473e-06 3 Systemic lupus erythematosus www.genome.jp/d...
KEGG 03410 View Gene Set 2.05e-06 34 0.0001097 4 Base excision repair www.genome.jp/d...
KEGG 03018 View Gene Set 3.977e-06 59 0.0001702 5 RNA degradation www.genome.jp/d...
KEGG 03030 View Gene Set 1.783e-05 36 0.0006358 6 DNA replication www.genome.jp/d...
KEGG 00240 View Gene Set 2.973e-05 99 0.0009087 7 Pyrimidine metabolism www.genome.jp/d...
KEGG 00290 View Gene Set 3.94e-05 11 0.001054 8 Valine leucine and isoleucine biosynthesis www.genome.jp/d...
KEGG 00670 View Gene Set 0.0001933 17 0.004595 9 One carbon pool by folate www.genome.jp/d...
KEGG 01100 View Gene Set 0.0004595 1120 0.009834 10 Metabolic pathways www.genome.jp/d...
KEGG 00020 View Gene Set 0.0005736 31 0.01116 11 Citrate cycle (TCA cycle) www.genome.jp/d...
KEGG 04110 View Gene Set 0.0006406 128 0.01142 12 Cell cycle www.genome.jp/d...
KEGG 03430 View Gene Set 0.0007978 23 0.01313 13 Mismatch repair www.genome.jp/d...
KEGG 00310 View Gene Set 0.001015 46 0.01551 14 Lysine degradation www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0006396 View Gene Set 9.049e-64 578 1.209e-59 1 RNA processing amigo.geneontol...
GO GO:0044428 View Gene Set 1.087e-59 1938 7.264e-56 2 nuclear part amigo.geneontol...
GO GO:0031974 View Gene Set 1.243e-55 1917 5.537e-52 3 membrane-enclosed lumen amigo.geneontol...
GO GO:0070013 View Gene Set 1.826e-55 1845 6.098e-52 4 intracellular organelle lumen amigo.geneontol...
GO GO:0043233 View Gene Set 7.278e-55 1881 1.945e-51 5 organelle lumen amigo.geneontol...
GO GO:0031981 View Gene Set 2.582e-46 1518 5.748e-43 6 nuclear lumen amigo.geneontol...
GO GO:0003723 View Gene Set 6.928e-42 732 1.322e-38 7 RNA binding amigo.geneontol...
GO GO:0008380 View Gene Set 1.362e-38 300 2.274e-35 8 RNA splicing amigo.geneontol...
GO GO:0005634 View Gene Set 3.961e-37 5198 5.88e-34 9 nucleus amigo.geneontol...
GO GO:0090304 View Gene Set 1.387e-35 3724 1.852e-32 10 nucleic acid metabolic process amigo.geneontol...
GO GO:0016071 View Gene Set 2.704e-34 381 3.284e-31 11 mRNA metabolic process amigo.geneontol...
GO GO:0034641 View Gene Set 4.104e-33 4584 4.569e-30 12 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0003676 View Gene Set 1.034e-32 2979 1.063e-29 13 nucleic acid binding amigo.geneontol...
GO GO:0006139 View Gene Set 4.404e-32 4294 4.202e-29 14 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0034660 View Gene Set 8.705e-32 236 7.753e-29 15 ncRNA metabolic process amigo.geneontol...
GO GO:0044260 View Gene Set 9.578e-32 5699 7.997e-29 16 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0006397 View Gene Set 1.15e-31 317 9.039e-29 17 mRNA processing amigo.geneontol...
GO GO:0010467 View Gene Set 1.893e-31 3806 1.405e-28 18 gene expression amigo.geneontol...
GO GO:0006807 View Gene Set 2.495e-31 4698 1.754e-28 19 nitrogen compound metabolic process amigo.geneontol...
GO GO:0030529 View Gene Set 3.169e-31 504 2.117e-28 20 ribonucleoprotein complex amigo.geneontol...
GO GO:0005654 View Gene Set 4.422e-30 939 2.813e-27 21 nucleoplasm amigo.geneontol...
GO GO:0022613 View Gene Set 4.859e-30 194 2.951e-27 22 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0005730 View Gene Set 1.086e-27 734 6.31e-25 23 nucleolus amigo.geneontol...
GO GO:0043170 View Gene Set 2.131e-27 6274 1.186e-24 24 macromolecule metabolic process amigo.geneontol...
GO GO:0044237 View Gene Set 2.497e-26 7431 1.334e-23 25 cellular metabolic process amigo.geneontol...
GO GO:0016070 View Gene Set 6.159e-26 2596 3.165e-23 26 RNA metabolic process amigo.geneontol...
GO GO:0000375 View Gene Set 1.694e-25 106 8.384e-23 27 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0034470 View Gene Set 2.053e-25 193 9.797e-23 28 ncRNA processing amigo.geneontol...
GO GO:0008152 View Gene Set 1.717e-24 8439 7.909e-22 29 metabolic process amigo.geneontol...
GO GO:0044238 View Gene Set 1.415e-23 7629 6.299e-21 30 primary metabolic process amigo.geneontol...
GO GO:0000377 View Gene Set 3.938e-23 97 1.644e-20 31 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 3.938e-23 97 1.644e-20 31 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0005681 View Gene Set 1.724e-22 135 6.98e-20 33 spliceosomal complex amigo.geneontol...
GO GO:0032991 View Gene Set 5.909e-22 3237 2.322e-19 34 macromolecular complex amigo.geneontol...
GO GO:0044451 View Gene Set 2.378e-21 600 9.076e-19 35 nucleoplasm part amigo.geneontol...
GO GO:0043227 View Gene Set 2.859e-21 8383 1.061e-18 36 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 5.642e-21 8376 2.037e-18 37 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0044446 View Gene Set 7.434e-21 5019 2.614e-18 38 intracellular organelle part amigo.geneontol...
GO GO:0006399 View Gene Set 5.009e-20 118 1.716e-17 39 tRNA metabolic process amigo.geneontol...
GO GO:0044422 View Gene Set 6.35e-20 5089 2.121e-17 40 organelle part amigo.geneontol...
GO GO:0000166 View Gene Set 1.285e-19 2257 4.188e-17 41 nucleotide binding amigo.geneontol...
GO GO:0005759 View Gene Set 1.347e-17 223 4.186e-15 42 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 1.347e-17 223 4.186e-15 42 mitochondrial lumen amigo.geneontol...
GO GO:0006412 View Gene Set 3.256e-17 412 9.887e-15 44 translation amigo.geneontol...
GO GO:0022618 View Gene Set 4.563e-17 76 1.355e-14 45 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0042254 View Gene Set 7.653e-17 130 2.223e-14 46 ribosome biogenesis amigo.geneontol...
GO GO:0005694 View Gene Set 3.416e-16 507 9.71e-14 47 chromosome amigo.geneontol...
GO GO:0005739 View Gene Set 3.586e-16 1274 9.981e-14 48 mitochondrion amigo.geneontol...
GO GO:0006259 View Gene Set 2.885e-15 592 7.865e-13 49 DNA metabolic process amigo.geneontol...
GO GO:0043228 View Gene Set 5.698e-15 2690 1.493e-12 50 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 5.698e-15 2690 1.493e-12 50 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0015931 View Gene Set 9.021e-15 118 2.318e-12 52 nucleobase nucleoside nucleotide and nucleic acid transport amigo.geneontol...
GO GO:0050657 View Gene Set 1.198e-14 102 2.911e-12 53 nucleic acid transport amigo.geneontol...
GO GO:0050658 View Gene Set 1.198e-14 102 2.911e-12 53 RNA transport amigo.geneontol...
GO GO:0051236 View Gene Set 1.198e-14 102 2.911e-12 53 establishment of RNA localization amigo.geneontol...
GO GO:0006403 View Gene Set 1.342e-14 104 3.201e-12 56 RNA localization amigo.geneontol...
GO GO:0044429 View Gene Set 1.404e-14 619 3.291e-12 57 mitochondrial part amigo.geneontol...
GO GO:0030554 View Gene Set 2.812e-14 1584 6.477e-12 58 adenyl nucleotide binding amigo.geneontol...
GO GO:0005524 View Gene Set 3.208e-14 1480 7.264e-12 59 ATP binding amigo.geneontol...
GO GO:0043226 View Gene Set 3.28e-14 9360 7.304e-12 60 organelle amigo.geneontol...
GO GO:0044249 View Gene Set 3.371e-14 4326 7.384e-12 61 cellular biosynthetic process amigo.geneontol...
GO GO:0043229 View Gene Set 4.775e-14 9346 1.029e-11 62 intracellular organelle amigo.geneontol...
GO GO:0009058 View Gene Set 1.046e-13 4436 2.218e-11 63 biosynthetic process amigo.geneontol...
GO GO:0016604 View Gene Set 1.317e-13 198 2.749e-11 64 nuclear body amigo.geneontol...
GO GO:0032559 View Gene Set 1.411e-13 1503 2.9e-11 65 adenyl ribonucleotide binding amigo.geneontol...
GO GO:0044424 View Gene Set 1.624e-13 10976 3.286e-11 66 intracellular part amigo.geneontol...
GO GO:0034645 View Gene Set 4.635e-13 3529 9.242e-11 67 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0006260 View Gene Set 5.37e-13 239 1.055e-10 68 DNA replication amigo.geneontol...
GO GO:0044427 View Gene Set 6.051e-13 420 1.172e-10 69 chromosomal part amigo.geneontol...
GO GO:0009059 View Gene Set 7.578e-13 3597 1.446e-10 70 macromolecule biosynthetic process amigo.geneontol...
GO GO:0016072 View Gene Set 8.007e-13 101 1.507e-10 71 rRNA metabolic process amigo.geneontol...
GO GO:0001883 View Gene Set 1.055e-12 1620 1.958e-10 72 purine nucleoside binding amigo.geneontol...
GO GO:0001882 View Gene Set 1.125e-12 1630 2.059e-10 73 nucleoside binding amigo.geneontol...
GO GO:0051028 View Gene Set 1.458e-12 90 2.632e-10 74 mRNA transport amigo.geneontol...
GO GO:0008033 View Gene Set 2.145e-12 78 3.821e-10 75 tRNA processing amigo.geneontol...
GO GO:0000785 View Gene Set 3.798e-12 213 6.677e-10 76 chromatin amigo.geneontol...
GO GO:0006364 View Gene Set 6.069e-12 97 1.053e-09 77 rRNA processing amigo.geneontol...
GO GO:0005622 View Gene Set 1.305e-11 11329 2.235e-09 78 intracellular amigo.geneontol...
GO GO:0008135 View Gene Set 1.499e-11 86 2.535e-09 79 translation factor activity nucleic acid binding amigo.geneontol...
GO GO:0004812 View Gene Set 3.457e-11 46 5.632e-09 80 aminoacyl-tRNA ligase activity amigo.geneontol...
GO GO:0016875 View Gene Set 3.457e-11 46 5.632e-09 80 ligase activity forming carbon-oxygen bonds amigo.geneontol...
GO GO:0016876 View Gene Set 3.457e-11 46 5.632e-09 80 ligase activity forming aminoacyl-tRNA and related compounds amigo.geneontol...
GO GO:0006418 View Gene Set 1.019e-10 45 1.602e-08 83 tRNA aminoacylation for protein translation amigo.geneontol...
GO GO:0043038 View Gene Set 1.019e-10 45 1.602e-08 83 amino acid activation amigo.geneontol...
GO GO:0043039 View Gene Set 1.019e-10 45 1.602e-08 83 tRNA aminoacylation amigo.geneontol...
GO GO:0034621 View Gene Set 1.125e-10 458 1.747e-08 86 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0017076 View Gene Set 2.552e-10 1934 3.918e-08 87 purine nucleotide binding amigo.geneontol...
GO GO:0005643 View Gene Set 4.517e-10 71 6.857e-08 88 nuclear pore amigo.geneontol...
GO GO:0006974 View Gene Set 5.411e-10 412 8.122e-08 89 response to DNA damage stimulus amigo.geneontol...
GO GO:0004386 View Gene Set 5.513e-10 144 8.183e-08 90 helicase activity amigo.geneontol...
GO GO:0032553 View Gene Set 7.101e-10 1851 1.031e-07 91 ribonucleotide binding amigo.geneontol...
GO GO:0032555 View Gene Set 7.101e-10 1851 1.031e-07 91 purine ribonucleotide binding amigo.geneontol...
GO GO:0051276 View Gene Set 9.352e-10 548 1.343e-07 93 chromosome organization amigo.geneontol...
GO GO:0003824 View Gene Set 1.521e-09 5198 2.162e-07 94 catalytic activity amigo.geneontol...
GO GO:0031967 View Gene Set 1.601e-09 672 2.252e-07 95 organelle envelope amigo.geneontol...
GO GO:0071103 View Gene Set 1.817e-09 140 2.529e-07 96 DNA conformation change amigo.geneontol...
GO GO:0003743 View Gene Set 1.854e-09 52 2.554e-07 97 translation initiation factor activity amigo.geneontol...
GO GO:0031975 View Gene Set 1.975e-09 685 2.666e-07 98 envelope amigo.geneontol...
GO GO:0046930 View Gene Set 1.959e-09 85 2.666e-07 98 pore complex amigo.geneontol...
GO GO:0008026 View Gene Set 2.114e-09 105 2.796e-07 100 ATP-dependent helicase activity amigo.geneontol...
GO GO:0070035 View Gene Set 2.114e-09 105 2.796e-07 100 purine NTP-dependent helicase activity amigo.geneontol...
GO GO:0034622 View Gene Set 2.156e-09 393 2.797e-07 102 cellular macromolecular complex assembly amigo.geneontol...
GO GO:0016607 View Gene Set 2.153e-09 116 2.797e-07 102 nuclear speck amigo.geneontol...
GO GO:0006261 View Gene Set 4.075e-09 74 5.235e-07 104 DNA-dependent DNA replication amigo.geneontol...
GO GO:0006281 View Gene Set 9.679e-09 309 1.232e-06 105 DNA repair amigo.geneontol...
GO GO:0016741 View Gene Set 1.081e-08 179 1.362e-06 106 transferase activity transferring one-carbon groups amigo.geneontol...
GO GO:0006405 View Gene Set 1.096e-08 44 1.368e-06 107 RNA export from nucleus amigo.geneontol...
GO GO:0000313 View Gene Set 1.522e-08 49 1.865e-06 108 organellar ribosome amigo.geneontol...
GO GO:0005761 View Gene Set 1.522e-08 49 1.865e-06 108 mitochondrial ribosome amigo.geneontol...
GO GO:0007049 View Gene Set 1.802e-08 1006 2.189e-06 110 cell cycle amigo.geneontol...
GO GO:0009451 View Gene Set 2.139e-08 51 2.575e-06 111 RNA modification amigo.geneontol...
GO GO:0022402 View Gene Set 2.29e-08 676 2.732e-06 112 cell cycle process amigo.geneontol...
GO GO:0000387 View Gene Set 2.319e-08 31 2.741e-06 113 spliceosomal snRNP assembly amigo.geneontol...
GO GO:0008168 View Gene Set 2.568e-08 176 3.01e-06 114 methyltransferase activity amigo.geneontol...
GO GO:0000278 View Gene Set 2.758e-08 489 3.204e-06 115 mitotic cell cycle amigo.geneontol...
GO GO:0030532 View Gene Set 2.987e-08 32 3.44e-06 116 small nuclear ribonucleoprotein complex amigo.geneontol...
GO GO:0006325 View Gene Set 5.315e-08 425 6.069e-06 117 chromatin organization amigo.geneontol...
GO GO:0044085 View Gene Set 9.293e-08 1167 1.052e-05 118 cellular component biogenesis amigo.geneontol...
GO GO:0043021 View Gene Set 1.231e-07 39 1.382e-05 119 ribonucleoprotein binding amigo.geneontol...
GO GO:0009987 View Gene Set 1.47e-07 11620 1.637e-05 120 cellular process amigo.geneontol...
GO GO:0015030 View Gene Set 1.639e-07 43 1.81e-05 121 Cajal body amigo.geneontol...
GO GO:0022403 View Gene Set 1.661e-07 522 1.819e-05 122 cell cycle phase amigo.geneontol...
GO GO:0000228 View Gene Set 1.771e-07 177 1.923e-05 123 nuclear chromosome amigo.geneontol...
GO GO:0043933 View Gene Set 1.876e-07 836 2.021e-05 124 macromolecular complex subunit organization amigo.geneontol...
GO GO:0043234 View Gene Set 2.2e-07 2680 2.352e-05 125 protein complex amigo.geneontol...
GO GO:0006520 View Gene Set 2.371e-07 231 2.514e-05 126 cellular amino acid metabolic process amigo.geneontol...
GO GO:0006401 View Gene Set 2.527e-07 74 2.658e-05 127 RNA catabolic process amigo.geneontol...
GO GO:0003677 View Gene Set 3.102e-07 2028 3.238e-05 128 DNA binding amigo.geneontol...
GO GO:0000245 View Gene Set 4.612e-07 34 4.776e-05 129 spliceosome assembly amigo.geneontol...
GO GO:0010605 View Gene Set 6.302e-07 827 6.477e-05 130 negative regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0000775 View Gene Set 7.096e-07 146 7.237e-05 131 chromosome centromeric region amigo.geneontol...
GO GO:0044267 View Gene Set 7.718e-07 2465 7.811e-05 132 cellular protein metabolic process amigo.geneontol...
GO GO:0000792 View Gene Set 8.039e-07 52 8.075e-05 133 heterochromatin amigo.geneontol...
GO GO:0040029 View Gene Set 8.65e-07 95 8.624e-05 134 regulation of gene expression epigenetic amigo.geneontol...
GO GO:0006333 View Gene Set 8.78e-07 129 8.689e-05 135 chromatin assembly or disassembly amigo.geneontol...
GO GO:0004518 View Gene Set 9.053e-07 161 8.893e-05 136 nuclease activity amigo.geneontol...
GO GO:0006413 View Gene Set 9.581e-07 62 9.343e-05 137 translational initiation amigo.geneontol...
GO GO:0032392 View Gene Set 1.022e-06 19 9.819e-05 138 DNA geometric change amigo.geneontol...
GO GO:0032508 View Gene Set 1.022e-06 19 9.819e-05 138 DNA duplex unwinding amigo.geneontol...
GO GO:0000279 View Gene Set 1.153e-06 406 0.00011 140 M phase amigo.geneontol...
GO GO:0044454 View Gene Set 1.218e-06 139 0.0001154 141 nuclear chromosome part amigo.geneontol...
GO GO:0005840 View Gene Set 1.237e-06 198 0.0001164 142 ribosome amigo.geneontol...
GO GO:0034728 View Gene Set 1.273e-06 93 0.000119 143 nucleosome organization amigo.geneontol...
GO GO:0051168 View Gene Set 1.303e-06 71 0.0001209 144 nuclear export amigo.geneontol...
GO GO:0065003 View Gene Set 1.375e-06 763 0.0001267 145 macromolecular complex assembly amigo.geneontol...
GO GO:0006270 View Gene Set 1.801e-06 26 0.0001648 146 DNA-dependent DNA replication initiation amigo.geneontol...
GO GO:0003678 View Gene Set 2.011e-06 44 0.0001828 147 DNA helicase activity amigo.geneontol...
GO GO:0006400 View Gene Set 2.035e-06 18 0.0001837 148 tRNA modification amigo.geneontol...
GO GO:0005740 View Gene Set 2.57e-06 444 0.0002304 149 mitochondrial envelope amigo.geneontol...
GO GO:0044452 View Gene Set 2.661e-06 28 0.000237 150 nucleolar part amigo.geneontol...
GO GO:0060255 View Gene Set 2.974e-06 3411 0.0002631 151 regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0006406 View Gene Set 3.199e-06 34 0.0002812 152 mRNA export from nucleus amigo.geneontol...
GO GO:0048285 View Gene Set 3.621e-06 286 0.0003162 153 organelle fission amigo.geneontol...
GO GO:0043566 View Gene Set 3.784e-06 149 0.0003282 154 structure-specific DNA binding amigo.geneontol...
GO GO:0009892 View Gene Set 4.16e-06 889 0.0003586 155 negative regulation of metabolic process amigo.geneontol...
GO GO:0000793 View Gene Set 4.618e-06 136 0.0003955 156 condensed chromosome amigo.geneontol...
GO GO:0000087 View Gene Set 4.737e-06 286 0.0004006 157 M phase of mitotic cell cycle amigo.geneontol...
GO GO:0003697 View Gene Set 4.725e-06 58 0.0004006 157 single-stranded DNA binding amigo.geneontol...
GO GO:0006323 View Gene Set 4.919e-06 119 0.0004133 159 DNA packaging amigo.geneontol...
GO GO:0000790 View Gene Set 5.145e-06 63 0.0004296 160 nuclear chromatin amigo.geneontol...
GO GO:0009982 View Gene Set 5.372e-06 14 0.0004457 161 pseudouridine synthase activity amigo.geneontol...
GO GO:0004004 View Gene Set 5.721e-06 19 0.0004718 162 ATP-dependent RNA helicase activity amigo.geneontol...
GO GO:0016887 View Gene Set 6.342e-06 339 0.0005198 163 ATPase activity amigo.geneontol...
GO GO:0000280 View Gene Set 6.514e-06 276 0.0005275 164 nuclear division amigo.geneontol...
GO GO:0007067 View Gene Set 6.514e-06 276 0.0005275 164 mitosis amigo.geneontol...
GO GO:0005743 View Gene Set 6.765e-06 305 0.0005445 166 mitochondrial inner membrane amigo.geneontol...
GO GO:0006996 View Gene Set 6.917e-06 1501 0.0005447 167 organelle organization amigo.geneontol...
GO GO:0009295 View Gene Set 6.9e-06 31 0.0005447 167 nucleoid amigo.geneontol...
GO GO:0042645 View Gene Set 6.9e-06 31 0.0005447 167 mitochondrial nucleoid amigo.geneontol...
GO GO:0000049 View Gene Set 6.931e-06 24 0.0005447 167 tRNA binding amigo.geneontol...
GO GO:0031497 View Gene Set 7.891e-06 87 0.0006165 171 chromatin assembly amigo.geneontol...
GO GO:0008150 View Gene Set 8.134e-06 14318 0.0006318 172 biological_process amigo.geneontol...
GO GO:0006383 View Gene Set 8.995e-06 32 0.0006947 173 transcription from RNA polymerase III promoter amigo.geneontol...
GO GO:0044106 View Gene Set 9.657e-06 314 0.0007414 174 cellular amine metabolic process amigo.geneontol...
GO GO:0019866 View Gene Set 9.723e-06 334 0.0007423 175 organelle inner membrane amigo.geneontol...
GO GO:0008186 View Gene Set 1.076e-05 20 0.0008165 176 RNA-dependent ATPase activity amigo.geneontol...
GO GO:0005488 View Gene Set 1.247e-05 12334 0.0009409 177 binding amigo.geneontol...
GO GO:0044265 View Gene Set 1.395e-05 479 0.001047 178 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0090329 View Gene Set 1.406e-05 18 0.001049 179 regulation of DNA-dependent DNA replication amigo.geneontol...
GO GO:0031966 View Gene Set 1.511e-05 420 0.001122 180 mitochondrial membrane amigo.geneontol...
GO GO:0006334 View Gene Set 1.58e-05 83 0.001166 181 nucleosome assembly amigo.geneontol...
GO GO:0004540 View Gene Set 1.619e-05 66 0.001189 182 ribonuclease activity amigo.geneontol...
GO GO:0004527 View Gene Set 1.734e-05 57 0.001266 183 exonuclease activity amigo.geneontol...
GO GO:0051172 View Gene Set 1.859e-05 580 0.00135 184 negative regulation of nitrogen compound metabolic process amigo.geneontol...
GO GO:0006366 View Gene Set 1.877e-05 919 0.001356 185 transcription from RNA polymerase II promoter amigo.geneontol...
GO GO:0010629 View Gene Set 1.898e-05 573 0.001363 186 negative regulation of gene expression amigo.geneontol...
GO GO:0045934 View Gene Set 1.946e-05 574 0.00139 187 negative regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0065004 View Gene Set 2.234e-05 99 0.001588 188 protein-DNA complex assembly amigo.geneontol...
GO GO:0006268 View Gene Set 2.345e-05 12 0.001658 189 DNA unwinding involved in replication amigo.geneontol...
GO GO:0000786 View Gene Set 2.515e-05 65 0.001768 190 nucleosome amigo.geneontol...
GO GO:0016568 View Gene Set 2.615e-05 324 0.001829 191 chromatin modification amigo.geneontol...
GO GO:0010608 View Gene Set 2.831e-05 247 0.00195 192 posttranscriptional regulation of gene expression amigo.geneontol...
GO GO:0016569 View Gene Set 2.811e-05 165 0.00195 192 covalent chromatin modification amigo.geneontol...
GO GO:0016874 View Gene Set 2.829e-05 436 0.00195 192 ligase activity amigo.geneontol...
GO GO:0000776 View Gene Set 2.962e-05 92 0.002019 195 kinetochore amigo.geneontol...
GO GO:0031080 View Gene Set 2.957e-05 10 0.002019 195 Nup107-160 complex amigo.geneontol...
GO GO:0006376 View Gene Set 3.056e-05 15 0.002072 197 mRNA splice site selection amigo.geneontol...
GO GO:0000315 View Gene Set 3.179e-05 18 0.002123 198 organellar large ribosomal subunit amigo.geneontol...
GO GO:0005762 View Gene Set 3.179e-05 18 0.002123 198 mitochondrial large ribosomal subunit amigo.geneontol...
GO GO:0008408 View Gene Set 3.15e-05 27 0.002123 198 3'-5' exonuclease activity amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr9q34 View Gene Set 5.929e-08 204 1.933e-05 1 Genes in cytogenetic band chr9q34 www.broad.mit.e...
Broad chr17q25 View Gene Set 1.497e-06 172 0.0002441 2 Genes in cytogenetic band chr17q25 www.broad.mit.e...
Broad chr6p22 View Gene Set 1.353e-05 137 0.001103 3 Genes in cytogenetic band chr6p22 www.broad.mit.e...
Broad chr16p13 View Gene Set 1.076e-05 254 0.001103 3 Genes in cytogenetic band chr16p13 www.broad.mit.e...
Broad chr19p13 View Gene Set 3.078e-05 514 0.002007 5 Genes in cytogenetic band chr19p13 www.broad.mit.e...
Broad chr22q13 View Gene Set 0.000112 179 0.006084 6 Genes in cytogenetic band chr22q13 www.broad.mit.e...
Broad chr11q12 View Gene Set 0.0002975 179 0.01385 7 Genes in cytogenetic band chr11q12 www.broad.mit.e...
Broad chr1p36 View Gene Set 0.000873 385 0.03558 8 Genes in cytogenetic band chr1p36 www.broad.mit.e...
Broad chr16q24 View Gene Set 0.001057 88 0.0383 9 Genes in cytogenetic band chr16q24 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 2.975e-67 920 7.116e-64 1 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 9.682e-54 276 1.158e-50 2 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 1.626e-49 1582 1.297e-46 3 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 3.913e-49 577 2.34e-46 4 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 4.26e-48 832 2.038e-45 5 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 7.967e-45 744 3.176e-42 6 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 2.039e-34 331 6.966e-32 7 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 3.111e-30 757 9.303e-28 8 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 7.89e-27 124 2.097e-24 9 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 1.028e-23 1253 2.459e-21 10 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 3.3e-23 1180 7.175e-21 11 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 1.368e-22 639 2.726e-20 12 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN View Gene Set 3.188e-22 308 5.867e-20 13 Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 3.775e-22 154 6.45e-20 14 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 8.921e-22 294 1.423e-19 15 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 1.556e-20 711 2.327e-18 16 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 3.778e-17 485 5.316e-15 17 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 5.331e-17 415 7.084e-15 18 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 5.739e-17 436 7.226e-15 19 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 1.736e-15 410 2.076e-13 20 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 1.547e-14 1045 1.762e-12 21 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 2.215e-14 359 2.408e-12 22 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 6.993e-14 68 6.773e-12 23 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 6.816e-14 127 6.773e-12 23 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 7.079e-14 433 6.773e-12 23 Mitochondrial genes www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 1.153e-13 243 1.061e-11 26 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 1.983e-13 303 1.757e-11 27 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP View Gene Set 2.765e-13 45 2.362e-11 28 Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone. www.broad.mit.e...
Broad PENG_GLUTAMINE_DEPRIVATION_DN View Gene Set 7.564e-13 84 6.239e-11 29 Genes down-regulated in BJAB cells (B-lymphoma) after glutamine [PubChem=738] deprivation. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 8.499e-13 420 6.777e-11 30 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 1.474e-12 80 1.137e-10 31 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 3.739e-12 46 2.795e-10 32 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 6.25e-12 435 4.531e-10 33 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN View Gene Set 8.277e-12 136 5.823e-10 34 Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad SCHLOSSER_MYC_AND_SERUM_RESPONSE_SYNERGY View Gene Set 1.308e-11 31 8.937e-10 35 Cluster 3: genes strongly up-regulated in B493-6 cells (B lymphocytes) by a combination of MYC [Gene ID=4609] and serum but not by each of them alone. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 2.766e-11 62 1.838e-09 36 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 3.978e-11 1375 2.572e-09 37 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 4.676e-11 164 2.944e-09 38 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN View Gene Set 5.63e-11 43 3.453e-09 39 Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757]. www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 1.171e-10 213 7.003e-09 40 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14 View Gene Set 1.204e-10 131 7.024e-09 41 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 1.548e-10 92 8.816e-09 42 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 2.073e-10 317 1.153e-08 43 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad PENG_RAPAMYCIN_RESPONSE_DN View Gene Set 4.586e-10 69 2.493e-08 44 Genes down-regulated in BJUB cells (B-lymphoma) in response to rapamycin [PubChem=6610346] treatment. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 1.175e-09 537 6.246e-08 45 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX View Gene Set 1.384e-09 229 7.199e-08 46 Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 2.06e-09 408 1.048e-07 47 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 3.27e-09 367 1.629e-07 48 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP View Gene Set 3.846e-09 92 1.878e-07 49 Genes correlated with the early tumor onset in the Emu-myc transgenic mouse lymphoma model. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 8.272e-09 469 3.957e-07 50 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION View Gene Set 1.143e-08 71 5.362e-07 51 Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts). www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 1.85e-08 178 8.51e-07 52 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES View Gene Set 2.328e-08 128 1.013e-06 53 Genes involved in DNA replication compiled manually by the authors. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 2.316e-08 187 1.013e-06 53 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 2.311e-08 332 1.013e-06 53 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN View Gene Set 2.469e-08 148 1.054e-06 56 Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 3.304e-08 143 1.386e-06 57 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 4.332e-08 630 1.787e-06 58 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP View Gene Set 4.951e-08 144 2.007e-06 59 Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_16P13_AMPLICON View Gene Set 5.731e-08 115 2.247e-06 60 Genes within amplicon 16p13 identified in a study of 191 breast tumor samples. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 5.688e-08 158 2.247e-06 60 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL View Gene Set 7.587e-08 109 2.927e-06 62 Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 1.094e-07 96 4.152e-06 63 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad DANG_REGULATED_BY_MYC_UP View Gene Set 1.968e-07 65 7.356e-06 64 Genes up-regulated by MYC [Gene ID=4609] according to the MYC Target Gene Database. www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN View Gene Set 2.096e-07 60 7.715e-06 65 Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701]. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 2.163e-07 589 7.839e-06 66 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 4.906e-07 92 1.752e-05 67 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN View Gene Set 5.057e-07 160 1.779e-05 68 Genes down-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2 STK6 and ZNF217 [Gene ID=4605 6790 7764] www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 5.657e-07 138 1.961e-05 69 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN View Gene Set 5.964e-07 49 2.038e-05 70 Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector. www.broad.mit.e...
Broad IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR View Gene Set 6.537e-07 100 2.202e-05 71 Genes in the expression cluster 'Early Progenitors Shared': up-regulated in hematopoietic progenitors from adult bone marrow and from fetal liver. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 6.781e-07 241 2.253e-05 72 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 9.508e-07 289 3.116e-05 73 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN View Gene Set 1.114e-06 297 3.559e-05 74 Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown. www.broad.mit.e...
Broad HESS_TARGETS_OF_HOXA9_AND_MEIS1_UP View Gene Set 1.116e-06 59 3.559e-05 74 Genes up-regulated in hematopoietic precursor cells conditionally expressing HOXA9 and MEIS1 [Gene ID=3205 4211]. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC View Gene Set 1.284e-06 101 3.989e-05 76 Cluster 2: genes up-regulated in B493-6 cells (B lymphocytes) by serum alone or in combination with MYC [Gene ID=4609] but not by MYC alone. www.broad.mit.e...
Broad SHEPARD_CRUSH_AND_BURN_MUTANT_UP View Gene Set 1.276e-06 135 3.989e-05 76 Human orthologs of genes up-regulated in the crb ('crash and burn') zebrafish mutant that represents a loss-of-function mutation in BMYB [Gene ID=4605]. www.broad.mit.e...
Broad KIM_GASTRIC_CANCER_CHEMOSENSITIVITY View Gene Set 1.352e-06 97 4.148e-05 78 Genes up-regulated in gastric cancer patients refractory to chemotherapy treatment with 5-fluorouracil and cisplatin [PubChem=3385 2767] compared to the sensitive state. www.broad.mit.e...
Broad REN_BOUND_BY_E2F View Gene Set 1.405e-06 47 4.254e-05 79 Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_UP View Gene Set 2.648e-06 64 7.917e-05 80 Genes up-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 2.796e-06 203 8.255e-05 81 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_DN View Gene Set 4.082e-06 25 0.0001191 82 Genes down-regulated in EVSA-T cells (breast cancer) treated THC (delta-9-tetrahydrocannabinol) [PubChem=6610319]. www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN View Gene Set 4.493e-06 76 0.0001295 83 Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298]. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP View Gene Set 4.984e-06 53 0.0001419 84 The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele. www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK View Gene Set 5.219e-06 100 0.0001469 85 Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 6.968e-06 768 0.0001938 86 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad FAELT_B_CLL_WITH_VH3_21_UP View Gene Set 7.934e-06 44 0.0002157 87 Genes changed in samples from B-CLL (B-cell chronic lymphocytic leukemia) using the immunoglobulin heavy chain VH3-21 gene. www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN View Gene Set 7.855e-06 139 0.0002157 87 Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi. www.broad.mit.e...
Broad LIN_APC_TARGETS View Gene Set 8.158e-06 52 0.0002193 89 Genes up-regulated by forced expression of APC [Gene ID=324] in the APC-deficient SW480 cell line (colon cancer). www.broad.mit.e...
Broad BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP View Gene Set 8.899e-06 190 0.0002365 90 Genes up-regulated in medullary breast cancer (MBC) relative to ductal breast cancer (DBD). www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 9.959e-06 201 0.0002618 91 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN View Gene Set 1.018e-05 42 0.0002646 92 Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037]. www.broad.mit.e...
Broad SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP View Gene Set 1.03e-05 45 0.000265 93 Top 50 up-regulated markers distinguishing diffuse large B-cell lymphoma (DLBCL) from follicular lymphoma (FL) samples. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 1.074e-05 301 0.0002733 94 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 1.411e-05 184 0.0003552 95 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 1.476e-05 1353 0.0003665 96 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN View Gene Set 1.486e-05 52 0.0003665 96 Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 1.826e-05 351 0.0004426 98 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad PENG_LEUCINE_DEPRIVATION_DN View Gene Set 1.832e-05 50 0.0004426 98 Genes down-regulated in BJAB cells (B-lymphoma) after leucine [PubChem=857] deprivation. www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN View Gene Set 1.863e-05 51 0.0004457 100 Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC). www.broad.mit.e...
Broad ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN View Gene Set 1.907e-05 346 0.0004517 101 Genes down-regulated in normal tissue adjacent to liver tumor compared to the normal liver samples. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 2.054e-05 165 0.0004818 102 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS View Gene Set 2.133e-05 855 0.000486 103 Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi. www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP View Gene Set 2.113e-05 52 0.000486 103 Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 2.117e-05 265 0.000486 103 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 2.635e-05 152 0.0005945 106 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2 View Gene Set 2.98e-05 111 0.0006663 107 'Cancer prone response profile' (CPRP): genes common to estradiol and bisphenol A [PubChem=5757 6623] response of epithelial cell cultures from patients at high risk of breast cancer. www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA View Gene Set 3.32e-05 46 0.0007353 108 'Cancer prone response profile' (CPRP): genes changed in response to bisphenol A [PubChem=6623] in epithelial cell cultures from patients at high risk of breast cancer. www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 3.405e-05 329 0.0007472 109 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_SUBGROUPS View Gene Set 3.684e-05 28 0.000801 110 Top genes up-regulated in MM4 vs MM1 subgroup of multiple myeloma samples. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN View Gene Set 4.173e-05 61 0.0008993 111 Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad FERNANDEZ_BOUND_BY_MYC View Gene Set 4.344e-05 176 0.0009278 112 Genes identified by ChIP within the high-affinity group of MYC [Gene ID=4609] targets. www.broad.mit.e...
Broad WONG_PROTEASOME_GENE_MODULE View Gene Set 4.731e-05 46 0.001002 113 Genes that comprise the proteasome gene module www.broad.mit.e...
Broad XU_CREBBP_TARGETS_UP View Gene Set 5.265e-05 24 0.001105 114 Genes up-regulated in pro-B lymphocytes after knockout of CREBBP [Gene ID=1387]. www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER View Gene Set 5.457e-05 167 0.001135 115 Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines. www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_UP View Gene Set 5.677e-05 168 0.001168 116 Genes with copy number gains in primary neuroblastoma tumors. www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP View Gene Set 5.712e-05 93 0.001168 116 Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte. www.broad.mit.e...
Broad MENSSEN_MYC_TARGETS View Gene Set 6.298e-05 16 0.001277 118 Genes up-regulated by adenoviral expression of c-MYC [Gene ID=4609] in HUVEC cells (umbilical vein endothelium). www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_DN View Gene Set 7.11e-05 250 0.001429 119 Genes down-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES View Gene Set 7.351e-05 205 0.001465 120 Genes involved in DNA repair compiled manually by the authors. www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN View Gene Set 7.45e-05 42 0.001473 121 Genes down-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI [Gene ID=23495]. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 7.798e-05 86 0.001527 122 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad BHATTACHARYA_EMBRYONIC_STEM_CELL View Gene Set 7.885e-05 76 0.001527 122 The 'stemnes' signature: genes up-regulated and common to 6 human embryonic stem cell lines tested. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S2 View Gene Set 7.915e-05 114 0.001527 122 Genes from 'subtype S2' signature of hepatocellular carcinoma (HCC): proliferation MYC and AKT1 [Gene ID=4609 207] activation. www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP View Gene Set 8.845e-05 57 0.001693 125 DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not. www.broad.mit.e...
Broad MULLIGHAN_NPM1_MUTATED_SIGNATURE_2_DN View Gene Set 9.258e-05 72 0.001758 126 The 'NPM1-mutated signature 2': genes down-regulated in pediatric AML (acute myeloid leukemia) samples with mutated NPM1 [Gene ID=4869] compared to the AML cases with the intact gene and without recurring cytogenetic anomalities or M7 phenotype. www.broad.mit.e...
Broad DOUGLAS_BMI1_TARGETS_UP View Gene Set 0.0001009 497 0.0019 127 Genes up-regulated in A4573 cells (Ewing's sarcoma ESFT) after knockdown of BMI1 [Gene ID=648] by RNAi. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 0.0001094 180 0.002045 128 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS View Gene Set 0.0001142 19 0.002117 129 RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1. www.broad.mit.e...
Broad CHAUHAN_RESPONSE_TO_METHOXYESTRADIOL_UP View Gene Set 0.0001222 47 0.002248 130 Genes up-regulated by 2-methoxyestradiol (2ME2) [PubChem=1573] in the MM.1S cell line (multiple myeloma) sensitive to dexamethasone [PubChem=5743]. www.broad.mit.e...
Broad MUNSHI_MULTIPLE_MYELOMA_DN View Gene Set 0.000131 9 0.002392 131 Genes down-regulated in multiple myeloma (MM) compared to normal plasma cells from the patient's identical twin. www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G5 View Gene Set 0.0001406 10 0.002535 132 Cluster G5: genes up-regulated in NHEK cells (normal keratinocyte) at 3 h and 24 h time points after UV-B irradiation. www.broad.mit.e...
Broad LY_AGING_OLD_DN View Gene Set 0.000141 47 0.002535 132 Genes up-regulated in fibroblasts from old individuals compared to those from young donors. www.broad.mit.e...
Broad LEE_METASTASIS_AND_RNA_PROCESSING_UP View Gene Set 0.0001421 15 0.002536 134 Components of RNA post-transcriptional modification machinery up-regulated in MDA-MB-435 cells (breast cancer) whose metastatic potential has been reduced by expression of NME1 [Gene ID=4830]. www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP View Gene Set 0.0001464 36 0.002575 135 Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors. www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_DN View Gene Set 0.0001464 36 0.002575 135 Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors. www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION View Gene Set 0.0001546 154 0.0027 137 Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population. www.broad.mit.e...
Broad XU_RESPONSE_TO_TRETINOIN_AND_NSC682994_DN View Gene Set 0.0001565 14 0.002712 138 Genes down-regulated synergistically in NB4 cells (acute promyelocytic leukemia APL) by tretinoin and NSC682994 [PubChem=5538 388304]. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 0.0001796 53 0.003091 139 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad BENPORATH_ES_CORE_NINE_CORRELATED View Gene Set 0.000181 100 0.003092 140 Breast cancer compendium: 100 transcription regulators showing most correlated expression with the 9 'embryonic stem cell' transcription factors that are preferentially and coordinately overexpressed in the high-grade ER-negative breast cancer tumors. www.broad.mit.e...
Broad PRAMOONJAGO_SOX4_TARGETS_DN View Gene Set 0.0002151 51 0.003649 141 Genes down-regulated in ACC3 cells (adenoid cystic carcinoma) after knockdown of SOX4 [Gene ID=6659] by RNAi. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 0.0002186 859 0.003677 142 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_16Q24_AMPLICON View Gene Set 0.0002198 48 0.003677 142 Genes within amplicon 16q24 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad MCBRYAN_PUBERTAL_BREAST_5_6WK_DN View Gene Set 0.0002218 123 0.003684 144 Genes down-regulated during pubertal mammary gland development between week 5 and 6. www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP View Gene Set 0.0002358 135 0.00389 145 Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360]. www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN View Gene Set 0.0002402 121 0.003921 146 Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495]. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 0.000241 208 0.003921 146 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE View Gene Set 0.0002615 54 0.004227 148 Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_11 View Gene Set 0.0002834 93 0.00455 149 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11. www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_BRCA1_UP View Gene Set 0.0003065 32 0.004888 150 Up-regulated genes from the optimal set of 100 markers discriminating ER(-) breast cancer tumors by BRCA1 [Gene ID=672] mutation status. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 0.0003374 138 0.005345 151 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad NAKAMURA_CANCER_MICROENVIRONMENT_DN View Gene Set 0.0003489 45 0.005491 152 Genes down-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro. www.broad.mit.e...
Broad SARRIO_EPITHELIAL_MESENCHYMAL_TRANSITION_UP View Gene Set 0.0003745 16 0.005823 153 Genes up-regulated in MCF10A cells (breast cancer) grown at low (mesenchymal phenotype) compared to those grown at high (epithelial basal-like phenotype) confluency. www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN View Gene Set 0.0003749 15 0.005823 153 Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP View Gene Set 0.0003795 129 0.005857 155 Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP View Gene Set 0.0004429 192 0.006792 156 Genes enriched in embryonic neural and hematopoietic stem cells. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 0.0004803 212 0.007318 157 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_480_MCF10A View Gene Set 0.0004987 38 0.00755 158 Genes whose expression peaked at 480 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad CHANG_CORE_SERUM_RESPONSE_UP View Gene Set 0.0005487 66 0.008255 159 Up-regulated genes in the canonical gene expression signature of the fibroblast core serum response (CSR) defined by the Stanford group. www.broad.mit.e...
Broad CHNG_MULTIPLE_MYELOMA_HYPERPLOID_UP View Gene Set 0.0005561 51 0.008262 160 Protein biosynthesis transport or catabolism genes up-regulated in hyperploid multiple myeloma (MM) compared to the non-hyperploid MM samples. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 0.0005558 1641 0.008262 160 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad ELVIDGE_HIF1A_AND_HIF2A_TARGETS_UP View Gene Set 0.0005705 38 0.008424 162 Genes up-regulated in MCF7 cells (breast cancer) after knockdown of both HIF1A and HIF2A [Gene ID=3091 2034] by RNAi. www.broad.mit.e...
Broad HEIDENBLAD_AMPLICON_8Q24_UP View Gene Set 0.0005826 29 0.00855 163 Up-regulated genes whose expression is associated with amplification of the 8q24 chromosome region in pancreatic cancer cell lines. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 0.0006565 475 0.009575 164 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 0.0006657 283 0.009651 165 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR View Gene Set 0.0007822 31 0.01127 166 Genes in the expression cluster 'Intermediate Progenitors Shared': up-regulated in hematopoietic intemediate progenitor cells from adult bone marrow and fetal liver. www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_GREEN_DN View Gene Set 0.0008009 24 0.01144 167 Genes from the green module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphorylcholine (oxPAPC). www.broad.mit.e...
Broad KALMA_E2F1_TARGETS View Gene Set 0.0008031 11 0.01144 167 DNA replication genes up-regulated in a Rat-1a cell line (fibroblast) by expression of E2F1 [Gene ID=1869]. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 0.0008654 290 0.01225 169 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_BY_DMOG_DN View Gene Set 0.0008987 56 0.01265 170 Genes down-regulated in MCF7 cells (breast cancer) treated with hypoxia mimetic DMOG [PubChem=3080614]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_4 View Gene Set 0.0009517 15 0.01331 171 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 4. www.broad.mit.e...
Broad LY_AGING_PREMATURE_DN View Gene Set 0.001059 24 0.01473 172 Genes down-regulated in fibroblasts from patients with Hutchinson-Gilford progeria (premature aging) compared to those from normal young individuals. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP View Gene Set 0.001102 388 0.01523 173 Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad WAKASUGI_HAVE_ZNF143_BINDING_SITES View Gene Set 0.001182 55 0.01622 174 DNA repair genes whose promoters contain putative ZNF143 [Gene ID=7702] binding sites. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 0.001187 599 0.01622 174 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad BASSO_B_LYMPHOCYTE_NETWORK View Gene Set 0.001238 136 0.01682 176 Genes which comprise the top 1% of highly interconnected genes (major hubs) that account for most of gene interactions in the reconstructed regulatory networks from expression profiles in B lymphocytes. www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER View Gene Set 0.00132 60 0.01784 177 Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 0.001337 279 0.01797 178 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad BARRIER_CANCER_RELAPSE_NORMAL_SAMPLE_DN View Gene Set 0.001383 30 0.01848 179 Down-regulated genes in non-neoplastic mucosa samples from colon cancer patients who developed recurrence of the disease. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 0.00153 681 0.02034 180 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad MOOTHA_TCA View Gene Set 0.001667 15 0.02203 181 Tricarboxylic acid related genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad GRATIAS_RETINOBLASTOMA_16Q24 View Gene Set 0.00184 17 0.02419 182 Genes from 16q24 region up-regulated in retinoblastoma tumors with 16q24 LOH (loss of heterozygocity) compared to those without the LOH. www.broad.mit.e...
Broad FLECHNER_PBL_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 0.001918 147 0.02508 183 Genes upreglated in peripheral blood lymphocytes (PBL) from patients with well functioning kidneys more than 1-year post transplant compared to those from normal living kidney donors. www.broad.mit.e...
Broad LIAO_METASTASIS View Gene Set 0.001948 513 0.02533 184 Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC. www.broad.mit.e...
Broad MARZEC_IL2_SIGNALING_UP View Gene Set 0.002029 107 0.02623 185 Genes up-regulated by IL2 [Gene ID=3558] in cells derived from CD4+ [Gene ID=920] cutaneous T-cell lymphoma (CTCL). www.broad.mit.e...
Broad WANG_RESPONSE_TO_FORSKOLIN_UP View Gene Set 0.002316 22 0.02979 186 Genes up-regulated in LNCaP cells (prostate cancer) treated with forskolin [PubChem=47936] an activator of PKA pathway. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_A_DN View Gene Set 0.002824 17 0.03593 187 Genes down-regulated in the luminal A subtype of breast cancer. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_14HR_UP View Gene Set 0.002816 150 0.03593 187 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 14 h time point that were not up-regulated at the previous time point 12 h. www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN View Gene Set 0.003141 22 0.03975 189 Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161]. www.broad.mit.e...
Broad CHUANG_OXIDATIVE_STRESS_RESPONSE_DN View Gene Set 0.003457 10 0.04352 190 Genes down-regulated in MCF7 cells (breast cancer) after treatment with the oxydants: hydrogen peroxyde menadione and t-butyl hydroperoxyde [PubChem=784 4055 6410]. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_DN View Gene Set 0.003514 25 0.04401 191 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad NUNODA_RESPONSE_TO_DASATINIB_IMATINIB_UP View Gene Set 0.003586 28 0.04467 192 Genes up-regulated in K562 cells (bone marrow) after treatment with dasatinib [PubChem=3062316] or imatinib [PubChem=5291]. www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN View Gene Set 0.003678 742 0.04559 193 Genes with copy number losses in primary neuroblastoma tumors. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON View Gene Set 0.003739 317 0.04611 194 Genes within amplicon 17q21-q25 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_DN View Gene Set 0.003775 168 0.04631 195 Genes down-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad LIANG_SILENCED_BY_METHYLATION_DN View Gene Set 0.003856 11 0.04705 196 Genes down-regulated in LD419 cells (fibroblast) after treatment with decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad SHEPARD_BMYB_MORPHOLINO_DN View Gene Set 0.003911 156 0.04749 197 Human orthologs of genes down-regulated in zebra fish after knockdown of BMYB [Gene ID=4605] by morpholino. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_EIF_PATHWAY View Gene Set 1.158e-05 16 0.002513 1 Eukaryotic protein translation www.broad.mit.e...
Broad BIOCARTA_MTA3_PATHWAY View Gene Set 3.803e-05 19 0.004126 2 Downregulated of MTA-3 in ER-negative Breast Tumors www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY View Gene Set 6.986e-05 10 0.005053 3 Role of Ran in mitotic spindle regulation www.broad.mit.e...
Broad BIOCARTA_ATM_PATHWAY View Gene Set 0.0009187 20 0.04529 4 ATM Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_ATRBRCA_PATHWAY View Gene Set 0.001043 21 0.04529 4 Role of BRCA1 BRCA2 and ATR in Cancer Susceptibility www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_SPLICEOSOME View Gene Set 3.013e-16 118 5.604e-14 1 Spliceosome www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS View Gene Set 1.781e-10 41 1.657e-08 2 Aminoacyl-tRNA biosynthesis www.broad.mit.e...
Broad KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS View Gene Set 7.672e-08 140 4.757e-06 3 Systemic lupus erythematosus www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR View Gene Set 2.05e-06 35 9.531e-05 4 Base excision repair www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION View Gene Set 3.977e-06 59 0.0001479 5 RNA degradation www.broad.mit.e...
Broad KEGG_DNA_REPLICATION View Gene Set 1.783e-05 36 0.0005526 6 DNA replication www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 2.973e-05 98 0.0007898 7 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS View Gene Set 3.94e-05 11 0.0009159 8 Valine leucine and isoleucine biosynthesis www.broad.mit.e...
Broad KEGG_ONE_CARBON_POOL_BY_FOLATE View Gene Set 0.0001933 17 0.003994 9 One carbon pool by folate www.broad.mit.e...
Broad KEGG_CITRATE_CYCLE_TCA_CYCLE View Gene Set 0.0005736 32 0.01067 10 Citrate cycle (TCA cycle) www.broad.mit.e...
Broad KEGG_CELL_CYCLE View Gene Set 0.0006406 128 0.01083 11 Cell cycle www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR View Gene Set 0.0007978 23 0.01237 12 Mismatch repair www.broad.mit.e...
Broad KEGG_LYSINE_DEGRADATION View Gene Set 0.001553 44 0.02222 13 Lysine degradation www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_GENE_EXPRESSION View Gene Set 3.201e-24 415 1.377e-21 1 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 9.09e-24 128 1.954e-21 2 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 1.151e-17 188 1.649e-15 3 Genes involved in Transcription www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 1.596e-17 97 1.716e-15 4 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 4.779e-16 124 4.11e-14 5 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 5.149e-15 95 3.69e-13 6 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 6.463e-15 142 3.97e-13 7 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION View Gene Set 2.402e-14 120 1.291e-12 8 Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING View Gene Set 1.632e-12 59 7.796e-11 9 Genes involved in RNA Polymerase I Promoter Opening www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE View Gene Set 1.888e-12 77 8.118e-11 10 Genes involved in Telomere Maintenance www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 1.92e-11 50 7.506e-10 11 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 1.129e-10 306 4.046e-09 12 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 2.192e-10 42 7.252e-09 13 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE View Gene Set 2.829e-10 82 8.689e-09 14 Genes involved in RNA PolymerasePromoter Clearance www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION View Gene Set 3.256e-10 40 9.333e-09 15 Genes involved in tRNA Aminoacylation www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS View Gene Set 2.123e-09 49 5.705e-08 16 Genes involved in Packaging Of Telomere Ends www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 2.854e-09 157 7.218e-08 17 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 5.021e-09 32 1.199e-07 18 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 8.668e-09 31 1.962e-07 19 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 1.752e-08 30 3.767e-07 20 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 7.713e-08 29 1.579e-06 21 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 1.184e-07 29 2.315e-06 22 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 1.391e-07 31 2.601e-06 23 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING View Gene Set 3.107e-07 25 5.566e-06 24 Genes involved in mRNA 3-end processing www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 3.797e-07 103 6.531e-06 25 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION View Gene Set 6.379e-07 23 1.055e-05 26 Genes involved in Cytosolic tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN View Gene Set 8.692e-07 29 1.384e-05 27 Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 1.097e-06 110 1.684e-05 28 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 1.148e-06 183 1.702e-05 29 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 1.316e-06 90 1.886e-05 30 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION View Gene Set 3.004e-06 20 4.167e-05 31 Genes involved in Mitochondrial tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 5.202e-06 89 6.99e-05 32 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_GLUCOSE_TRANSPORT View Gene Set 5.954e-06 38 7.758e-05 33 Genes involved in Glucose transport www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 7.207e-06 92 9.115e-05 34 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 9.983e-06 45 0.0001226 35 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES View Gene Set 1.553e-05 119 0.0001855 36 Genes involved in Metabolism of carbohydrates www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 2.971e-05 120 0.0003444 37 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE View Gene Set 3.043e-05 36 0.0003444 37 Genes involved in Pyruvate metabolism and TCA cycle www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 3.242e-05 103 0.0003575 39 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 3.791e-05 61 0.0004076 40 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 3.954e-05 76 0.0004139 41 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION View Gene Set 4.043e-05 83 0.0004139 41 Genes involved in RNA Polymerase II Transcription www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION View Gene Set 5.101e-05 31 0.0005009 43 Genes involved in DNA strand elongation www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS View Gene Set 5.125e-05 11 0.0005009 43 Genes involved in Purine ribonucleoside monophosphate biosynthesis www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY View Gene Set 5.243e-05 38 0.000501 45 Genes involved in mRNA Splicing - Minor Pathway www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 5.708e-05 11 0.0005336 46 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS View Gene Set 6.037e-05 37 0.0005523 47 Genes involved in Activation of ATR in response to replication stress www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES View Gene Set 9.651e-05 28 0.000861 48 Genes involved in Extension of Telomeres www.broad.mit.e...
Broad REACTOME_FORMATION_OF_TUBULIN_FOLDING_INTERMEDIATES_BY_CCT_TRIC View Gene Set 9.812e-05 22 0.000861 48 Genes involved in Formation of tubulin folding intermediates by CCT/TriC www.broad.mit.e...
Broad REACTOME_TRANSLATION_INITIATION_COMPLEX_FORMATION View Gene Set 0.0001057 56 0.000909 50 Genes involved in Translation initiation complex formation www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS View Gene Set 0.0001138 43 0.0009597 51 Genes involved in G2/M Checkpoints www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION_FROM_TYPE_2_PROMOTER View Gene Set 0.0001239 20 0.001012 52 Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_TRIC_CCT_WITH_TARGET_PROTEINS_DURING_BIOSYNTHESIS View Gene Set 0.0001247 29 0.001012 52 Genes involved in Association of TriC/CCT with target proteins during biosynthesis www.broad.mit.e...
Broad REACTOME_DNA_REPAIR View Gene Set 0.0001946 102 0.00155 54 Genes involved in DNA Repair www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 0.0002496 71 0.001952 55 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A View Gene Set 0.0002652 63 0.002036 56 Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS View Gene Set 0.0004528 215 0.003416 57 Genes involved in Metabolism of proteins www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 0.0004674 63 0.003465 58 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_CHAPERONIN_MEDIATED_PROTEIN_FOLDING View Gene Set 0.0005117 50 0.003729 59 Genes involved in Chaperonin-mediated protein folding www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA View Gene Set 0.0007025 21 0.005034 60 Genes involved in Deadenylation of mRNA www.broad.mit.e...
Broad REACTOME_CITRIC_ACID_CYCLE View Gene Set 0.0007839 19 0.005526 61 Genes involved in Citric acid cycle (TCA cycle) www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC View Gene Set 0.0008099 57 0.005528 62 Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE View Gene Set 0.0007992 71 0.005528 62 Genes involved in Regulation of APC/C activators between G1/S and early anaphase www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX View Gene Set 0.0009126 30 0.006131 64 Genes involved in Activation of the pre-replicative complex www.broad.mit.e...
Broad REACTOME_GLUCOSE_REGULATION_OF_INSULIN_SECRETION View Gene Set 0.001215 161 0.008038 65 Genes involved in Glucose Regulation of Insulin Secretion www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 0.001292 120 0.008416 66 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS View Gene Set 0.00149 18 0.009562 67 Genes involved in MicroRNA biogenesis www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM View Gene Set 0.001586 22 0.01003 68 Genes involved in Pyrimidine metabolism www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION View Gene Set 0.001735 34 0.01081 69 Genes involved in RNA Polymerase III Transcription www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 0.001783 102 0.01095 70 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX View Gene Set 0.00184 18 0.01114 71 Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex www.broad.mit.e...
Broad REACTOME_TRANSMEMBRANE_TRANSPORT_OF_SMALL_MOLECULES View Gene Set 0.002508 218 0.01498 72 Genes involved in Transmembrane transport of small molecules www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX View Gene Set 0.003904 52 0.02299 73 Genes involved in CDT1 association with the CDC6:ORC:origin complex www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION View Gene Set 0.004145 29 0.02408 74 Genes involved in RNA Polymerase III Transcription Initiation www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM View Gene Set 0.004217 18 0.02418 75 Genes involved in Pyruvate metabolism www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_AMINO_ACIDS View Gene Set 0.005157 162 0.02918 76 Genes involved in Metabolism of amino acids www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_3_TO_5_EXORIBONUCLEASE View Gene Set 0.005431 11 0.03033 77 Genes involved in mRNA Decay by 3' to 5' Exoribonuclease www.broad.mit.e...
Broad REACTOME_CHOLESTEROL_BIOSYNTHESIS View Gene Set 0.006151 21 0.03391 78 Genes involved in Cholesterol biosynthesis www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 0.00638 49 0.03473 79 Genes involved in Nucleotide Excision Repair www.broad.mit.e...
Broad REACTOME_BASE_EXCISION_REPAIR View Gene Set 0.007068 18 0.03707 80 Genes involved in Base Excision Repair www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX View Gene Set 0.006976 49 0.03707 80 Genes involved in Formation of the ternary complex and subsequently the 43S complex www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE View Gene Set 0.007043 43 0.03707 80 Genes involved in p53-Independent DNA Damage Response www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_TERMINATION View Gene Set 0.007252 17 0.03757 83 Genes involved in RNA Polymerase III Transcription Termination www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR View Gene Set 0.008489 21 0.04346 84 Genes involved in Double-Strand Break Repair www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR View Gene Set 0.009311 15 0.0471 85 Genes involved in Homologous Recombination Repair www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE View Gene Set 0.009582 15 0.04791 86 Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase www.broad.mit.e...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SGCGSSAAA_V$E2F1DP2_01 View Gene Set 1.253e-09 122 7.706e-07 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad CACGTG_V$MYC_Q2 View Gene Set 2.589e-09 734 7.962e-07 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad V$E2F_Q4_01 View Gene Set 6.496e-09 171 1.332e-06 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad KRCTCNNNNMANAGC_UNKNOWN View Gene Set 1.172e-08 60 1.801e-06 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KRCTCNNNNMANAGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 6.683e-08 167 8.22e-06 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F_02 View Gene Set 9.235e-08 169 9.466e-06 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q6_01 View Gene Set 1.524e-07 177 1.339e-05 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F_Q6_01 View Gene Set 1.763e-07 167 1.356e-05 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F_Q3 View Gene Set 2.538e-07 162 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 3.628e-07 165 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_03 View Gene Set 2.076e-07 171 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 3.468e-07 169 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 3.468e-07 169 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP1_01 View Gene Set 3.618e-07 174 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 3.468e-07 169 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F1DP1RB_01 View Gene Set 2.625e-07 168 1.394e-05 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 4.052e-07 289 1.466e-05 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F1_Q3 View Gene Set 7.774e-07 176 2.656e-05 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F_Q4 View Gene Set 1.017e-06 166 3.292e-05 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYCMAX_01 View Gene Set 1.296e-06 189 3.986e-05 20 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad V$E2F_Q3_01 View Gene Set 1.548e-06 171 4.532e-05 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1_Q4_01 View Gene Set 1.756e-06 167 4.91e-05 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad RRCCGTTA_UNKNOWN View Gene Set 4.669e-06 53 0.0001249 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RRCCGTTA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NFMUE1_Q6 View Gene Set 5.115e-05 175 0.001311 24 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MAX_01 View Gene Set 5.57e-05 194 0.00137 25 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 6.081e-05 580 0.001438 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$MYCMAX_B View Gene Set 0.0001133 193 0.002489 27 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad GGAANCGGAANY_UNKNOWN View Gene Set 0.0001094 79 0.002489 27 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGAANCGGAANY. Motif does not match any known transcription factor www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02 View Gene Set 0.000164 784 0.003478 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad V$USF_01 View Gene Set 0.0001876 186 0.003845 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_01 View Gene Set 0.0002067 55 0.004101 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TWSGCGCGAAAAYKR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NMYC_01 View Gene Set 0.000225 201 0.004325 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCCACGTGNNN which matches annotation for MYCN: v-myc myelocytomatosis viral related oncogene neuroblastoma derived (avian) www.broad.mit.e...
Broad V$ARNT_01 View Gene Set 0.0002351 196 0.004381 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...
Broad V$E2F1_Q4 View Gene Set 0.0002802 178 0.004786 34 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$HNF4_DR1_Q3 View Gene Set 0.0002785 192 0.004786 34 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAMCTTTGNCCN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha www.broad.mit.e...
Broad GKCGCNNNNNNNTGAYG_UNKNOWN View Gene Set 0.0002772 41 0.004786 34 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GKCGCNNNNNNNTGAYG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYCMAX_03 View Gene Set 0.0003165 187 0.005261 37 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNNNCACGTGNNNNNNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad GCGSCMNTTT_UNKNOWN View Gene Set 0.0004281 49 0.006929 38 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGSCMNTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$YY1_Q6 View Gene Set 0.0004572 166 0.00721 39 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F1_Q3_01 View Gene Set 0.0008153 188 0.01254 40 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGGCGCGRAANNGNM which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$USF_C View Gene Set 0.001059 211 0.01589 41 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NCACGTGN. Motif does not match any known transcription factor www.broad.mit.e...
Broad ACAWNRNSRCGG_UNKNOWN View Gene Set 0.001147 50 0.0168 42 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWNRNSRCGG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYC_Q2 View Gene Set 0.00142 135 0.0203 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTGS which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad YGCGYRCGC_UNKNOWN View Gene Set 0.002109 207 0.02948 44 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCGYRCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad GATGKMRGCG_UNKNOWN View Gene Set 0.00238 47 0.03253 45 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATGKMRGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$PAX4_01 View Gene Set 0.003377 201 0.04515 46 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGNVGTCANGCGTGNNSNNYN which matches annotation for PAX4: paired box gene 4 www.broad.mit.e...
Broad V$ZF5_01 View Gene Set 0.003524 180 0.04611 47 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GSGCGCGR which matches annotation for ZFP161: zinc finger protein 161 homolog (mouse) www.broad.mit.e...
Broad V$USF2_Q6 View Gene Set 0.003899 182 0.04996 48 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CASGYG. Motif does not match any known transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MORF_EIF3S2 View Gene Set 3.362e-40 220 1.436e-37 1 Neighborhood of EIF3S2 www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 2.1e-37 256 4.483e-35 2 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_FBL View Gene Set 8.693e-35 121 1.237e-32 3 Neighborhood of FBL www.broad.mit.e...
Broad MORF_RAD23A View Gene Set 5.548e-33 316 5.923e-31 4 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 1.22e-27 256 1.042e-25 5 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_AATF View Gene Set 3.618e-27 179 2.575e-25 6 Neighborhood of AATF www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 7.004e-27 173 4.272e-25 7 Neighborhood of PRKDC www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 4.745e-21 256 2.533e-19 8 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 2.285e-19 137 1.084e-17 9 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 2.835e-18 150 1.101e-16 10 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 2.691e-18 208 1.101e-16 10 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 3.794e-18 178 1.35e-16 12 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 1.341e-17 71 4.404e-16 13 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 2.143e-17 105 6.535e-16 14 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_DEK View Gene Set 2.873e-17 229 8.178e-16 15 Neighborhood of DEK www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 6.82e-17 145 1.82e-15 16 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 1.219e-16 174 3.061e-15 17 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 1.582e-16 73 3.752e-15 18 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 2.845e-16 155 6.395e-15 19 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 7.398e-16 210 1.58e-14 20 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 1.05e-15 247 2.136e-14 21 Neighborhood of SOD1 www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 4.262e-15 72 8.273e-14 22 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 8.116e-15 94 1.507e-13 23 Neighborhood of RAD54L www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 1.721e-14 276 3.061e-13 24 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 4.127e-14 222 7.049e-13 25 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 4.574e-14 90 7.513e-13 26 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 6.918e-14 170 1.086e-12 27 Neighborhood of RPA2 www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 7.122e-14 82 1.086e-12 27 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 1.222e-13 220 1.74e-12 29 Neighborhood of DDB1 www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 1.223e-13 79 1.74e-12 29 Neighborhood of UBE2N www.broad.mit.e...
Broad MORF_PHB View Gene Set 2.089e-13 112 2.877e-12 31 Neighborhood of PHB www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 5.762e-13 123 7.689e-12 32 Neighborhood of MAP2K2 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 7.406e-13 47 9.584e-12 33 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 1.422e-12 78 1.785e-11 34 Neighborhood of RAN www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 2.437e-12 58 2.973e-11 35 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 2.737e-12 52 3.246e-11 36 Neighborhood of KPNB1 www.broad.mit.e...
Broad MORF_RAN View Gene Set 6.099e-12 242 6.853e-11 37 Neighborhood of RAN www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 5.972e-12 57 6.853e-11 37 Neighborhood of RFC4 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 6.945e-12 75 7.604e-11 39 Neighborhood of SMC4L1 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 8.703e-12 58 9.29e-11 40 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_GMPS View Gene Set 1.255e-11 48 1.307e-10 41 Neighborhood of GMPS www.broad.mit.e...
Broad MORF_UNG View Gene Set 1.454e-11 65 1.478e-10 42 Neighborhood of UNG www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 1.756e-11 175 1.71e-10 43 Neighborhood of DAP3 www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 1.762e-11 93 1.71e-10 43 Neighborhood of PTPN11 www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 2.796e-11 36 2.653e-10 45 Neighborhood of MLH1 www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 2.926e-11 54 2.716e-10 46 Neighborhood of DEAF1 www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 4.21e-11 102 3.825e-10 47 Neighborhood of APEX1 www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 1.461e-10 50 1.299e-09 48 Neighborhood of MCM4 www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 1.979e-10 52 1.725e-09 49 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_SART1 View Gene Set 4.124e-10 55 3.522e-09 50 Neighborhood of SART1 www.broad.mit.e...
Broad MORF_USP5 View Gene Set 4.904e-10 46 4.106e-09 51 Neighborhood of USP5 www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 5.067e-10 62 4.161e-09 52 Neighborhood of CUL1 www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 5.215e-10 57 4.201e-09 53 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_EI24 View Gene Set 5.597e-10 136 4.426e-09 54 Neighborhood of EI24 www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 5.808e-10 56 4.509e-09 55 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_FBL View Gene Set 6.25e-10 119 4.766e-09 56 Neighborhood of FBL www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 1.061e-09 51 7.946e-09 57 Neighborhood of MCM5 www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 1.63e-09 41 1.2e-08 58 Neighborhood of GSPT1 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 1.881e-09 46 1.361e-08 59 Neighborhood of BUB1B www.broad.mit.e...
Broad GNF2_DEK View Gene Set 1.954e-09 45 1.391e-08 60 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 2.099e-09 62 1.469e-08 61 Neighborhood of PCNA www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 3.052e-09 62 2.102e-08 62 Neighborhood of CCNA2 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 4.426e-09 202 2.975e-08 63 Neighborhood of PRKAG1 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 4.46e-09 36 2.975e-08 63 Neighborhood of RRM2 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 5.277e-09 47 3.466e-08 65 Neighborhood of PPP1CC www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 5.664e-09 85 3.664e-08 66 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 6.608e-09 149 4.211e-08 67 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 6.876e-09 63 4.318e-08 68 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 9.747e-09 67 6.032e-08 69 Neighborhood of CDC16 www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 2.444e-08 26 1.491e-07 70 Neighborhood of MSH2 www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 3.869e-08 54 2.327e-07 71 Neighborhood of RBBP6 www.broad.mit.e...
Broad GNF2_DENR View Gene Set 4.178e-08 39 2.478e-07 72 Neighborhood of DENR www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 4.622e-08 57 2.704e-07 73 Neighborhood of TERF1 www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 4.797e-08 30 2.768e-07 74 Neighborhood of MSH6 www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 5.195e-08 35 2.958e-07 75 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 5.944e-08 76 3.34e-07 76 Neighborhood of EIF4E www.broad.mit.e...
Broad GNF2_NS View Gene Set 8.273e-08 35 4.588e-07 77 Neighborhood of NS www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 8.655e-08 110 4.738e-07 78 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 1.122e-07 95 6.066e-07 79 Neighborhood of MTA1 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 1.142e-07 55 6.096e-07 80 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 1.201e-07 49 6.332e-07 81 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 2.188e-07 43 1.14e-06 82 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 3.077e-07 52 1.583e-06 83 Neighborhood of CDC20 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 5.025e-07 45 2.555e-06 84 Neighborhood of HAT1 www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 5.281e-07 56 2.653e-06 85 Neighborhood of CDC2 www.broad.mit.e...
Broad GCM_CSNK2B View Gene Set 6.04e-07 88 2.999e-06 86 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 6.881e-07 108 3.377e-06 87 Neighborhood of EIF3S6 www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 7.678e-07 34 3.726e-06 88 Neighborhood of RAF1 www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 9.45e-07 113 4.534e-06 89 Neighborhood of ACTG1 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 1.129e-06 53 5.355e-06 90 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_TDG View Gene Set 1.302e-06 23 6.108e-06 91 Neighborhood of TDG www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 1.529e-06 38 7.097e-06 92 Neighborhood of RFC3 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 1.802e-06 94 8.276e-06 93 Neighborhood of RAF1 www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 1.93e-06 36 8.765e-06 94 Neighborhood of CKS1B www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 2.056e-06 32 9.24e-06 95 Neighborhood of ANP32B www.broad.mit.e...
Broad GCM_CBFB View Gene Set 2.098e-06 59 9.33e-06 96 Neighborhood of CBFB www.broad.mit.e...
Broad GNF2_ELAC2 View Gene Set 2.136e-06 32 9.403e-06 97 Neighborhood of ELAC2 www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 3.151e-06 29 1.373e-05 98 Neighborhood of G22P1 www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 3.724e-06 61 1.606e-05 99 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_ERH View Gene Set 8.159e-06 103 3.484e-05 100 Neighborhood of ERH www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 9.573e-06 108 4.047e-05 101 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 1.032e-05 49 4.279e-05 102 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 1.023e-05 120 4.279e-05 102 Neighborhood of CDC10 www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 1.274e-05 29 5.231e-05 104 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_FANCG View Gene Set 1.37e-05 148 5.57e-05 105 Neighborhood of FANCG www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 1.579e-05 61 6.359e-05 106 Neighborhood of BUB1B www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 1.608e-05 157 6.415e-05 107 Neighborhood of RAD21 www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 1.764e-05 33 6.973e-05 108 Neighborhood of UBE2I www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 1.856e-05 25 7.269e-05 109 Neighborhood of BUB1 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 2.144e-05 26 8.323e-05 110 Neighborhood of MKI67 www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 2.656e-05 20 0.0001022 111 Neighborhood of RPA1 www.broad.mit.e...
Broad MORF_FDXR View Gene Set 3.044e-05 205 0.0001161 112 Neighborhood of FDXR www.broad.mit.e...
Broad MORF_NPM1 View Gene Set 3.484e-05 152 0.0001316 113 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 3.89e-05 50 0.0001457 114 Neighborhood of SNRP70 www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 4.213e-05 22 0.0001564 115 Neighborhood of BUB3 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 4.827e-05 37 0.0001777 116 Neighborhood of CENPE www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 5.162e-05 52 0.0001884 117 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_DDX11 View Gene Set 6.477e-05 138 0.0002344 118 Neighborhood of DDX11 www.broad.mit.e...
Broad GCM_RING1 View Gene Set 6.714e-05 106 0.0002409 119 Neighborhood of RING1 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 7.278e-05 99 0.0002578 120 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 7.305e-05 197 0.0002578 120 Neighborhood of AP2M1 www.broad.mit.e...
Broad GNF2_TTK View Gene Set 7.375e-05 34 0.0002581 122 Neighborhood of TTK www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 8.386e-05 45 0.0002911 123 Neighborhood of CKS2 www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 0.0001093 98 0.0003762 124 Neighborhood of RFC1 www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 0.0001201 28 0.0004103 125 Neighborhood of H2AFX www.broad.mit.e...
Broad GCM_BECN1 View Gene Set 0.0001342 59 0.0004549 126 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 0.0001567 71 0.0005268 127 Neighborhood of BMI1 www.broad.mit.e...
Broad MORF_ORC1L View Gene Set 0.0001802 61 0.0006012 128 Neighborhood of ORC1L www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 0.0002519 145 0.0008339 129 Neighborhood of PPP1CA www.broad.mit.e...
Broad GCM_MAX View Gene Set 0.0002679 28 0.0008799 130 Neighborhood of MAX www.broad.mit.e...
Broad MORF_IKBKG View Gene Set 0.000278 119 0.000906 131 Neighborhood of IKBKG www.broad.mit.e...
Broad MORF_CCNI View Gene Set 0.0002937 76 0.0009485 132 Neighborhood of CCNI www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 0.0002954 33 0.0009485 132 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GCM_NF2 View Gene Set 0.0003038 235 0.000968 134 Neighborhood of NF2 www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.0003645 131 0.001153 135 Neighborhood of TPR www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 0.000386 30 0.001212 136 Neighborhood of SMC2L1 www.broad.mit.e...
Broad MORF_HEAB View Gene Set 0.0004079 71 0.001271 137 Neighborhood of HEAB www.broad.mit.e...
Broad GNF2_SMC1L1 View Gene Set 0.0004182 24 0.001294 138 Neighborhood of SMC1L1 www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 0.0007408 119 0.002276 139 Neighborhood of AP3D1 www.broad.mit.e...
Broad MORF_RBBP8 View Gene Set 0.0007512 190 0.002291 140 Neighborhood of RBBP8 www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 0.0008723 175 0.002631 141 Neighborhood of SKP1A www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.0008762 100 0.002631 141 Neighborhood of DFFA www.broad.mit.e...
Broad GCM_SUPT4H1 View Gene Set 0.0008812 58 0.002631 141 Neighborhood of SUPT4H1 www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 0.00147 79 0.004358 144 Neighborhood of PRDX3 www.broad.mit.e...
Broad GCM_AIP View Gene Set 0.001783 36 0.00525 145 Neighborhood of AIP www.broad.mit.e...
Broad MORF_PTPN9 View Gene Set 0.001806 54 0.005281 146 Neighborhood of PTPN9 www.broad.mit.e...
Broad MORF_CCNF View Gene Set 0.001865 65 0.005417 147 Neighborhood of CCNF www.broad.mit.e...
Broad GCM_FANCC View Gene Set 0.002003 120 0.00578 148 Neighborhood of FANCC www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 0.002072 76 0.005939 149 Neighborhood of PSME1 www.broad.mit.e...
Broad MORF_RFC5 View Gene Set 0.002169 69 0.006175 150 Neighborhood of RFC5 www.broad.mit.e...
Broad GCM_PFN1 View Gene Set 0.002229 47 0.006304 151 Neighborhood of PFN1 www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 0.002307 98 0.006481 152 Neighborhood of DAP3 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 0.002329 33 0.0065 153 Neighborhood of PPP6C www.broad.mit.e...
Broad MORF_SS18 View Gene Set 0.002381 55 0.006601 154 Neighborhood of SS18 www.broad.mit.e...
Broad MORF_CASP2 View Gene Set 0.002542 89 0.007004 155 Neighborhood of CASP2 www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 0.003727 30 0.0102 156 Neighborhood of RAD21 www.broad.mit.e...
Broad GCM_DPF2 View Gene Set 0.00415 32 0.01122 157 Neighborhood of DPF2 www.broad.mit.e...
Broad GCM_TPR View Gene Set 0.004146 29 0.01122 157 Neighborhood of TPR www.broad.mit.e...
Broad MORF_REV3L View Gene Set 0.004324 52 0.01161 159 Neighborhood of REV3L www.broad.mit.e...
Broad GCM_SMARCD1 View Gene Set 0.005166 101 0.01379 160 Neighborhood of SMARCD1 www.broad.mit.e...
Broad MORF_CSNK1D View Gene Set 0.006278 65 0.01665 161 Neighborhood of CSNK1D www.broad.mit.e...
Broad MORF_EIF4A2 View Gene Set 0.006319 120 0.01666 162 Neighborhood of EIF4A2 www.broad.mit.e...
Broad MORF_PPP5C View Gene Set 0.006367 81 0.01668 163 Neighborhood of PPP5C www.broad.mit.e...
Broad GCM_PRKCG View Gene Set 0.006483 60 0.01688 164 Neighborhood of PRKCG www.broad.mit.e...
Broad MORF_GPX4 View Gene Set 0.00668 49 0.01729 165 Neighborhood of GPX4 www.broad.mit.e...
Broad GCM_USP6 View Gene Set 0.008186 54 0.02106 166 Neighborhood of USP6 www.broad.mit.e...
Broad GCM_HMGA2 View Gene Set 0.008991 123 0.02299 167 Neighborhood of HMGA2 www.broad.mit.e...
Broad MORF_CNTN1 View Gene Set 0.009181 95 0.0232 168 Neighborhood of CNTN1 www.broad.mit.e...
Broad MORF_PML View Gene Set 0.009156 129 0.0232 168 Neighborhood of PML www.broad.mit.e...
Broad GCM_DDX11 View Gene Set 0.01037 38 0.02606 170 Neighborhood of DDX11 www.broad.mit.e...
Broad GCM_HDAC1 View Gene Set 0.01181 30 0.02949 171 Neighborhood of HDAC1 www.broad.mit.e...
Broad GCM_ING1 View Gene Set 0.01201 50 0.02982 172 Neighborhood of ING1 www.broad.mit.e...
Broad MORF_MYST2 View Gene Set 0.01233 60 0.03043 173 Neighborhood of MYST2 www.broad.mit.e...
Broad MORF_DAP View Gene Set 0.01294 72 0.03176 174 Neighborhood of DAP www.broad.mit.e...
Broad MORF_ERCC2 View Gene Set 0.01324 91 0.0323 175 Neighborhood of ERCC2 www.broad.mit.e...
Broad GCM_DENR View Gene Set 0.01946 40 0.04722 176 Neighborhood of DENR www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 0.02004 196 0.04835 177 Neighborhood of RAC1 www.broad.mit.e...
Broad MORF_ARAF1 View Gene Set 0.02036 70 0.04857 178 Neighborhood of ARAF1 www.broad.mit.e...
Broad GNF2_TYK2 View Gene Set 0.02028 31 0.04857 178 Neighborhood of TYK2 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 0.02061 162 0.04865 180 Neighborhood of PSMC1 www.broad.mit.e...
Broad GCM_MLL View Gene Set 0.02062 130 0.04865 180 Neighborhood of MLL www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_17 View Gene Set 6.966e-15 351 3.163e-12 1 Genes in module_17 www.broad.mit.e...
Broad module_183 View Gene Set 1.465e-11 52 3.007e-09 2 Genes in module_183 www.broad.mit.e...
Broad module_244 View Gene Set 1.987e-11 182 3.007e-09 2 Genes in module_244 www.broad.mit.e...
Broad module_98 View Gene Set 1.683e-10 375 1.91e-08 4 Genes in module_98 www.broad.mit.e...
Broad module_198 View Gene Set 1.063e-09 288 9.655e-08 5 Genes in module_198 www.broad.mit.e...
Broad module_54 View Gene Set 1.473e-09 242 1.114e-07 6 Genes in module_54 www.broad.mit.e...
Broad module_32 View Gene Set 5.453e-09 227 3.536e-07 7 Genes in module_32 www.broad.mit.e...
Broad module_252 View Gene Set 4.142e-08 224 2.351e-06 8 Genes in module_252 www.broad.mit.e...
Broad module_35 View Gene Set 2.522e-07 16 1.272e-05 9 Genes in module_35 www.broad.mit.e...
Broad module_110 View Gene Set 9.309e-07 15 4.226e-05 10 Genes in module_110 www.broad.mit.e...
Broad module_16 View Gene Set 2.043e-06 495 8.433e-05 11 Genes in module_16 www.broad.mit.e...
Broad module_124 View Gene Set 3.056e-06 92 0.0001129 12 Genes in module_124 www.broad.mit.e...
Broad module_219 View Gene Set 3.234e-06 26 0.0001129 12 Genes in module_219 www.broad.mit.e...
Broad module_57 View Gene Set 4.697e-06 54 0.0001361 14 Genes in module_57 www.broad.mit.e...
Broad module_158 View Gene Set 4.795e-06 41 0.0001361 14 Genes in module_158 www.broad.mit.e...
Broad module_278 View Gene Set 4.667e-06 34 0.0001361 14 Genes in module_278 www.broad.mit.e...
Broad module_397 View Gene Set 6.359e-06 114 0.0001698 17 Genes in module_397 www.broad.mit.e...
Broad module_392 View Gene Set 6.777e-06 18 0.0001709 18 Genes in module_392 www.broad.mit.e...
Broad module_3 View Gene Set 7.296e-06 374 0.0001743 19 Genes in module_3 www.broad.mit.e...
Broad module_133 View Gene Set 7.913e-06 15 0.0001796 20 Genes in module_133 www.broad.mit.e...
Broad module_160 View Gene Set 8.658e-06 15 0.0001872 21 Genes in module_160 www.broad.mit.e...
Broad module_61 View Gene Set 1.071e-05 50 0.000221 22 Genes in module_61 www.broad.mit.e...
Broad module_18 View Gene Set 1.358e-05 434 0.0002466 23 Genes in module_18 www.broad.mit.e...
Broad module_115 View Gene Set 1.305e-05 27 0.0002466 23 Genes in module_115 www.broad.mit.e...
Broad module_337 View Gene Set 1.337e-05 59 0.0002466 23 Genes in module_337 www.broad.mit.e...
Broad module_125 View Gene Set 1.452e-05 42 0.0002535 26 Genes in module_125 www.broad.mit.e...
Broad module_102 View Gene Set 3.897e-05 18 0.0006552 27 Genes in module_102 www.broad.mit.e...
Broad module_432 View Gene Set 4.256e-05 15 0.00069 28 Genes in module_432 www.broad.mit.e...
Broad module_197 View Gene Set 6.15e-05 170 0.0009629 29 Genes in module_197 www.broad.mit.e...
Broad module_81 View Gene Set 6.943e-05 20 0.001051 30 Genes in module_81 www.broad.mit.e...
Broad module_538 View Gene Set 8.531e-05 8 0.001249 31 Genes in module_538 www.broad.mit.e...
Broad module_126 View Gene Set 9.88e-05 173 0.001402 32 Genes in module_126 www.broad.mit.e...
Broad module_149 View Gene Set 0.0001582 36 0.002176 33 Genes in module_149 www.broad.mit.e...
Broad module_53 View Gene Set 0.0002084 389 0.002782 34 Genes in module_53 www.broad.mit.e...
Broad module_174 View Gene Set 0.0002355 92 0.003055 35 Genes in module_174 www.broad.mit.e...
Broad module_376 View Gene Set 0.0002956 7 0.003727 36 Genes in module_376 www.broad.mit.e...
Broad module_457 View Gene Set 0.0003357 9 0.004119 37 Genes in module_457 www.broad.mit.e...
Broad module_241 View Gene Set 0.0005456 71 0.006351 38 Genes in module_241 www.broad.mit.e...
Broad module_552 View Gene Set 0.0005384 18 0.006351 38 Genes in module_552 www.broad.mit.e...
Broad module_352 View Gene Set 0.0005752 17 0.006528 40 Genes in module_352 www.broad.mit.e...
Broad module_15 View Gene Set 0.0006473 347 0.007168 41 Genes in module_15 www.broad.mit.e...
Broad module_450 View Gene Set 0.0007324 9 0.007917 42 Genes in module_450 www.broad.mit.e...
Broad module_403 View Gene Set 0.0008159 44 0.008614 43 Genes in module_403 www.broad.mit.e...
Broad module_388 View Gene Set 0.001407 17 0.01451 44 Genes in module_388 www.broad.mit.e...
Broad module_155 View Gene Set 0.001568 25 0.01582 45 Genes in module_155 www.broad.mit.e...
Broad module_120 View Gene Set 0.001846 72 0.01821 46 Genes in module_120 www.broad.mit.e...
Broad module_8 View Gene Set 0.00205 403 0.0198 47 Genes in module_8 www.broad.mit.e...
Broad module_485 View Gene Set 0.002114 44 0.01999 48 Genes in module_485 www.broad.mit.e...
Broad module_21 View Gene Set 0.002503 10 0.02319 49 Genes in module_21 www.broad.mit.e...
Broad module_229 View Gene Set 0.002935 31 0.02665 50 Genes in module_229 www.broad.mit.e...
Broad module_291 View Gene Set 0.003139 63 0.02794 51 Genes in module_291 www.broad.mit.e...
Broad module_306 View Gene Set 0.00326 26 0.02846 52 Genes in module_306 www.broad.mit.e...
Broad module_245 View Gene Set 0.005761 26 0.04935 53 Genes in module_245 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 3.863e-25 1197 3.187e-22 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 1.128e-21 147 4.655e-19 2 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 3.47e-19 801 9.541e-17 3 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 3.865e-18 1623 7.973e-16 4 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 1.237e-13 73 2.041e-11 5 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 3.089e-10 253 4.247e-08 6 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 7.167e-10 74 8.447e-08 7 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397 View Gene Set 1.789e-08 59 1.844e-06 8 Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS View Gene Set 1.592e-07 27 1.236e-05 9 Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 1.417e-07 738 1.236e-05 9 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS View Gene Set 1.648e-07 70 1.236e-05 9 Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 1.928e-07 101 1.325e-05 12 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 3.445e-07 660 2.186e-05 13 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY View Gene Set 5.288e-07 59 3.116e-05 14 Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. www.broad.mit.e...
Broad CELLULAR_BIOSYNTHETIC_PROCESS View Gene Set 7.794e-07 311 4.287e-05 15 Genes annotated by the GO term GO:0044249. The chemical reactions and pathways resulting in the formation of substances carried out by individual cells. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 1.294e-06 623 6.281e-05 16 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 1.28e-06 625 6.281e-05 16 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_TRANSPORT View Gene Set 3.391e-06 31 0.0001554 18 Genes annotated by the GO term GO:0015931. The directed movement of nucleobases nucleosides nucleotides and nucleic acids into out of within or between cells. www.broad.mit.e...
Broad ONE_CARBON_COMPOUND_METABOLIC_PROCESS View Gene Set 4.187e-06 26 0.0001818 19 Genes annotated by the GO term GO:0006730. The chemical reactions and pathways involving compounds containing a single carbon atom. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 6.825e-06 767 0.0002816 20 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad TRANSLATION View Gene Set 7.476e-06 177 0.0002937 21 Genes annotated by the GO term GO:0006412. The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 9.068e-06 779 0.00034 22 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 1.172e-05 601 0.0004202 23 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad RNA_EXPORT_FROM_NUCLEUS View Gene Set 2.441e-05 20 0.0008086 24 Genes annotated by the GO term GO:0006405. The directed movement of RNA from the nucleus to the cytoplasm. www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS View Gene Set 2.45e-05 159 0.0008086 24 Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. www.broad.mit.e...
Broad DNA_REPAIR View Gene Set 3.39e-05 123 0.001076 26 Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION_EPIGENETIC View Gene Set 4.779e-05 30 0.001445 27 Genes annotated by the GO term GO:0040029. Any process that modulates the frequency rate or extent of gene expression; the process is mitotically or meiotically heritable or is stably self-propagated in the cytoplasm of a resting cell and does not entail a change in DNA sequence. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 4.903e-05 555 0.001445 27 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad BASE_EXCISION_REPAIR View Gene Set 5.379e-05 16 0.00153 29 Genes annotated by the GO term GO:0006284. In base excision repair an altered base is removed by a DNA glycosylase enzyme followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS View Gene Set 6.352e-05 197 0.001708 30 Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 6.418e-05 304 0.001708 30 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad TRNA_METABOLIC_PROCESS View Gene Set 7.306e-05 18 0.001884 32 Genes annotated by the GO term GO:0006399. The chemical reactions and pathways involving tRNA transfer RNA a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases the function of which has not been completely established. www.broad.mit.e...
Broad AMINO_ACID_METABOLIC_PROCESS View Gene Set 7.559e-05 75 0.00189 33 Genes annotated by the GO term GO:0006520. The chemical reactions and pathways involving amino acids organic acids containing one or more amino substituents. www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS View Gene Set 9.291e-05 53 0.002246 34 Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS View Gene Set 9.53e-05 117 0.002246 34 Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. www.broad.mit.e...
Broad COENZYME_METABOLIC_PROCESS View Gene Set 0.0001215 37 0.002718 36 Genes annotated by the GO term GO:0006732. The chemical reactions and pathways involving coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed. www.broad.mit.e...
Broad TRANSLATIONAL_INITIATION View Gene Set 0.0001219 39 0.002718 36 Genes annotated by the GO term GO:0006413. The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome mRNA and an initiation complex that contains the first aminoacyl-tRNA. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.0001347 449 0.002924 38 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad NUCLEAR_EXPORT View Gene Set 0.0001426 31 0.003016 39 Genes annotated by the GO term GO:0051168. The directed movement of substances out of the nucleus. www.broad.mit.e...
Broad MITOCHONDRION_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001701 47 0.003424 40 Genes annotated by the GO term GO:0007005. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a mitochondrion; includes mitochondrial morphology and distribution and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.0001677 457 0.003424 40 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.0001757 452 0.003451 42 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 0.0002913 271 0.005589 43 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad DNA_MODIFICATION View Gene Set 0.0004666 10 0.008749 44 Genes annotated by the GO term GO:0006304. The covalent alteration of one or more nucleotide sites in DNA resulting in a change in its properties. www.broad.mit.e...
Broad BIOSYNTHETIC_PROCESS View Gene Set 0.0004966 459 0.00901 45 Genes annotated by the GO term GO:0009058. The energy-requiring part of metabolism in which simpler substances are transformed into more complex ones as in growth and other biosynthetic processes. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0005024 458 0.00901 45 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 0.000526 167 0.009025 47 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad MRNA_SPLICE_SITE_SELECTION View Gene Set 0.0005148 6 0.009025 47 Genes annotated by the GO term GO:0006376. Selection of a splice site by components of the assembling spliceosome. www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE View Gene Set 0.000536 72 0.009025 47 Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_III_PROMOTER View Gene Set 0.0005911 19 0.009753 50 Genes annotated by the GO term GO:0006383. The synthesis of RNA from a DNA template by RNA polymerase III (Pol III) originating at a Pol III-specific promoter. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 0.0006212 187 0.01005 51 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad M_PHASE View Gene Set 0.0006424 111 0.01019 52 Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division. www.broad.mit.e...
Broad AMINO_ACID_AND_DERIVATIVE_METABOLIC_PROCESS View Gene Set 0.000848 98 0.0132 53 Genes annotated by the GO term GO:0006519. The chemical reactions and pathways involving amino acids organic acids containing one or more amino substituents and compounds derived from amino acids. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.0008998 285 0.01375 54 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.0009802 14 0.0147 55 Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 0.001105 288 0.01628 56 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad REGULATION_OF_TRANSLATIONAL_INITIATION View Gene Set 0.001174 31 0.01659 57 Genes annotated by the GO term GO:0006446. Any process that modulates the frequency rate or extent of translational initiation. www.broad.mit.e...
Broad CELLULAR_PROTEIN_COMPLEX_DISASSEMBLY View Gene Set 0.001186 13 0.01659 57 Genes annotated by the GO term GO:0043624. The disaggregation of a protein complex into its constituent components occurring at the level of an individual cell. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad RRNA_METABOLIC_PROCESS View Gene Set 0.001156 12 0.01659 57 Genes annotated by the GO term GO:0016072. The chemical reactions and pathways involving rRNA ribosomal RNA a structural constituent of ribosomes. www.broad.mit.e...
Broad NUCLEOCYTOPLASMIC_TRANSPORT View Gene Set 0.001413 83 0.01943 60 Genes annotated by the GO term GO:0006913. The directed movement of molecules between the nucleus and the cytoplasm. www.broad.mit.e...
Broad SPLICEOSOME_ASSEMBLY View Gene Set 0.001627 13 0.022 61 Genes annotated by the GO term GO:0000245. The aggregation arrangement and bonding together of the spliceosome a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT View Gene Set 0.001767 23 0.02278 62 Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure. www.broad.mit.e...
Broad PROTEIN_COMPLEX_DISASSEMBLY View Gene Set 0.001718 14 0.02278 62 Genes annotated by the GO term GO:0043241. The disaggregation of a protein complex into its constituent components. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad RRNA_PROCESSING View Gene Set 0.001755 11 0.02278 62 Genes annotated by the GO term GO:0006364. Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. www.broad.mit.e...
Broad DNA_REPLICATION_INITIATION View Gene Set 0.002226 15 0.02825 65 Genes annotated by the GO term GO:0006270. The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix the recruitment of DNA polymerases and the initiation of polymerase action. www.broad.mit.e...
Broad NUCLEAR_TRANSPORT View Gene Set 0.00226 84 0.02826 66 Genes annotated by the GO term GO:0051169. The directed movement of substances into out of or within the nucleus. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.003287 34 0.04048 67 Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. www.broad.mit.e...
Broad ELECTRON_TRANSPORT_GO_0006118 View Gene Set 0.003415 51 0.04084 68 Genes annotated by the GO term GO:0006118. The transport of electrons from an electron donor to an electron acceptor. www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION View Gene Set 0.003379 55 0.04084 68 Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. www.broad.mit.e...
Broad COVALENT_CHROMATIN_MODIFICATION View Gene Set 0.003656 23 0.04308 70 Genes annotated by the GO term GO:0016569. The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEUS View Gene Set 3.839e-30 1353 8.944e-28 1 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 1.255e-27 543 1.462e-25 2 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 1.338e-17 434 7.793e-16 3 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 1.338e-17 434 7.793e-16 3 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 2.259e-17 1144 1.053e-15 5 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad ORGANELLE_PART View Gene Set 3.476e-17 1149 1.35e-15 6 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 5.667e-15 365 1.886e-13 7 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 4.472e-13 914 1.237e-11 8 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 4.777e-13 335 1.237e-11 8 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 2.809e-11 129 6.545e-10 10 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 4.489e-10 116 9.509e-09 11 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad ENVELOPE View Gene Set 8.418e-09 165 1.509e-07 12 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 8.418e-09 165 1.509e-07 12 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 1.071e-08 140 1.783e-07 14 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 4.235e-08 266 6.579e-07 15 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 5.06e-08 799 7.369e-07 16 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 6.041e-08 44 8.28e-07 17 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART View Gene Set 3.004e-07 40 3.889e-06 18 Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells. www.broad.mit.e...
Broad NUCLEAR_PORE View Gene Set 4.128e-07 29 5.062e-06 19 Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined. www.broad.mit.e...
Broad PORE_COMPLEX View Gene Set 4.71e-07 34 5.487e-06 20 Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 4.952e-07 48 5.495e-06 21 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 6.153e-07 20 6.516e-06 22 Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs. www.broad.mit.e...
Broad NUCLEOPLASM_PART View Gene Set 1.063e-06 202 1.077e-05 23 Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE View Gene Set 1.108e-05 85 0.0001033 24 Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 1.092e-05 122 0.0001033 24 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 2.205e-05 53 0.0001976 26 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad MITOCHONDRIAL_MATRIX View Gene Set 2.641e-05 46 0.0002122 27 Genes annotated by the GO term GO:0005759. The gel-like material with considerable fine structure that lies in the matrix space or lumen of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and in some organisms the enzymes concerned with fatty-acid oxidation. www.broad.mit.e...
Broad MITOCHONDRIAL_LUMEN View Gene Set 2.641e-05 46 0.0002122 27 Genes annotated by the GO term GO:0031980. The volume enclosed by the mitochondrial inner membrane. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 2.515e-05 95 0.0002122 27 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE View Gene Set 3.087e-05 74 0.000232 30 Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 3.019e-05 95 0.000232 30 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 4.775e-05 71 0.0003477 32 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad NUCLEOLAR_PART View Gene Set 5.366e-05 16 0.0003789 33 Genes annotated by the GO term GO:0044452. Any constituent part of a nucleolus a small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. www.broad.mit.e...
Broad CHROMATIN View Gene Set 6.147e-05 35 0.0004115 34 Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome. www.broad.mit.e...
Broad MITOCHONDRIAL_INNER_MEMBRANE View Gene Set 6.181e-05 66 0.0004115 34 Genes annotated by the GO term GO:0005743. The inner i.e. lumen-facing lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART View Gene Set 0.0001274 33 0.0008243 36 Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 0.0003216 613 0.001972 37 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 0.0003216 613 0.001972 37 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.0005362 9 0.003203 39 Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA. www.broad.mit.e...
Broad NUCLEAR_CHROMATIN View Gene Set 0.0006111 14 0.003559 40 Genes annotated by the GO term GO:0000790. The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.0008362 16 0.004531 41 Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX View Gene Set 0.0008362 16 0.004531 41 Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX View Gene Set 0.0008362 16 0.004531 41 Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity. www.broad.mit.e...
Broad RIBOSOMAL_SUBUNIT View Gene Set 0.0008773 20 0.004646 44 Genes annotated by the GO term GO:0033279. Either of the two ribonucleoprotein complexes that associate to form a ribosome. www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASEII_HOLOENZYME View Gene Set 0.001088 65 0.005636 45 Genes annotated by the GO term GO:0016591. Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA D E F and H which are required for promoter recognition and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA. www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME View Gene Set 0.001297 22 0.006432 46 Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle. www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME View Gene Set 0.001297 22 0.006432 46 Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes. www.broad.mit.e...
Broad ORGANELLE_OUTER_MEMBRANE View Gene Set 0.00181 24 0.008787 48 Genes annotated by the GO term GO:0031968. The outer i.e. cytoplasm-facing lipid bilayer of an organelle envelope. www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER View Gene Set 0.002186 64 0.0104 49 Genes annotated by the GO term GO:0005815. A region in a eukaryotic cell such as a centrosome or basal body from which microtubules grow. www.broad.mit.e...
Broad OUTER_MEMBRANE View Gene Set 0.002553 25 0.0119 50 Genes annotated by the GO term GO:0019867. The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. www.broad.mit.e...
Broad CONDENSED_NUCLEAR_CHROMOSOME View Gene Set 0.002924 17 0.01336 51 Genes annotated by the GO term GO:0000794. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus. www.broad.mit.e...
Broad EUKARYOTIC_TRANSLATION_INITIATION_FACTOR_3_COMPLEX View Gene Set 0.00308 10 0.0138 52 Genes annotated by the GO term GO:0005852. A complex of several polypeptides that plays at least two important roles in protein synthesis: First eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. www.broad.mit.e...
Broad CENTROSOME View Gene Set 0.003924 55 0.01725 53 Genes annotated by the GO term GO:0005813. A structure comprised of a core structure (in most organisms a pair of centrioles) and peripheral material from which a microtubule-based structure such as a spindle apparatus is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells though in animal cells it changes continually during the cell-division cycle. www.broad.mit.e...
Broad INTEGRATOR_COMPLEX View Gene Set 0.004478 13 0.01932 54 Genes annotated by the GO term GO:0032039. A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II. www.broad.mit.e...
Broad CONDENSED_CHROMOSOME View Gene Set 0.009856 32 0.04175 55 Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure. www.broad.mit.e...
Broad MITOCHONDRIAL_OUTER_MEMBRANE View Gene Set 0.01104 18 0.04595 56 Genes annotated by the GO term GO:0005741. The outer i.e. cytoplasm-facing lipid bilayer of the mitochondrial envelope. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_BINDING View Gene Set 4.022e-11 236 1.593e-08 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING View Gene Set 1.739e-07 39 3.443e-05 2 Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad TRANSLATION_INITIATION_FACTOR_ACTIVITY View Gene Set 4.631e-07 24 6.113e-05 3 Genes annotated by the GO term GO:0003743. Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY View Gene Set 1.767e-06 41 0.0001749 4 Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_OXYGEN_BONDS View Gene Set 3.201e-06 14 0.0002535 5 Genes annotated by the GO term GO:0016875. Catalysis of the ligation of two substances via a carbon-oxygen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad ATP_DEPENDENT_HELICASE_ACTIVITY View Gene Set 5.006e-06 26 0.0002832 6 Genes annotated by the GO term GO:0008026. Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix. www.broad.mit.e...
Broad HELICASE_ACTIVITY View Gene Set 4.97e-06 49 0.0002832 6 Genes annotated by the GO term GO:0004386. Catalysis of the unwinding of a DNA or RNA duplex. www.broad.mit.e...
Broad ATP_DEPENDENT_RNA_HELICASE_ACTIVITY View Gene Set 1.055e-05 17 0.0005224 8 Genes annotated by the GO term GO:0004004. Catalysis of the reaction: ATP + H2O = ADP + phosphate driving the unwinding of an RNA helix. www.broad.mit.e...
Broad RNA_DEPENDENT_ATPASE_ACTIVITY View Gene Set 2.046e-05 18 0.0009002 9 Genes annotated by the GO term GO:0008186. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of RNA; drives another reaction. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 3.011e-05 587 0.001192 10 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...
Broad LIGASE_ACTIVITY View Gene Set 5.086e-05 97 0.001831 11 Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. www.broad.mit.e...
Broad METHYLTRANSFERASE_ACTIVITY View Gene Set 6.305e-05 36 0.002081 12 Genes annotated by the GO term GO:0008168. Catalysis of the transfer of a methyl group to an acceptor molecule. www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM View Gene Set 7.57e-05 14 0.002141 13 Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced. www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING View Gene Set 7.267e-05 55 0.002141 13 Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding. www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING View Gene Set 8.266e-05 32 0.002182 15 Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA. www.broad.mit.e...
Broad ATPASE_ACTIVITY View Gene Set 8.899e-05 109 0.002203 16 Genes annotated by the GO term GO:0016887. Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_ONE_CARBON_GROUPS View Gene Set 0.0001075 37 0.002505 17 Genes annotated by the GO term GO:0016741. Catalysis of the transfer of a one-carbon group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad RNA_POLYMERASE_ACTIVITY View Gene Set 0.0001344 16 0.002957 18 Genes annotated by the GO term GO:0034062. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template. www.broad.mit.e...
Broad RNA_HELICASE_ACTIVITY View Gene Set 0.0002685 24 0.005596 19 Genes annotated by the GO term GO:0003724. Catalysis of the unwinding of an RNA helix. www.broad.mit.e...
Broad DNA_HELICASE_ACTIVITY View Gene Set 0.0008292 24 0.01642 20 Genes annotated by the GO term GO:0003678. Catalysis of the unwinding of a DNA duplex. www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING View Gene Set 0.001002 34 0.0189 21 Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA. www.broad.mit.e...
Broad MRNA_BINDING View Gene Set 0.001587 22 0.02856 22 Genes annotated by the GO term GO:0003729. Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA). www.broad.mit.e...
Broad CHROMATIN_BINDING View Gene Set 0.001847 32 0.03179 23 Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase. www.broad.mit.e...
Broad UNFOLDED_PROTEIN_BINDING View Gene Set 0.002108 41 0.03479 24 Genes annotated by the GO term GO:0051082. Interacting selectively with an unfolded protein. www.broad.mit.e...
Broad NUCLEASE_ACTIVITY View Gene Set 0.002268 54 0.03593 25 Genes annotated by the GO term GO:0004518. Catalysis of the hydrolysis of ester linkages within nucleic acids. www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS View Gene Set 0.002826 68 0.04257 26 Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad ATPASE_ACTIVITY_COUPLED View Gene Set 0.002902 92 0.04257 26 Genes annotated by the GO term GO:0042623. Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive some other reaction for example ion transport across a membrane. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 1.02e-43 421 2.557e-40 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 2.093e-36 773 2.624e-33 2 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 2.9e-32 106 2.424e-29 3 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 4.576e-26 208 2.868e-23 4 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 3.067e-25 391 1.538e-22 5 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 5.858e-21 108 2.448e-18 6 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 2.049e-19 504 7.338e-17 7 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 1.926e-15 210 6.037e-13 8 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 4.118e-15 74 1.147e-12 9 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 14657027 View Gene Set 4.899e-15 74 1.228e-12 10 Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter. www.ncbi.nlm.ni...
PMID 9566873 View Gene Set 2.315e-14 74 5.275e-12 11 Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 4.268e-14 51 8.917e-12 12 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 11689053 View Gene Set 6.98e-14 70 1.346e-11 13 Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA. www.ncbi.nlm.ni...
PMID 11080476 View Gene Set 1.222e-13 87 2.189e-11 14 Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 3.244e-13 182 5.083e-11 15 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 3.083e-13 212 5.083e-11 15 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 20085707 View Gene Set 1.757e-12 42 2.59e-10 17 Aire's partners in the molecular control of immunological tolerance. www.ncbi.nlm.ni...
PMID 12408966 View Gene Set 4.92e-12 76 6.852e-10 18 The human and mouse replication-dependent histone genes. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 2.692e-11 58 3.553e-09 19 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 9439656 View Gene Set 4.852e-11 55 6.082e-09 20 The human histone gene cluster at the D6S105 locus. www.ncbi.nlm.ni...
PMID 15782174 View Gene Set 6.25e-11 31 7.461e-09 21 Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 5.163e-10 24 5.883e-08 22 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 1.781e-09 31 1.941e-07 23 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 3.223e-09 22 3.367e-07 24 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 17148452 View Gene Set 7.642e-08 87 7.664e-06 25 Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2. www.ncbi.nlm.ni...
PMID 14743216 View Gene Set 8.921e-08 132 8.338e-06 26 A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. www.ncbi.nlm.ni...
PMID 9119399 View Gene Set 8.98e-08 35 8.338e-06 26 Human histone gene organization: nonregular arrangement within a large cluster. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 1.083e-07 317 9.694e-06 28 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 12228227 View Gene Set 2.389e-07 30 2.066e-05 29 Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1. www.ncbi.nlm.ni...
PMID 16236267 View Gene Set 3.668e-07 77 3.066e-05 30 Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress. www.ncbi.nlm.ni...
PMID 16713563 View Gene Set 3.989e-07 19 3.125e-05 31 Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. www.ncbi.nlm.ni...
PMID 16916647 View Gene Set 3.915e-07 76 3.125e-05 31 Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. www.ncbi.nlm.ni...
PMID 8590280 View Gene Set 5.565e-07 41 4.228e-05 33 Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 10601273 View Gene Set 6.953e-07 21 5.127e-05 34 Nuclear import of hepatic glucokinase depends upon glucokinase regulatory protein whereas export is due to a nuclear export signal sequence in glucokinase. www.ncbi.nlm.ni...
PMID 11279123 View Gene Set 1.128e-06 31 7.917e-05 35 The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 16319397 View Gene Set 1.137e-06 20 7.917e-05 35 Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry. www.ncbi.nlm.ni...
PMID 16307923 View Gene Set 1.35e-06 23 9.146e-05 37 Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. www.ncbi.nlm.ni...
PMID 16283522 View Gene Set 1.543e-06 18 0.0001018 38 Inhibition of core histones acetylation by carcinogenic nickel(II). www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 2.313e-06 34 0.0001487 39 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 15130578 View Gene Set 3.536e-06 22 0.0002216 40 Why do cells need an assembly machine for RNA-protein complexes? www.ncbi.nlm.ni...
PMID 18063578 View Gene Set 3.718e-06 31 0.0002274 41 The layered structure of human mitochondrial DNA nucleoids. www.ncbi.nlm.ni...
PMID 12757711 View Gene Set 4.906e-06 18 0.0002929 42 Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase. www.ncbi.nlm.ni...
PMID 16627869 View Gene Set 6.201e-06 17 0.0003615 43 Quantitative proteomic analysis of post-translational modifications of human histones. www.ncbi.nlm.ni...
PMID 9150948 View Gene Set 6.414e-06 15 0.0003654 44 A two-dimensional gel database of human colon carcinoma proteins. www.ncbi.nlm.ni...
PMID 11829477 View Gene Set 1.402e-05 13 0.0007811 45 Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex. www.ncbi.nlm.ni...
PMID 20496165 View Gene Set 1.451e-05 68 0.0007909 46 Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. www.ncbi.nlm.ni...
PMID 12045100 View Gene Set 1.637e-05 18 0.0008733 47 DNA replication in eukaryotic cells. www.ncbi.nlm.ni...
PMID 11076961 View Gene Set 1.865e-05 14 0.0009743 48 Characterization of vertebrate cohesin complexes and their regulation in prophase. www.ncbi.nlm.ni...
PMID 15823041 View Gene Set 1.955e-05 13 0.001 49 Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes. www.ncbi.nlm.ni...
PMID 11157797 View Gene Set 2.553e-05 76 0.00128 50 Sequence structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. www.ncbi.nlm.ni...
PMID 17363900 View Gene Set 3.656e-05 14 0.001797 51 The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. www.ncbi.nlm.ni...
PMID 1916825 View Gene Set 3.758e-05 13 0.001812 52 Isolation and characterization of two human H1 histone genes within clusters of core histone genes. www.ncbi.nlm.ni...
PMID 10064132 View Gene Set 3.912e-05 14 0.001816 53 The human H2A and H2B histone gene complement. www.ncbi.nlm.ni...
PMID 18954305 View Gene Set 3.886e-05 13 0.001816 53 Structural basis and specificity of human otubain 1-mediated deubiquitination. www.ncbi.nlm.ni...
PMID 14519125 View Gene Set 4.664e-05 12 0.002103 55 Characterization of eIF3k: a newly discovered subunit of mammalian translation initiation factor elF3. www.ncbi.nlm.ni...
PMID 15146077 View Gene Set 4.791e-05 32 0.002103 55 The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. www.ncbi.nlm.ni...
PMID 15461802 View Gene Set 4.839e-05 293 0.002103 55 A genome annotation-driven approach to cloning the human ORFeome. www.ncbi.nlm.ni...
PMID 20508983 View Gene Set 4.865e-05 102 0.002103 55 Centrosome-related genes genetic variation and risk of breast cancer. www.ncbi.nlm.ni...
PMID 1574589 View Gene Set 5.125e-05 11 0.002178 59 De novo purine nucleotide biosynthesis. www.ncbi.nlm.ni...
PMID 11060040 View Gene Set 5.82e-05 15 0.0022 60 Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. www.ncbi.nlm.ni...
PMID 11551941 View Gene Set 5.607e-05 26 0.0022 60 The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 11714285 View Gene Set 6.493e-05 11 0.0022 60 The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function. www.ncbi.nlm.ni...
PMID 12791985 View Gene Set 6.037e-05 37 0.0022 60 Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. www.ncbi.nlm.ni...
PMID 15078818 View Gene Set 6.075e-05 11 0.0022 60 Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo. www.ncbi.nlm.ni...
PMID 15196461 View Gene Set 5.497e-05 11 0.0022 60 The highly conserved and multifunctional NuA4 HAT complex. www.ncbi.nlm.ni...
PMID 16055448 View Gene Set 6.493e-05 11 0.0022 60 The C-terminal appended domain of human cytosolic leucyl-tRNA synthetase is indispensable in its interaction with arginyl-tRNA synthetase in the multi-tRNA synthetase complex. www.ncbi.nlm.ni...
PMID 16702407 View Gene Set 6.075e-05 11 0.0022 60 DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A. www.ncbi.nlm.ni...
PMID 17289661 View Gene Set 5.298e-05 35 0.0022 60 Molecular composition of IMP1 ribonucleoprotein granules. www.ncbi.nlm.ni...
PMID 19237606 View Gene Set 5.711e-05 84 0.0022 60 Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk. www.ncbi.nlm.ni...
PMID 8052601 View Gene Set 6.493e-05 11 0.0022 60 Human cytoplasmic isoleucyl-tRNA synthetase: selective divergence of the anticodon-binding domain and acquisition of a new structural unit. www.ncbi.nlm.ni...
PMID 8078941 View Gene Set 6.493e-05 11 0.0022 60 Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer. www.ncbi.nlm.ni...
PMID 8188258 View Gene Set 6.493e-05 11 0.0022 60 The human EPRS locus (formerly the QARS locus): a gene encoding a class I and a class II aminoacyl-tRNA synthetase. www.ncbi.nlm.ni...
PMID 8449960 View Gene Set 6.493e-05 11 0.0022 60 Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix. www.ncbi.nlm.ni...
PMID 9278442 View Gene Set 6.493e-05 11 0.0022 60 Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant. www.ncbi.nlm.ni...
PMID 11095689 View Gene Set 7.719e-05 17 0.00258 75 The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. www.ncbi.nlm.ni...
PMID 15010469 View Gene Set 7.994e-05 15 0.002637 76 Phosphorylation of histone H2A inhibits transcription on chromatin templates. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 9.074e-05 48 0.002954 77 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 12628926 View Gene Set 9.817e-05 15 0.003155 78 Purification and functional characterization of the human N-CoR complex: the roles of HDAC3 TBL1 and TBLR1. www.ncbi.nlm.ni...
PMID 15707391 View Gene Set 0.0001113 23 0.003531 79 DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system. www.ncbi.nlm.ni...
PMID 11101529 View Gene Set 0.0001154 34 0.003617 80 Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 0.0001212 242 0.00375 81 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 12588972 View Gene Set 0.0001243 56 0.0038 82 Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region. www.ncbi.nlm.ni...
PMID 17456004 View Gene Set 0.0001308 17 0.003952 83 Selective translational repression of truncated proteins from frameshift mutation-derived mRNAs in tumors. www.ncbi.nlm.ni...
PMID 10783165 View Gene Set 0.0001405 12 0.004192 84 BASC a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures. www.ncbi.nlm.ni...
PMID 11719186 View Gene Set 0.0001507 17 0.00434 85 AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. www.ncbi.nlm.ni...
PMID 7788527 View Gene Set 0.000151 42 0.00434 85 Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 8995409 View Gene Set 0.0001541 11 0.00434 85 Conservation and diversity of eukaryotic translation initiation factor eIF3. www.ncbi.nlm.ni...
PMID 8995410 View Gene Set 0.0001541 10 0.00434 85 The human homologue of the yeast Prt1 protein is an integral part of the eukaryotic initiation factor 3 complex and interacts with p170. www.ncbi.nlm.ni...
PMID 9822659 View Gene Set 0.0001474 11 0.00434 85 Characterization of cDNAs encoding the p44 and p35 subunits of human translation initiation factor eIF3. www.ncbi.nlm.ni...
PMID 12614612 View Gene Set 0.0001619 19 0.00451 90 Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells. www.ncbi.nlm.ni...
PMID 15456888 View Gene Set 0.0001791 24 0.004935 91 The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo. www.ncbi.nlm.ni...
PMID 9472028 View Gene Set 0.0001828 12 0.004982 92 SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells. www.ncbi.nlm.ni...
PMID 17322308 View Gene Set 0.0001907 13 0.005087 93 Structural characterization of the human eukaryotic initiation factor 3 protein complex by mass spectrometry. www.ncbi.nlm.ni...
PMID 18599441 View Gene Set 0.0001907 13 0.005087 93 Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3. www.ncbi.nlm.ni...
PMID 11402041 View Gene Set 0.0001951 16 0.005148 95 Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit. www.ncbi.nlm.ni...
PMID 15386022 View Gene Set 0.0002092 16 0.005464 96 Role of histone H2A ubiquitination in Polycomb silencing. www.ncbi.nlm.ni...
PMID 10436018 View Gene Set 0.0002264 15 0.005852 97 The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells. www.ncbi.nlm.ni...
PMID 11877377 View Gene Set 0.0002323 11 0.005943 98 SMC1 is a downstream effector in the ATM/NBS1 branch of the human S-phase checkpoint. www.ncbi.nlm.ni...
PMID 12837248 View Gene Set 0.0002362 22 0.005981 99 The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome. www.ncbi.nlm.ni...
PMID 11285280 View Gene Set 0.0003037 62 0.007613 100 Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. www.ncbi.nlm.ni...
PMID 16359901 View Gene Set 0.0003125 14 0.007757 101 Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing. www.ncbi.nlm.ni...
PMID 12393188 View Gene Set 0.0003408 15 0.008376 102 Ku antigen an origin-specific binding protein that associates with replication proteins is required for mammalian DNA replication. www.ncbi.nlm.ni...
PMID 20516191 View Gene Set 0.0003536 12 0.008607 103 A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). www.ncbi.nlm.ni...
PMID 18715871 View Gene Set 0.0003571 20 0.008608 104 PP4R4/KIAA1622 forms a novel stable cytosolic complex with phosphoprotein phosphatase 4. www.ncbi.nlm.ni...
PMID 15226314 View Gene Set 0.0003746 20 0.008649 105 Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures. www.ncbi.nlm.ni...
PMID 15232106 View Gene Set 0.0003636 30 0.008649 105 Self-assembling protein microarrays. www.ncbi.nlm.ni...
PMID 15616553 View Gene Set 0.000376 80 0.008649 105 The sequence and analysis of duplication-rich human chromosome 16. www.ncbi.nlm.ni...
PMID 15960975 View Gene Set 0.0003715 28 0.008649 105 Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. www.ncbi.nlm.ni...
PMID 20522537 View Gene Set 0.000368 73 0.008649 105 Variation within DNA repair pathway genes and risk of multiple sclerosis. www.ncbi.nlm.ni...
PMID 14532270 View Gene Set 0.0003886 12 0.008856 110 A product of the human gene adjacent to parkin is a component of Lewy bodies and suppresses Pael receptor-induced cell death. www.ncbi.nlm.ni...
PMID 20226869 View Gene Set 0.0004045 25 0.009135 111 Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations. www.ncbi.nlm.ni...
PMID 19270065 View Gene Set 0.00051 11 0.01142 112 MRE11 complex links RECQ5 helicase to sites of DNA damage. www.ncbi.nlm.ni...
PMID 10531003 View Gene Set 0.0005309 15 0.01168 113 Newly assembled snRNPs associate with coiled bodies before speckles suggesting a nuclear snRNP maturation pathway. www.ncbi.nlm.ni...
PMID 17581632 View Gene Set 0.000528 11 0.01168 113 Reconstitution reveals the functional core of mammalian eIF3. www.ncbi.nlm.ni...
PMID 12391170 View Gene Set 0.0005632 18 0.01228 115 Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. www.ncbi.nlm.ni...
PMID 11242053 View Gene Set 0.0006032 12 0.01304 116 Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. www.ncbi.nlm.ni...
PMID 11500380 View Gene Set 0.0006096 10 0.01306 117 A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site. www.ncbi.nlm.ni...
PMID 11713266 View Gene Set 0.0007045 12 0.01497 118 The methylosome a 20S complex containing JBP1 and pICln produces dimethylarginine-modified Sm proteins. www.ncbi.nlm.ni...
PMID 1403646 View Gene Set 0.0007505 17 0.01581 119 The human immunodeficiency virus tat protein increases the transcription of human Alu repeated sequences by increasing the activity of the cellular transcription factor TFIIIC. www.ncbi.nlm.ni...
PMID 17203305 View Gene Set 0.0007949 12 0.01661 120 Genetic variation in the base excision repair pathway and bladder cancer risk. www.ncbi.nlm.ni...
PMID 15029244 View Gene Set 0.0008099 57 0.01678 121 Mammalian Cdh1/Fzr mediates its own degradation. www.ncbi.nlm.ni...
PMID 15146057 View Gene Set 0.0009524 10 0.01957 122 The entire Nup107-160 complex including three new members is targeted as one entity to kinetochores in mitosis. www.ncbi.nlm.ni...
PMID 19839995 View Gene Set 0.0009639 21 0.01965 123 Association study of 21 circadian genes with bipolar I disorder schizoaffective disorder and schizophrenia. www.ncbi.nlm.ni...
PMID 8724849 View Gene Set 0.001023 41 0.02053 124 Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 9222609 View Gene Set 0.001018 10 0.02053 124 A pathway of multi-chaperone interactions common to diverse regulatory proteins: estrogen receptor Fes tyrosine kinase heat shock transcription factor Hsf1 and the aryl hydrocarbon receptor. www.ncbi.nlm.ni...
PMID 10983978 View Gene Set 0.00108 10 0.02149 126 Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1. www.ncbi.nlm.ni...
PMID 11279069 View Gene Set 0.001097 15 0.02165 127 Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. www.ncbi.nlm.ni...
PMID 11310559 View Gene Set 0.001133 17 0.02219 128 Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 0.001145 58 0.02225 129 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...
PMID 19405953 View Gene Set 0.001298 25 0.02503 130 Proteome analysis of schizophrenia patients Wernicke's area reveals an energy metabolism dysregulation. www.ncbi.nlm.ni...
PMID 12073013 View Gene Set 0.001395 11 0.02669 131 Identification of additional transcripts in the Williams-Beuren syndrome critical region. www.ncbi.nlm.ni...
PMID 9878398 View Gene Set 0.001528 13 0.02902 132 Macromolecular assemblage of aminoacyl-tRNA synthetases: identification of protein-protein interactions and characterization of a core protein. www.ncbi.nlm.ni...
PMID 16239144 View Gene Set 0.001738 16 0.03267 133 Integrator a multiprotein mediator of small nuclear RNA processing associates with the C-terminal repeat of RNA polymerase II. www.ncbi.nlm.ni...
PMID 19047128 View Gene Set 0.001746 19 0.03267 133 Single nucleotide polymorphisms of microRNA machinery genes modify the risk of renal cell carcinoma. www.ncbi.nlm.ni...
PMID 9562972 View Gene Set 0.001795 11 0.03334 135 HIV-1 nuclear import: matrix protein is back on center stage this time together with Vpr. www.ncbi.nlm.ni...
PMID 14966270 View Gene Set 0.001812 19 0.0334 136 Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans. www.ncbi.nlm.ni...
PMID 11535616 View Gene Set 0.00184 18 0.03343 137 Checkpoint inhibition of the APC/C in HeLa cells is mediated by a complex of BUBR1 BUB3 CDC20 and MAD2. www.ncbi.nlm.ni...
PMID 14593737 View Gene Set 0.00184 18 0.03343 137 The mitotic checkpoint: a signaling pathway that allows a single unattached kinetochore to inhibit mitotic exit. www.ncbi.nlm.ni...
PMID 11714716 View Gene Set 0.001886 13 0.03402 139 Gemin5 a novel WD repeat protein component of the SMN complex that binds Sm proteins. www.ncbi.nlm.ni...
PMID 7273846 View Gene Set 0.001908 12 0.03417 140 The glucose-lactic acid cycle and gluconeogenesis. www.ncbi.nlm.ni...
PMID 11812149 View Gene Set 0.001939 13 0.03448 141 Protein-protein interactions of hCsl4p with other human exosome subunits. www.ncbi.nlm.ni...
PMID 10318877 View Gene Set 0.001976 10 0.03464 142 Characterization of the DOC1/APC10 subunit of the yeast and the human anaphase-promoting complex. www.ncbi.nlm.ni...
PMID 10725331 View Gene Set 0.001966 14 0.03464 142 Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli. www.ncbi.nlm.ni...
PMID 12486001 View Gene Set 0.002135 15 0.03621 144 HIV-1 Tat targets microtubules to induce apoptosis a process promoted by the pro-apoptotic Bcl-2 relative Bim. www.ncbi.nlm.ni...
PMID 15527963 View Gene Set 0.002095 11 0.03621 144 Functional characterization of a human histone gene cluster duplication. www.ncbi.nlm.ni...
PMID 15644312 View Gene Set 0.002137 10 0.03621 144 Dissection of the mitochondrial import and assembly pathway for human Tom40. www.ncbi.nlm.ni...
PMID 15647280 View Gene Set 0.00211 17 0.03621 144 The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes. www.ncbi.nlm.ni...
PMID 16713569 View Gene Set 0.002132 570 0.03621 144 A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. www.ncbi.nlm.ni...
PMID 10608806 View Gene Set 0.002334 25 0.03922 149 Substrate specificities and identification of putative substrates of ATM kinase family members. www.ncbi.nlm.ni...
PMID 18830263 View Gene Set 0.002347 36 0.03922 149 Polymorphisms in DNA repair and one-carbon metabolism genes and overall survival in diffuse large B-cell lymphoma and follicular lymphoma. www.ncbi.nlm.ni...
PMID 16678110 View Gene Set 0.002379 10 0.0395 151 Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage. www.ncbi.nlm.ni...
PMID 17577209 View Gene Set 0.0024 28 0.03959 152 The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing. www.ncbi.nlm.ni...
PMID 19450687 View Gene Set 0.002447 11 0.0401 153 High-resolution mapping of the protein interaction network for the human transcription machinery and affinity purification of RNA polymerase II-associated complexes. www.ncbi.nlm.ni...
PMID 12388589 View Gene Set 0.002488 17 0.04025 154 A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. www.ncbi.nlm.ni...
PMID 15498874 View Gene Set 0.002475 113 0.04025 154 Large-scale cDNA transfection screening for genes related to cancer development and progression. www.ncbi.nlm.ni...
PMID 11799066 View Gene Set 0.002528 21 0.04062 156 Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. www.ncbi.nlm.ni...
PMID 17891500 View Gene Set 0.002566 10 0.04097 157 One-carbon metabolism gene polymorphisms and risk of non-Hodgkin lymphoma in Australia. www.ncbi.nlm.ni...
PMID 12419256 View Gene Set 0.002612 12 0.04118 158 Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring. www.ncbi.nlm.ni...
PMID 17220478 View Gene Set 0.002605 63 0.04118 158 Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells. www.ncbi.nlm.ni...
PMID 12786946 View Gene Set 0.002741 10 0.04295 160 Terminal deoxynucleotidyltransferase forms a ternary complex with a novel chromatin remodeling protein with 82 kDa and core histone. www.ncbi.nlm.ni...
PMID 15009096 View Gene Set 0.003012 39 0.0469 161 Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase. www.ncbi.nlm.ni...
PMID 15779907 View Gene Set 0.0031 12 0.04798 162 Toward the full set of human mitochondrial aminoacyl-tRNA synthetases: characterization of AspRS and TyrRS. www.ncbi.nlm.ni...
PMID 11931757 View Gene Set 0.003122 22 0.04801 163 Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr16_0-5Mb View Gene Set 3.563e-07 113 0.0002026 1 Genomic tile: chr16 ; 1-5000001 Mb genome.ucsc.edu...
Null chr19_0-5Mb View Gene Set 3.637e-07 105 0.0002026 1 Genomic tile: chr19 ; 1-5000001 Mb genome.ucsc.edu...
Null chr17_80-85Mb View Gene Set 6.53e-07 37 0.0002425 3 Genomic tile: chr17 ; 80000001-85000001 Mb genome.ucsc.edu...
Null chr17_77.5-82.5Mb View Gene Set 1.786e-06 54 0.0004975 4 Genomic tile: chr17 ; 77500001-82500001 Mb genome.ucsc.edu...
Null chr16_85-90Mb View Gene Set 7.09e-06 43 0.00158 5 Genomic tile: chr16 ; 85000001-90000001 Mb genome.ucsc.edu...
Null chr16_87.5-92.5Mb View Gene Set 4.879e-05 32 0.009058 6 Genomic tile: chr16 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chr11_65-70Mb View Gene Set 6.094e-05 90 0.009698 7 Genomic tile: chr11 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr11_62.5-67.5Mb View Gene Set 0.0001013 119 0.01336 8 Genomic tile: chr11 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr12_120-125Mb View Gene Set 0.0001259 44 0.01336 8 Genomic tile: chr12 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr16_67.5-72.5Mb View Gene Set 0.0001439 51 0.01336 8 Genomic tile: chr16 ; 67500001-72500001 Mb genome.ucsc.edu...
Null chr19_35-40Mb View Gene Set 0.000124 25 0.01336 8 Genomic tile: chr19 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr9_132.5-137.5Mb View Gene Set 0.0001337 53 0.01336 8 Genomic tile: chr9 ; 132500001-137500001 Mb genome.ucsc.edu...
Null chr9_135-140Mb View Gene Set 0.0002644 30 0.02266 13 Genomic tile: chr9 ; 135000001-140000001 Mb genome.ucsc.edu...
Null chr9_125-130Mb View Gene Set 0.0003766 72 0.02997 14 Genomic tile: chr9 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr17_0-5Mb View Gene Set 0.0004746 65 0.03525 15 Genomic tile: chr17 ; 1-5000001 Mb genome.ucsc.edu...
Null chr9_127.5-132.5Mb View Gene Set 0.0005656 38 0.03938 16 Genomic tile: chr9 ; 127500001-132500001 Mb genome.ucsc.edu...
Null chr3_45-50Mb View Gene Set 0.0006495 72 0.04256 17 Genomic tile: chr3 ; 45000001-50000001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 5.659e-17 229 4.16e-14 1 RRM expasy.org/pros...
Null PS00357 View Gene Set 8.358e-08 19 3.072e-05 2 HISTONE_H2B expasy.org/pros...
Null PS51194 View Gene Set 2.973e-07 113 7.285e-05 3 HELICASE_CTER expasy.org/pros...
Null PS51192 View Gene Set 9.937e-07 112 0.0001826 4 HELICASE_ATP_BIND_1 expasy.org/pros...
Null PS51195 View Gene Set 1.735e-06 37 0.0002551 5 Q_MOTIF expasy.org/pros...
Null PS50862 View Gene Set 5.774e-06 18 0.0007073 6 AA_TRNA_LIGASE_II expasy.org/pros...
Null PS50082 View Gene Set 1.675e-05 233 0.001759 7 WD_REPEATS_2 expasy.org/pros...
Null PS00178 View Gene Set 3.026e-05 15 0.00278 8 AA_TRNA_LIGASE_I expasy.org/pros...
Null PS50294 View Gene Set 4.077e-05 245 0.00333 9 WD_REPEATS_REGION expasy.org/pros...
Null PS00750 View Gene Set 5.92e-05 9 0.003347 10 TCP1_1 expasy.org/pros...
Null PS00751 View Gene Set 5.92e-05 9 0.003347 10 TCP1_2 expasy.org/pros...
Null PS00847 View Gene Set 5.484e-05 6 0.003347 10 MCM_1 expasy.org/pros...
Null PS00995 View Gene Set 5.92e-05 9 0.003347 10 TCP1_3 expasy.org/pros...
Null PS00678 View Gene Set 8.23e-05 168 0.004321 14 WD_REPEATS_1 expasy.org/pros...
Null PS00039 View Gene Set 0.0002986 27 0.01372 15 DEAD_ATP_HELICASE expasy.org/pros...
Null PS00047 View Gene Set 0.0002833 14 0.01372 15 HISTONE_H4 expasy.org/pros...
Null PS50166 View Gene Set 0.000324 13 0.01401 17 IMPORTIN_B_NT expasy.org/pros...
Null PS00046 View Gene Set 0.0003831 21 0.01564 18 HISTONE_H2A expasy.org/pros...
Null PS50051 View Gene Set 0.000745 8 0.02738 19 MCM_2 expasy.org/pros...
Null PS50174 View Gene Set 0.000709 25 0.02738 19 G_PATCH expasy.org/pros...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SNORD3A View Gene Set 0.0001344 9 0.02541 1 Protein-protein-interaction for SNORD3A www.ncbi.nlm.ni...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 2.804e-29 236 6.441e-26 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 7.288e-15 147 8.371e-12 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 5.001e-11 101 3.829e-08 3 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 1.724e-09 35 9.9e-07 4 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 1.143e-08 64 5.252e-06 5 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 3.566e-08 15 1.365e-05 6 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 1.191e-07 38 3.64e-05 7 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.RPA2 View Gene Set 1.296e-07 24 3.64e-05 7 Protein-protein-interaction for RPA2 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 1.426e-07 37 3.64e-05 7 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.USP36 View Gene Set 3.885e-07 17 8.923e-05 10 Protein-protein-interaction for USP36 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 4.74e-07 23 9.073e-05 11 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.EIF3F View Gene Set 4.723e-07 22 9.073e-05 11 Protein-protein-interaction for EIF3F www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 6.716e-07 42 0.0001187 13 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 9.752e-07 50 0.00016 14 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 1.671e-06 53 0.0002558 15 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.USP39 View Gene Set 4.466e-06 15 0.0006411 16 Protein-protein-interaction for USP39 www.ncbi.nlm.ni...
Null ppi.EIF3H View Gene Set 5.055e-06 16 0.0006831 17 Protein-protein-interaction for EIF3H www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 6.674e-06 12 0.0008517 18 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.HIST1H4A View Gene Set 7.508e-06 28 0.0009076 19 Protein-protein-interaction for HIST1H4A www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 8.064e-06 21 0.0009262 20 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.U2AF2 View Gene Set 9.856e-06 14 0.001078 21 Protein-protein-interaction for U2AF2 www.ncbi.nlm.ni...
Null ppi.XRCC5 View Gene Set 1.224e-05 40 0.001278 22 Protein-protein-interaction for XRCC5 www.ncbi.nlm.ni...
Null ppi.SUPT16H View Gene Set 1.462e-05 11 0.001461 23 Protein-protein-interaction for SUPT16H www.ncbi.nlm.ni...
Null ppi.GPN1 View Gene Set 1.609e-05 27 0.00154 24 Protein-protein-interaction for GPN1 www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 1.837e-05 38 0.001688 25 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.PRMT5 View Gene Set 2.132e-05 31 0.001884 26 Protein-protein-interaction for PRMT5 www.ncbi.nlm.ni...
Null ppi.WDR48 View Gene Set 2.941e-05 52 0.002502 27 Protein-protein-interaction for WDR48 www.ncbi.nlm.ni...
Null ppi.EIF3B View Gene Set 3.883e-05 10 0.003185 28 Protein-protein-interaction for EIF3B www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 4.184e-05 46 0.003314 29 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.GIGYF2 View Gene Set 4.963e-05 17 0.003582 30 Protein-protein-interaction for GIGYF2 www.ncbi.nlm.ni...
Null ppi.RNU12-2P View Gene Set 4.991e-05 18 0.003582 30 Protein-protein-interaction for RNU12-2P www.ncbi.nlm.ni...
Null ppi.RNU11 View Gene Set 4.991e-05 18 0.003582 30 Protein-protein-interaction for RNU11 www.ncbi.nlm.ni...
Null ppi.TERF2 View Gene Set 5.548e-05 9 0.003748 33 Protein-protein-interaction for TERF2 www.ncbi.nlm.ni...
Null ppi.WDR77 View Gene Set 5.394e-05 15 0.003748 33 Protein-protein-interaction for WDR77 www.ncbi.nlm.ni...
Null ppi.ZNF496 View Gene Set 6.48e-05 13 0.004253 35 Protein-protein-interaction for ZNF496 www.ncbi.nlm.ni...
Null ppi.CBX3 View Gene Set 7.118e-05 23 0.004542 36 Protein-protein-interaction for CBX3 www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 8.077e-05 33 0.005014 37 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.MED13 View Gene Set 8.704e-05 10 0.005261 38 Protein-protein-interaction for MED13 www.ncbi.nlm.ni...
Null ppi.SNUPN View Gene Set 9.331e-05 10 0.005417 39 Protein-protein-interaction for SNUPN www.ncbi.nlm.ni...
Null ppi.RNMTL1 View Gene Set 9.434e-05 8 0.005417 39 Protein-protein-interaction for RNMTL1 www.ncbi.nlm.ni...
Null ppi.HSPA8 View Gene Set 0.0001075 21 0.005879 41 Protein-protein-interaction for HSPA8 www.ncbi.nlm.ni...
Null ppi.EIF3G View Gene Set 0.0001055 8 0.005879 41 Protein-protein-interaction for EIF3G www.ncbi.nlm.ni...
Null ppi.BAZ1B View Gene Set 0.0001132 30 0.006049 43 Protein-protein-interaction for BAZ1B www.ncbi.nlm.ni...
Null ppi.PRPF8 View Gene Set 0.000134 12 0.006994 44 Protein-protein-interaction for PRPF8 www.ncbi.nlm.ni...
Null ppi.RALYL View Gene Set 0.0001442 12 0.007046 45 Protein-protein-interaction for RALYL www.ncbi.nlm.ni...
Null ppi.PDS5A View Gene Set 0.0001429 6 0.007046 45 Protein-protein-interaction for PDS5A www.ncbi.nlm.ni...
Null ppi.RPAP3 View Gene Set 0.000142 29 0.007046 45 Protein-protein-interaction for RPAP3 www.ncbi.nlm.ni...
Null ppi.DMAP1 View Gene Set 0.0001515 13 0.007249 48 Protein-protein-interaction for DMAP1 www.ncbi.nlm.ni...
Null ppi.WRN View Gene Set 0.0001572 14 0.007368 49 Protein-protein-interaction for WRN www.ncbi.nlm.ni...
Null ppi.THAP7 View Gene Set 0.0001677 12 0.007703 50 Protein-protein-interaction for THAP7 www.ncbi.nlm.ni...
Null ppi.NXF1 View Gene Set 0.0001785 9 0.007887 51 Protein-protein-interaction for NXF1 www.ncbi.nlm.ni...
Null ppi.WWOX View Gene Set 0.0001768 19 0.007887 51 Protein-protein-interaction for WWOX www.ncbi.nlm.ni...
Null ppi.USP42 View Gene Set 0.0001927 24 0.008352 53 Protein-protein-interaction for USP42 www.ncbi.nlm.ni...
Null ppi.ZBTB9 View Gene Set 0.0002209 16 0.00906 54 Protein-protein-interaction for ZBTB9 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 0.0002171 40 0.00906 54 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.NAA38 View Gene Set 0.0002163 21 0.00906 54 Protein-protein-interaction for NAA38 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 0.0002281 9 0.009191 57 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.KEAP1 View Gene Set 0.0002601 21 0.0103 58 Protein-protein-interaction for KEAP1 www.ncbi.nlm.ni...
Null ppi.MCM6 View Gene Set 0.0002703 6 0.01035 59 Protein-protein-interaction for MCM6 www.ncbi.nlm.ni...
Null ppi.POLR1C View Gene Set 0.0002695 6 0.01035 59 Protein-protein-interaction for POLR1C www.ncbi.nlm.ni...
Null ppi.SRPK2 View Gene Set 0.0002788 7 0.0105 61 Protein-protein-interaction for SRPK2 www.ncbi.nlm.ni...
Null ppi.ASCC2 View Gene Set 0.0002916 36 0.0108 62 Protein-protein-interaction for ASCC2 www.ncbi.nlm.ni...
Null ppi.SF3B1 View Gene Set 0.000311 24 0.01129 63 Protein-protein-interaction for SF3B1 www.ncbi.nlm.ni...
Null ppi.TP53BP1 View Gene Set 0.0003145 13 0.01129 63 Protein-protein-interaction for TP53BP1 www.ncbi.nlm.ni...
Null ppi.XRN1 View Gene Set 0.0003509 12 0.0124 65 Protein-protein-interaction for XRN1 www.ncbi.nlm.ni...
Null ppi.PTCD3 View Gene Set 0.000385 6 0.01321 66 Protein-protein-interaction for PTCD3 www.ncbi.nlm.ni...
Null ppi.855836 View Gene Set 0.0003854 8 0.01321 66 Protein-protein-interaction for 855836 www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 0.0004707 64 0.01526 68 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.USP50 View Gene Set 0.0004644 22 0.01526 68 Protein-protein-interaction for USP50 www.ncbi.nlm.ni...
Null ppi.HDAC3 View Gene Set 0.0004559 92 0.01526 68 Protein-protein-interaction for HDAC3 www.ncbi.nlm.ni...
Null ppi.RBM8A View Gene Set 0.0004717 7 0.01526 68 Protein-protein-interaction for RBM8A www.ncbi.nlm.ni...
Null ppi.GAR1 View Gene Set 0.0005053 9 0.01612 72 Protein-protein-interaction for GAR1 www.ncbi.nlm.ni...
Null ppi.MRE11A View Gene Set 0.0005471 13 0.01655 73 Protein-protein-interaction for MRE11A www.ncbi.nlm.ni...
Null ppi.MED1 View Gene Set 0.0005573 20 0.01655 73 Protein-protein-interaction for MED1 www.ncbi.nlm.ni...
Null ppi.STAT1 View Gene Set 0.0005444 31 0.01655 73 Protein-protein-interaction for STAT1 www.ncbi.nlm.ni...
Null ppi.RPAP2 View Gene Set 0.0005521 43 0.01655 73 Protein-protein-interaction for RPAP2 www.ncbi.nlm.ni...
Null ppi.CDC45 View Gene Set 0.0005619 9 0.01655 73 Protein-protein-interaction for CDC45 www.ncbi.nlm.ni...
Null ppi.SUV420H2 View Gene Set 0.0005285 10 0.01655 73 Protein-protein-interaction for SUV420H2 www.ncbi.nlm.ni...
Null ppi.SF3A3 View Gene Set 0.0005862 7 0.01662 79 Protein-protein-interaction for SF3A3 www.ncbi.nlm.ni...
Null ppi.GAS7 View Gene Set 0.0005817 10 0.01662 79 Protein-protein-interaction for GAS7 www.ncbi.nlm.ni...
Null ppi.EIF3C View Gene Set 0.0005821 6 0.01662 79 Protein-protein-interaction for EIF3C www.ncbi.nlm.ni...
Null ppi.KAT2B View Gene Set 0.0006014 71 0.01685 82 Protein-protein-interaction for KAT2B www.ncbi.nlm.ni...
Null ppi.NUP107 View Gene Set 0.0006124 7 0.01695 83 Protein-protein-interaction for NUP107 www.ncbi.nlm.ni...
Null ppi.USP7 View Gene Set 0.0006424 24 0.01757 84 Protein-protein-interaction for USP7 www.ncbi.nlm.ni...
Null ppi.TAF10 View Gene Set 0.0006811 27 0.01841 85 Protein-protein-interaction for TAF10 www.ncbi.nlm.ni...
Null ppi.PABPC1 View Gene Set 0.0007504 26 0.01981 86 Protein-protein-interaction for PABPC1 www.ncbi.nlm.ni...
Null ppi.EXOSC5 View Gene Set 0.0007471 11 0.01981 86 Protein-protein-interaction for EXOSC5 www.ncbi.nlm.ni...
Null ppi.TH1L View Gene Set 0.0008658 26 0.02235 88 Protein-protein-interaction for TH1L www.ncbi.nlm.ni...
Null ppi.BANF1 View Gene Set 0.0008571 34 0.02235 88 Protein-protein-interaction for BANF1 www.ncbi.nlm.ni...
Null ppi.BRF2 View Gene Set 0.0009107 23 0.02299 90 Protein-protein-interaction for BRF2 www.ncbi.nlm.ni...
Null ppi.RANBP3 View Gene Set 0.0009036 6 0.02299 90 Protein-protein-interaction for RANBP3 www.ncbi.nlm.ni...
Null ppi.USP11 View Gene Set 0.000921 17 0.023 92 Protein-protein-interaction for USP11 www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0009556 104 0.0236 93 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.PRPF19 View Gene Set 0.0009711 9 0.02373 94 Protein-protein-interaction for PRPF19 www.ncbi.nlm.ni...
Null ppi.THRB View Gene Set 0.001001 8 0.0242 95 Protein-protein-interaction for THRB www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 0.001022 79 0.02446 96 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.PRKDC View Gene Set 0.001064 38 0.02493 97 Protein-protein-interaction for PRKDC www.ncbi.nlm.ni...
Null ppi.MED24 View Gene Set 0.001059 20 0.02493 97 Protein-protein-interaction for MED24 www.ncbi.nlm.ni...
Null ppi.MCRS1 View Gene Set 0.001093 16 0.02535 99 Protein-protein-interaction for MCRS1 www.ncbi.nlm.ni...
Null ppi.RFWD2 View Gene Set 0.001105 26 0.02537 100 Protein-protein-interaction for RFWD2 www.ncbi.nlm.ni...
Null ppi.TAF1A View Gene Set 0.001116 14 0.02537 100 Protein-protein-interaction for TAF1A www.ncbi.nlm.ni...
Null ppi.DDX20 View Gene Set 0.001174 17 0.02593 102 Protein-protein-interaction for DDX20 www.ncbi.nlm.ni...
Null ppi.PMS2 View Gene Set 0.001159 14 0.02593 102 Protein-protein-interaction for PMS2 www.ncbi.nlm.ni...
Null ppi.BRCC3 View Gene Set 0.001174 22 0.02593 102 Protein-protein-interaction for BRCC3 www.ncbi.nlm.ni...
Null ppi.POLR1A View Gene Set 0.001187 11 0.02597 105 Protein-protein-interaction for POLR1A www.ncbi.nlm.ni...
Null ppi.SMNDC1 View Gene Set 0.001237 8 0.02665 106 Protein-protein-interaction for SMNDC1 www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 0.001247 31 0.02665 106 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.AURKA View Gene Set 0.001253 9 0.02665 106 Protein-protein-interaction for AURKA www.ncbi.nlm.ni...
Null ppi.SETD8 View Gene Set 0.001289 9 0.02717 109 Protein-protein-interaction for SETD8 www.ncbi.nlm.ni...
Null ppi.CDC7 View Gene Set 0.001319 7 0.02755 110 Protein-protein-interaction for CDC7 www.ncbi.nlm.ni...
Null ppi.RAD50 View Gene Set 0.001346 20 0.02786 111 Protein-protein-interaction for RAD50 www.ncbi.nlm.ni...
Null ppi.ATRIP View Gene Set 0.001362 9 0.02792 112 Protein-protein-interaction for ATRIP www.ncbi.nlm.ni...
Null ppi.POLR3C View Gene Set 0.001429 10 0.02867 113 Protein-protein-interaction for POLR3C www.ncbi.nlm.ni...
Null ppi.SNRPD3 View Gene Set 0.00143 7 0.02867 113 Protein-protein-interaction for SNRPD3 www.ncbi.nlm.ni...
Null ppi.TBL1XR1 View Gene Set 0.001435 9 0.02867 113 Protein-protein-interaction for TBL1XR1 www.ncbi.nlm.ni...
Null ppi.COPS8 View Gene Set 0.001467 8 0.02905 116 Protein-protein-interaction for COPS8 www.ncbi.nlm.ni...
Null ppi.THRAP3 View Gene Set 0.001511 12 0.02965 117 Protein-protein-interaction for THRAP3 www.ncbi.nlm.ni...
Null ppi.MYBBP1A View Gene Set 0.001571 7 0.03053 118 Protein-protein-interaction for MYBBP1A www.ncbi.nlm.ni...
Null ppi.ING3 View Gene Set 0.001622 10 0.03053 118 Protein-protein-interaction for ING3 www.ncbi.nlm.ni...
Null ppi.WRNIP1 View Gene Set 0.001587 6 0.03053 118 Protein-protein-interaction for WRNIP1 www.ncbi.nlm.ni...
Null ppi.MKNK1 View Gene Set 0.001597 12 0.03053 118 Protein-protein-interaction for MKNK1 www.ncbi.nlm.ni...
Null ppi.MDC1 View Gene Set 0.001618 20 0.03053 118 Protein-protein-interaction for MDC1 www.ncbi.nlm.ni...
Null ppi.SNRNP200 View Gene Set 0.00167 15 0.03119 123 Protein-protein-interaction for SNRNP200 www.ncbi.nlm.ni...
Null ppi.C8orf41 View Gene Set 0.001804 10 0.03341 124 Protein-protein-interaction for C8orf41 www.ncbi.nlm.ni...
Null ppi.NUP43 View Gene Set 0.001949 6 0.03581 125 Protein-protein-interaction for NUP43 www.ncbi.nlm.ni...
Null ppi.BCL7C View Gene Set 0.001992 11 0.03632 126 Protein-protein-interaction for BCL7C www.ncbi.nlm.ni...
Null ppi.NBN View Gene Set 0.002057 13 0.03664 127 Protein-protein-interaction for NBN www.ncbi.nlm.ni...
Null ppi.INO80 View Gene Set 0.002045 11 0.03664 127 Protein-protein-interaction for INO80 www.ncbi.nlm.ni...
Null ppi.AIMP2 View Gene Set 0.002058 12 0.03664 127 Protein-protein-interaction for AIMP2 www.ncbi.nlm.ni...
Null ppi.KPNA6 View Gene Set 0.002119 6 0.03745 130 Protein-protein-interaction for KPNA6 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 0.002178 168 0.03819 131 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.CHD1L View Gene Set 0.002207 15 0.03841 132 Protein-protein-interaction for CHD1L www.ncbi.nlm.ni...
Null ppi.MYSM1 View Gene Set 0.002332 13 0.04009 133 Protein-protein-interaction for MYSM1 www.ncbi.nlm.ni...
Null ppi.CHTF18 View Gene Set 0.002339 13 0.04009 133 Protein-protein-interaction for CHTF18 www.ncbi.nlm.ni...
Null ppi.HNRNPL View Gene Set 0.002425 8 0.04126 135 Protein-protein-interaction for HNRNPL www.ncbi.nlm.ni...
Null ppi.SEH1L View Gene Set 0.002508 6 0.04236 136 Protein-protein-interaction for SEH1L www.ncbi.nlm.ni...
Null ppi.ORC4L View Gene Set 0.00264 7 0.04426 137 Protein-protein-interaction for ORC4L www.ncbi.nlm.ni...
Null ppi.UPF2 View Gene Set 0.002701 12 0.04496 138 Protein-protein-interaction for UPF2 www.ncbi.nlm.ni...
Null ppi.MCM8 View Gene Set 0.002741 6 0.0453 139 Protein-protein-interaction for MCM8 www.ncbi.nlm.ni...
Null ppi.MSH2 View Gene Set 0.002798 16 0.04559 140 Protein-protein-interaction for MSH2 www.ncbi.nlm.ni...
Null ppi.IKBKE View Gene Set 0.002781 19 0.04559 140 Protein-protein-interaction for IKBKE www.ncbi.nlm.ni...
Null ppi.RPAP1 View Gene Set 0.002837 24 0.0459 142 Protein-protein-interaction for RPAP1 www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SFRS12 View Gene Set 9.877e-14 49 2.345e-10 1 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 5.654e-07 76 0.0006712 2 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.302e-06 166 0.001031 3 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 3.669e-05 22 0.0163 4 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 3.284e-05 11 0.0163 4 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.WRN View Gene Set 4.12e-05 17 0.0163 4 Protein-protein-interaction for WRN www.ncbi.nlm.ni...
Null ppi.XRN1 View Gene Set 5.769e-05 24 0.01957 7 Protein-protein-interaction for XRN1 www.ncbi.nlm.ni...
Null ppi.XRCC5 View Gene Set 7.465e-05 26 0.02215 8 Protein-protein-interaction for XRCC5 www.ncbi.nlm.ni...
Null ppi.EXOSC5 View Gene Set 8.462e-05 18 0.02232 9 Protein-protein-interaction for EXOSC5 www.ncbi.nlm.ni...
Null ppi.SMN2 View Gene Set 9.987e-05 9 0.02371 10 Protein-protein-interaction for SMN2 www.ncbi.nlm.ni...
Null ppi.NXF1 View Gene Set 0.0001283 14 0.0277 11 Protein-protein-interaction for NXF1 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 0.0001981 10 0.03919 12 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.PGR View Gene Set 0.00022 9 0.04018 13 Protein-protein-interaction for PGR www.ncbi.nlm.ni...
Null ppi.EIF2S2 View Gene Set 0.0002408 17 0.04084 14 Protein-protein-interaction for EIF2S2 www.ncbi.nlm.ni...
Null ppi.NCBP2 View Gene Set 0.0003122 6 0.04632 15 Protein-protein-interaction for NCBP2 www.ncbi.nlm.ni...
Null ppi.EIF3G View Gene Set 0.000298 7 0.04632 15 Protein-protein-interaction for EIF3G www.ncbi.nlm.ni...
Null ppi.DBF4 View Gene Set 0.0004407 8 0.04686 17 Protein-protein-interaction for DBF4 www.ncbi.nlm.ni...
Null ppi.RALYL View Gene Set 0.000345 11 0.04686 17 Protein-protein-interaction for RALYL www.ncbi.nlm.ni...
Null ppi.EIF5 View Gene Set 0.0004228 6 0.04686 17 Protein-protein-interaction for EIF5 www.ncbi.nlm.ni...
Null ppi.ORC5L View Gene Set 0.0004131 10 0.04686 17 Protein-protein-interaction for ORC5L www.ncbi.nlm.ni...
Null ppi.RPA2 View Gene Set 0.0004224 13 0.04686 17 Protein-protein-interaction for RPA2 www.ncbi.nlm.ni...
Null ppi.SMARCB1 View Gene Set 0.000454 9 0.04686 17 Protein-protein-interaction for SMARCB1 www.ncbi.nlm.ni...
Null ppi.RBM8A View Gene Set 0.0003851 6 0.04686 17 Protein-protein-interaction for RBM8A www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.155871 View Gene Set 2.378e-29 251 8.547e-26 1 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 7.288e-15 147 1.31e-11 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 4.229e-14 50 5.066e-11 3 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.SRRM2 View Gene Set 5.001e-11 101 4.493e-08 4 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 1.724e-09 35 1.239e-06 5 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 2.629e-09 21 1.575e-06 6 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 3.911e-08 66 2.008e-05 7 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 1.15e-07 42 5.167e-05 8 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.USP36 View Gene Set 3.885e-07 17 0.0001551 9 Protein-protein-interaction for USP36 www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 5.115e-07 46 0.0001649 10 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 5.654e-07 76 0.0001649 10 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.RPA1 View Gene Set 6.68e-07 24 0.0001649 10 Protein-protein-interaction for RPA1 www.ncbi.nlm.ni...
Null ppi.RPA2 View Gene Set 6.188e-07 25 0.0001649 10 Protein-protein-interaction for RPA2 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 6.716e-07 42 0.0001649 10 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.HIST1H4A View Gene Set 6.882e-07 31 0.0001649 10 Protein-protein-interaction for HIST1H4A www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 7.78e-07 96 0.0001747 16 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.XRCC5 View Gene Set 1.068e-06 52 0.0002258 17 Protein-protein-interaction for XRCC5 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 2.159e-06 15 0.000431 18 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.EIF3F View Gene Set 2.427e-06 25 0.000459 19 Protein-protein-interaction for EIF3F www.ncbi.nlm.ni...
Null ppi.SUPT16H View Gene Set 2.815e-06 15 0.0005059 20 Protein-protein-interaction for SUPT16H www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 3.28e-06 55 0.0005614 21 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.EIF3H View Gene Set 5.055e-06 16 0.0008258 22 Protein-protein-interaction for EIF3H www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 8.064e-06 21 0.00126 23 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.PRMT5 View Gene Set 9.386e-06 35 0.001406 24 Protein-protein-interaction for PRMT5 www.ncbi.nlm.ni...
Null ppi.WRN View Gene Set 1.23e-05 21 0.001768 25 Protein-protein-interaction for WRN www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 1.659e-05 44 0.002209 26 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.GPN1 View Gene Set 1.609e-05 27 0.002209 26 Protein-protein-interaction for GPN1 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.767e-05 220 0.002269 28 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.GIGYF2 View Gene Set 2.246e-05 19 0.002583 29 Protein-protein-interaction for GIGYF2 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 2.238e-05 11 0.002583 29 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.TERF2 View Gene Set 2.287e-05 10 0.002583 29 Protein-protein-interaction for TERF2 www.ncbi.nlm.ni...
Null ppi.EIF3B View Gene Set 2.3e-05 11 0.002583 29 Protein-protein-interaction for EIF3B www.ncbi.nlm.ni...
Null ppi.EXOSC5 View Gene Set 2.478e-05 20 0.002699 33 Protein-protein-interaction for EXOSC5 www.ncbi.nlm.ni...
Null ppi.WDR48 View Gene Set 2.941e-05 52 0.003109 34 Protein-protein-interaction for WDR48 www.ncbi.nlm.ni...
Null ppi.NXF1 View Gene Set 3.065e-05 17 0.003148 35 Protein-protein-interaction for NXF1 www.ncbi.nlm.ni...
Null ppi.WDR77 View Gene Set 4.045e-05 18 0.004038 36 Protein-protein-interaction for WDR77 www.ncbi.nlm.ni...
Null ppi.USP39 View Gene Set 4.888e-05 16 0.004599 37 Protein-protein-interaction for USP39 www.ncbi.nlm.ni...
Null ppi.RNU12-2P View Gene Set 4.991e-05 18 0.004599 37 Protein-protein-interaction for RNU12-2P www.ncbi.nlm.ni...
Null ppi.RNU11 View Gene Set 4.991e-05 18 0.004599 37 Protein-protein-interaction for RNU11 www.ncbi.nlm.ni...
Null ppi.PRPF8 View Gene Set 5.844e-05 14 0.005251 40 Protein-protein-interaction for PRPF8 www.ncbi.nlm.ni...
Null ppi.XRN1 View Gene Set 5.991e-05 25 0.005251 41 Protein-protein-interaction for XRN1 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 6.395e-05 48 0.005402 42 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.SF3B1 View Gene Set 6.614e-05 31 0.005402 42 Protein-protein-interaction for SF3B1 www.ncbi.nlm.ni...
Null ppi.ZNF496 View Gene Set 6.48e-05 13 0.005402 42 Protein-protein-interaction for ZNF496 www.ncbi.nlm.ni...
Null ppi.MCM6 View Gene Set 8.059e-05 7 0.006437 45 Protein-protein-interaction for MCM6 www.ncbi.nlm.ni...
Null ppi.CBX3 View Gene Set 8.47e-05 26 0.006504 46 Protein-protein-interaction for CBX3 www.ncbi.nlm.ni...
Null ppi.NAA38 View Gene Set 8.505e-05 28 0.006504 46 Protein-protein-interaction for NAA38 www.ncbi.nlm.ni...
Null ppi.RNMTL1 View Gene Set 9.434e-05 8 0.007064 48 Protein-protein-interaction for RNMTL1 www.ncbi.nlm.ni...
Null ppi.WRNIP1 View Gene Set 0.0001033 8 0.00758 49 Protein-protein-interaction for WRNIP1 www.ncbi.nlm.ni...
Null ppi.EIF3G View Gene Set 0.0001055 8 0.00758 50 Protein-protein-interaction for EIF3G www.ncbi.nlm.ni...
Null ppi.KEAP1 View Gene Set 0.0001154 22 0.008129 51 Protein-protein-interaction for KEAP1 www.ncbi.nlm.ni...
Null ppi.ORC5L View Gene Set 0.0001233 11 0.00852 52 Protein-protein-interaction for ORC5L www.ncbi.nlm.ni...
Null ppi.SMNDC1 View Gene Set 0.0001426 10 0.008934 53 Protein-protein-interaction for SMNDC1 www.ncbi.nlm.ni...
Null ppi.RALYL View Gene Set 0.0001442 12 0.008934 53 Protein-protein-interaction for RALYL www.ncbi.nlm.ni...
Null ppi.PDS5A View Gene Set 0.0001429 6 0.008934 53 Protein-protein-interaction for PDS5A www.ncbi.nlm.ni...
Null ppi.SMN2 View Gene Set 0.0001414 11 0.008934 53 Protein-protein-interaction for SMN2 www.ncbi.nlm.ni...
Null ppi.SNORD3A View Gene Set 0.0001344 9 0.008934 53 Protein-protein-interaction for SNORD3A www.ncbi.nlm.ni...
Null ppi.EIF3C View Gene Set 0.0001321 9 0.008934 53 Protein-protein-interaction for EIF3C www.ncbi.nlm.ni...
Null ppi.THAP7 View Gene Set 0.0001677 12 0.01021 59 Protein-protein-interaction for THAP7 www.ncbi.nlm.ni...
Null ppi.SF3A3 View Gene Set 0.0001775 8 0.01038 60 Protein-protein-interaction for SF3A3 www.ncbi.nlm.ni...
Null ppi.U2AF2 View Gene Set 0.0001844 23 0.01038 60 Protein-protein-interaction for U2AF2 www.ncbi.nlm.ni...
Null ppi.ORC3L View Gene Set 0.0001733 16 0.01038 60 Protein-protein-interaction for ORC3L www.ncbi.nlm.ni...
Null ppi.UCHL5 View Gene Set 0.0001848 34 0.01038 60 Protein-protein-interaction for UCHL5 www.ncbi.nlm.ni...
Null ppi.RBM8A View Gene Set 0.0001847 8 0.01038 60 Protein-protein-interaction for RBM8A www.ncbi.nlm.ni...
Null ppi.CBX1 View Gene Set 0.0001919 24 0.01049 65 Protein-protein-interaction for CBX1 www.ncbi.nlm.ni...
Null ppi.USP42 View Gene Set 0.0001927 24 0.01049 65 Protein-protein-interaction for USP42 www.ncbi.nlm.ni...
Null ppi.MED13 View Gene Set 0.000205 12 0.011 67 Protein-protein-interaction for MED13 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 0.0002094 47 0.01107 68 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.ZBTB9 View Gene Set 0.0002209 16 0.01151 69 Protein-protein-interaction for ZBTB9 www.ncbi.nlm.ni...
Null ppi.POLD3 View Gene Set 0.0002394 6 0.01219 70 Protein-protein-interaction for POLD3 www.ncbi.nlm.ni...
Null ppi.EIF2S2 View Gene Set 0.0002408 17 0.01219 70 Protein-protein-interaction for EIF2S2 www.ncbi.nlm.ni...
Null ppi.TAF10 View Gene Set 0.000273 29 0.01363 72 Protein-protein-interaction for TAF10 www.ncbi.nlm.ni...
Null ppi.SRPK2 View Gene Set 0.0002788 7 0.01373 73 Protein-protein-interaction for SRPK2 www.ncbi.nlm.ni...
Null ppi.NCBP2 View Gene Set 0.0003122 6 0.01516 74 Protein-protein-interaction for NCBP2 www.ncbi.nlm.ni...
Null ppi.UPF2 View Gene Set 0.0003172 19 0.0152 75 Protein-protein-interaction for UPF2 www.ncbi.nlm.ni...
Null ppi.DMAP1 View Gene Set 0.0003856 16 0.018 76 Protein-protein-interaction for DMAP1 www.ncbi.nlm.ni...
Null ppi.855836 View Gene Set 0.0003854 8 0.018 76 Protein-protein-interaction for 855836 www.ncbi.nlm.ni...
Null ppi.GAR1 View Gene Set 0.0003965 10 0.01801 78 Protein-protein-interaction for GAR1 www.ncbi.nlm.ni...
Null ppi.PRKDC View Gene Set 0.0004008 49 0.01801 78 Protein-protein-interaction for PRKDC www.ncbi.nlm.ni...
Null ppi.USP7 View Gene Set 0.0003962 32 0.01801 78 Protein-protein-interaction for USP7 www.ncbi.nlm.ni...
Null ppi.EIF5 View Gene Set 0.0004228 6 0.01853 81 Protein-protein-interaction for EIF5 www.ncbi.nlm.ni...
Null ppi.RPAP3 View Gene Set 0.0004194 30 0.01853 81 Protein-protein-interaction for RPAP3 www.ncbi.nlm.ni...
Null ppi.BAZ1B View Gene Set 0.0004519 31 0.01957 83 Protein-protein-interaction for BAZ1B www.ncbi.nlm.ni...
Null ppi.USP50 View Gene Set 0.0004644 22 0.01987 84 Protein-protein-interaction for USP50 www.ncbi.nlm.ni...
Null ppi.COPS8 View Gene Set 0.0004709 13 0.01991 85 Protein-protein-interaction for COPS8 www.ncbi.nlm.ni...
Null ppi.ORC6L View Gene Set 0.0004817 15 0.02013 86 Protein-protein-interaction for ORC6L www.ncbi.nlm.ni...
Null ppi.MSH2 View Gene Set 0.0005045 20 0.02068 87 Protein-protein-interaction for MSH2 www.ncbi.nlm.ni...
Null ppi.TH1L View Gene Set 0.0005064 29 0.02068 87 Protein-protein-interaction for TH1L www.ncbi.nlm.ni...
Null ppi.DSCC1 View Gene Set 0.0005193 6 0.02097 89 Protein-protein-interaction for DSCC1 www.ncbi.nlm.ni...
Null ppi.XRN2 View Gene Set 0.0005281 9 0.02109 90 Protein-protein-interaction for XRN2 www.ncbi.nlm.ni...
Null ppi.MCM5 View Gene Set 0.0005414 7 0.02138 91 Protein-protein-interaction for MCM5 www.ncbi.nlm.ni...
Null ppi.RPAP2 View Gene Set 0.0005521 43 0.02157 92 Protein-protein-interaction for RPAP2 www.ncbi.nlm.ni...
Null ppi.NUP107 View Gene Set 0.0006124 7 0.02367 93 Protein-protein-interaction for NUP107 www.ncbi.nlm.ni...
Null ppi.POLR1A View Gene Set 0.0006234 13 0.02383 94 Protein-protein-interaction for POLR1A www.ncbi.nlm.ni...
Null ppi.WWOX View Gene Set 0.0006319 26 0.02383 94 Protein-protein-interaction for WWOX www.ncbi.nlm.ni...
Null ppi.ING3 View Gene Set 0.0006386 12 0.02383 94 Protein-protein-interaction for ING3 www.ncbi.nlm.ni...
Null ppi.MCM10 View Gene Set 0.0006431 28 0.02383 94 Protein-protein-interaction for MCM10 www.ncbi.nlm.ni...
Null ppi.HNRNPL View Gene Set 0.0006661 9 0.02394 98 Protein-protein-interaction for HNRNPL www.ncbi.nlm.ni...
Null ppi.TAF1A View Gene Set 0.000665 16 0.02394 98 Protein-protein-interaction for TAF1A www.ncbi.nlm.ni...
Null ppi.IKBKE View Gene Set 0.0006563 23 0.02394 98 Protein-protein-interaction for IKBKE www.ncbi.nlm.ni...
Null ppi.PABPC1 View Gene Set 0.0007073 37 0.02513 101 Protein-protein-interaction for PABPC1 www.ncbi.nlm.ni...
Null ppi.AIMP2 View Gene Set 0.0007132 13 0.02513 101 Protein-protein-interaction for AIMP2 www.ncbi.nlm.ni...
Null ppi.SRSF2 View Gene Set 0.000746 6 0.02603 103 Protein-protein-interaction for SRSF2 www.ncbi.nlm.ni...
Null ppi.MCRS1 View Gene Set 0.0007689 17 0.02632 104 Protein-protein-interaction for MCRS1 www.ncbi.nlm.ni...
Null ppi.POLR1C View Gene Set 0.0007676 7 0.02632 104 Protein-protein-interaction for POLR1C www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 0.0008156 72 0.02765 106 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.TXNL4A View Gene Set 0.0008563 6 0.02849 107 Protein-protein-interaction for TXNL4A www.ncbi.nlm.ni...
Null ppi.DBF4 View Gene Set 0.0008496 12 0.02849 107 Protein-protein-interaction for DBF4 www.ncbi.nlm.ni...
Null ppi.HSPA8 View Gene Set 0.0008924 30 0.02926 109 Protein-protein-interaction for HSPA8 www.ncbi.nlm.ni...
Null ppi.SP1 View Gene Set 0.0008972 104 0.02926 109 Protein-protein-interaction for SP1 www.ncbi.nlm.ni...
Null ppi.RANBP3 View Gene Set 0.0009036 6 0.02926 109 Protein-protein-interaction for RANBP3 www.ncbi.nlm.ni...
Null ppi.RANGAP1 View Gene Set 0.0009268 5 0.02948 112 Protein-protein-interaction for RANGAP1 www.ncbi.nlm.ni...
Null ppi.USP11 View Gene Set 0.000921 17 0.02948 112 Protein-protein-interaction for USP11 www.ncbi.nlm.ni...
Null ppi.NUP62 View Gene Set 0.0009416 25 0.02969 114 Protein-protein-interaction for NUP62 www.ncbi.nlm.ni...
Null ppi.NUTF2 View Gene Set 0.0009817 5 0.03019 115 Protein-protein-interaction for NUTF2 www.ncbi.nlm.ni...
Null ppi.PRPF19 View Gene Set 0.0009711 9 0.03019 115 Protein-protein-interaction for PRPF19 www.ncbi.nlm.ni...
Null ppi.EXO1 View Gene Set 0.0009829 8 0.03019 115 Protein-protein-interaction for EXO1 www.ncbi.nlm.ni...
Null ppi.CD2BP2 View Gene Set 0.0009991 15 0.03043 118 Protein-protein-interaction for CD2BP2 www.ncbi.nlm.ni...
Null ppi.NUP50 View Gene Set 0.001011 8 0.03052 119 Protein-protein-interaction for NUP50 www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.001056 116 0.03132 120 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.SRSF2IP View Gene Set 0.001063 8 0.03132 120 Protein-protein-interaction for SRSF2IP www.ncbi.nlm.ni...
Null ppi.MED24 View Gene Set 0.001059 20 0.03132 120 Protein-protein-interaction for MED24 www.ncbi.nlm.ni...
Null ppi.CARM1 View Gene Set 0.001105 35 0.03204 123 Protein-protein-interaction for CARM1 www.ncbi.nlm.ni...
Null ppi.RFWD2 View Gene Set 0.001105 26 0.03204 123 Protein-protein-interaction for RFWD2 www.ncbi.nlm.ni...
Null ppi.EXOSC6 View Gene Set 0.001123 31 0.03229 125 Protein-protein-interaction for EXOSC6 www.ncbi.nlm.ni...
Null ppi.EIF3L View Gene Set 0.001162 13 0.03287 126 Protein-protein-interaction for EIF3L www.ncbi.nlm.ni...
Null ppi.PMS2 View Gene Set 0.001159 14 0.03287 126 Protein-protein-interaction for PMS2 www.ncbi.nlm.ni...
Null ppi.BRCC3 View Gene Set 0.001174 22 0.03296 128 Protein-protein-interaction for BRCC3 www.ncbi.nlm.ni...
Null ppi.MCM2 View Gene Set 0.001203 13 0.0334 129 Protein-protein-interaction for MCM2 www.ncbi.nlm.ni...
Null ppi.YWHAG View Gene Set 0.001208 119 0.0334 129 Protein-protein-interaction for YWHAG www.ncbi.nlm.ni...
Null ppi.PPID View Gene Set 0.001229 10 0.03359 131 Protein-protein-interaction for PPID www.ncbi.nlm.ni...
Null ppi.KAT2B View Gene Set 0.001234 88 0.03359 131 Protein-protein-interaction for KAT2B www.ncbi.nlm.ni...
Null ppi.SETD8 View Gene Set 0.001289 9 0.03484 133 Protein-protein-interaction for SETD8 www.ncbi.nlm.ni...
Null ppi.BANF1 View Gene Set 0.001341 35 0.03597 134 Protein-protein-interaction for BANF1 www.ncbi.nlm.ni...
Null ppi.MPHOSPH6 View Gene Set 0.0014 14 0.03647 135 Protein-protein-interaction for MPHOSPH6 www.ncbi.nlm.ni...
Null ppi.POLR3C View Gene Set 0.001429 10 0.03647 135 Protein-protein-interaction for POLR3C www.ncbi.nlm.ni...
Null ppi.SNRPD3 View Gene Set 0.00143 7 0.03647 135 Protein-protein-interaction for SNRPD3 www.ncbi.nlm.ni...
Null ppi.UBB View Gene Set 0.001414 46 0.03647 135 Protein-protein-interaction for UBB www.ncbi.nlm.ni...
Null ppi.ASCC2 View Gene Set 0.001375 39 0.03647 135 Protein-protein-interaction for ASCC2 www.ncbi.nlm.ni...
Null ppi.C4orf14 View Gene Set 0.001395 12 0.03647 135 Protein-protein-interaction for C4orf14 www.ncbi.nlm.ni...
Null ppi.GTF3C3 View Gene Set 0.001431 12 0.03647 135 Protein-protein-interaction for GTF3C3 www.ncbi.nlm.ni...
Null ppi.HIST2H2AC View Gene Set 0.001458 14 0.03689 142 Protein-protein-interaction for HIST2H2AC www.ncbi.nlm.ni...
Null ppi.ORC4L View Gene Set 0.001485 10 0.03733 143 Protein-protein-interaction for ORC4L www.ncbi.nlm.ni...
Null ppi.NOL12 View Gene Set 0.001528 7 0.03814 144 Protein-protein-interaction for NOL12 www.ncbi.nlm.ni...
Null ppi.ATRIP View Gene Set 0.00163 13 0.04011 145 Protein-protein-interaction for ATRIP www.ncbi.nlm.ni...
Null ppi.GAS7 View Gene Set 0.001626 11 0.04011 145 Protein-protein-interaction for GAS7 www.ncbi.nlm.ni...
Null ppi.AURKA View Gene Set 0.001684 16 0.04118 147 Protein-protein-interaction for AURKA www.ncbi.nlm.ni...
Null ppi.UPF1 View Gene Set 0.001761 8 0.04276 148 Protein-protein-interaction for UPF1 www.ncbi.nlm.ni...
Null ppi.C8orf41 View Gene Set 0.001804 10 0.0435 149 Protein-protein-interaction for C8orf41 www.ncbi.nlm.ni...
Null ppi.SNRPD1 View Gene Set 0.001819 6 0.04358 150 Protein-protein-interaction for SNRPD1 www.ncbi.nlm.ni...
Null ppi.DNTTIP2 View Gene Set 0.001833 7 0.04362 151 Protein-protein-interaction for DNTTIP2 www.ncbi.nlm.ni...
Null ppi.BRAP View Gene Set 0.001846 6 0.04365 152 Protein-protein-interaction for BRAP www.ncbi.nlm.ni...
Null ppi.NUP43 View Gene Set 0.001949 6 0.04578 153 Protein-protein-interaction for NUP43 www.ncbi.nlm.ni...
Null ppi.TBL1XR1 View Gene Set 0.001996 12 0.04629 154 Protein-protein-interaction for TBL1XR1 www.ncbi.nlm.ni...
Null ppi.BCL7C View Gene Set 0.001992 11 0.04629 154 Protein-protein-interaction for BCL7C www.ncbi.nlm.ni...
Null ppi.INO80 View Gene Set 0.002045 11 0.0471 156 Protein-protein-interaction for INO80 www.ncbi.nlm.ni...
Null ppi.UHRF1 View Gene Set 0.002059 12 0.04713 157 Protein-protein-interaction for UHRF1 www.ncbi.nlm.ni...
Null ppi.TERT View Gene Set 0.002083 14 0.04738 158 Protein-protein-interaction for TERT www.ncbi.nlm.ni...
Null ppi.LSM5 View Gene Set 0.00216 6 0.04883 159 Protein-protein-interaction for LSM5 www.ncbi.nlm.ni...
Null ppi.CHD1L View Gene Set 0.002207 15 0.04928 160 Protein-protein-interaction for CHD1L www.ncbi.nlm.ni...
Null ppi.MDC1 View Gene Set 0.002199 24 0.04928 160 Protein-protein-interaction for MDC1 www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TNF alpha/NF-kB View Gene Set 0.0002937 170 0.002937 1 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null purine nucleotides de novo biosynthesis II View Gene Set 5.125e-05 11 0.01333 1 HUMANCYC - purine nucleotides de novo biosynthesis II gene set www.pathwaycomm...
Null folate transformations View Gene Set 0.0002467 9 0.03207 2 HUMANCYC - folate transformations gene set www.pathwaycomm...
Null folate polyglutamylation View Gene Set 0.0004698 5 0.04071 3 HUMANCYC - folate polyglutamylation gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Validated targets of C-MYC transcriptional activation View Gene Set 3.885e-12 80 7.227e-10 1 NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set www.pathwaycomm...
Null C-MYC pathway View Gene Set 1.419e-07 149 1.32e-05 2 NCI_NATURE - C-MYC pathway gene set www.pathwaycomm...
Null Signaling events mediated by HDAC Class I View Gene Set 4.675e-05 114 0.002898 3 NCI_NATURE - Signaling events mediated by HDAC Class I gene set www.pathwaycomm...
Null Regulation of Telomerase View Gene Set 0.0006035 68 0.02806 4 NCI_NATURE - Regulation of Telomerase gene set www.pathwaycomm...
Null BARD1 signaling events View Gene Set 0.001064 29 0.03957 5 NCI_NATURE - BARD1 signaling events gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Gene Expression View Gene Set 1.385e-27 381 1.547e-24 1 REACTOME - Gene Expression gene set www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA View Gene Set 9.255e-27 138 5.169e-24 2 REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set www.pathwaycomm...
Null mRNA Processing View Gene Set 1.908e-23 158 7.104e-21 3 REACTOME - mRNA Processing gene set www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript View Gene Set 2.767e-22 185 7.727e-20 4 REACTOME - Formation and Maturation of mRNA Transcript gene set www.pathwaycomm...
Null mRNA Splicing - Major Pathway View Gene Set 1.746e-20 107 3.251e-18 5 REACTOME - mRNA Splicing - Major Pathway gene set www.pathwaycomm...
Null mRNA Splicing View Gene Set 1.746e-20 107 3.251e-18 5 REACTOME - mRNA Splicing gene set www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm View Gene Set 3.158e-14 55 5.038e-12 7 REACTOME - Transport of Mature Transcript to Cytoplasm gene set www.pathwaycomm...
Null Transcription View Gene Set 5.15e-14 178 7.191e-12 8 REACTOME - Transcription gene set www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript View Gene Set 1.764e-13 51 2.19e-11 9 REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set www.pathwaycomm...
Null Metabolism of RNA View Gene Set 1.086e-12 174 1.213e-10 10 REACTOME - Metabolism of RNA gene set www.pathwaycomm...
Null Cell Cycle Mitotic View Gene Set 2.028e-12 312 2.06e-10 11 REACTOME - Cell Cycle Mitotic gene set www.pathwaycomm... Mitotic&format=...
Null snRNP Assembly View Gene Set 1.92e-11 50 1.65e-09 12 REACTOME - snRNP Assembly gene set www.pathwaycomm...
Null Metabolism of non-coding RNA View Gene Set 1.92e-11 50 1.65e-09 12 REACTOME - Metabolism of non-coding RNA gene set www.pathwaycomm...
Null DNA Replication View Gene Set 7.237e-11 200 5.774e-09 14 REACTOME - DNA Replication gene set www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA View Gene Set 2.255e-10 34 1.574e-08 15 REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set www.pathwaycomm...
Null mRNA 3'-end processing View Gene Set 2.255e-10 34 1.574e-08 15 REACTOME - mRNA 3'-end processing gene set www.pathwaycomm...
Null tRNA Aminoacylation View Gene Set 3.489e-10 42 2.292e-08 17 REACTOME - tRNA Aminoacylation gene set www.pathwaycomm...
Null Post-Elongation Processing of the Transcript View Gene Set 4.293e-10 43 2.398e-08 18 REACTOME - Post-Elongation Processing of the Transcript gene set www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region View Gene Set 4.293e-10 43 2.398e-08 18 REACTOME - Cleavage of Growing Transcript in the Termination Region gene set www.pathwaycomm...
Null RNA Polymerase II Transcription Termination View Gene Set 4.293e-10 43 2.398e-08 18 REACTOME - RNA Polymerase II Transcription Termination gene set www.pathwaycomm...
Null Mitotic M-M/G1 phases View Gene Set 5.847e-10 180 3.11e-08 21 REACTOME - Mitotic M-M/G1 phases gene set www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts View Gene Set 8.897e-10 36 4.517e-08 22 REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript View Gene Set 1.077e-09 35 5.233e-08 23 REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set www.pathwaycomm...
Null Interactions of Rev with host cellular proteins View Gene Set 1.48e-09 33 6.888e-08 24 REACTOME - Interactions of Rev with host cellular proteins gene set www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA View Gene Set 4.15e-09 33 1.854e-07 25 REACTOME - Transport of the SLBP Dependant Mature mRNA gene set www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA View Gene Set 4.801e-09 32 2.063e-07 26 REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA View Gene Set 5.021e-09 32 2.077e-07 27 REACTOME - Transport of the SLBP independent Mature mRNA gene set www.pathwaycomm...
Null Interactions of Vpr with host cellular proteins View Gene Set 1.783e-08 34 7.113e-07 28 REACTOME - Interactions of Vpr with host cellular proteins gene set www.pathwaycomm...
Null Nuclear import of Rev protein View Gene Set 3.479e-08 30 1.34e-06 29 REACTOME - Nuclear import of Rev protein gene set www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 4.596e-08 93 1.711e-06 30 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null NEP/NS2 Interacts with the Cellular Export Machinery View Gene Set 7.713e-08 29 2.779e-06 31 REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus View Gene Set 1.184e-07 29 4.134e-06 32 REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs View Gene Set 1.391e-07 31 4.71e-06 33 REACTOME - Vpr-mediated nuclear import of PICs gene set www.pathwaycomm...
Null Cytosolic tRNA aminoacylation View Gene Set 2.737e-07 24 8.991e-06 34 REACTOME - Cytosolic tRNA aminoacylation gene set www.pathwaycomm...
Null RNA Polymerase II Transcription View Gene Set 3.03e-07 101 9.638e-06 35 REACTOME - RNA Polymerase II Transcription gene set www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus View Gene Set 3.106e-07 31 9.638e-06 35 REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set www.pathwaycomm...
Null Hexose transport View Gene Set 4.075e-07 40 1.23e-05 37 REACTOME - Hexose transport gene set www.pathwaycomm...
Null Mitotic Prometaphase View Gene Set 5.551e-07 86 1.632e-05 38 REACTOME - Mitotic Prometaphase gene set www.pathwaycomm...
Null Cell Cycle Checkpoints View Gene Set 6.217e-07 124 1.781e-05 39 REACTOME - Cell Cycle Checkpoints gene set www.pathwaycomm...
Null HIV Life Cycle View Gene Set 8.783e-07 103 2.336e-05 40 REACTOME - HIV Life Cycle gene set www.pathwaycomm...
Null Regulation of Glucokinase by Glucokinase Regulatory Protein View Gene Set 8.692e-07 29 2.336e-05 40 REACTOME - Regulation of Glucokinase by Glucokinase Regulatory Protein gene set www.pathwaycomm...
Null M Phase View Gene Set 8.396e-07 90 2.336e-05 40 REACTOME - M Phase gene set www.pathwaycomm...
Null HIV Infection View Gene Set 1.21e-06 194 3.142e-05 43 REACTOME - HIV Infection gene set www.pathwaycomm...
Null Glucose transport View Gene Set 1.318e-06 38 3.346e-05 44 REACTOME - Glucose transport gene set www.pathwaycomm...
Null Late Phase of HIV Life Cycle View Gene Set 1.803e-06 92 4.475e-05 45 REACTOME - Late Phase of HIV Life Cycle gene set www.pathwaycomm...
Null mRNA Splicing - Minor Pathway View Gene Set 2.796e-06 42 6.789e-05 46 REACTOME - mRNA Splicing - Minor Pathway gene set www.pathwaycomm...
Null Mitochondrial tRNA aminoacylation View Gene Set 7.766e-06 21 0.0001846 47 REACTOME - Mitochondrial tRNA aminoacylation gene set www.pathwaycomm...
Null Deadenylation-dependent mRNA decay View Gene Set 9.983e-06 46 0.0002323 48 REACTOME - Deadenylation-dependent mRNA decay gene set www.pathwaycomm...
Null Telomere Maintenance View Gene Set 1.103e-05 49 0.0002514 49 REACTOME - Telomere Maintenance gene set www.pathwaycomm...
Null Host Interactions of HIV factors View Gene Set 1.18e-05 132 0.0002635 50 REACTOME - Host Interactions of HIV factors gene set www.pathwaycomm...
Null Metabolism of mRNA View Gene Set 1.399e-05 125 0.0003064 51 REACTOME - Metabolism of mRNA gene set www.pathwaycomm...
Null Synthesis of DNA View Gene Set 1.675e-05 102 0.0003598 52 REACTOME - Synthesis of DNA gene set www.pathwaycomm...
Null S Phase View Gene Set 1.965e-05 113 0.0004142 53 REACTOME - S Phase gene set www.pathwaycomm...
Null Processing of Intronless Pre-mRNAs View Gene Set 2.569e-05 14 0.0005314 54 REACTOME - Processing of Intronless Pre-mRNAs gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Opening View Gene Set 3.113e-05 31 0.0006322 55 REACTOME - RNA Polymerase I Promoter Opening gene set www.pathwaycomm...
Null Post-Elongation Processing of Intronless pre-mRNA View Gene Set 3.699e-05 23 0.0007248 56 REACTOME - Post-Elongation Processing of Intronless pre-mRNA gene set www.pathwaycomm...
Null Processing of Capped Intronless Pre-mRNA View Gene Set 3.699e-05 23 0.0007248 56 REACTOME - Processing of Capped Intronless Pre-mRNA gene set www.pathwaycomm...
Null Metabolism of carbohydrates View Gene Set 4.21e-05 93 0.0008107 58 REACTOME - Metabolism of carbohydrates gene set www.pathwaycomm...
Null Chromosome Maintenance View Gene Set 4.751e-05 69 0.0008995 59 REACTOME - Chromosome Maintenance gene set www.pathwaycomm...
Null DNA strand elongation View Gene Set 5.101e-05 31 0.0009497 60 REACTOME - DNA strand elongation gene set www.pathwaycomm...
Null Unwinding of DNA View Gene Set 5.708e-05 11 0.001045 61 REACTOME - Unwinding of DNA gene set www.pathwaycomm...
Null Activation of ATR in response to replication stress View Gene Set 6.037e-05 37 0.001088 62 REACTOME - Activation of ATR in response to replication stress gene set www.pathwaycomm...
Null DNA Replication Pre-Initiation View Gene Set 6.903e-05 90 0.001205 63 REACTOME - DNA Replication Pre-Initiation gene set www.pathwaycomm...
Null M/G1 Transition View Gene Set 6.903e-05 90 0.001205 63 REACTOME - M/G1 Transition gene set www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase View Gene Set 7.534e-05 88 0.001295 65 REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set www.pathwaycomm...
Null Assembly of the pre-replicative complex View Gene Set 8.078e-05 75 0.001367 66 REACTOME - Assembly of the pre-replicative complex gene set www.pathwaycomm...
Null Extension of Telomeres View Gene Set 9.651e-05 28 0.001585 67 REACTOME - Extension of Telomeres gene set www.pathwaycomm...
Null Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S View Gene Set 9.651e-05 57 0.001585 67 REACTOME - Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S gene set www.pathwaycomm... and subsequent ...
Null RNA Polymerase I Chain Elongation View Gene Set 0.0001031 49 0.001669 69 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null Translation initiation complex formation View Gene Set 0.0001057 56 0.001687 70 REACTOME - Translation initiation complex formation gene set www.pathwaycomm...
Null Ribosomal scanning and start codon recognition View Gene Set 0.0001122 56 0.001766 71 REACTOME - Ribosomal scanning and start codon recognition gene set www.pathwaycomm...
Null G2/M Checkpoints View Gene Set 0.0001138 43 0.001766 72 REACTOME - G2/M Checkpoints gene set www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation From Type 2 Promoter View Gene Set 0.0001239 20 0.00187 73 REACTOME - RNA Polymerase III Transcription Initiation From Type 2 Promoter gene set www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation From Type 1 Promoter View Gene Set 0.0001239 21 0.00187 73 REACTOME - RNA Polymerase III Transcription Initiation From Type 1 Promoter gene set www.pathwaycomm...
Null Regulation of mitotic cell cycle View Gene Set 0.0001289 95 0.001894 75 REACTOME - Regulation of mitotic cell cycle gene set www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins View Gene Set 0.0001289 95 0.001894 75 REACTOME - APC/C-mediated degradation of cell cycle proteins gene set www.pathwaycomm...
Null Pyruvate metabolism and Citric Acid (TCA) cycle View Gene Set 0.0001399 31 0.00203 77 REACTOME - Pyruvate metabolism and Citric Acid (TCA) cycle gene set www.pathwaycomm...
Null G1/S Transition View Gene Set 0.0001545 104 0.002212 78 REACTOME - G1/S Transition gene set www.pathwaycomm...
Null RNA Polymerase I Transcription View Gene Set 0.0001639 57 0.002317 79 REACTOME - RNA Polymerase I Transcription gene set www.pathwaycomm...
Null Formation of tubulin folding intermediates by CCT/TriC View Gene Set 0.0002068 8 0.002887 80 REACTOME - Formation of tubulin folding intermediates by CCT/TriC gene set www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 0.0002131 86 0.002939 81 REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null Meiotic Recombination View Gene Set 0.0002199 42 0.002996 82 REACTOME - Meiotic Recombination gene set www.pathwaycomm...
Null Pyrimidine biosynthesis View Gene Set 0.0002752 6 0.003704 83 REACTOME - Pyrimidine biosynthesis gene set www.pathwaycomm...
Null Mitotic G1-G1/S phases View Gene Set 0.000293 113 0.003897 84 REACTOME - Mitotic G1-G1/S phases gene set www.pathwaycomm...
Null Association of TriC/CCT with target proteins during biosynthesis View Gene Set 0.0003094 9 0.004033 85 REACTOME - Association of TriC/CCT with target proteins during biosynthesis gene set www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 View Gene Set 0.0003105 77 0.004033 85 REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set www.pathwaycomm...
Null Regulation of DNA replication View Gene Set 0.0003386 81 0.004347 87 REACTOME - Regulation of DNA replication gene set www.pathwaycomm...
Null Telomere Extension By Telomerase View Gene Set 0.0003572 6 0.004534 88 REACTOME - Telomere Extension By Telomerase gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Clearance View Gene Set 0.0003671 55 0.004608 89 REACTOME - RNA Polymerase I Promoter Clearance gene set www.pathwaycomm...
Null Metabolism of nucleotides View Gene Set 0.0003869 66 0.004801 90 REACTOME - Metabolism of nucleotides gene set www.pathwaycomm...
Null Purine ribonucleoside monophosphate biosynthesis View Gene Set 0.0004184 7 0.005135 91 REACTOME - Purine ribonucleoside monophosphate biosynthesis gene set www.pathwaycomm...
Null Recycling of eIF2:GDP View Gene Set 0.0004453 8 0.005406 92 REACTOME - Recycling of eIF2:GDP gene set www.pathwaycomm...
Null DNA Repair View Gene Set 0.0004701 108 0.005646 93 REACTOME - DNA Repair gene set www.pathwaycomm...
Null G2/M DNA damage checkpoint View Gene Set 0.0005058 29 0.00601 94 REACTOME - G2/M DNA damage checkpoint gene set www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A View Gene Set 0.0006492 75 0.007633 95 REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set www.pathwaycomm...
Null Removal of licensing factors from origins View Gene Set 0.0006637 78 0.007723 96 REACTOME - Removal of licensing factors from origins gene set www.pathwaycomm...
Null Deadenylation of mRNA View Gene Set 0.0007025 22 0.008089 97 REACTOME - Deadenylation of mRNA gene set www.pathwaycomm...
Null Citric acid cycle (TCA cycle) View Gene Set 0.0007839 19 0.008934 98 REACTOME - Citric acid cycle (TCA cycle) gene set www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements View Gene Set 0.0008448 95 0.009532 99 REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set www.pathwaycomm...
Null Activation of the pre-replicative complex View Gene Set 0.0009126 30 0.01019 100 REACTOME - Activation of the pre-replicative complex gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins View Gene Set 0.0009245 77 0.01022 101 REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set www.pathwaycomm...
Null MRN complex relocalizes to nuclear foci View Gene Set 0.001008 4 0.01093 102 REACTOME - MRN complex relocalizes to nuclear foci gene set www.pathwaycomm...
Null Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks View Gene Set 0.001008 4 0.01093 102 REACTOME - Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks gene set www.pathwaycomm...
Null Mitotic Spindle Checkpoint View Gene Set 0.001031 19 0.01107 104 REACTOME - Mitotic Spindle Checkpoint gene set www.pathwaycomm...
Null Switching of origins to a post-replicative state View Gene Set 0.001143 76 0.01205 105 REACTOME - Switching of origins to a post-replicative state gene set www.pathwaycomm...
Null Orc1 removal from chromatin View Gene Set 0.001143 76 0.01205 105 REACTOME - Orc1 removal from chromatin gene set www.pathwaycomm...
Null Translation View Gene Set 0.001292 120 0.01349 107 REACTOME - Translation gene set www.pathwaycomm...
Null Pyrimidine metabolism View Gene Set 0.001364 23 0.01411 108 REACTOME - Pyrimidine metabolism gene set www.pathwaycomm...
Null Folding of actin by CCT/TriC View Gene Set 0.001527 9 0.01565 109 REACTOME - Folding of actin by CCT/TriC gene set www.pathwaycomm...
Null Removal of DNA patch containing abasic residue View Gene Set 0.001623 17 0.01633 110 REACTOME - Removal of DNA patch containing abasic residue gene set www.pathwaycomm...
Null Resolution of AP sites via the multiple-nucleotide patch replacement pathway View Gene Set 0.001623 17 0.01633 110 REACTOME - Resolution of AP sites via the multiple-nucleotide patch replacement pathway gene set www.pathwaycomm...
Null RNA Polymerase III Transcription View Gene Set 0.001735 34 0.01696 112 REACTOME - RNA Polymerase III Transcription gene set www.pathwaycomm...
Null RNA Polymerase III Abortive And Retractive Initiation View Gene Set 0.001735 34 0.01696 112 REACTOME - RNA Polymerase III Abortive And Retractive Initiation gene set www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Securin View Gene Set 0.001743 72 0.01696 112 REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set www.pathwaycomm...
Null Phosphorylation of the APC/C View Gene Set 0.001746 26 0.01696 112 REACTOME - Phosphorylation of the APC/C gene set www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components View Gene Set 0.00184 18 0.01757 116 REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex View Gene Set 0.00184 18 0.01757 116 REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1 View Gene Set 0.002183 60 0.02067 118 REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C View Gene Set 0.00222 67 0.02084 119 REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set www.pathwaycomm...
Null Metabolism of folate and pterines View Gene Set 0.002359 8 0.02196 120 REACTOME - Metabolism of folate and pterines gene set www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere View Gene Set 0.002419 35 0.02214 121 REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set www.pathwaycomm...
Null Nucleosome assembly View Gene Set 0.002419 35 0.02214 121 REACTOME - Nucleosome assembly gene set www.pathwaycomm...
Null SLC-mediated transmembrane transport View Gene Set 0.002674 248 0.02429 123 REACTOME - SLC-mediated transmembrane transport gene set www.pathwaycomm...
Null Base Excision Repair View Gene Set 0.002759 19 0.02466 124 REACTOME - Base Excision Repair gene set www.pathwaycomm...
Null Resolution of Abasic Sites (AP sites) View Gene Set 0.002759 19 0.02466 124 REACTOME - Resolution of Abasic Sites (AP sites) gene set www.pathwaycomm...
Null Mitotic G2-G2/M phases View Gene Set 0.003009 98 0.02667 126 REACTOME - Mitotic G2-G2/M phases gene set www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0) View Gene Set 0.003097 63 0.02724 127 REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set www.pathwaycomm...
Null Metabolism of water-soluble vitamins and cofactors View Gene Set 0.003266 47 0.0285 128 REACTOME - Metabolism of water-soluble vitamins and cofactors gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER View Gene Set 0.00344 16 0.02956 129 REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER View Gene Set 0.00344 16 0.02956 129 REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A View Gene Set 0.003525 61 0.02975 131 REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint View Gene Set 0.003543 62 0.02975 131 REACTOME - p53-Independent G1/S DNA damage checkpoint gene set www.pathwaycomm...
Null p53-Independent DNA Damage Response View Gene Set 0.003543 62 0.02975 131 REACTOME - p53-Independent DNA Damage Response gene set www.pathwaycomm...
Null Homologous Recombination Repair View Gene Set 0.003943 22 0.03239 134 REACTOME - Homologous Recombination Repair gene set www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks View Gene Set 0.003943 22 0.03239 134 REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set www.pathwaycomm...
Null Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase View Gene Set 0.003889 16 0.03239 134 REACTOME - Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase gene set www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation View Gene Set 0.004145 29 0.03379 137 REACTOME - RNA Polymerase III Transcription Initiation gene set www.pathwaycomm...
Null Mitochondrial transcription initiation View Gene Set 0.004176 3 0.0338 138 REACTOME - Mitochondrial transcription initiation gene set www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex View Gene Set 0.005076 66 0.04045 139 REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1 View Gene Set 0.005106 59 0.04045 139 REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D View Gene Set 0.005106 59 0.04045 139 REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set www.pathwaycomm...
Null Cap-dependent Translation Initiation View Gene Set 0.005453 113 0.0423 142 REACTOME - Cap-dependent Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Initiation View Gene Set 0.005453 113 0.0423 142 REACTOME - Eukaryotic Translation Initiation gene set www.pathwaycomm...
Null mRNA Decay by 3' to 5' Exoribonuclease View Gene Set 0.005431 11 0.0423 142 REACTOME - mRNA Decay by 3' to 5' Exoribonuclease gene set www.pathwaycomm...
Null G2/M Transition View Gene Set 0.005658 96 0.04359 145 REACTOME - G2/M Transition gene set www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere View Gene Set 0.005856 11 0.04434 146 REACTOME - Processive synthesis on the C-strand of the telomere gene set www.pathwaycomm...
Null Transcription from mitochondrial promoters View Gene Set 0.005803 4 0.04434 146 REACTOME - Transcription from mitochondrial promoters gene set www.pathwaycomm...
Null APC-Cdc20 mediated degradation of Nek2A View Gene Set 0.005875 23 0.04434 146 REACTOME - APC-Cdc20 mediated degradation of Nek2A gene set www.pathwaycomm...
Null Cholesterol biosynthesis View Gene Set 0.006312 20 0.04711 149 REACTOME - Cholesterol biosynthesis gene set www.pathwaycomm...
Null Double-Strand Break Repair View Gene Set 0.006326 27 0.04711 149 REACTOME - Double-Strand Break Repair gene set www.pathwaycomm...
Null Nucleotide Excision Repair View Gene Set 0.00638 51 0.0472 151 REACTOME - Nucleotide Excision Repair gene set www.pathwaycomm...
Null Influenza Infection View Gene Set 0.006471 143 0.04755 152 REACTOME - Influenza Infection gene set www.pathwaycomm...
Null MicroRNA (miRNA) Biogenesis View Gene Set 0.006725 22 0.04815 153 REACTOME - MicroRNA (miRNA) Biogenesis gene set www.pathwaycomm...
Null Regulatory RNA pathways View Gene Set 0.006725 22 0.04815 153 REACTOME - Regulatory RNA pathways gene set www.pathwaycomm...
Null Metabolism of amino acids and derivatives View Gene Set 0.006685 201 0.04815 153 REACTOME - Metabolism of amino acids and derivatives gene set www.pathwaycomm...
Null NF-kB is activated and signals survival View Gene Set 0.006662 13 0.04815 153 REACTOME - NF-kB is activated and signals survival gene set www.pathwaycomm...
Null Formation of the ternary complex and subsequently the 43S complex View Gene Set 0.006976 49 0.04963 157 REACTOME - Formation of the ternary complex and subsequently the 43S complex gene set www.pathwaycomm... and subsequentl... the 43S complex...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-663 View Gene Set 1.667e-05 993 0.01128 1 microRNA targets for hsa-miR-663 from miranda.targets www.mirbase.org...
Null hsa-miR-1268 View Gene Set 7.41e-05 508 0.02508 2 microRNA targets for hsa-miR-1268 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-874 View Gene Set 9.986e-17 722 7.1e-14 1 microRNA targets for hsa-miR-874 from mirbase.targets www.mirbase.org...
Null hsa-miR-886-5p View Gene Set 1.068e-12 793 3.797e-10 2 microRNA targets for hsa-miR-886-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-324-3p View Gene Set 3.078e-12 788 7.296e-10 3 microRNA targets for hsa-miR-324-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 9.291e-12 773 1.652e-09 4 microRNA targets for hsa-miR-486-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-331-3p View Gene Set 4.358e-11 712 6.197e-09 5 microRNA targets for hsa-miR-331-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-484 View Gene Set 1.409e-10 733 1.627e-08 6 microRNA targets for hsa-miR-484 from mirbase.targets www.mirbase.org...
Null hsa-miR-940 View Gene Set 1.602e-10 660 1.627e-08 6 microRNA targets for hsa-miR-940 from mirbase.targets www.mirbase.org...
Null hsa-miR-296-5p View Gene Set 2.139e-10 755 1.69e-08 8 microRNA targets for hsa-miR-296-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-663 View Gene Set 2.063e-10 743 1.69e-08 8 microRNA targets for hsa-miR-663 from mirbase.targets www.mirbase.org...
Null hsa-miR-146b-3p View Gene Set 2.439e-10 695 1.734e-08 10 microRNA targets for hsa-miR-146b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-596 View Gene Set 2.968e-10 644 1.918e-08 11 microRNA targets for hsa-miR-596 from mirbase.targets www.mirbase.org...
Null hsa-miR-125a-5p View Gene Set 3.734e-10 817 2.071e-08 12 microRNA targets for hsa-miR-125a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-615-5p View Gene Set 3.787e-10 848 2.071e-08 12 microRNA targets for hsa-miR-615-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-671-3p View Gene Set 8.09e-10 767 4.109e-08 14 microRNA targets for hsa-miR-671-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-185* View Gene Set 2.716e-09 506 1.287e-07 15 microRNA targets for hsa-miR-185* from mirbase.targets www.mirbase.org...
Null hsa-miR-339-3p View Gene Set 5.818e-09 797 2.585e-07 16 microRNA targets for hsa-miR-339-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-125b View Gene Set 8.47e-09 831 3.542e-07 17 microRNA targets for hsa-miR-125b from mirbase.targets www.mirbase.org...
Null hsa-miR-658 View Gene Set 4.513e-08 660 1.782e-06 18 microRNA targets for hsa-miR-658 from mirbase.targets www.mirbase.org...
Null hsa-miR-654-5p View Gene Set 5.858e-08 718 2.192e-06 19 microRNA targets for hsa-miR-654-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-328 View Gene Set 6.505e-08 685 2.313e-06 20 microRNA targets for hsa-miR-328 from mirbase.targets www.mirbase.org...
Null hsa-miR-662 View Gene Set 6.846e-08 663 2.318e-06 21 microRNA targets for hsa-miR-662 from mirbase.targets www.mirbase.org...
Null hsa-miR-503 View Gene Set 8.678e-08 748 2.805e-06 22 microRNA targets for hsa-miR-503 from mirbase.targets www.mirbase.org...
Null hsa-miR-565 View Gene Set 1.353e-07 689 4.184e-06 23 microRNA targets for hsa-miR-565 from mirbase.targets www.mirbase.org...
Null hsa-miR-566 View Gene Set 1.448e-07 787 4.291e-06 24 microRNA targets for hsa-miR-566 from mirbase.targets www.mirbase.org...
Null hsa-miR-615-3p View Gene Set 2.38e-07 757 6.507e-06 25 microRNA targets for hsa-miR-615-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-941 View Gene Set 2.363e-07 590 6.507e-06 25 microRNA targets for hsa-miR-941 from mirbase.targets www.mirbase.org...
Null hsa-miR-326 View Gene Set 2.81e-07 650 6.89e-06 27 microRNA targets for hsa-miR-326 from mirbase.targets www.mirbase.org...
Null hsa-miR-339-5p View Gene Set 2.633e-07 659 6.89e-06 27 microRNA targets for hsa-miR-339-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-661 View Gene Set 2.781e-07 575 6.89e-06 27 microRNA targets for hsa-miR-661 from mirbase.targets www.mirbase.org...
Null hsa-miR-18a* View Gene Set 3.647e-07 491 8.643e-06 30 microRNA targets for hsa-miR-18a* from mirbase.targets www.mirbase.org...
Null hsa-miR-572 View Gene Set 3.858e-07 602 8.848e-06 31 microRNA targets for hsa-miR-572 from mirbase.targets www.mirbase.org...
Null hsa-miR-611 View Gene Set 4.121e-07 671 9.157e-06 32 microRNA targets for hsa-miR-611 from mirbase.targets www.mirbase.org...
Null hsa-miR-214 View Gene Set 5.284e-07 797 1.105e-05 33 microRNA targets for hsa-miR-214 from mirbase.targets www.mirbase.org...
Null hsa-miR-671-5p View Gene Set 5.185e-07 813 1.105e-05 33 microRNA targets for hsa-miR-671-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-92b* View Gene Set 6.057e-07 648 1.231e-05 35 microRNA targets for hsa-miR-92b* from mirbase.targets www.mirbase.org...
Null hsa-miR-483-3p View Gene Set 8.39e-07 702 1.657e-05 36 microRNA targets for hsa-miR-483-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-504 View Gene Set 1.353e-06 621 2.599e-05 37 microRNA targets for hsa-miR-504 from mirbase.targets www.mirbase.org...
Null hsa-miR-564 View Gene Set 1.435e-06 706 2.685e-05 38 microRNA targets for hsa-miR-564 from mirbase.targets www.mirbase.org...
Null hsa-miR-770-5p View Gene Set 1.871e-06 702 3.325e-05 39 microRNA targets for hsa-miR-770-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-939 View Gene Set 1.859e-06 667 3.325e-05 39 microRNA targets for hsa-miR-939 from mirbase.targets www.mirbase.org...
Null hsa-miR-873 View Gene Set 2.215e-06 752 3.841e-05 41 microRNA targets for hsa-miR-873 from mirbase.targets www.mirbase.org...
Null hsa-miR-423-5p View Gene Set 2.295e-06 767 3.885e-05 42 microRNA targets for hsa-miR-423-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-885-3p View Gene Set 2.541e-06 799 4.201e-05 43 microRNA targets for hsa-miR-885-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-99b View Gene Set 2.621e-06 708 4.235e-05 44 microRNA targets for hsa-miR-99b from mirbase.targets www.mirbase.org...
Null hsa-miR-650 View Gene Set 3.17e-06 693 5.009e-05 45 microRNA targets for hsa-miR-650 from mirbase.targets www.mirbase.org...
Null hsa-miR-560 View Gene Set 3.513e-06 730 5.43e-05 46 microRNA targets for hsa-miR-560 from mirbase.targets www.mirbase.org...
Null hsa-miR-214* View Gene Set 4.497e-06 434 6.803e-05 47 microRNA targets for hsa-miR-214* from mirbase.targets www.mirbase.org...
Null hsa-miR-637 View Gene Set 5.231e-06 672 7.748e-05 48 microRNA targets for hsa-miR-637 from mirbase.targets www.mirbase.org...
Null hsa-miR-760 View Gene Set 5.893e-06 690 8.552e-05 49 microRNA targets for hsa-miR-760 from mirbase.targets www.mirbase.org...
Null hsa-miR-330-5p View Gene Set 9.458e-06 728 0.0001345 50 microRNA targets for hsa-miR-330-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-933 View Gene Set 9.946e-06 618 0.0001387 51 microRNA targets for hsa-miR-933 from mirbase.targets www.mirbase.org...
Null hsa-miR-346 View Gene Set 1.066e-05 568 0.0001457 52 microRNA targets for hsa-miR-346 from mirbase.targets www.mirbase.org...
Null hsa-miR-132* View Gene Set 1.216e-05 481 0.0001631 53 microRNA targets for hsa-miR-132* from mirbase.targets www.mirbase.org...
Null hsa-miR-602 View Gene Set 1.274e-05 710 0.0001678 54 microRNA targets for hsa-miR-602 from mirbase.targets www.mirbase.org...
Null hsa-miR-486-5p View Gene Set 1.546e-05 729 0.0001999 55 microRNA targets for hsa-miR-486-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-665 View Gene Set 1.624e-05 617 0.0002061 56 microRNA targets for hsa-miR-665 from mirbase.targets www.mirbase.org...
Null hsa-miR-604 View Gene Set 2.068e-05 691 0.0002579 57 microRNA targets for hsa-miR-604 from mirbase.targets www.mirbase.org...
Null hsa-miR-766 View Gene Set 2.471e-05 517 0.000303 58 microRNA targets for hsa-miR-766 from mirbase.targets www.mirbase.org...
Null hsa-miR-612 View Gene Set 2.839e-05 685 0.0003422 59 microRNA targets for hsa-miR-612 from mirbase.targets www.mirbase.org...
Null hsa-miR-675 View Gene Set 3.235e-05 686 0.0003833 60 microRNA targets for hsa-miR-675 from mirbase.targets www.mirbase.org...
Null hsa-miR-423-3p View Gene Set 3.534e-05 741 0.0004119 61 microRNA targets for hsa-miR-423-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-541 View Gene Set 4.215e-05 711 0.0004834 62 microRNA targets for hsa-miR-541 from mirbase.targets www.mirbase.org...
Null hsa-miR-345 View Gene Set 4.386e-05 696 0.000495 63 microRNA targets for hsa-miR-345 from mirbase.targets www.mirbase.org...
Null hsa-miR-635 View Gene Set 4.704e-05 648 0.0005226 64 microRNA targets for hsa-miR-635 from mirbase.targets www.mirbase.org...
Null hsa-miR-296-3p View Gene Set 5.26e-05 905 0.0005753 65 microRNA targets for hsa-miR-296-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-646 View Gene Set 5.355e-05 745 0.0005769 66 microRNA targets for hsa-miR-646 from mirbase.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 5.667e-05 729 0.0006014 67 microRNA targets for hsa-miR-608 from mirbase.targets www.mirbase.org...
Null hsa-miR-518a-3p View Gene Set 6.213e-05 925 0.0006496 68 microRNA targets for hsa-miR-518a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-125a-3p View Gene Set 6.742e-05 829 0.0006947 69 microRNA targets for hsa-miR-125a-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-937 View Gene Set 7.075e-05 654 0.0007186 70 microRNA targets for hsa-miR-937 from mirbase.targets www.mirbase.org...
Null hsa-miR-634 View Gene Set 7.315e-05 714 0.0007325 71 microRNA targets for hsa-miR-634 from mirbase.targets www.mirbase.org...
Null hsa-miR-191* View Gene Set 7.429e-05 462 0.0007336 72 microRNA targets for hsa-miR-191* from mirbase.targets www.mirbase.org...
Null hsa-miR-631 View Gene Set 7.984e-05 714 0.0007776 73 microRNA targets for hsa-miR-631 from mirbase.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 8.485e-05 770 0.000797 74 microRNA targets for hsa-miR-133b from mirbase.targets www.mirbase.org...
Null hsa-miR-652 View Gene Set 8.519e-05 662 0.000797 74 microRNA targets for hsa-miR-652 from mirbase.targets www.mirbase.org...
Null hsa-miR-920 View Gene Set 8.356e-05 661 0.000797 74 microRNA targets for hsa-miR-920 from mirbase.targets www.mirbase.org...
Null hsa-miR-492 View Gene Set 8.66e-05 625 0.0007996 77 microRNA targets for hsa-miR-492 from mirbase.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 9.032e-05 763 0.0008233 78 microRNA targets for hsa-miR-133a from mirbase.targets www.mirbase.org...
Null hsa-miR-638 View Gene Set 0.0001125 639 0.0009752 79 microRNA targets for hsa-miR-638 from mirbase.targets www.mirbase.org...
Null hsa-miR-657 View Gene Set 0.0001089 718 0.0009752 79 microRNA targets for hsa-miR-657 from mirbase.targets www.mirbase.org...
Null hsa-miR-887 View Gene Set 0.0001124 709 0.0009752 79 microRNA targets for hsa-miR-887 from mirbase.targets www.mirbase.org...
Null hsa-miR-892b View Gene Set 0.0001112 726 0.0009752 79 microRNA targets for hsa-miR-892b from mirbase.targets www.mirbase.org...
Null hsa-miR-455-3p View Gene Set 0.0001175 824 0.001006 83 microRNA targets for hsa-miR-455-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-551a View Gene Set 0.0001325 676 0.001122 84 microRNA targets for hsa-miR-551a from mirbase.targets www.mirbase.org...
Null hsa-miR-220b View Gene Set 0.0001447 852 0.00121 85 microRNA targets for hsa-miR-220b from mirbase.targets www.mirbase.org...
Null hsa-miR-886-3p View Gene Set 0.0001538 745 0.001271 86 microRNA targets for hsa-miR-886-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-502-5p View Gene Set 0.0001783 730 0.001457 87 microRNA targets for hsa-miR-502-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-483-5p View Gene Set 0.0001987 717 0.001605 88 microRNA targets for hsa-miR-483-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-127-3p View Gene Set 0.0002083 653 0.001664 89 microRNA targets for hsa-miR-127-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-767-3p View Gene Set 0.000223 784 0.001762 90 microRNA targets for hsa-miR-767-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-34a View Gene Set 0.0002518 917 0.001926 91 microRNA targets for hsa-miR-34a from mirbase.targets www.mirbase.org...
Null hsa-miR-505* View Gene Set 0.0002544 516 0.001926 91 microRNA targets for hsa-miR-505* from mirbase.targets www.mirbase.org...
Null hsa-miR-636 View Gene Set 0.0002546 600 0.001926 91 microRNA targets for hsa-miR-636 from mirbase.targets www.mirbase.org...
Null hsa-miR-922 View Gene Set 0.0002495 721 0.001926 91 microRNA targets for hsa-miR-922 from mirbase.targets www.mirbase.org...
Null hsa-miR-744 View Gene Set 0.0002887 715 0.002161 95 microRNA targets for hsa-miR-744 from mirbase.targets www.mirbase.org...
Null hsa-miR-769-3p View Gene Set 0.000308 823 0.002281 96 microRNA targets for hsa-miR-769-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-532-3p View Gene Set 0.0003396 657 0.002489 97 microRNA targets for hsa-miR-532-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-370 View Gene Set 0.0004119 710 0.002989 98 microRNA targets for hsa-miR-370 from mirbase.targets www.mirbase.org...
Null hsa-miR-923 View Gene Set 0.0004888 690 0.003511 99 microRNA targets for hsa-miR-923 from mirbase.targets www.mirbase.org...
Null hsa-miR-323-5p View Gene Set 0.0005095 763 0.003623 100 microRNA targets for hsa-miR-323-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-769-5p View Gene Set 0.0005166 790 0.003636 101 microRNA targets for hsa-miR-769-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-593 View Gene Set 0.0005401 556 0.003765 102 microRNA targets for hsa-miR-593 from mirbase.targets www.mirbase.org...
Null hsa-miR-106b* View Gene Set 0.0005657 562 0.003905 103 microRNA targets for hsa-miR-106b* from mirbase.targets www.mirbase.org...
Null hsa-miR-149 View Gene Set 0.0005886 602 0.003948 104 microRNA targets for hsa-miR-149 from mirbase.targets www.mirbase.org...
Null hsa-miR-220c View Gene Set 0.0005782 831 0.003948 104 microRNA targets for hsa-miR-220c from mirbase.targets www.mirbase.org...
Null hsa-miR-23a* View Gene Set 0.0005879 604 0.003948 104 microRNA targets for hsa-miR-23a* from mirbase.targets www.mirbase.org...
Null hsa-miR-324-5p View Gene Set 0.0006051 801 0.004021 107 microRNA targets for hsa-miR-324-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-193b View Gene Set 0.0006512 716 0.004287 108 microRNA targets for hsa-miR-193b from mirbase.targets www.mirbase.org...
Null hsa-miR-149* View Gene Set 0.0006825 459 0.004452 109 microRNA targets for hsa-miR-149* from mirbase.targets www.mirbase.org...
Null hsa-let-7d View Gene Set 0.000693 796 0.004479 110 microRNA targets for hsa-let-7d from mirbase.targets www.mirbase.org...
Null hsa-miR-150 View Gene Set 0.0007478 595 0.004761 111 microRNA targets for hsa-miR-150 from mirbase.targets www.mirbase.org...
Null hsa-miR-99a View Gene Set 0.00075 665 0.004761 111 microRNA targets for hsa-miR-99a from mirbase.targets www.mirbase.org...
Null hsa-miR-29b View Gene Set 0.000775 848 0.004876 113 microRNA targets for hsa-miR-29b from mirbase.targets www.mirbase.org...
Null hsa-let-7f View Gene Set 0.0007972 753 0.004972 114 microRNA targets for hsa-let-7f from mirbase.targets www.mirbase.org...
Null hsa-miR-29c View Gene Set 0.0008958 867 0.005539 115 microRNA targets for hsa-miR-29c from mirbase.targets www.mirbase.org...
Null hsa-miR-342-5p View Gene Set 0.0009195 698 0.005636 116 microRNA targets for hsa-miR-342-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-197 View Gene Set 0.0009391 609 0.005707 117 microRNA targets for hsa-miR-197 from mirbase.targets www.mirbase.org...
Null hsa-miR-512-5p View Gene Set 0.0009656 693 0.005818 118 microRNA targets for hsa-miR-512-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-29a View Gene Set 0.001016 828 0.006018 119 microRNA targets for hsa-miR-29a from mirbase.targets www.mirbase.org...
Null hsa-miR-554 View Gene Set 0.001012 708 0.006018 119 microRNA targets for hsa-miR-554 from mirbase.targets www.mirbase.org...
Null hsa-miR-181c* View Gene Set 0.001151 691 0.006764 121 microRNA targets for hsa-miR-181c* from mirbase.targets www.mirbase.org...
Null hsa-miR-523 View Gene Set 0.001187 655 0.006916 122 microRNA targets for hsa-miR-523 from mirbase.targets www.mirbase.org...
Null hsa-miR-525-3p View Gene Set 0.001298 790 0.007443 123 microRNA targets for hsa-miR-525-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-647 View Gene Set 0.001293 724 0.007443 123 microRNA targets for hsa-miR-647 from mirbase.targets www.mirbase.org...
Null hsa-miR-639 View Gene Set 0.00134 561 0.00762 125 microRNA targets for hsa-miR-639 from mirbase.targets www.mirbase.org...
Null hsa-miR-24 View Gene Set 0.001358 739 0.007662 126 microRNA targets for hsa-miR-24 from mirbase.targets www.mirbase.org...
Null hsa-let-7e View Gene Set 0.001561 778 0.008739 127 microRNA targets for hsa-let-7e from mirbase.targets www.mirbase.org...
Null hsa-miR-92a-2* View Gene Set 0.001599 654 0.008884 128 microRNA targets for hsa-miR-92a-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-220 View Gene Set 0.001643 748 0.009057 129 microRNA targets for hsa-miR-220 from mirbase.targets www.mirbase.org...
Null hsa-miR-139-3p View Gene Set 0.001806 736 0.009879 130 microRNA targets for hsa-miR-139-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-632 View Gene Set 0.001833 690 0.00995 131 microRNA targets for hsa-miR-632 from mirbase.targets www.mirbase.org...
Null hsa-miR-485-5p View Gene Set 0.001858 556 0.01001 132 microRNA targets for hsa-miR-485-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-92a-1* View Gene Set 0.001917 661 0.01025 133 microRNA targets for hsa-miR-92a-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-181a-2* View Gene Set 0.002011 742 0.01067 134 microRNA targets for hsa-miR-181a-2* from mirbase.targets www.mirbase.org...
Null hsa-miR-935 View Gene Set 0.002038 689 0.01073 135 microRNA targets for hsa-miR-935 from mirbase.targets www.mirbase.org...
Null hsa-miR-877* View Gene Set 0.00207 479 0.01082 136 microRNA targets for hsa-miR-877* from mirbase.targets www.mirbase.org...
Null hsa-miR-574-3p View Gene Set 0.002227 803 0.01156 137 microRNA targets for hsa-miR-574-3p from mirbase.targets www.mirbase.org...
Null hsa-let-7c View Gene Set 0.002386 760 0.01229 138 microRNA targets for hsa-let-7c from mirbase.targets www.mirbase.org...
Null hsa-miR-412 View Gene Set 0.002494 627 0.01276 139 microRNA targets for hsa-miR-412 from mirbase.targets www.mirbase.org...
Null hsa-miR-449a View Gene Set 0.002541 749 0.01284 140 microRNA targets for hsa-miR-449a from mirbase.targets www.mirbase.org...
Null hsa-miR-490-3p View Gene Set 0.002546 685 0.01284 140 microRNA targets for hsa-miR-490-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-30b* View Gene Set 0.002739 655 0.01371 142 microRNA targets for hsa-miR-30b* from mirbase.targets www.mirbase.org...
Null hsa-miR-551b View Gene Set 0.002838 665 0.01411 143 microRNA targets for hsa-miR-551b from mirbase.targets www.mirbase.org...
Null hsa-miR-25* View Gene Set 0.002939 418 0.01451 144 microRNA targets for hsa-miR-25* from mirbase.targets www.mirbase.org...
Null hsa-miR-188-3p View Gene Set 0.003024 637 0.01483 145 microRNA targets for hsa-miR-188-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-767-5p View Gene Set 0.003093 669 0.01506 146 microRNA targets for hsa-miR-767-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-185 View Gene Set 0.003131 607 0.01514 147 microRNA targets for hsa-miR-185 from mirbase.targets www.mirbase.org...
Null hsa-miR-524-3p View Gene Set 0.003273 791 0.01572 148 microRNA targets for hsa-miR-524-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-188-5p View Gene Set 0.00339 732 0.01615 149 microRNA targets for hsa-miR-188-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-361-3p View Gene Set 0.003407 634 0.01615 149 microRNA targets for hsa-miR-361-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-497 View Gene Set 0.003522 805 0.01658 151 microRNA targets for hsa-miR-497 from mirbase.targets www.mirbase.org...
Null hsa-miR-938 View Gene Set 0.003724 652 0.01742 152 microRNA targets for hsa-miR-938 from mirbase.targets www.mirbase.org...
Null hsa-miR-593* View Gene Set 0.00405 504 0.01882 153 microRNA targets for hsa-miR-593* from mirbase.targets www.mirbase.org...
Null hsa-miR-642 View Gene Set 0.004082 609 0.01885 154 microRNA targets for hsa-miR-642 from mirbase.targets www.mirbase.org...
Null hsa-miR-589* View Gene Set 0.004234 515 0.01942 155 microRNA targets for hsa-miR-589* from mirbase.targets www.mirbase.org...
Null hsa-miR-138 View Gene Set 0.004373 730 0.01993 156 microRNA targets for hsa-miR-138 from mirbase.targets www.mirbase.org...
Null hsa-miR-22 View Gene Set 0.004491 776 0.02034 157 microRNA targets for hsa-miR-22 from mirbase.targets www.mirbase.org...
Null hsa-miR-518d-3p View Gene Set 0.00456 916 0.02052 158 microRNA targets for hsa-miR-518d-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-510 View Gene Set 0.004982 639 0.02228 159 microRNA targets for hsa-miR-510 from mirbase.targets www.mirbase.org...
Null hsa-miR-342-3p View Gene Set 0.005321 749 0.02364 160 microRNA targets for hsa-miR-342-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-525-5p View Gene Set 0.005361 784 0.02367 161 microRNA targets for hsa-miR-525-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-424 View Gene Set 0.005417 772 0.02377 162 microRNA targets for hsa-miR-424 from mirbase.targets www.mirbase.org...
Null hsa-miR-193a-5p View Gene Set 0.00569 767 0.02482 163 microRNA targets for hsa-miR-193a-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-518c* View Gene Set 0.006361 606 0.02758 164 microRNA targets for hsa-miR-518c* from mirbase.targets www.mirbase.org...
Null hsa-miR-34c-5p View Gene Set 0.006534 879 0.02815 165 microRNA targets for hsa-miR-34c-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-491-5p View Gene Set 0.006598 731 0.02826 166 microRNA targets for hsa-miR-491-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-450b-3p View Gene Set 0.006707 738 0.02855 167 microRNA targets for hsa-miR-450b-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-30c-1* View Gene Set 0.006873 741 0.02909 168 microRNA targets for hsa-miR-30c-1* from mirbase.targets www.mirbase.org...
Null hsa-miR-300 View Gene Set 0.007015 672 0.02948 169 microRNA targets for hsa-miR-300 from mirbase.targets www.mirbase.org...
Null hsa-miR-371-3p View Gene Set 0.007049 750 0.02948 169 microRNA targets for hsa-miR-371-3p from mirbase.targets www.mirbase.org...
Null hsa-miR-194* View Gene Set 0.007186 502 0.02988 171 microRNA targets for hsa-miR-194* from mirbase.targets www.mirbase.org...
Null hsa-miR-449b View Gene Set 0.007784 786 0.03206 172 microRNA targets for hsa-miR-449b from mirbase.targets www.mirbase.org...
Null hsa-miR-518e View Gene Set 0.007801 923 0.03206 172 microRNA targets for hsa-miR-518e from mirbase.targets www.mirbase.org...
Null hsa-let-7a View Gene Set 0.008104 808 0.03311 174 microRNA targets for hsa-let-7a from mirbase.targets www.mirbase.org...
Null hsa-miR-493 View Gene Set 0.00884 755 0.03592 175 microRNA targets for hsa-miR-493 from mirbase.targets www.mirbase.org...
Null hsa-miR-184 View Gene Set 0.009188 713 0.03712 176 microRNA targets for hsa-miR-184 from mirbase.targets www.mirbase.org...
Null hsa-miR-134 View Gene Set 0.0114 703 0.0458 177 microRNA targets for hsa-miR-134 from mirbase.targets www.mirbase.org...
Null hsa-miR-195 View Gene Set 0.01239 714 0.04949 178 microRNA targets for hsa-miR-195 from mirbase.targets www.mirbase.org...

Gene Set Collection: tarbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-let-7b View Gene Set 0.0003567 83 0.009096 1 microRNA targets for hsa-let-7b from tarbase.targets www.mirbase.org...
Null hsa-miR-16 View Gene Set 0.0002851 91 0.009096 1 microRNA targets for hsa-miR-16 from tarbase.targets www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 View Gene Set 5.84e-12 1582 1.351e-08 1 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p View Gene Set 8.238e-09 1187 9.531e-06 2 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p View Gene Set 2.979e-08 1044 2.177e-05 3 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572 View Gene Set 3.763e-08 825 2.177e-05 3 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 1.078e-07 1941 4.157e-05 5 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p View Gene Set 9.803e-08 1096 4.157e-05 5 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p View Gene Set 3.762e-07 1764 8.149e-05 7 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p View Gene Set 3.874e-07 2545 8.149e-05 7 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-3p View Gene Set 2.875e-07 1092 8.149e-05 7 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p View Gene Set 3.786e-07 764 8.149e-05 7 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874 View Gene Set 2.636e-07 975 8.149e-05 7 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p View Gene Set 5.419e-07 1112 0.0001045 12 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p View Gene Set 6.262e-07 1113 0.000109 13 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 View Gene Set 6.593e-07 872 0.000109 13 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p View Gene Set 8.141e-07 1519 0.0001256 15 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p View Gene Set 9.02e-07 1946 0.0001305 16 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-99b View Gene Set 1.025e-06 744 0.0001396 17 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-99b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p View Gene Set 1.143e-06 1865 0.000147 18 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-662 View Gene Set 1.311e-06 984 0.0001584 19 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-662 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-99b View Gene Set 1.369e-06 744 0.0001584 19 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-99b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-99b View Gene Set 1.557e-06 734 0.0001716 21 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-99b from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 View Gene Set 5.15e-06 916 0.0005417 22 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 View Gene Set 6.65e-06 2504 0.000669 23 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p View Gene Set 7.163e-06 1681 0.0006906 24 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-346 View Gene Set 7.668e-06 704 0.0007098 25 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 View Gene Set 8.643e-06 946 0.0007407 26 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-503 View Gene Set 8.375e-06 1021 0.0007407 26 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-503 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p View Gene Set 9.642e-06 954 0.0007968 28 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p View Gene Set 1.165e-05 1375 0.0009299 29 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 View Gene Set 1.237e-05 1389 0.0009538 30 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 View Gene Set 1.324e-05 1071 0.0009728 31 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-941 View Gene Set 1.345e-05 992 0.0009728 31 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-941 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-566 View Gene Set 1.667e-05 1066 0.001169 33 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-566 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p View Gene Set 1.803e-05 1053 0.001227 34 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-99b View Gene Set 1.979e-05 816 0.001308 35 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-99b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 View Gene Set 2.283e-05 1806 0.001468 36 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-99b View Gene Set 2.469e-05 806 0.001544 37 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-99b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604 View Gene Set 2.56e-05 1079 0.001559 38 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-99b View Gene Set 2.897e-05 808 0.001676 39 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-99b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b View Gene Set 2.834e-05 1376 0.001676 39 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 View Gene Set 3.108e-05 1484 0.001754 41 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-346 View Gene Set 3.681e-05 746 0.002028 42 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 View Gene Set 4.408e-05 834 0.002372 43 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-504 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-484 View Gene Set 4.675e-05 1853 0.002458 44 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-484 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 View Gene Set 5.582e-05 1017 0.00287 45 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 View Gene Set 5.868e-05 1840 0.002952 46 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-346 View Gene Set 8.886e-05 742 0.004375 47 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-346 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 View Gene Set 9.4e-05 820 0.004532 48 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 View Gene Set 0.0001024 1858 0.004838 49 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p View Gene Set 0.0001215 1485 0.005622 50 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 View Gene Set 0.0001356 2615 0.006154 51 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146b-3p View Gene Set 0.0001512 1606 0.006728 52 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-146b-3p from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p View Gene Set 0.0001615 1618 0.007051 53 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-127-3p View Gene Set 0.0001851 662 0.007933 54 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-127-3p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-99a View Gene Set 0.0002431 700 0.01023 55 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-99a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-551a View Gene Set 0.0002507 687 0.01036 56 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-551a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 View Gene Set 0.0002677 1838 0.01087 57 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 View Gene Set 0.0002783 1378 0.01094 58 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 View Gene Set 0.0002789 1071 0.01094 58 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 View Gene Set 0.0003215 1420 0.0124 60 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 View Gene Set 0.0003788 1108 0.01414 61 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-125b View Gene Set 0.0003757 1421 0.01414 61 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-652 View Gene Set 0.0003912 846 0.01414 63 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-652 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-328 View Gene Set 0.0003885 1892 0.01414 63 microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 View Gene Set 0.000422 2252 0.01502 65 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b View Gene Set 0.0004641 1252 0.01627 66 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 View Gene Set 0.0005676 1066 0.0196 67 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-639 View Gene Set 0.0006159 1005 0.02096 68 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-639 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-99a View Gene Set 0.0006309 692 0.02116 69 microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-99a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-486-5p View Gene Set 0.0006592 895 0.02148 70 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-486-5p from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-873 View Gene Set 0.0006514 1102 0.02148 70 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-873 from miRNAtargetUnion www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-99a View Gene Set 0.0006785 701 0.02181 72 microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-99a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-503 View Gene Set 0.0007592 1589 0.02381 73 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-503 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-99a View Gene Set 0.0007615 805 0.02381 73 microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-99a from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214 View Gene Set 0.0007888 1354 0.02413 75 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-370 View Gene Set 0.0007925 1067 0.02413 75 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-370 from miRNAtargetUnion www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 View Gene Set 0.0008785 1065 0.0264 77 microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 View Gene Set 0.001014 3384 0.0301 78 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-887 View Gene Set 0.001229 855 0.036 79 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-887 from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-99a View Gene Set 0.001407 797 0.04071 80 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-99a from miRNAtargetUnion www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p View Gene Set 0.001709 1899 0.04882 81 microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion www.mirbase.org...

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null V_MYCMAX_01 View Gene Set 5.1e-06 136 0.001086 1 List of genes containing a conserved (FDR < 0.1%) V$MYCMAX_01 TFBS located within 3 kb around the TSS for the c-Myc transcription factor www.gene-regula...
Null V_E2F_02 View Gene Set 3.456e-05 134 0.003681 2 List of genes containing a conserved (FDR < 0.1%) V$E2F_02 TFBS located within 3 kb around the TSS for the E2F transcription factor www.gene-regula...