AFA results for: tVPAda4PC3

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Go to: Gene Set Collection: tfbsK3Z3

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
KEGG 03040	View Gene Set	1.172e-24	128	2.509e-22	1	Spliceosome	www.genome.jp/d...
KEGG 00970	View Gene Set	2.289e-14	41	2.45e-12	2	Aminoacyl-tRNA biosynthesis	www.genome.jp/d...
KEGG 03018	View Gene Set	1.108e-07	59	7.906e-06	3	RNA degradation	www.genome.jp/d...
KEGG 00240	View Gene Set	3.783e-07	99	1.619e-05	4	Pyrimidine metabolism	www.genome.jp/d...
KEGG 03030	View Gene Set	3.255e-07	36	1.619e-05	4	DNA replication	www.genome.jp/d...
KEGG 03410	View Gene Set	8.565e-07	34	3.055e-05	6	Base excision repair	www.genome.jp/d...
KEGG 03050	View Gene Set	6.202e-06	48	0.0001896	7	Proteasome	www.genome.jp/d...
KEGG 04110	View Gene Set	7.986e-06	128	0.0002136	8	Cell cycle	www.genome.jp/d...
KEGG 00290	View Gene Set	2.335e-05	11	0.0005552	9	Valine leucine and isoleucine biosynthesis	www.genome.jp/d...
KEGG 00310	View Gene Set	3.458e-05	46	0.0007401	10	Lysine degradation	www.genome.jp/d...
KEGG 01100	View Gene Set	4.377e-05	1120	0.0008421	11	Metabolic pathways	www.genome.jp/d...
KEGG 03430	View Gene Set	4.722e-05	23	0.0008421	11	Mismatch repair	www.genome.jp/d...
KEGG 00020	View Gene Set	0.000117	31	0.001926	13	Citrate cycle (TCA cycle)	www.genome.jp/d...
KEGG 00010	View Gene Set	0.000157	64	0.002239	14	Glycolysis / Gluconeogenesis	www.genome.jp/d...
KEGG 03020	View Gene Set	0.0001509	29	0.002239	14	RNA polymerase	www.genome.jp/d...
KEGG 00670	View Gene Set	0.0003094	17	0.004138	16	One carbon pool by folate	www.genome.jp/d...
KEGG 05322	View Gene Set	0.000802	141	0.0101	17	Systemic lupus erythematosus	www.genome.jp/d...
KEGG 00270	View Gene Set	0.000997	34	0.01185	18	Cysteine and methionine metabolism	www.genome.jp/d...
KEGG 00620	View Gene Set	0.001065	40	0.01199	19	Pyruvate metabolism	www.genome.jp/d...
KEGG 05012	View Gene Set	0.001598	132	0.0171	20	Parkinson's disease	www.genome.jp/d...
KEGG 03420	View Gene Set	0.001732	44	0.01765	21	Nucleotide excision repair	www.genome.jp/d...
KEGG 05016	View Gene Set	0.002843	184	0.02766	22	Huntington's disease	www.genome.jp/d...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
GO GO:0006396	View Gene Set	7.377e-81	578	9.856e-77	1	RNA processing	amigo.geneontol...
GO GO:0044428	View Gene Set	4.321e-75	1938	2.886e-71	2	nuclear part	amigo.geneontol...
GO GO:0031974	View Gene Set	5.061e-72	1917	2.254e-68	3	membrane-enclosed lumen	amigo.geneontol...
GO GO:0070013	View Gene Set	2.655e-71	1845	8.869e-68	4	intracellular organelle lumen	amigo.geneontol...
GO GO:0043233	View Gene Set	5.617e-70	1881	1.501e-66	5	organelle lumen	amigo.geneontol...
GO GO:0003723	View Gene Set	3.188e-62	732	7.098e-59	6	RNA binding	amigo.geneontol...
GO GO:0031981	View Gene Set	4.053e-58	1518	7.735e-55	7	nuclear lumen	amigo.geneontol...
GO GO:0030529	View Gene Set	8.844e-51	504	1.477e-47	8	ribonucleoprotein complex	amigo.geneontol...
GO GO:0008380	View Gene Set	7.078e-48	300	9.738e-45	9	RNA splicing	amigo.geneontol...
GO GO:0003676	View Gene Set	7.289e-48	2979	9.738e-45	9	nucleic acid binding	amigo.geneontol...
GO GO:0090304	View Gene Set	7.584e-47	3724	9.211e-44	11	nucleic acid metabolic process	amigo.geneontol...
GO GO:0005634	View Gene Set	1.849e-46	5198	2.058e-43	12	nucleus	amigo.geneontol...
GO GO:0010467	View Gene Set	7.819e-46	3806	8.036e-43	13	gene expression	amigo.geneontol...
GO GO:0016071	View Gene Set	2.59e-45	381	2.472e-42	14	mRNA metabolic process	amigo.geneontol...
GO GO:0034641	View Gene Set	4.192e-45	4584	3.734e-42	15	cellular nitrogen compound metabolic process	amigo.geneontol...
GO GO:0044260	View Gene Set	1.036e-44	5699	8.65e-42	16	cellular macromolecule metabolic process	amigo.geneontol...
GO GO:0006139	View Gene Set	3.677e-43	4294	2.889e-40	17	nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0006807	View Gene Set	9.892e-43	4698	7.342e-40	18	nitrogen compound metabolic process	amigo.geneontol...
GO GO:0034660	View Gene Set	2.277e-42	236	1.601e-39	19	ncRNA metabolic process	amigo.geneontol...
GO GO:0005654	View Gene Set	2.758e-42	939	1.842e-39	20	nucleoplasm	amigo.geneontol...
GO GO:0043170	View Gene Set	9.34e-41	6274	5.942e-38	21	macromolecule metabolic process	amigo.geneontol...
GO GO:0006397	View Gene Set	2.127e-40	317	1.292e-37	22	mRNA processing	amigo.geneontol...
GO GO:0044237	View Gene Set	5.328e-38	7431	3.095e-35	23	cellular metabolic process	amigo.geneontol...
GO GO:0022613	View Gene Set	1.099e-36	194	6.116e-34	24	ribonucleoprotein complex biogenesis	amigo.geneontol...
GO GO:0044238	View Gene Set	2.61e-35	7629	1.395e-32	25	primary metabolic process	amigo.geneontol...
GO GO:0008152	View Gene Set	4.301e-35	8439	2.21e-32	26	metabolic process	amigo.geneontol...
GO GO:0005739	View Gene Set	7.787e-34	1274	3.853e-31	27	mitochondrion	amigo.geneontol...
GO GO:0016070	View Gene Set	2.786e-33	2596	1.33e-30	28	RNA metabolic process	amigo.geneontol...
GO GO:0034470	View Gene Set	2.073e-32	193	9.551e-30	29	ncRNA processing	amigo.geneontol...
GO GO:0005730	View Gene Set	1.619e-29	734	7.209e-27	30	nucleolus	amigo.geneontol...
GO GO:0006412	View Gene Set	9.571e-29	412	4.125e-26	31	translation	amigo.geneontol...
GO GO:0044451	View Gene Set	1.837e-28	600	7.671e-26	32	nucleoplasm part	amigo.geneontol...
GO GO:0032991	View Gene Set	2.536e-27	3237	1.027e-24	33	macromolecular complex	amigo.geneontol...
GO GO:0005759	View Gene Set	4.004e-27	223	1.528e-24	34	mitochondrial matrix	amigo.geneontol...
GO GO:0031980	View Gene Set	4.004e-27	223	1.528e-24	34	mitochondrial lumen	amigo.geneontol...
GO GO:0006399	View Gene Set	6.998e-27	118	2.597e-24	36	tRNA metabolic process	amigo.geneontol...
GO GO:0005681	View Gene Set	1.435e-26	135	5.181e-24	37	spliceosomal complex	amigo.geneontol...
GO GO:0000375	View Gene Set	1.719e-26	106	6.042e-24	38	RNA splicing via transesterification reactions	amigo.geneontol...
GO GO:0043227	View Gene Set	6.07e-26	8383	2.079e-23	39	membrane-bounded organelle	amigo.geneontol...
GO GO:0000166	View Gene Set	9.168e-26	2257	3.062e-23	40	nucleotide binding	amigo.geneontol...
GO GO:0043231	View Gene Set	1.01e-25	8376	3.291e-23	41	intracellular membrane-bounded organelle	amigo.geneontol...
GO GO:0044429	View Gene Set	2.031e-25	619	6.461e-23	42	mitochondrial part	amigo.geneontol...
GO GO:0000377	View Gene Set	2.314e-24	97	7.027e-22	43	RNA splicing via transesterification reactions with bulged adenosine as nucleophile	amigo.geneontol...
GO GO:0000398	View Gene Set	2.314e-24	97	7.027e-22	43	nuclear mRNA splicing via spliceosome	amigo.geneontol...
GO GO:0042254	View Gene Set	1.05e-21	130	3.116e-19	45	ribosome biogenesis	amigo.geneontol...
GO GO:0005694	View Gene Set	2.737e-21	507	7.949e-19	46	chromosome	amigo.geneontol...
GO GO:0044446	View Gene Set	2.736e-20	5019	7.777e-18	47	intracellular organelle part	amigo.geneontol...
GO GO:0006403	View Gene Set	3.08e-20	104	8.573e-18	48	RNA localization	amigo.geneontol...
GO GO:0044249	View Gene Set	4.204e-20	4326	1.146e-17	49	cellular biosynthetic process	amigo.geneontol...
GO GO:0050657	View Gene Set	1.349e-19	102	3.466e-17	50	nucleic acid transport	amigo.geneontol...
GO GO:0050658	View Gene Set	1.349e-19	102	3.466e-17	50	RNA transport	amigo.geneontol...
GO GO:0051236	View Gene Set	1.349e-19	102	3.466e-17	50	establishment of RNA localization	amigo.geneontol...
GO GO:0009058	View Gene Set	1.845e-19	4436	4.651e-17	53	biosynthetic process	amigo.geneontol...
GO GO:0005524	View Gene Set	5.375e-19	1480	1.33e-16	54	ATP binding	amigo.geneontol...
GO GO:0030554	View Gene Set	5.627e-19	1584	1.367e-16	55	adenyl nucleotide binding	amigo.geneontol...
GO GO:0032559	View Gene Set	6.474e-19	1503	1.544e-16	56	adenyl ribonucleotide binding	amigo.geneontol...
GO GO:0022618	View Gene Set	1.225e-18	76	2.872e-16	57	ribonucleoprotein complex assembly	amigo.geneontol...
GO GO:0044422	View Gene Set	1.316e-18	5089	3.031e-16	58	organelle part	amigo.geneontol...
GO GO:0006259	View Gene Set	2.569e-18	592	5.818e-16	59	DNA metabolic process	amigo.geneontol...
GO GO:0015931	View Gene Set	6.26e-18	118	1.394e-15	60	nucleobase nucleoside nucleotide and nucleic acid transport	amigo.geneontol...
GO GO:0001882	View Gene Set	1.719e-17	1630	3.765e-15	61	nucleoside binding	amigo.geneontol...
GO GO:0001883	View Gene Set	2.639e-17	1620	5.687e-15	62	purine nucleoside binding	amigo.geneontol...
GO GO:0016604	View Gene Set	3.491e-17	198	7.403e-15	63	nuclear body	amigo.geneontol...
GO GO:0044427	View Gene Set	4.405e-17	420	9.196e-15	64	chromosomal part	amigo.geneontol...
GO GO:0034645	View Gene Set	4.581e-17	3529	9.416e-15	65	cellular macromolecule biosynthetic process	amigo.geneontol...
GO GO:0009059	View Gene Set	5.945e-17	3597	1.203e-14	66	macromolecule biosynthetic process	amigo.geneontol...
GO GO:0051028	View Gene Set	9.46e-17	90	1.886e-14	67	mRNA transport	amigo.geneontol...
GO GO:0051276	View Gene Set	1.093e-16	548	2.147e-14	68	chromosome organization	amigo.geneontol...
GO GO:0043226	View Gene Set	3.479e-16	9360	6.736e-14	69	organelle	amigo.geneontol...
GO GO:0043229	View Gene Set	3.59e-16	9346	6.852e-14	70	intracellular organelle	amigo.geneontol...
GO GO:0016072	View Gene Set	3.913e-16	101	7.363e-14	71	rRNA metabolic process	amigo.geneontol...
GO GO:0043228	View Gene Set	5.302e-16	2690	9.704e-14	72	non-membrane-bounded organelle	amigo.geneontol...
GO GO:0043232	View Gene Set	5.302e-16	2690	9.704e-14	72	intracellular non-membrane-bounded organelle	amigo.geneontol...
GO GO:0031967	View Gene Set	8.823e-16	672	1.593e-13	74	organelle envelope	amigo.geneontol...
GO GO:0008033	View Gene Set	1.118e-15	78	1.992e-13	75	tRNA processing	amigo.geneontol...
GO GO:0005840	View Gene Set	1.431e-15	198	2.515e-13	76	ribosome	amigo.geneontol...
GO GO:0006364	View Gene Set	2.321e-15	97	4.027e-13	77	rRNA processing	amigo.geneontol...
GO GO:0004812	View Gene Set	6.923e-15	46	1.156e-12	78	aminoacyl-tRNA ligase activity	amigo.geneontol...
GO GO:0016875	View Gene Set	6.923e-15	46	1.156e-12	78	ligase activity forming carbon-oxygen bonds	amigo.geneontol...
GO GO:0016876	View Gene Set	6.923e-15	46	1.156e-12	78	ligase activity forming aminoacyl-tRNA and related compounds	amigo.geneontol...
GO GO:0044424	View Gene Set	8.762e-15	10976	1.445e-12	81	intracellular part	amigo.geneontol...
GO GO:0000313	View Gene Set	1.182e-14	49	1.903e-12	82	organellar ribosome	amigo.geneontol...
GO GO:0005761	View Gene Set	1.182e-14	49	1.903e-12	82	mitochondrial ribosome	amigo.geneontol...
GO GO:0003824	View Gene Set	1.325e-14	5198	2.107e-12	84	catalytic activity	amigo.geneontol...
GO GO:0006418	View Gene Set	1.461e-14	45	2.244e-12	85	tRNA aminoacylation for protein translation	amigo.geneontol...
GO GO:0043038	View Gene Set	1.461e-14	45	2.244e-12	85	amino acid activation	amigo.geneontol...
GO GO:0043039	View Gene Set	1.461e-14	45	2.244e-12	85	tRNA aminoacylation	amigo.geneontol...
GO GO:0031975	View Gene Set	2.01e-14	685	3.051e-12	88	envelope	amigo.geneontol...
GO GO:0000278	View Gene Set	2.25e-14	489	3.378e-12	89	mitotic cell cycle	amigo.geneontol...
GO GO:0004386	View Gene Set	4.07e-14	144	6.042e-12	90	helicase activity	amigo.geneontol...
GO GO:0022402	View Gene Set	1.542e-13	676	2.265e-11	91	cell cycle process	amigo.geneontol...
GO GO:0006260	View Gene Set	2.253e-13	239	3.272e-11	92	DNA replication	amigo.geneontol...
GO GO:0006974	View Gene Set	2.967e-13	412	4.263e-11	93	response to DNA damage stimulus	amigo.geneontol...
GO GO:0032553	View Gene Set	3.45e-13	1851	4.851e-11	94	ribonucleotide binding	amigo.geneontol...
GO GO:0032555	View Gene Set	3.45e-13	1851	4.851e-11	94	purine ribonucleotide binding	amigo.geneontol...
GO GO:0017076	View Gene Set	3.59e-13	1934	4.996e-11	96	purine nucleotide binding	amigo.geneontol...
GO GO:0005622	View Gene Set	6.511e-13	11329	8.967e-11	97	intracellular	amigo.geneontol...
GO GO:0008135	View Gene Set	1.201e-12	86	1.637e-10	98	translation factor activity nucleic acid binding	amigo.geneontol...
GO GO:0016741	View Gene Set	1.392e-12	179	1.878e-10	99	transferase activity transferring one-carbon groups	amigo.geneontol...
GO GO:0008168	View Gene Set	2.31e-12	176	3.087e-10	100	methyltransferase activity	amigo.geneontol...
GO GO:0006281	View Gene Set	4.057e-12	309	5.367e-10	101	DNA repair	amigo.geneontol...
GO GO:0008026	View Gene Set	5.155e-12	105	6.686e-10	102	ATP-dependent helicase activity	amigo.geneontol...
GO GO:0070035	View Gene Set	5.155e-12	105	6.686e-10	102	purine NTP-dependent helicase activity	amigo.geneontol...
GO GO:0006325	View Gene Set	7.185e-12	425	9.23e-10	104	chromatin organization	amigo.geneontol...
GO GO:0000279	View Gene Set	8.429e-12	406	1.062e-09	105	M phase	amigo.geneontol...
GO GO:0016607	View Gene Set	8.376e-12	116	1.062e-09	105	nuclear speck	amigo.geneontol...
GO GO:0022403	View Gene Set	1.036e-11	522	1.293e-09	107	cell cycle phase	amigo.geneontol...
GO GO:0019866	View Gene Set	1.282e-11	334	1.586e-09	108	organelle inner membrane	amigo.geneontol...
GO GO:0003735	View Gene Set	1.342e-11	158	1.644e-09	109	structural constituent of ribosome	amigo.geneontol...
GO GO:0005740	View Gene Set	2.106e-11	444	2.558e-09	110	mitochondrial envelope	amigo.geneontol...
GO GO:0046930	View Gene Set	2.234e-11	85	2.689e-09	111	pore complex	amigo.geneontol...
GO GO:0048285	View Gene Set	2.798e-11	286	3.337e-09	112	organelle fission	amigo.geneontol...
GO GO:0071103	View Gene Set	3.045e-11	140	3.6e-09	113	DNA conformation change	amigo.geneontol...
GO GO:0005743	View Gene Set	3.109e-11	305	3.644e-09	114	mitochondrial inner membrane	amigo.geneontol...
GO GO:0000785	View Gene Set	3.229e-11	213	3.752e-09	115	chromatin	amigo.geneontol...
GO GO:0006520	View Gene Set	3.458e-11	231	3.983e-09	116	cellular amino acid metabolic process	amigo.geneontol...
GO GO:0005643	View Gene Set	4.615e-11	71	5.269e-09	117	nuclear pore	amigo.geneontol...
GO GO:0044267	View Gene Set	7.053e-11	2465	7.985e-09	118	cellular protein metabolic process	amigo.geneontol...
GO GO:0006261	View Gene Set	8.032e-11	74	9.017e-09	119	DNA-dependent DNA replication	amigo.geneontol...
GO GO:0000280	View Gene Set	8.28e-11	276	9.142e-09	120	nuclear division	amigo.geneontol...
GO GO:0007067	View Gene Set	8.28e-11	276	9.142e-09	120	mitosis	amigo.geneontol...
GO GO:0000793	View Gene Set	9.998e-11	136	1.095e-08	122	condensed chromosome	amigo.geneontol...
GO GO:0000387	View Gene Set	1.093e-10	31	1.187e-08	123	spliceosomal snRNP assembly	amigo.geneontol...
GO GO:0006405	View Gene Set	1.186e-10	44	1.278e-08	124	RNA export from nucleus	amigo.geneontol...
GO GO:0007049	View Gene Set	1.41e-10	1006	1.507e-08	125	cell cycle	amigo.geneontol...
GO GO:0031966	View Gene Set	1.55e-10	420	1.644e-08	126	mitochondrial membrane	amigo.geneontol...
GO GO:0016887	View Gene Set	2.602e-10	339	2.737e-08	127	ATPase activity	amigo.geneontol...
GO GO:0000775	View Gene Set	3.923e-10	146	4.095e-08	128	chromosome centromeric region	amigo.geneontol...
GO GO:0033279	View Gene Set	4.327e-10	121	4.482e-08	129	ribosomal subunit	amigo.geneontol...
GO GO:0034621	View Gene Set	4.849e-10	458	4.983e-08	130	cellular macromolecular complex subunit organization	amigo.geneontol...
GO GO:0044455	View Gene Set	4.899e-10	133	4.997e-08	131	mitochondrial membrane part	amigo.geneontol...
GO GO:0000087	View Gene Set	5.65e-10	286	5.719e-08	132	M phase of mitotic cell cycle	amigo.geneontol...
GO GO:0000245	View Gene Set	1.061e-09	34	1.065e-07	133	spliceosome assembly	amigo.geneontol...
GO GO:0000228	View Gene Set	1.19e-09	177	1.187e-07	134	nuclear chromosome	amigo.geneontol...
GO GO:0016568	View Gene Set	2.847e-09	324	2.817e-07	135	chromatin modification	amigo.geneontol...
GO GO:0006401	View Gene Set	2.881e-09	74	2.83e-07	136	RNA catabolic process	amigo.geneontol...
GO GO:0003743	View Gene Set	4.128e-09	52	4.025e-07	137	translation initiation factor activity	amigo.geneontol...
GO GO:0044085	View Gene Set	4.226e-09	1167	4.092e-07	138	cellular component biogenesis	amigo.geneontol...
GO GO:0040029	View Gene Set	4.687e-09	95	4.505e-07	139	regulation of gene expression epigenetic	amigo.geneontol...
GO GO:0000049	View Gene Set	5.215e-09	24	4.977e-07	140	tRNA binding	amigo.geneontol...
GO GO:0016569	View Gene Set	1.271e-08	165	1.204e-06	141	covalent chromatin modification	amigo.geneontol...
GO GO:0003697	View Gene Set	1.482e-08	58	1.394e-06	142	single-stranded DNA binding	amigo.geneontol...
GO GO:0000502	View Gene Set	1.764e-08	63	1.648e-06	143	proteasome complex	amigo.geneontol...
GO GO:0019538	View Gene Set	1.905e-08	2935	1.767e-06	144	protein metabolic process	amigo.geneontol...
GO GO:0030532	View Gene Set	2.163e-08	32	1.993e-06	145	small nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0015030	View Gene Set	2.258e-08	43	2.066e-06	146	Cajal body	amigo.geneontol...
GO GO:0003677	View Gene Set	2.275e-08	2028	2.068e-06	147	DNA binding	amigo.geneontol...
GO GO:0010605	View Gene Set	2.339e-08	827	2.111e-06	148	negative regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0009451	View Gene Set	2.409e-08	51	2.16e-06	149	RNA modification	amigo.geneontol...
GO GO:0044106	View Gene Set	2.916e-08	314	2.597e-06	150	cellular amine metabolic process	amigo.geneontol...
GO GO:0000779	View Gene Set	3.878e-08	79	3.431e-06	151	condensed chromosome centromeric region	amigo.geneontol...
GO GO:0034622	View Gene Set	4.214e-08	393	3.704e-06	152	cellular macromolecular complex assembly	amigo.geneontol...
GO GO:0006406	View Gene Set	4.489e-08	34	3.92e-06	153	mRNA export from nucleus	amigo.geneontol...
GO GO:0006333	View Gene Set	5.29e-08	129	4.589e-06	154	chromatin assembly or disassembly	amigo.geneontol...
GO GO:0016570	View Gene Set	5.49e-08	162	4.732e-06	155	histone modification	amigo.geneontol...
GO GO:0000776	View Gene Set	6.811e-08	92	5.833e-06	156	kinetochore	amigo.geneontol...
GO GO:0051437	View Gene Set	7.165e-08	64	6.097e-06	157	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0060255	View Gene Set	7.612e-08	3411	6.396e-06	158	regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0005488	View Gene Set	7.586e-08	12334	6.396e-06	158	binding	amigo.geneontol...
GO GO:0009295	View Gene Set	7.919e-08	31	6.572e-06	160	nucleoid	amigo.geneontol...
GO GO:0042645	View Gene Set	7.919e-08	31	6.572e-06	160	mitochondrial nucleoid	amigo.geneontol...
GO GO:0007051	View Gene Set	8.516e-08	57	7.023e-06	162	spindle organization	amigo.geneontol...
GO GO:0043566	View Gene Set	8.763e-08	149	7.182e-06	163	structure-specific DNA binding	amigo.geneontol...
GO GO:0032392	View Gene Set	9.721e-08	19	7.823e-06	164	DNA geometric change	amigo.geneontol...
GO GO:0032508	View Gene Set	9.721e-08	19	7.823e-06	164	DNA duplex unwinding	amigo.geneontol...
GO GO:0045333	View Gene Set	9.646e-08	100	7.823e-06	164	cellular respiration	amigo.geneontol...
GO GO:0009892	View Gene Set	1.059e-07	889	8.472e-06	167	negative regulation of metabolic process	amigo.geneontol...
GO GO:0010608	View Gene Set	1.209e-07	247	9.616e-06	168	posttranscriptional regulation of gene expression	amigo.geneontol...
GO GO:0044265	View Gene Set	1.26e-07	479	9.963e-06	169	cellular macromolecule catabolic process	amigo.geneontol...
GO GO:0000777	View Gene Set	1.647e-07	74	1.295e-05	170	condensed chromosome kinetochore	amigo.geneontol...
GO GO:0000315	View Gene Set	1.691e-07	18	1.314e-05	171	organellar large ribosomal subunit	amigo.geneontol...
GO GO:0005762	View Gene Set	1.691e-07	18	1.314e-05	171	mitochondrial large ribosomal subunit	amigo.geneontol...
GO GO:0031145	View Gene Set	1.768e-07	64	1.366e-05	173	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	amigo.geneontol...
GO GO:0044454	View Gene Set	1.843e-07	139	1.415e-05	174	nuclear chromosome part	amigo.geneontol...
GO GO:0030880	View Gene Set	1.931e-07	25	1.474e-05	175	RNA polymerase complex	amigo.geneontol...
GO GO:0043933	View Gene Set	2.059e-07	836	1.563e-05	176	macromolecular complex subunit organization	amigo.geneontol...
GO GO:0051436	View Gene Set	2.35e-07	62	1.774e-05	177	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0004518	View Gene Set	2.476e-07	161	1.859e-05	178	nuclease activity	amigo.geneontol...
GO GO:0051439	View Gene Set	2.617e-07	68	1.954e-05	179	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	amigo.geneontol...
GO GO:0006732	View Gene Set	2.659e-07	164	1.974e-05	180	coenzyme metabolic process	amigo.geneontol...
GO GO:0051352	View Gene Set	2.809e-07	66	2.062e-05	181	negative regulation of ligase activity	amigo.geneontol...
GO GO:0051444	View Gene Set	2.809e-07	66	2.062e-05	181	negative regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0006473	View Gene Set	2.843e-07	61	2.076e-05	183	protein amino acid acetylation	amigo.geneontol...
GO GO:0000184	View Gene Set	3.005e-07	30	2.182e-05	184	nuclear-transcribed mRNA catabolic process nonsense-mediated decay	amigo.geneontol...
GO GO:0009987	View Gene Set	3.618e-07	11620	2.613e-05	185	cellular process	amigo.geneontol...
GO GO:0043234	View Gene Set	3.939e-07	2680	2.829e-05	186	protein complex	amigo.geneontol...
GO GO:0000428	View Gene Set	4.662e-07	24	3.313e-05	187	DNA-directed RNA polymerase complex	amigo.geneontol...
GO GO:0055029	View Gene Set	4.662e-07	24	3.313e-05	187	nuclear DNA-directed RNA polymerase complex	amigo.geneontol...
GO GO:0051168	View Gene Set	5.339e-07	71	3.774e-05	189	nuclear export	amigo.geneontol...
GO GO:0006996	View Gene Set	5.933e-07	1501	4.171e-05	190	organelle organization	amigo.geneontol...
GO GO:0051443	View Gene Set	6.8e-07	71	4.756e-05	191	positive regulation of ubiquitin-protein ligase activity	amigo.geneontol...
GO GO:0003682	View Gene Set	7.08e-07	178	4.927e-05	192	chromatin binding	amigo.geneontol...
GO GO:0005819	View Gene Set	7.174e-07	167	4.966e-05	193	spindle	amigo.geneontol...
GO GO:0016740	View Gene Set	7.487e-07	1691	5.156e-05	194	transferase activity	amigo.geneontol...
GO GO:0000314	View Gene Set	8.329e-07	18	5.678e-05	195	organellar small ribosomal subunit	amigo.geneontol...
GO GO:0005763	View Gene Set	8.329e-07	18	5.678e-05	195	mitochondrial small ribosomal subunit	amigo.geneontol...
GO GO:0006519	View Gene Set	8.775e-07	371	5.951e-05	197	cellular amino acid and derivative metabolic process	amigo.geneontol...
GO GO:0051351	View Gene Set	8.837e-07	74	5.963e-05	198	positive regulation of ligase activity	amigo.geneontol...
GO GO:0030530	View Gene Set	8.906e-07	17	5.979e-05	199	heterogeneous nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0007059	View Gene Set	9.63e-07	94	6.433e-05	200	chromosome segregation	amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad chr22q13	View Gene Set	1.716e-06	179	0.0005594	1	Genes in cytogenetic band chr22q13	www.broad.mit.e...
Broad chr6p22	View Gene Set	4.161e-05	137	0.006783	2	Genes in cytogenetic band chr6p22	www.broad.mit.e...
Broad chr5q12	View Gene Set	7.022e-05	45	0.007631	3	Genes in cytogenetic band chr5q12	www.broad.mit.e...
Broad chr9q34	View Gene Set	0.0004489	204	0.03659	4	Genes in cytogenetic band chr9q34	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad PUJANA_CHEK2_PCC_NETWORK	View Gene Set	1.957e-77	744	4.68e-74	1	Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200].	www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK	View Gene Set	4.254e-76	1582	5.088e-73	2	Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues.	www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN	View Gene Set	9.343e-68	920	7.45e-65	3	Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h.	www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP	View Gene Set	6.399e-65	577	3.827e-62	4	Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1).	www.broad.mit.e...
Broad MANALO_HYPOXIA_DN	View Gene Set	7.51e-61	276	3.593e-58	5	Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091].	www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN	View Gene Set	1.413e-49	1253	5.632e-47	6	Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue.	www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN	View Gene Set	2.396e-45	832	8.186e-43	7	Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h.	www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE	View Gene Set	1.045e-42	331	3.124e-40	8	The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module.	www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	View Gene Set	1.146e-39	1180	3.045e-37	9	Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314].	www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX	View Gene Set	3.678e-36	757	8.798e-34	10	Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613].	www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK	View Gene Set	1.114e-29	410	2.421e-27	11	Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues.	www.broad.mit.e...
Broad MUELLER_PLURINET	View Gene Set	1.371e-27	294	2.733e-25	12	Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells).	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM	View Gene Set	3.015e-26	154	5.548e-24	13	Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum.	www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002	View Gene Set	1.488e-23	420	2.543e-21	14	Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets.	www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA	View Gene Set	2.242e-23	433	3.575e-21	15	Mitochondrial genes	www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	View Gene Set	9.659e-23	639	1.444e-20	16	Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts.	www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN	View Gene Set	4.394e-22	415	6.182e-20	17	Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector.	www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK	View Gene Set	1.054e-19	164	1.4e-17	18	Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues.	www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN	View Gene Set	2.405e-18	124	3.028e-16	19	Upregulated by induction of exogenous BRCA1 in EcR-293 cells	www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP	View Gene Set	3.282e-18	485	3.925e-16	20	Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector.	www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	View Gene Set	6.514e-18	436	7.42e-16	21	Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs.	www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK	View Gene Set	9.728e-18	1375	1.058e-15	22	Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues.	www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN	View Gene Set	1.061e-17	303	1.104e-15	23	Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes.	www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN	View Gene Set	1.951e-17	80	1.945e-15	24	Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP	View Gene Set	3.259e-17	711	3.118e-15	25	Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples.	www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN	View Gene Set	6.326e-17	62	5.82e-15	26	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP	View Gene Set	2.93e-16	127	2.595e-14	27	Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database.	www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK	View Gene Set	3.305e-16	92	2.823e-14	28	Genes constituting the BRCA-centered network (BCN).	www.broad.mit.e...
Broad DANG_BOUND_BY_MYC	View Gene Set	5.02e-16	1045	4.141e-14	29	Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database.	www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP	View Gene Set	2.451e-15	68	1.955e-13	30	Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609].	www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6	View Gene Set	2.837e-15	435	2.189e-13	31	Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP	View Gene Set	4.697e-15	589	3.511e-13	32	Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	View Gene Set	3.716e-14	308	2.694e-12	33	Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only.	www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP	View Gene Set	8.009e-14	537	5.635e-12	34	Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h.	www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN	View Gene Set	1.056e-13	243	7.219e-12	35	Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h.	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN	View Gene Set	6.101e-13	46	3.944e-11	36	Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone.	www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE	View Gene Set	6.055e-13	208	3.944e-11	36	Genes that comprise the mitochondria gene module	www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP	View Gene Set	7.739e-13	45	4.871e-11	38	Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone.	www.broad.mit.e...
Broad BIDUS_METASTASIS_UP	View Gene Set	1.108e-12	203	6.795e-11	39	Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases.	www.broad.mit.e...
Broad PENG_GLUTAMINE_DEPRIVATION_DN	View Gene Set	1.866e-12	84	1.116e-10	40	Genes down-regulated in BJAB cells (B-lymphoma) after glutamine [PubChem=738] deprivation.	www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN	View Gene Set	5.572e-12	96	3.174e-10	41	Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444].	www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP	View Gene Set	5.499e-12	144	3.174e-10	41	Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones.	www.broad.mit.e...
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP	View Gene Set	7.984e-12	1353	4.43e-10	43	Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors.	www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN	View Gene Set	8.149e-12	43	4.43e-10	43	Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757].	www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER	View Gene Set	1.509e-11	138	8.024e-10	45	The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome.	www.broad.mit.e...
Broad SCHLOSSER_MYC_AND_SERUM_RESPONSE_SYNERGY	View Gene Set	2.208e-11	31	1.148e-09	46	Cluster 3: genes strongly up-regulated in B493-6 cells (B lymphocytes) by a combination of MYC [Gene ID=4609] and serum but not by each of them alone.	www.broad.mit.e...
Broad BENPORATH_ES_1	View Gene Set	2.413e-11	367	1.228e-09	47	Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies.	www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN	View Gene Set	2.545e-11	241	1.242e-09	48	Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties.	www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN	View Gene Set	2.523e-11	332	1.242e-09	48	Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265].	www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP	View Gene Set	2.675e-11	213	1.28e-09	50	Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples.	www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP	View Gene Set	3.183e-11	143	1.493e-09	51	Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3.	www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP	View Gene Set	3.64e-11	152	1.674e-09	52	Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years.	www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN	View Gene Set	5.373e-11	158	2.425e-09	53	Genes down-regulated in Wilm's tumor samples compared to fetal kidney.	www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS	View Gene Set	6.171e-11	92	2.734e-09	54	Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues.	www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP	View Gene Set	6.947e-11	178	3.021e-09	55	Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi.	www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP	View Gene Set	7.438e-11	359	3.177e-09	56	The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma.	www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN	View Gene Set	1.411e-10	201	5.922e-09	57	Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1.	www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN	View Gene Set	3.478e-10	351	1.424e-08	58	Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION	View Gene Set	3.511e-10	71	1.424e-08	58	Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS	View Gene Set	5.823e-10	768	2.321e-08	60	Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set.	www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN	View Gene Set	1.257e-09	148	4.931e-08	61	Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi.	www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP	View Gene Set	1.379e-09	180	5.321e-08	62	Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14	View Gene Set	1.835e-09	131	6.966e-08	63	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	View Gene Set	2.52e-09	184	9.419e-08	64	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES	View Gene Set	2.879e-09	128	1.06e-07	65	Genes involved in DNA replication compiled manually by the authors.	www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES	View Gene Set	4.568e-09	630	1.656e-07	66	Genes showing cell-cycle stage-specific expression [PMID=12058064].	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN	View Gene Set	7.935e-09	60	2.833e-07	67	Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701].	www.broad.mit.e...
Broad RAMALHO_STEMNESS_UP	View Gene Set	9.042e-09	192	3.181e-07	68	Genes enriched in embryonic neural and hematopoietic stem cells.	www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP	View Gene Set	9.449e-09	408	3.229e-07	69	Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples.	www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN	View Gene Set	9.354e-09	42	3.229e-07	69	Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037].	www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN	View Gene Set	1.189e-08	86	4.007e-07	71	Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors.	www.broad.mit.e...
Broad MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP	View Gene Set	1.4e-08	92	4.651e-07	72	Genes correlated with the early tumor onset in the Emu-myc transgenic mouse lymphoma model.	www.broad.mit.e...
Broad PENG_RAPAMYCIN_RESPONSE_DN	View Gene Set	1.725e-08	69	5.654e-07	73	Genes down-regulated in BJUB cells (B-lymphoma) in response to rapamycin [PubChem=6610346] treatment.	www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP	View Gene Set	2.026e-08	370	6.548e-07	74	Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2	View Gene Set	2.733e-08	265	8.715e-07	75	Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP	View Gene Set	3.426e-08	317	1.078e-06	76	Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector.	www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN	View Gene Set	4.891e-08	76	1.519e-06	77	Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298].	www.broad.mit.e...
Broad MOOTHA_PGC	View Gene Set	6.234e-08	329	1.912e-06	78	Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP	View Gene Set	6.558e-08	53	1.986e-06	79	The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele.	www.broad.mit.e...
Broad BHATTACHARYA_EMBRYONIC_STEM_CELL	View Gene Set	9.128e-08	76	2.729e-06	80	The 'stemnes' signature: genes up-regulated and common to 6 human embryonic stem cell lines tested.	www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN	View Gene Set	1.206e-07	289	3.563e-06	81	Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi.	www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN	View Gene Set	2.077e-07	136	6.059e-06	82	Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions.	www.broad.mit.e...
Broad HESS_TARGETS_OF_HOXA9_AND_MEIS1_UP	View Gene Set	2.795e-07	59	8.054e-06	83	Genes up-regulated in hematopoietic precursor cells conditionally expressing HOXA9 and MEIS1 [Gene ID=3205 4211].	www.broad.mit.e...
Broad IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR	View Gene Set	3.079e-07	100	8.768e-06	84	Genes in the expression cluster 'Early Progenitors Shared': up-regulated in hematopoietic progenitors from adult bone marrow and from fetal liver.	www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP	View Gene Set	3.315e-07	93	9.33e-06	85	Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte.	www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN	View Gene Set	3.485e-07	139	9.692e-06	86	Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi.	www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN	View Gene Set	3.784e-07	61	1.04e-05	87	Genes down-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562].	www.broad.mit.e...
Broad WONG_PROTEASOME_GENE_MODULE	View Gene Set	4.26e-07	46	1.152e-05	88	Genes that comprise the proteasome gene module	www.broad.mit.e...
Broad LY_AGING_OLD_DN	View Gene Set	4.285e-07	47	1.152e-05	88	Genes up-regulated in fibroblasts from old individuals compared to those from young donors.	www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP	View Gene Set	4.854e-07	53	1.29e-05	90	Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive.	www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP	View Gene Set	4.958e-07	469	1.303e-05	91	Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN	View Gene Set	5.675e-07	51	1.475e-05	92	Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC).	www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S2	View Gene Set	6.031e-07	114	1.551e-05	93	Genes from 'subtype S2' signature of hepatocellular carcinoma (HCC): proliferation MYC and AKT1 [Gene ID=4609 207] activation.	www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN	View Gene Set	7.046e-07	859	1.793e-05	94	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES	View Gene Set	7.588e-07	205	1.91e-05	95	Genes involved in DNA repair compiled manually by the authors.	www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE	View Gene Set	8.079e-07	187	2.013e-05	96	Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP.	www.broad.mit.e...
Broad NAKAMURA_CANCER_MICROENVIRONMENT_DN	View Gene Set	8.654e-07	45	2.134e-05	97	Genes down-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro.	www.broad.mit.e...
Broad DANG_REGULATED_BY_MYC_UP	View Gene Set	9.53e-07	65	2.326e-05	98	Genes up-regulated by MYC [Gene ID=4609] according to the MYC Target Gene Database.	www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN	View Gene Set	9.875e-07	212	2.386e-05	99	Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199].	www.broad.mit.e...
Broad MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN	View Gene Set	1.508e-06	121	3.607e-05	100	Genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [Gene ID=23495].	www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN	View Gene Set	1.695e-06	49	4.013e-05	101	Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector.	www.broad.mit.e...
Broad MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN	View Gene Set	1.81e-06	42	4.244e-05	102	Genes down-regulated in normal bone marrow plasma cells (BMPC) compared to polyclonal plasmablasts (PPC) that also distinguished multiple myeloma (MM) samples by expression of levels of TACI [Gene ID=23495].	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP	View Gene Set	3.07e-06	36	7.061e-05	103	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_DN	View Gene Set	3.07e-06	36	7.061e-05	103	Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN	View Gene Set	3.15e-06	52	7.177e-05	105	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	View Gene Set	3.773e-06	681	8.473e-05	106	Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS	View Gene Set	3.79e-06	19	8.473e-05	106	RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1.	www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN	View Gene Set	4.142e-06	475	9.173e-05	108	Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17	View Gene Set	5.455e-06	165	0.0001197	109	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17.	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN	View Gene Set	6.517e-06	160	0.0001417	110	Genes down-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2 STK6 and ZNF217 [Gene ID=4605 6790 7764]	www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX	View Gene Set	7.089e-06	229	0.0001528	111	Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK	View Gene Set	7.819e-06	100	0.000167	112	Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature.	www.broad.mit.e...
Broad REN_BOUND_BY_E2F	View Gene Set	9.92e-06	47	0.00021	113	Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay.	www.broad.mit.e...
Broad MENSSEN_MYC_TARGETS	View Gene Set	1.097e-05	16	0.0002301	114	Genes up-regulated by adenoviral expression of c-MYC [Gene ID=4609] in HUVEC cells (umbilical vein endothelium).	www.broad.mit.e...
Broad XU_RESPONSE_TO_TRETINOIN_AND_NSC682994_DN	View Gene Set	1.182e-05	14	0.0002458	115	Genes down-regulated synergistically in NB4 cells (acute promyelocytic leukemia APL) by tretinoin and NSC682994 [PubChem=5538 388304].	www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP	View Gene Set	1.263e-05	52	0.0002605	116	Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage.	www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP	View Gene Set	1.31e-05	57	0.0002678	117	DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not.	www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL	View Gene Set	1.642e-05	109	0.0003329	118	Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples.	www.broad.mit.e...
Broad SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP	View Gene Set	1.753e-05	45	0.0003523	119	Top 50 up-regulated markers distinguishing diffuse large B-cell lymphoma (DLBCL) from follicular lymphoma (FL) samples.	www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_SUBGROUPS	View Gene Set	2.055e-05	28	0.0004096	120	Top genes up-regulated in MM4 vs MM1 subgroup of multiple myeloma samples.	www.broad.mit.e...
Broad BASSO_B_LYMPHOCYTE_NETWORK	View Gene Set	2.495e-05	136	0.0004892	121	Genes which comprise the top 1% of highly interconnected genes (major hubs) that account for most of gene interactions in the reconstructed regulatory networks from expression profiles in B lymphocytes.	www.broad.mit.e...
Broad GALE_APL_WITH_FLT3_MUTATED_UP	View Gene Set	2.476e-05	52	0.0004892	121	Genes up-regulated in acute promyelocytic leukemia (APL) patients with mutated FLT3 [Gene ID=2322].	www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_UP	View Gene Set	2.553e-05	64	0.0004965	123	Genes up-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi.	www.broad.mit.e...
Broad CHNG_MULTIPLE_MYELOMA_HYPERPLOID_UP	View Gene Set	3.198e-05	51	0.000612	124	Protein biosynthesis transport or catabolism genes up-regulated in hyperploid multiple myeloma (MM) compared to the non-hyperploid MM samples.	www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER	View Gene Set	3.176e-05	60	0.000612	124	Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN	View Gene Set	3.548e-05	131	0.0006737	126	Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi.	www.broad.mit.e...
Broad KIM_MYC_AMPLIFICATION_TARGETS_UP	View Gene Set	3.97e-05	155	0.0007477	127	Genes positively correlated with amplifications of MYC [Gene ID=4609] in SCLC (small cell lung cancer) cell lines.	www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP	View Gene Set	4.475e-05	129	0.0008344	128	Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi.	www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA	View Gene Set	4.5e-05	46	0.0008344	128	'Cancer prone response profile' (CPRP): genes changed in response to bisphenol A [PubChem=6623] in epithelial cell cultures from patients at high risk of breast cancer.	www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP	View Gene Set	4.656e-05	135	0.0008503	130	Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360].	www.broad.mit.e...
Broad BENPORATH_PROLIFERATION	View Gene Set	4.642e-05	140	0.0008503	130	Set 'Proliferation Cluster': genes defined in human breast tumor expression data.	www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN	View Gene Set	4.743e-05	15	0.0008596	132	Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors.	www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN	View Gene Set	4.987e-05	297	0.0008969	133	Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown.	www.broad.mit.e...
Broad KIM_GASTRIC_CANCER_CHEMOSENSITIVITY	View Gene Set	5.85e-05	97	0.001044	134	Genes up-regulated in gastric cancer patients refractory to chemotherapy treatment with 5-fluorouracil and cisplatin [PubChem=3385 2767] compared to the sensitive state.	www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN	View Gene Set	6.209e-05	22	0.001095	135	Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161].	www.broad.mit.e...
Broad MOOTHA_VOXPHOS	View Gene Set	6.224e-05	82	0.001095	135	Genes involved in oxidative phosphorylation; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets.	www.broad.mit.e...
Broad LEE_METASTASIS_AND_RNA_PROCESSING_UP	View Gene Set	6.518e-05	15	0.001138	137	Components of RNA post-transcriptional modification machinery up-regulated in MDA-MB-435 cells (breast cancer) whose metastatic potential has been reduced by expression of NME1 [Gene ID=4830].	www.broad.mit.e...
Broad GOLDRATH_HOMEOSTATIC_PROLIFERATION	View Gene Set	8.015e-05	154	0.001388	138	Up-regulated in CD8+ [Gene ID=925] T lymphocytes undergoing homeostatic proliferation (HP) versus the naive cells; these genes are not up-regulated versus effector or memory cell population.	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_11	View Gene Set	8.064e-05	93	0.001388	138	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11.	www.broad.mit.e...
Broad DAZARD_RESPONSE_TO_UV_NHEK_DN	View Gene Set	8.96e-05	256	0.001531	140	Genes down-regulated in NHEK cells (normal keratinocytes) by UV-B irradiation.	www.broad.mit.e...
Broad PENG_LEUCINE_DEPRIVATION_DN	View Gene Set	9.466e-05	50	0.001606	141	Genes down-regulated in BJAB cells (B-lymphoma) after leucine [PubChem=857] deprivation.	www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_UP	View Gene Set	0.0001052	168	0.001753	142	Genes with copy number gains in primary neuroblastoma tumors.	www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP	View Gene Set	0.0001055	388	0.001753	142	Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195].	www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE	View Gene Set	0.0001055	36	0.001753	142	Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation.	www.broad.mit.e...
Broad CHAUHAN_RESPONSE_TO_METHOXYESTRADIOL_UP	View Gene Set	0.0001157	47	0.001908	145	Genes up-regulated by 2-methoxyestradiol (2ME2) [PubChem=1573] in the MM.1S cell line (multiple myeloma) sensitive to dexamethasone [PubChem=5743].	www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE	View Gene Set	0.0001206	54	0.001977	146	Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_A_DN	View Gene Set	0.000122	17	0.001985	147	Genes down-regulated in the luminal A subtype of breast cancer.	www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN	View Gene Set	0.0001319	53	0.002131	148	Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019].	www.broad.mit.e...
Broad BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP	View Gene Set	0.0001492	190	0.002395	149	Genes up-regulated in medullary breast cancer (MBC) relative to ductal breast cancer (DBD).	www.broad.mit.e...
Broad MUNSHI_MULTIPLE_MYELOMA_DN	View Gene Set	0.0001837	9	0.002929	150	Genes down-regulated in multiple myeloma (MM) compared to normal plasma cells from the patient's identical twin.	www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G6	View Gene Set	0.0002052	122	0.003251	151	Cluster G6: genes increasingly down-regulated in NHEK cells (normal keratinocyte) after UV-B irradiation.	www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_DN	View Gene Set	0.0002333	25	0.003671	152	Genes down-regulated in EVSA-T cells (breast cancer) treated THC (delta-9-tetrahydrocannabinol) [PubChem=6610319].	www.broad.mit.e...
Broad CHANG_CYCLING_GENES	View Gene Set	0.0002349	49	0.003672	153	Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature.	www.broad.mit.e...
Broad PRAMOONJAGO_SOX4_TARGETS_DN	View Gene Set	0.0002762	51	0.00429	154	Genes down-regulated in ACC3 cells (adenoid cystic carcinoma) after knockdown of SOX4 [Gene ID=6659] by RNAi.	www.broad.mit.e...
Broad POMEROY_MEDULLOBLASTOMA_PROGNOSIS_DN	View Gene Set	0.0002794	39	0.004312	155	Top marker genes in medulloblastoma associated with poor response to treatment (poor outcome).	www.broad.mit.e...
Broad MOOTHA_GLUCONEOGENESIS	View Gene Set	0.000309	32	0.004739	156	Genes involved in gluconeogenesis; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets.	www.broad.mit.e...
Broad MOOTHA_TCA	View Gene Set	0.0003121	15	0.004754	157	Tricarboxylic acid related genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets.	www.broad.mit.e...
Broad KALMA_E2F1_TARGETS	View Gene Set	0.0003167	11	0.004795	158	DNA replication genes up-regulated in a Rat-1a cell line (fibroblast) by expression of E2F1 [Gene ID=1869].	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION_CCNE1	View Gene Set	0.0003235	38	0.004867	159	Selected gradually up-regulated genes whose expression profile follows that of CCNE1 [Gene ID=898] in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2	View Gene Set	0.0003453	111	0.005162	160	'Cancer prone response profile' (CPRP): genes common to estradiol and bisphenol A [PubChem=5757 6623] response of epithelial cell cultures from patients at high risk of breast cancer.	www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_DN	View Gene Set	0.0003626	250	0.005387	161	Genes down-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562].	www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_BRCA1_UP	View Gene Set	0.0004154	32	0.006134	162	Up-regulated genes from the optimal set of 100 markers discriminating ER(-) breast cancer tumors by BRCA1 [Gene ID=672] mutation status.	www.broad.mit.e...
Broad RAMASWAMY_METASTASIS_UP	View Gene Set	0.00042	63	0.006164	163	Up-regulated genes in metastatic vs primary solid tumors.	www.broad.mit.e...
Broad AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN	View Gene Set	0.0004653	218	0.006786	164	Down-regulated genes whose expression correlates with copy number losses in pancreatic adenocarcinoma cell lines and primary tumor specimens.	www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER	View Gene Set	0.0004975	167	0.007212	165	Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines.	www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_DN	View Gene Set	0.0005588	168	0.008052	166	Genes down-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects.	www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G5	View Gene Set	0.0006433	10	0.00916	167	Cluster G5: genes up-regulated in NHEK cells (normal keratinocyte) at 3 h and 24 h time points after UV-B irradiation.	www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN	View Gene Set	0.0006404	123	0.00916	167	Genes highly expressed in hepatocellular carcinoma with poor survival.	www.broad.mit.e...
Broad YU_MYC_TARGETS_UP	View Gene Set	0.0006511	37	0.009215	169	Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609].	www.broad.mit.e...
Broad SHEPARD_CRUSH_AND_BURN_MUTANT_UP	View Gene Set	0.0006702	135	0.00943	170	Human orthologs of genes up-regulated in the crb ('crash and burn') zebrafish mutant that represents a loss-of-function mutation in BMYB [Gene ID=4605].	www.broad.mit.e...
Broad ELVIDGE_HIF1A_AND_HIF2A_TARGETS_UP	View Gene Set	0.0006846	38	0.009533	171	Genes up-regulated in MCF7 cells (breast cancer) after knockdown of both HIF1A and HIF2A [Gene ID=3091 2034] by RNAi.	www.broad.mit.e...
Broad SAKAI_TUMOR_INFILTRATING_MONOCYTES_DN	View Gene Set	0.0006855	79	0.009533	171	Selected genes down-regulated in inflammatory monocytes infiltrating hepatocellular carcinoma (HCC).	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP	View Gene Set	0.0007084	314	0.009739	173	Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP	View Gene Set	0.0007051	283	0.009739	173	Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue.	www.broad.mit.e...
Broad SARRIO_EPITHELIAL_MESENCHYMAL_TRANSITION_UP	View Gene Set	0.0007409	16	0.01013	175	Genes up-regulated in MCF10A cells (breast cancer) grown at low (mesenchymal phenotype) compared to those grown at high (epithelial basal-like phenotype) confluency.	www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP	View Gene Set	0.0007559	290	0.01027	176	Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma.	www.broad.mit.e...
Broad BENPORATH_ES_2	View Gene Set	0.0008496	39	0.01144	177	Set 'Set 'ES exp2': genes overexpressed in human embryonic stem cells according to a meta-analysis of 8 profiling studies.	www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP	View Gene Set	0.0008512	43	0.01144	177	Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP	View Gene Set	0.001158	220	0.01548	179	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors.	www.broad.mit.e...
Broad COLLER_MYC_TARGETS_UP	View Gene Set	0.001304	12	0.01723	180	Genes regulated by forced expression of MYC [Gene ID=4609] in 293T (transformed fetal renal cell).	www.broad.mit.e...
Broad JAIN_NFKB_SIGNALING	View Gene Set	0.001301	73	0.01723	180	Genes abnormally regulated in response to CD40L and IL4 [Gene ID=959 3565] stimulation of B lymphocytes from patients with a hypomorphic mutation of IKBKG [Gene ID=8517].	www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_16Q24_AMPLICON	View Gene Set	0.001317	48	0.01731	182	Genes within amplicon 16q24 identified in a copy number alterations study of 191 breast tumor samples.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	View Gene Set	0.001347	44	0.0176	183	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G123 defined by unsupervised clustering.	www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_24HR_5_DN	View Gene Set	0.001418	47	0.01843	184	Genes down-regulated in EVSA-T cells (breast cancer) treated with 5 micromolar THC (delta-9-tetrahydrocannabinol) [PubChem=6610319] for 24 h.	www.broad.mit.e...
Broad APPIERTO_RESPONSE_TO_FENRETINIDE_DN	View Gene Set	0.001444	40	0.01867	185	Genes down-regulated in A2780 cells (ovarian carcinoma) exposed to fenretinide [PubChem=1744].	www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2	View Gene Set	0.001467	33	0.01886	186	Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples.	www.broad.mit.e...
Broad ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN	View Gene Set	0.001664	346	0.02107	187	Genes down-regulated in normal tissue adjacent to liver tumor compared to the normal liver samples.	www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_UP	View Gene Set	0.00166	452	0.02107	187	Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335].	www.broad.mit.e...
Broad CHUANG_OXIDATIVE_STRESS_RESPONSE_DN	View Gene Set	0.001663	10	0.02107	187	Genes down-regulated in MCF7 cells (breast cancer) after treatment with the oxydants: hydrogen peroxyde menadione and t-butyl hydroperoxyde [PubChem=784 4055 6410].	www.broad.mit.e...
Broad JAZAG_TGFB1_SIGNALING_DN	View Gene Set	0.001818	35	0.02289	190	Genes down-regulated in PANC-1-puro cells (pancreatic cancer) stimulated by TGF1B [Gene ID=7040] for 2 h.	www.broad.mit.e...
Broad WAKASUGI_HAVE_ZNF143_BINDING_SITES	View Gene Set	0.001828	55	0.02289	191	DNA repair genes whose promoters contain putative ZNF143 [Gene ID=7702] binding sites.	www.broad.mit.e...
Broad KRASNOSELSKAYA_ILF3_TARGETS_DN	View Gene Set	0.001883	38	0.02346	192	Down-regulated in GHOST(3)CXCR4 cells (osteosarcoma) upon ectopic expression of ILF3 [Gene ID=3609].	www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_7P15_AMPLICON	View Gene Set	0.002039	11	0.02527	193	Genes within amplicon 7p15 identified in a copy number alterations study of 191 breast tumor samples.	www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS	View Gene Set	0.002156	855	0.02659	194	Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi.	www.broad.mit.e...
Broad FUNG_IL2_SIGNALING_1	View Gene Set	0.002294	10	0.02814	195	Genes up-regulated by IL2 [Gene ID=3558] in both primary thymocytes and T1 cells (primary thymocytes immortalized by Tax an HTLV-1 encoded gene).	www.broad.mit.e...
Broad TSENG_IRS1_TARGETS_UP	View Gene Set	0.002324	102	0.02837	196	Up-regulated in brown preadipocytes with IRS1 [Gene ID=3667] knockout vs wild type controls; the knockouts have severe defects in adipocyte differentiation.	www.broad.mit.e...
Broad GLINSKY_CANCER_DEATH_UP	View Gene Set	0.002347	6	0.0285	197	Genes whose over-expression is associated with the risk of death in multiple cancer types	www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN	View Gene Set	0.002572	66	0.03107	198	Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector.	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_RED_UP	View Gene Set	0.002717	17	0.03266	199	Genes from the red module which are up-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphorylcholine (oxPAPC).	www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_14HR_UP	View Gene Set	0.002737	150	0.03274	200	Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 14 h time point that were not up-regulated at the previous time point 12 h.	www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad BIOCARTA_RANMS_PATHWAY	View Gene Set	2.096e-05	10	0.004548	1	Role of Ran in mitotic spindle regulation	www.broad.mit.e...
Broad BIOCARTA_SARS_PATHWAY	View Gene Set	0.0003479	10	0.03775	2	The SARS-coronavirus Life Cycle	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KEGG_SPLICEOSOME	View Gene Set	2.518e-21	118	4.684e-19	1	Spliceosome	www.broad.mit.e...
Broad KEGG_AMINOACYL_TRNA_BIOSYNTHESIS	View Gene Set	2.289e-14	41	2.129e-12	2	Aminoacyl-tRNA biosynthesis	www.broad.mit.e...
Broad KEGG_RNA_DEGRADATION	View Gene Set	1.108e-07	59	6.871e-06	3	RNA degradation	www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM	View Gene Set	3.783e-07	98	1.407e-05	4	Pyrimidine metabolism	www.broad.mit.e...
Broad KEGG_DNA_REPLICATION	View Gene Set	3.255e-07	36	1.407e-05	4	DNA replication	www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR	View Gene Set	8.565e-07	35	2.655e-05	6	Base excision repair	www.broad.mit.e...
Broad KEGG_PROTEASOME	View Gene Set	6.202e-06	48	0.0001648	7	Proteasome	www.broad.mit.e...
Broad KEGG_CELL_CYCLE	View Gene Set	7.986e-06	128	0.0001857	8	Cell cycle	www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS	View Gene Set	2.335e-05	11	0.0004826	9	Valine leucine and isoleucine biosynthesis	www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR	View Gene Set	4.722e-05	23	0.0008783	10	Mismatch repair	www.broad.mit.e...
Broad KEGG_LYSINE_DEGRADATION	View Gene Set	9.831e-05	44	0.001662	11	Lysine degradation	www.broad.mit.e...
Broad KEGG_CITRATE_CYCLE_TCA_CYCLE	View Gene Set	0.000117	32	0.001814	12	Citrate cycle (TCA cycle)	www.broad.mit.e...
Broad KEGG_RNA_POLYMERASE	View Gene Set	0.0001509	29	0.002159	13	RNA polymerase	www.broad.mit.e...
Broad KEGG_ONE_CARBON_POOL_BY_FOLATE	View Gene Set	0.0003094	17	0.00411	14	One carbon pool by folate	www.broad.mit.e...
Broad KEGG_GLYCOLYSIS_GLUCONEOGENESIS	View Gene Set	0.0003559	62	0.004413	15	Glycolysis / Gluconeogenesis	www.broad.mit.e...
Broad KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS	View Gene Set	0.000802	140	0.009323	16	Systemic lupus erythematosus	www.broad.mit.e...
Broad KEGG_CYSTEINE_AND_METHIONINE_METABOLISM	View Gene Set	0.000997	34	0.01091	17	Cysteine and methionine metabolism	www.broad.mit.e...
Broad KEGG_PYRUVATE_METABOLISM	View Gene Set	0.001065	40	0.011	18	Pyruvate metabolism	www.broad.mit.e...
Broad KEGG_PARKINSONS_DISEASE	View Gene Set	0.001598	133	0.01565	19	Parkinson's disease	www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.001732	44	0.01611	20	Nucleotide excision repair	www.broad.mit.e...
Broad KEGG_HUNTINGTONS_DISEASE	View Gene Set	0.002843	185	0.02518	21	Huntington's disease	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad REACTOME_GENE_EXPRESSION	View Gene Set	5.422e-33	415	2.331e-30	1	Genes involved in Gene Expression	www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	View Gene Set	9.096e-31	128	1.956e-28	2	Genes involved in Processing of Capped Intron-Containing Pre-mRNA	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING	View Gene Set	6.832e-23	97	9.793e-21	3	Genes involved in mRNA Splicing	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA	View Gene Set	7.371e-21	95	7.924e-19	4	Genes involved in Metabolism of RNA	www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS	View Gene Set	2.96e-20	124	2.546e-18	5	Genes involved in Elongation and Processing of Capped Transcripts	www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT	View Gene Set	2.338e-19	142	1.676e-17	6	Genes involved in Formation and Maturation of mRNA Transcript	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION	View Gene Set	1.252e-16	188	7.688e-15	7	Genes involved in Transcription	www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY	View Gene Set	3.812e-16	50	2.049e-14	8	Genes involved in snRNP Assembly	www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES	View Gene Set	5.888e-16	157	2.813e-14	9	Genes involved in Mitotic M-M/G1 phases	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC	View Gene Set	1.865e-15	306	8.019e-14	10	Genes involved in Cell Cycle Mitotic	www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION	View Gene Set	4.928e-14	40	1.926e-12	11	Genes involved in tRNA Aminoacylation	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT	View Gene Set	3.948e-13	42	1.415e-11	12	Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript	www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE	View Gene Set	2.665e-12	77	8.816e-11	13	Genes involved in Telomere Maintenance	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION	View Gene Set	2.636e-11	120	8.096e-10	14	Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS	View Gene Set	3.426e-11	110	9.822e-10	15	Genes involved in Cell Cycle Checkpoints	www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA	View Gene Set	5.244e-11	31	1.409e-09	16	Genes involved in Rev-mediated nuclear export of HIV-1 RNA	www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN	View Gene Set	1.67e-10	30	4.224e-09	17	Genes involved in Nuclear import of Rev protein	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA	View Gene Set	2.472e-10	32	5.906e-09	18	Genes involved in Transport of the SLBP independent Mature mRNA	www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY	View Gene Set	4.821e-10	29	1.091e-08	19	Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery	www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA	View Gene Set	7.489e-10	89	1.61e-08	20	Genes involved in Synthesis of DNA	www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE	View Gene Set	2.063e-09	92	4.224e-08	21	Genes involved in Mitotic Prometaphase	www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE	View Gene Set	2.554e-09	103	4.991e-08	22	Genes involved in HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS	View Gene Set	2.694e-09	31	5.036e-08	23	Genes involved in Vpr-mediated nuclear import of PICs	www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION	View Gene Set	3.913e-09	76	7.01e-08	24	Genes involved in DNA Replication Pre-Initiation	www.broad.mit.e...
Broad REACTOME_HIV_INFECTION	View Gene Set	4.084e-09	183	7.024e-08	25	Genes involved in HIV Infection	www.broad.mit.e...
Broad REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION	View Gene Set	5.435e-09	23	8.989e-08	26	Genes involved in Cytosolic tRNA aminoacylation	www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE	View Gene Set	8.754e-09	90	1.394e-07	27	Genes involved in Late Phase of HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS	View Gene Set	1.426e-08	29	2.19e-07	28	Genes involved in Transport of Ribonucleoproteins into the Host Nucleus	www.broad.mit.e...
Broad REACTOME_S_PHASE	View Gene Set	2.192e-08	103	3.25e-07	29	Genes involved in S Phase	www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION	View Gene Set	3.294e-08	61	4.682e-07	30	Genes involved in M/G1 Transition	www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS	View Gene Set	3.375e-08	49	4.682e-07	30	Genes involved in Packaging Of Telomere Ends	www.broad.mit.e...
Broad REACTOME_GLUCOSE_REGULATION_OF_INSULIN_SECRETION	View Gene Set	3.92e-08	161	5.267e-07	32	Genes involved in Glucose Regulation of Insulin Secretion	www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING	View Gene Set	4.267e-08	25	5.56e-07	33	Genes involved in mRNA 3-end processing	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN	View Gene Set	4.42e-08	29	5.59e-07	34	Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein	www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE	View Gene Set	4.591e-08	36	5.641e-07	35	Genes involved in Pyruvate metabolism and TCA cycle	www.broad.mit.e...
Broad REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION	View Gene Set	5.215e-08	20	6.229e-07	36	Genes involved in Mitochondrial tRNA aminoacylation	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING	View Gene Set	9.903e-08	59	1.151e-06	37	Genes involved in RNA Polymerase I Promoter Opening	www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS	View Gene Set	1.552e-07	120	1.756e-06	38	Genes involved in Host Interactions of HIV factors	www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC	View Gene Set	1.698e-07	57	1.872e-06	39	Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C	www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A	View Gene Set	2.295e-07	63	2.467e-06	40	Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_AMINO_ACIDS	View Gene Set	2.575e-07	162	2.664e-06	41	Genes involved in Metabolism of amino acids	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE	View Gene Set	2.602e-07	82	2.664e-06	41	Genes involved in RNA PolymerasePromoter Clearance	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA	View Gene Set	2.834e-07	45	2.834e-06	43	Genes involved in Metabolism of mRNA	www.broad.mit.e...
Broad REACTOME_GLUCOSE_TRANSPORT	View Gene Set	3.415e-07	38	3.337e-06	44	Genes involved in Glucose transport	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY	View Gene Set	5.314e-07	38	4.967e-06	45	Genes involved in mRNA Splicing - Minor Pathway	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE	View Gene Set	5.295e-07	71	4.967e-06	45	Genes involved in Regulation of APC/C activators between G1/S and early anaphase	www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN	View Gene Set	6.211e-07	63	5.683e-06	47	Genes involved in Orc1 removal from chromatin	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES	View Gene Set	6.786e-07	119	6.08e-06	48	Genes involved in Metabolism of carbohydrates	www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS	View Gene Set	7.784e-07	43	6.831e-06	49	Genes involved in G2/M Checkpoints	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION	View Gene Set	8.417e-07	83	7.239e-06	50	Genes involved in RNA Polymerase II Transcription	www.broad.mit.e...
Broad REACTOME_DNA_REPAIR	View Gene Set	1.035e-06	102	8.73e-06	51	Genes involved in DNA Repair	www.broad.mit.e...
Broad REACTOME_TRANSLATION	View Gene Set	1.266e-06	120	1.047e-05	52	Genes involved in Translation	www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION	View Gene Set	1.382e-06	102	1.121e-05	53	Genes involved in G1/S Transition	www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE	View Gene Set	2.405e-06	137	1.915e-05	54	Genes involved in Influenza Life Cycle	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS	View Gene Set	5.161e-06	37	3.969e-05	55	Genes involved in Activation of ATR in response to replication stress	www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1	View Gene Set	5.169e-06	48	3.969e-05	55	Genes involved in SCF-beta-TrCP mediated degradation of Emi1	www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE	View Gene Set	5.339e-06	43	4.028e-05	57	Genes involved in p53-Independent DNA Damage Response	www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX	View Gene Set	5.797e-06	52	4.297e-05	58	Genes involved in CDT1 association with the CDC6:ORC:origin complex	www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION	View Gene Set	7.998e-06	31	5.829e-05	59	Genes involved in DNA strand elongation	www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES	View Gene Set	9.066e-06	28	6.483e-05	60	Genes involved in Extension of Telomeres	www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53	View Gene Set	9.197e-06	46	6.483e-05	60	Genes involved in Stabilization of p53	www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G	View Gene Set	1.398e-05	47	9.699e-05	62	Genes involved in Vif-mediated degradation of APOBEC3G	www.broad.mit.e...
Broad REACTOME_MICRORNA_BIOGENESIS	View Gene Set	2.065e-05	18	0.0001409	63	Genes involved in MicroRNA biogenesis	www.broad.mit.e...
Broad REACTOME_TRANSLATION_INITIATION_COMPLEX_FORMATION	View Gene Set	2.132e-05	56	0.0001432	64	Genes involved in Translation initiation complex formation	www.broad.mit.e...
Broad REACTOME_INTEGRATION_OF_ENERGY_METABOLISM	View Gene Set	2.671e-05	229	0.0001767	65	Genes involved in Integration of energy metabolism	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE	View Gene Set	2.971e-05	47	0.0001936	66	Genes involved in Regulation of ornithine decarboxylase (ODC)	www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM	View Gene Set	5.07e-05	18	0.0003254	67	Genes involved in Pyruvate metabolism	www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT	View Gene Set	6.039e-05	58	0.0003819	68	Genes involved in Signaling by Wnt	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX	View Gene Set	6.274e-05	30	0.0003854	69	Genes involved in Activation of the pre-replicative complex	www.broad.mit.e...
Broad REACTOME_CITRIC_ACID_CYCLE	View Gene Set	6.214e-05	19	0.0003854	69	Genes involved in Citric acid cycle (TCA cycle)	www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	8.018e-05	49	0.0004856	71	Genes involved in Nucleotide Excision Repair	www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR	View Gene Set	0.0001168	15	0.0006974	72	Genes involved in Homologous Recombination Repair	www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS	View Gene Set	0.0001184	11	0.0006974	72	Genes involved in Purine ribonucleoside monophosphate biosynthesis	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION_FROM_TYPE_2_PROMOTER	View Gene Set	0.0001201	20	0.0006979	74	Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter	www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA	View Gene Set	0.0001668	11	0.0009565	75	Genes involved in Unwinding of DNA	www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR	View Gene Set	0.0001692	21	0.0009573	76	Genes involved in Double-Strand Break Repair	www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21	View Gene Set	0.0001771	52	0.000989	77	Genes involved in SCF(Skp2)-mediated degradation of p2721	www.broad.mit.e...
Broad REACTOME_ELECTRON_TRANSPORT_CHAIN	View Gene Set	0.0002035	75	0.001122	78	Genes involved in Electron Transport Chain	www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT	View Gene Set	0.0002254	106	0.001227	79	Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit	www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES	View Gene Set	0.0002959	71	0.001591	80	Genes involved in Metablism of nucleotides	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_INSULIN_SECRETION	View Gene Set	0.0004717	212	0.002504	81	Genes involved in Regulation of Insulin Secretion	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_PROTEINS	View Gene Set	0.0005243	215	0.002749	82	Genes involved in Metabolism of proteins	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_TERMINATION	View Gene Set	0.0006131	17	0.003176	83	Genes involved in RNA Polymerase III Transcription Termination	www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA	View Gene Set	0.0007424	21	0.0038	84	Genes involved in Deadenylation of mRNA	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION	View Gene Set	0.0009869	34	0.004992	85	Genes involved in RNA Polymerase III Transcription	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER	View Gene Set	0.001146	44	0.005732	86	Genes involved in Transcription-coupled NER (TC-NER)	www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_3_TO_5_EXORIBONUCLEASE	View Gene Set	0.001231	11	0.006082	87	Genes involved in mRNA Decay by 3' to 5' Exoribonuclease	www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX	View Gene Set	0.001386	49	0.006748	88	Genes involved in Formation of the ternary complex and subsequently the 43S complex	www.broad.mit.e...
Broad REACTOME_GLUCONEOGENESIS	View Gene Set	0.001397	31	0.006748	88	Genes involved in Gluconeogenesis	www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_TRIC_CCT_WITH_TARGET_PROTEINS_DURING_BIOSYNTHESIS	View Gene Set	0.001536	29	0.007338	90	Genes involved in Association of TriC/CCT with target proteins during biosynthesis	www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_	View Gene Set	0.001951	58	0.009217	91	Genes involved in Cyclin E associated events during G1/S transition	www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE	View Gene Set	0.002394	15	0.01119	92	Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase	www.broad.mit.e...
Broad REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT	View Gene Set	0.002489	23	0.01151	93	Genes involved in Abortive elongation of HIV-1 transcript in the absence of Tat	www.broad.mit.e...
Broad REACTOME_INACTIVATION_OF_APC_VIA_DIRECT_INHIBITION_OF_THE_APCOMPLEX	View Gene Set	0.002902	18	0.01327	94	Genes involved in Inactivation of APC/C via direct inhibition of the APC/C complex	www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER	View Gene Set	0.00295	33	0.01335	95	Genes involved in Global Genomic NER (GG-NER)	www.broad.mit.e...
Broad REACTOME_CONVERSION_FROM_APC_CDC20_TO_APC_CDH1_IN_LATE_ANAPHASE	View Gene Set	0.003045	17	0.01364	96	Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase	www.broad.mit.e...
Broad REACTOME_MTORC1_MEDIATED_SIGNALLING	View Gene Set	0.003341	11	0.01481	97	Genes involved in mTORC1-mediated signalling	www.broad.mit.e...
Broad REACTOME_BASE_EXCISION_REPAIR	View Gene Set	0.003741	18	0.01625	98	Genes involved in Base Excision Repair	www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM	View Gene Set	0.003724	22	0.01625	98	Genes involved in Pyrimidine metabolism	www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS	View Gene Set	0.0038	20	0.01634	100	Genes involved in Lagging Strand Synthesis	www.broad.mit.e...
Broad REACTOME_VITAMIN_B5_(PANTOTHENATE)_METABOLISM	View Gene Set	0.003885	11	0.01654	101	Genes involved in Vitamin B5 (pantothenate) metabolism	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_CHAIN_ELONGATION	View Gene Set	0.004523	12	0.01907	102	Genes involved in RNA Polymerase III Chain Elongation	www.broad.mit.e...
Broad REACTOME_FORMATION_OF_ATP_BY_CHEMIOSMOTIC_COUPLING	View Gene Set	0.004818	15	0.02012	103	Genes involved in Formation of ATP by chemiosmotic coupling	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_III_TRANSCRIPTION_INITIATION	View Gene Set	0.005494	29	0.02272	104	Genes involved in RNA Polymerase III Transcription Initiation	www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_DNA_PATCH_CONTAINING_ABASIC_RESIDUE	View Gene Set	0.005804	15	0.02377	105	Genes involved in Removal of DNA patch containing abasic residue	www.broad.mit.e...
Broad REACTOME_REGULATION_OF_PYRUVATE_DEHYDROGENASE_COMPLEX	View Gene Set	0.006264	12	0.02541	106	Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex	www.broad.mit.e...
Broad REACTOME_APCDC20_MEDIATED_DEGRADATION_OF_CYCLIN_B	View Gene Set	0.00654	18	0.02604	107	Genes involved in APC/C:Cdc20 mediated degradation of Cyclin B	www.broad.mit.e...
Broad REACTOME_PHOSPHORYLATION_OF_THE_APC	View Gene Set	0.006495	17	0.02604	107	Genes involved in Phosphorylation of the APC/C	www.broad.mit.e...
Broad REACTOME_MRNA_DECAY_BY_5_TO_3_EXORIBONUCLEASE	View Gene Set	0.006894	13	0.0272	109	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_OF_THE_HIV_GENOME	View Gene Set	0.01062	59	0.0415	110	Genes involved in Transcription of the HIV genome	www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS	View Gene Set	0.01198	95	0.04599	111	Genes involved in Formation of a pool of free 40S subunits	www.broad.mit.e...
Broad REACTOME_TAT_MEDIATED_HIV1_ELONGATION_ARREST_AND_RECOVERY	View Gene Set	0.01195	30	0.04599	111	Genes involved in Tat-mediated HIV-1 elongation arrest and recovery	www.broad.mit.e...
Broad REACTOME_GLUCOSE_METABOLISM	View Gene Set	0.01307	56	0.04973	113	Genes involved in Glucose metabolism	www.broad.mit.e...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad GCCATNTTG_V$YY1_Q6	View Gene Set	3.594e-13	289	2.21e-10	1	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad CACGTG_V$MYC_Q2	View Gene Set	8.583e-12	734	2.639e-09	2	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad V$E2F_Q4_01	View Gene Set	8.568e-10	171	1.756e-07	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q3	View Gene Set	3.93e-09	162	6.043e-07	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01	View Gene Set	1.308e-08	122	1.608e-06	5	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$MYCMAX_01	View Gene Set	1.976e-08	189	2.025e-06	6	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$E2F1_Q6_01	View Gene Set	4.916e-08	177	4.319e-06	7	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F1_Q4_01	View Gene Set	9.517e-08	167	7.317e-06	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q4	View Gene Set	1.264e-07	166	8.638e-06	9	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MAX_01	View Gene Set	1.913e-07	194	9.804e-06	10	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X	www.broad.mit.e...
Broad V$E2F_Q6	View Gene Set	1.82e-07	165	9.804e-06	10	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q3	View Gene Set	1.811e-07	176	9.804e-06	10	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F_03	View Gene Set	2.57e-07	171	1.216e-05	13	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad KRCTCNNNNMANAGC_UNKNOWN	View Gene Set	5.358e-07	60	2.354e-05	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KRCTCNNNNMANAGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1DP1RB_01	View Gene Set	6.003e-07	168	2.461e-05	15	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F_Q6_01	View Gene Set	8.767e-07	167	3.37e-05	16	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q3_01	View Gene Set	1.057e-06	171	3.824e-05	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1_Q6	View Gene Set	1.942e-06	167	6.634e-05	18	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F_02	View Gene Set	3.455e-06	169	0.0001118	19	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad RRCCGTTA_UNKNOWN	View Gene Set	3.668e-06	53	0.0001128	20	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RRCCGTTA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$YY1_Q6	View Gene Set	4.033e-06	166	0.0001181	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02	View Gene Set	4.99e-06	784	0.0001395	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family	www.broad.mit.e...
Broad GCGSCMNTTT_UNKNOWN	View Gene Set	6.732e-06	49	0.00018	23	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGSCMNTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F4DP1_01	View Gene Set	8.388e-06	174	0.0002149	24	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP1_01	View Gene Set	1.065e-05	169	0.0002427	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP2_01	View Gene Set	1.065e-05	169	0.0002427	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F4DP2_01	View Gene Set	1.065e-05	169	0.0002427	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad ACAWNRNSRCGG_UNKNOWN	View Gene Set	1.484e-05	50	0.0003148	28	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWNRNSRCGG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$NFMUE1_Q6	View Gene Set	1.464e-05	175	0.0003148	28	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$NMYC_01	View Gene Set	1.82e-05	201	0.0003731	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCCACGTGNNN which matches annotation for MYCN: v-myc myelocytomatosis viral related oncogene neuroblastoma derived (avian)	www.broad.mit.e...
Broad V$USF_01	View Gene Set	5.013e-05	186	0.0009945	31	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GKCGCNNNNNNNTGAYG_UNKNOWN	View Gene Set	7.544e-05	41	0.00145	32	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GKCGCNNNNNNNTGAYG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYCMAX_03	View Gene Set	0.0001008	187	0.001879	33	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNNNCACGTGNNNNNNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad KCCGNSWTTT_UNKNOWN	View Gene Set	0.0001411	76	0.002552	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KCCGNSWTTT. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$ARNT_01	View Gene Set	0.000189	196	0.003321	35	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator	www.broad.mit.e...
Broad V$E2F1_Q4	View Gene Set	0.0002413	178	0.00401	36	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad GGCNKCCATNK_UNKNOWN	View Gene Set	0.0002409	84	0.00401	36	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNKCCATNK. Motif does not match any known transcription factor	www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6	View Gene Set	0.0002523	580	0.004084	38	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1	www.broad.mit.e...
Broad TAANNYSGCG_UNKNOWN	View Gene Set	0.0006051	60	0.009543	39	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TAANNYSGCG. Motif does not match any known transcription factor	www.broad.mit.e...
Broad KTGGYRSGAA_UNKNOWN	View Gene Set	0.0006314	53	0.009708	40	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KTGGYRSGAA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$USF_C	View Gene Set	0.0006672	211	0.01001	41	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NCACGTGN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad TMTCGCGANR_UNKNOWN	View Gene Set	0.001319	100	0.01932	42	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TMTCGCGANR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q3_01	View Gene Set	0.0015	188	0.02145	43	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGGCGCGRAANNGNM which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$ELK1_02	View Gene Set	0.002156	170	0.03013	44	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNCCGGAARTNN which matches annotation for ELK1: ELK1 member of ETS oncogene family	www.broad.mit.e...
Broad AACYNNNNTTCCS_UNKNOWN	View Gene Set	0.002457	65	0.03345	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AACYNNNNTTCCS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYCMAX_B	View Gene Set	0.002502	193	0.03345	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$E2F_01	View Gene Set	0.002602	55	0.03405	47	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TWSGCGCGAAAAYKR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$GATA1_01	View Gene Set	0.003241	178	0.04152	48	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SNNGATNNNN which matches annotation for GATA1: GATA binding protein 1 (globin transcription factor 1)	www.broad.mit.e...
Broad V$YY1_02	View Gene Set	0.003827	168	0.04803	49	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNCGGCCATCTTGNCTSNW which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad MORF_BUB3	View Gene Set	4.513e-41	256	1.927e-38	1	Neighborhood of BUB3	www.broad.mit.e...
Broad MORF_EIF3S2	View Gene Set	1.624e-39	220	3.467e-37	2	Neighborhood of EIF3S2	www.broad.mit.e...
Broad MORF_RAD23A	View Gene Set	4.207e-35	316	5.988e-33	3	Neighborhood of RAD23A	www.broad.mit.e...
Broad MORF_HDAC2	View Gene Set	1.755e-34	256	1.873e-32	4	Neighborhood of HDAC2	www.broad.mit.e...
Broad MORF_FBL	View Gene Set	2.293e-33	121	1.958e-31	5	Neighborhood of FBL	www.broad.mit.e...
Broad MORF_PRKDC	View Gene Set	7.004e-29	173	4.985e-27	6	Neighborhood of PRKDC	www.broad.mit.e...
Broad MORF_AATF	View Gene Set	1.025e-27	179	6.251e-26	7	Neighborhood of AATF	www.broad.mit.e...
Broad MORF_RFC4	View Gene Set	2.826e-26	137	1.508e-24	8	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_DEK	View Gene Set	4.964e-26	229	2.355e-24	9	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_PPP1CC	View Gene Set	5.973e-24	150	2.55e-22	10	Neighborhood of PPP1CC	www.broad.mit.e...
Broad GNF2_PA2G4	View Gene Set	4.098e-23	73	1.591e-21	11	Neighborhood of PA2G4	www.broad.mit.e...
Broad MORF_UBE2I	View Gene Set	5.128e-23	208	1.825e-21	12	Neighborhood of UBE2I	www.broad.mit.e...
Broad MORF_CSNK2B	View Gene Set	1.134e-22	256	3.726e-21	13	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_HAT1	View Gene Set	3.776e-22	155	1.152e-20	14	Neighborhood of HAT1	www.broad.mit.e...
Broad MORF_SOD1	View Gene Set	2.343e-21	247	6.67e-20	15	Neighborhood of SOD1	www.broad.mit.e...
Broad MORF_RAN	View Gene Set	5.789e-21	242	1.545e-19	16	Neighborhood of RAN	www.broad.mit.e...
Broad GNF2_RRM1	View Gene Set	6.21e-21	82	1.56e-19	17	Neighborhood of RRM1	www.broad.mit.e...
Broad MORF_ANP32B	View Gene Set	9.197e-21	174	2.182e-19	18	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_DNMT1	View Gene Set	1.547e-20	105	3.477e-19	19	Neighborhood of DNMT1	www.broad.mit.e...
Broad MORF_G22P1	View Gene Set	1.702e-20	145	3.633e-19	20	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_XRCC5	View Gene Set	2.002e-20	210	4.071e-19	21	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_ACP1	View Gene Set	3.616e-20	178	7.018e-19	22	Neighborhood of ACP1	www.broad.mit.e...
Broad GNF2_RAN	View Gene Set	4.305e-20	78	7.992e-19	23	Neighborhood of RAN	www.broad.mit.e...
Broad GNF2_SMC4L1	View Gene Set	1.671e-18	75	2.972e-17	24	Neighborhood of SMC4L1	www.broad.mit.e...
Broad GNF2_APEX1	View Gene Set	1.859e-18	72	3.175e-17	25	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_PCNA	View Gene Set	2.009e-18	71	3.3e-17	26	Neighborhood of PCNA	www.broad.mit.e...
Broad MORF_RAD54L	View Gene Set	4.081e-18	94	6.454e-17	27	Neighborhood of RAD54L	www.broad.mit.e...
Broad GNF2_RFC4	View Gene Set	4.482e-18	57	6.835e-17	28	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_RRM1	View Gene Set	6.236e-18	90	9.182e-17	29	Neighborhood of RRM1	www.broad.mit.e...
Broad MORF_GNB1	View Gene Set	1.317e-16	276	1.874e-15	30	Neighborhood of GNB1	www.broad.mit.e...
Broad GNF2_NPM1	View Gene Set	2.713e-16	57	3.737e-15	31	Neighborhood of NPM1	www.broad.mit.e...
Broad GNF2_FBL	View Gene Set	8.796e-16	119	1.174e-14	32	Neighborhood of FBL	www.broad.mit.e...
Broad GNF2_MCM4	View Gene Set	1.03e-15	50	1.333e-14	33	Neighborhood of MCM4	www.broad.mit.e...
Broad MORF_DEAF1	View Gene Set	1.455e-15	54	1.827e-14	34	Neighborhood of DEAF1	www.broad.mit.e...
Broad GNF2_DEK	View Gene Set	1.893e-15	45	2.309e-14	35	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_HDAC1	View Gene Set	2.488e-15	222	2.95e-14	36	Neighborhood of HDAC1	www.broad.mit.e...
Broad GNF2_PCNA	View Gene Set	2.98e-15	62	3.439e-14	37	Neighborhood of PCNA	www.broad.mit.e...
Broad GCM_APEX1	View Gene Set	4.871e-15	102	5.473e-14	38	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_UNG	View Gene Set	1.623e-14	65	1.776e-13	39	Neighborhood of UNG	www.broad.mit.e...
Broad GNF2_NS	View Gene Set	1.929e-14	35	2.06e-13	40	Neighborhood of NS	www.broad.mit.e...
Broad GNF2_MCM5	View Gene Set	3.405e-14	51	3.546e-13	41	Neighborhood of MCM5	www.broad.mit.e...
Broad GNF2_BUB1B	View Gene Set	6.52e-14	46	6.629e-13	42	Neighborhood of BUB1B	www.broad.mit.e...
Broad GNF2_KPNB1	View Gene Set	7.922e-14	52	7.867e-13	43	Neighborhood of KPNB1	www.broad.mit.e...
Broad GNF2_CENPF	View Gene Set	8.937e-14	56	8.673e-13	44	Neighborhood of CENPF	www.broad.mit.e...
Broad GNF2_CCNA2	View Gene Set	1.093e-13	62	1.037e-12	45	Neighborhood of CCNA2	www.broad.mit.e...
Broad MORF_MSH2	View Gene Set	1.143e-13	52	1.038e-12	46	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_DAP3	View Gene Set	1.128e-13	175	1.038e-12	46	Neighborhood of DAP3	www.broad.mit.e...
Broad GNF2_MLH1	View Gene Set	3.179e-13	36	2.828e-12	48	Neighborhood of MLH1	www.broad.mit.e...
Broad MORF_UBE2N	View Gene Set	6.351e-13	79	5.534e-12	49	Neighborhood of UBE2N	www.broad.mit.e...
Broad GNF2_RBBP6	View Gene Set	6.74e-13	54	5.756e-12	50	Neighborhood of RBBP6	www.broad.mit.e...
Broad MORF_EIF4E	View Gene Set	1.919e-12	76	1.607e-11	51	Neighborhood of EIF4E	www.broad.mit.e...
Broad GNF2_HAT1	View Gene Set	2.867e-12	45	2.342e-11	52	Neighborhood of HAT1	www.broad.mit.e...
Broad GNF2_MSH6	View Gene Set	2.907e-12	30	2.342e-11	52	Neighborhood of MSH6	www.broad.mit.e...
Broad GNF2_HDAC1	View Gene Set	3.096e-12	85	2.448e-11	54	Neighborhood of HDAC1	www.broad.mit.e...
Broad GNF2_RRM2	View Gene Set	3.386e-12	36	2.628e-11	55	Neighborhood of RRM2	www.broad.mit.e...
Broad MORF_SMC1L1	View Gene Set	3.733e-12	47	2.797e-11	56	Neighborhood of SMC1L1	www.broad.mit.e...
Broad GNF2_DENR	View Gene Set	3.73e-12	39	2.797e-11	56	Neighborhood of DENR	www.broad.mit.e...
Broad MORF_FEN1	View Gene Set	4.062e-12	58	2.991e-11	58	Neighborhood of FEN1	www.broad.mit.e...
Broad MORF_ESPL1	View Gene Set	5.111e-12	58	3.699e-11	59	Neighborhood of ESPL1	www.broad.mit.e...
Broad MORF_CDC16	View Gene Set	5.552e-12	67	3.951e-11	60	Neighborhood of CDC16	www.broad.mit.e...
Broad MORF_ERH	View Gene Set	5.969e-12	103	4.178e-11	61	Neighborhood of ERH	www.broad.mit.e...
Broad MORF_RAD21	View Gene Set	6.556e-12	157	4.515e-11	62	Neighborhood of RAD21	www.broad.mit.e...
Broad MORF_PPP2CA	View Gene Set	1.883e-11	110	1.276e-10	63	Neighborhood of PPP2CA	www.broad.mit.e...
Broad GNF2_HMMR	View Gene Set	2.046e-11	43	1.365e-10	64	Neighborhood of HMMR	www.broad.mit.e...
Broad MORF_PTPN11	View Gene Set	2.117e-11	93	1.377e-10	65	Neighborhood of PTPN11	www.broad.mit.e...
Broad GNF2_MSH2	View Gene Set	2.128e-11	26	1.377e-10	65	Neighborhood of MSH2	www.broad.mit.e...
Broad GNF2_CDC20	View Gene Set	2.773e-11	52	1.767e-10	67	Neighborhood of CDC20	www.broad.mit.e...
Broad MORF_GMPS	View Gene Set	2.959e-11	48	1.825e-10	68	Neighborhood of GMPS	www.broad.mit.e...
Broad GCM_ACTG1	View Gene Set	3.035e-11	113	1.825e-10	68	Neighborhood of ACTG1	www.broad.mit.e...
Broad GNF2_CCNB2	View Gene Set	3.015e-11	53	1.825e-10	68	Neighborhood of CCNB2	www.broad.mit.e...
Broad GNF2_CKS1B	View Gene Set	2.973e-11	36	1.825e-10	68	Neighborhood of CKS1B	www.broad.mit.e...
Broad MORF_MAP2K2	View Gene Set	3.183e-11	123	1.888e-10	72	Neighborhood of MAP2K2	www.broad.mit.e...
Broad MORF_BUB1B	View Gene Set	3.264e-11	61	1.909e-10	73	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_EI24	View Gene Set	3.411e-11	136	1.968e-10	74	Neighborhood of EI24	www.broad.mit.e...
Broad GNF2_RFC3	View Gene Set	4.16e-11	38	2.368e-10	75	Neighborhood of RFC3	www.broad.mit.e...
Broad GNF2_CDC2	View Gene Set	4.772e-11	56	2.681e-10	76	Neighborhood of CDC2	www.broad.mit.e...
Broad GNF2_ESPL1	View Gene Set	5.204e-11	35	2.886e-10	77	Neighborhood of ESPL1	www.broad.mit.e...
Broad GNF2_FEN1	View Gene Set	9.29e-11	49	5.086e-10	78	Neighborhood of FEN1	www.broad.mit.e...
Broad MORF_CUL1	View Gene Set	1.006e-10	62	5.437e-10	79	Neighborhood of CUL1	www.broad.mit.e...
Broad GCM_PPP1CC	View Gene Set	1.452e-10	47	7.752e-10	80	Neighborhood of PPP1CC	www.broad.mit.e...
Broad GNF2_G22P1	View Gene Set	1.937e-10	29	1.021e-09	81	Neighborhood of G22P1	www.broad.mit.e...
Broad GCM_CBFB	View Gene Set	4.805e-10	59	2.502e-09	82	Neighborhood of CBFB	www.broad.mit.e...
Broad GNF2_XRCC5	View Gene Set	4.937e-10	61	2.54e-09	83	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_SART1	View Gene Set	6.125e-10	55	3.114e-09	84	Neighborhood of SART1	www.broad.mit.e...
Broad MORF_EIF3S6	View Gene Set	6.733e-10	108	3.383e-09	85	Neighborhood of EIF3S6	www.broad.mit.e...
Broad MORF_RPA1	View Gene Set	8.905e-10	55	4.421e-09	86	Neighborhood of RPA1	www.broad.mit.e...
Broad MORF_DDB1	View Gene Set	1.252e-09	220	6.144e-09	87	Neighborhood of DDB1	www.broad.mit.e...
Broad GNF2_TDG	View Gene Set	1.518e-09	23	7.365e-09	88	Neighborhood of TDG	www.broad.mit.e...
Broad MORF_RPA2	View Gene Set	1.62e-09	170	7.771e-09	89	Neighborhood of RPA2	www.broad.mit.e...
Broad GCM_NPM1	View Gene Set	3.193e-09	108	1.515e-08	90	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_PHB	View Gene Set	3.421e-09	112	1.605e-08	91	Neighborhood of PHB	www.broad.mit.e...
Broad GNF2_CENPE	View Gene Set	3.532e-09	37	1.639e-08	92	Neighborhood of CENPE	www.broad.mit.e...
Broad MORF_BUB1	View Gene Set	4.243e-09	49	1.948e-08	93	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_CTBP1	View Gene Set	6.429e-09	149	2.92e-08	94	Neighborhood of CTBP1	www.broad.mit.e...
Broad MORF_TERF1	View Gene Set	6.566e-09	57	2.951e-08	95	Neighborhood of TERF1	www.broad.mit.e...
Broad MORF_GSPT1	View Gene Set	7.494e-09	41	3.333e-08	96	Neighborhood of GSPT1	www.broad.mit.e...
Broad GNF2_ANP32B	View Gene Set	1.149e-08	29	5.057e-08	97	Neighborhood of ANP32B	www.broad.mit.e...
Broad GCM_CSNK2B	View Gene Set	2.535e-08	88	1.093e-07	98	Neighborhood of CSNK2B	www.broad.mit.e...
Broad GNF2_TTK	View Gene Set	2.525e-08	34	1.093e-07	98	Neighborhood of TTK	www.broad.mit.e...
Broad GNF2_DAP3	View Gene Set	2.584e-08	98	1.103e-07	100	Neighborhood of DAP3	www.broad.mit.e...
Broad GNF2_SMC2L1	View Gene Set	3.43e-08	30	1.45e-07	101	Neighborhood of SMC2L1	www.broad.mit.e...
Broad MORF_CDK2	View Gene Set	4.372e-08	63	1.83e-07	102	Neighborhood of CDK2	www.broad.mit.e...
Broad GNF2_ELAC2	View Gene Set	4.482e-08	32	1.858e-07	103	Neighborhood of ELAC2	www.broad.mit.e...
Broad MORF_USP5	View Gene Set	4.721e-08	46	1.938e-07	104	Neighborhood of USP5	www.broad.mit.e...
Broad GNF2_CKS2	View Gene Set	5.7e-08	45	2.318e-07	105	Neighborhood of CKS2	www.broad.mit.e...
Broad GNF2_MKI67	View Gene Set	9.018e-08	26	3.633e-07	106	Neighborhood of MKI67	www.broad.mit.e...
Broad MORF_MTA1	View Gene Set	1.179e-07	95	4.706e-07	107	Neighborhood of MTA1	www.broad.mit.e...
Broad GCM_PSME1	View Gene Set	1.296e-07	76	5.124e-07	108	Neighborhood of PSME1	www.broad.mit.e...
Broad MORF_PRKAG1	View Gene Set	1.406e-07	202	5.506e-07	109	Neighborhood of PRKAG1	www.broad.mit.e...
Broad MORF_RAF1	View Gene Set	1.439e-07	94	5.585e-07	110	Neighborhood of RAF1	www.broad.mit.e...
Broad GNF2_UBE2I	View Gene Set	1.571e-07	33	6.044e-07	111	Neighborhood of UBE2I	www.broad.mit.e...
Broad GNF2_BUB1	View Gene Set	1.799e-07	25	6.86e-07	112	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_NPM1	View Gene Set	2.858e-07	152	1.08e-06	113	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_PPP1CA	View Gene Set	3.989e-07	145	1.494e-06	114	Neighborhood of PPP1CA	www.broad.mit.e...
Broad GNF2_SMC1L1	View Gene Set	4.124e-07	24	1.531e-06	115	Neighborhood of SMC1L1	www.broad.mit.e...
Broad MORF_CDC10	View Gene Set	5.067e-07	120	1.865e-06	116	Neighborhood of CDC10	www.broad.mit.e...
Broad GCM_RAF1	View Gene Set	6.953e-07	34	2.538e-06	117	Neighborhood of RAF1	www.broad.mit.e...
Broad GNF2_H2AFX	View Gene Set	7.612e-07	28	2.755e-06	118	Neighborhood of H2AFX	www.broad.mit.e...
Broad MORF_SKP1A	View Gene Set	8.537e-07	175	3.063e-06	119	Neighborhood of SKP1A	www.broad.mit.e...
Broad GCM_ANP32B	View Gene Set	1.005e-06	32	3.574e-06	120	Neighborhood of ANP32B	www.broad.mit.e...
Broad GCM_DDX5	View Gene Set	1.1e-06	52	3.882e-06	121	Neighborhood of DDX5	www.broad.mit.e...
Broad MORF_CCNF	View Gene Set	1.68e-06	65	5.881e-06	122	Neighborhood of CCNF	www.broad.mit.e...
Broad GNF2_RPA1	View Gene Set	3.352e-06	20	1.164e-05	123	Neighborhood of RPA1	www.broad.mit.e...
Broad GNF2_PPP6C	View Gene Set	5.101e-06	33	1.757e-05	124	Neighborhood of PPP6C	www.broad.mit.e...
Broad GCM_MAX	View Gene Set	5.204e-06	28	1.778e-05	125	Neighborhood of MAX	www.broad.mit.e...
Broad MORF_CCNI	View Gene Set	1.026e-05	76	3.477e-05	126	Neighborhood of CCNI	www.broad.mit.e...
Broad MORF_PSMC1	View Gene Set	1.705e-05	162	5.732e-05	127	Neighborhood of PSMC1	www.broad.mit.e...
Broad GCM_RAD21	View Gene Set	1.993e-05	30	6.65e-05	128	Neighborhood of RAD21	www.broad.mit.e...
Broad GNF2_BUB3	View Gene Set	2.288e-05	22	7.573e-05	129	Neighborhood of BUB3	www.broad.mit.e...
Broad MORF_AP3D1	View Gene Set	2.328e-05	119	7.645e-05	130	Neighborhood of AP3D1	www.broad.mit.e...
Broad GCM_DFFA	View Gene Set	2.792e-05	100	9.102e-05	131	Neighborhood of DFFA	www.broad.mit.e...
Broad MORF_RAD23B	View Gene Set	2.988e-05	159	9.664e-05	132	Neighborhood of RAD23B	www.broad.mit.e...
Broad MORF_EIF4A2	View Gene Set	3.083e-05	120	9.897e-05	133	Neighborhood of EIF4A2	www.broad.mit.e...
Broad GNF2_EIF3S6	View Gene Set	3.35e-05	109	0.0001067	134	Neighborhood of EIF3S6	www.broad.mit.e...
Broad GCM_SMARCC1	View Gene Set	3.608e-05	33	0.0001141	135	Neighborhood of SMARCC1	www.broad.mit.e...
Broad MORF_PRDX3	View Gene Set	4.271e-05	79	0.0001341	136	Neighborhood of PRDX3	www.broad.mit.e...
Broad GCM_TPR	View Gene Set	8.912e-05	29	0.0002778	137	Neighborhood of TPR	www.broad.mit.e...
Broad MORF_NME2	View Gene Set	9.725e-05	145	0.0003009	138	Neighborhood of NME2	www.broad.mit.e...
Broad GNF2_ST13	View Gene Set	0.0001144	56	0.0003515	139	Neighborhood of ST13	www.broad.mit.e...
Broad MORF_TERF2IP	View Gene Set	0.0001204	99	0.0003674	140	Neighborhood of TERF2IP	www.broad.mit.e...
Broad MORF_SNRP70	View Gene Set	0.0001859	50	0.0005629	141	Neighborhood of SNRP70	www.broad.mit.e...
Broad MORF_REV3L	View Gene Set	0.0002027	52	0.0006095	142	Neighborhood of REV3L	www.broad.mit.e...
Broad GCM_BECN1	View Gene Set	0.000499	59	0.00149	143	Neighborhood of BECN1	www.broad.mit.e...
Broad MORF_AP2M1	View Gene Set	0.0005152	197	0.001528	144	Neighborhood of AP2M1	www.broad.mit.e...
Broad MORF_RFC1	View Gene Set	0.0006335	98	0.001866	145	Neighborhood of RFC1	www.broad.mit.e...
Broad GCM_PFN1	View Gene Set	0.001141	47	0.003336	146	Neighborhood of PFN1	www.broad.mit.e...
Broad GCM_RING1	View Gene Set	0.001348	106	0.003915	147	Neighborhood of RING1	www.broad.mit.e...
Broad MORF_BMI1	View Gene Set	0.002374	71	0.00685	148	Neighborhood of BMI1	www.broad.mit.e...
Broad GCM_PPM1D	View Gene Set	0.002577	22	0.007385	149	Neighborhood of PPM1D	www.broad.mit.e...
Broad GCM_SUPT4H1	View Gene Set	0.003579	58	0.01019	150	Neighborhood of SUPT4H1	www.broad.mit.e...
Broad GCM_AIP	View Gene Set	0.003805	36	0.01076	151	Neighborhood of AIP	www.broad.mit.e...
Broad MORF_RAP1A	View Gene Set	0.003878	122	0.01089	152	Neighborhood of RAP1A	www.broad.mit.e...
Broad MORF_SS18	View Gene Set	0.004736	55	0.01322	153	Neighborhood of SS18	www.broad.mit.e...
Broad MORF_TPR	View Gene Set	0.005038	131	0.01397	154	Neighborhood of TPR	www.broad.mit.e...
Broad GCM_HBP1	View Gene Set	0.005589	54	0.0154	155	Neighborhood of HBP1	www.broad.mit.e...
Broad MORF_PPP2R5E	View Gene Set	0.00641	76	0.01754	156	Neighborhood of PPP2R5E	www.broad.mit.e...
Broad MORF_ACTG1	View Gene Set	0.006489	134	0.01765	157	Neighborhood of ACTG1	www.broad.mit.e...
Broad GCM_FANCC	View Gene Set	0.006591	120	0.01781	158	Neighborhood of FANCC	www.broad.mit.e...
Broad GCM_HDAC1	View Gene Set	0.006784	30	0.01822	159	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_FANCG	View Gene Set	0.007011	148	0.01871	160	Neighborhood of FANCG	www.broad.mit.e...
Broad GCM_DENR	View Gene Set	0.00808	40	0.02143	161	Neighborhood of DENR	www.broad.mit.e...
Broad MORF_SP3	View Gene Set	0.008227	69	0.02169	162	Neighborhood of SP3	www.broad.mit.e...
Broad GCM_CASP2	View Gene Set	0.008619	21	0.02258	163	Neighborhood of CASP2	www.broad.mit.e...
Broad MORF_HEAB	View Gene Set	0.00893	71	0.02325	164	Neighborhood of HEAB	www.broad.mit.e...
Broad MORF_RFC5	View Gene Set	0.01033	69	0.02674	165	Neighborhood of RFC5	www.broad.mit.e...
Broad GCM_CSNK1A1	View Gene Set	0.01119	28	0.02879	166	Neighborhood of CSNK1A1	www.broad.mit.e...
Broad GNF2_CDC27	View Gene Set	0.01163	56	0.02974	167	Neighborhood of CDC27	www.broad.mit.e...
Broad MORF_RAC1	View Gene Set	0.01194	196	0.03035	168	Neighborhood of RAC1	www.broad.mit.e...
Broad GCM_SMARCD1	View Gene Set	0.01264	101	0.03194	169	Neighborhood of SMARCD1	www.broad.mit.e...
Broad GCM_DPF2	View Gene Set	0.01482	32	0.03722	170	Neighborhood of DPF2	www.broad.mit.e...
Broad MORF_BAG5	View Gene Set	0.01548	48	0.03865	171	Neighborhood of BAG5	www.broad.mit.e...
Broad GCM_MLL	View Gene Set	0.01586	130	0.03938	172	Neighborhood of MLL	www.broad.mit.e...
Broad MORF_PAPSS1	View Gene Set	0.01611	98	0.03975	173	Neighborhood of PAPSS1	www.broad.mit.e...
Broad MORF_PSMC2	View Gene Set	0.01883	100	0.04621	174	Neighborhood of PSMC2	www.broad.mit.e...
Broad MORF_FDXR	View Gene Set	0.01978	205	0.04826	175	Neighborhood of FDXR	www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad module_17	View Gene Set	3.53e-16	351	1.603e-13	1	Genes in module_17	www.broad.mit.e...
Broad module_244	View Gene Set	2.707e-14	182	6.146e-12	2	Genes in module_244	www.broad.mit.e...
Broad module_32	View Gene Set	1.095e-13	227	1.286e-11	3	Genes in module_32	www.broad.mit.e...
Broad module_198	View Gene Set	1.133e-13	288	1.286e-11	3	Genes in module_198	www.broad.mit.e...
Broad module_54	View Gene Set	2.623e-13	242	2.382e-11	5	Genes in module_54	www.broad.mit.e...
Broad module_183	View Gene Set	5.41e-13	52	4.094e-11	6	Genes in module_183	www.broad.mit.e...
Broad module_98	View Gene Set	6.606e-13	375	4.285e-11	7	Genes in module_98	www.broad.mit.e...
Broad module_252	View Gene Set	7.455e-12	224	4.23e-10	8	Genes in module_252	www.broad.mit.e...
Broad module_158	View Gene Set	4.134e-09	41	2.085e-07	9	Genes in module_158	www.broad.mit.e...
Broad module_125	View Gene Set	1.293e-08	42	5.871e-07	10	Genes in module_125	www.broad.mit.e...
Broad module_35	View Gene Set	2.231e-08	16	9.208e-07	11	Genes in module_35	www.broad.mit.e...
Broad module_110	View Gene Set	8.34e-08	15	3.155e-06	12	Genes in module_110	www.broad.mit.e...
Broad module_219	View Gene Set	1.022e-07	26	3.568e-06	13	Genes in module_219	www.broad.mit.e...
Broad module_124	View Gene Set	1.824e-07	92	5.914e-06	14	Genes in module_124	www.broad.mit.e...
Broad module_133	View Gene Set	3.287e-07	15	9.949e-06	15	Genes in module_133	www.broad.mit.e...
Broad module_160	View Gene Set	4.416e-07	15	1.253e-05	16	Genes in module_160	www.broad.mit.e...
Broad module_57	View Gene Set	7.248e-07	54	1.936e-05	17	Genes in module_57	www.broad.mit.e...
Broad module_61	View Gene Set	1.019e-06	50	2.569e-05	18	Genes in module_61	www.broad.mit.e...
Broad module_337	View Gene Set	1.242e-06	59	2.967e-05	19	Genes in module_337	www.broad.mit.e...
Broad module_397	View Gene Set	3.596e-06	114	8.162e-05	20	Genes in module_397	www.broad.mit.e...
Broad module_8	View Gene Set	3.994e-06	403	8.636e-05	21	Genes in module_8	www.broad.mit.e...
Broad module_392	View Gene Set	1.176e-05	18	0.0002426	22	Genes in module_392	www.broad.mit.e...
Broad module_278	View Gene Set	1.826e-05	34	0.0003605	23	Genes in module_278	www.broad.mit.e...
Broad module_91	View Gene Set	2.078e-05	37	0.0003931	24	Genes in module_91	www.broad.mit.e...
Broad module_28	View Gene Set	2.304e-05	32	0.0004023	25	Genes in module_28	www.broad.mit.e...
Broad module_83	View Gene Set	2.271e-05	296	0.0004023	25	Genes in module_83	www.broad.mit.e...
Broad module_102	View Gene Set	3.5e-05	18	0.0005885	27	Genes in module_102	www.broad.mit.e...
Broad module_197	View Gene Set	3.837e-05	170	0.0006221	28	Genes in module_197	www.broad.mit.e...
Broad module_16	View Gene Set	5.613e-05	495	0.0008495	29	Genes in module_16	www.broad.mit.e...
Broad module_320	View Gene Set	5.493e-05	19	0.0008495	29	Genes in module_320	www.broad.mit.e...
Broad module_388	View Gene Set	9.571e-05	17	0.001402	31	Genes in module_388	www.broad.mit.e...
Broad module_403	View Gene Set	0.0001002	44	0.001422	32	Genes in module_403	www.broad.mit.e...
Broad module_53	View Gene Set	0.0001524	389	0.002097	33	Genes in module_53	www.broad.mit.e...
Broad module_457	View Gene Set	0.0002229	9	0.002976	34	Genes in module_457	www.broad.mit.e...
Broad module_3	View Gene Set	0.0002673	374	0.003467	35	Genes in module_3	www.broad.mit.e...
Broad module_273	View Gene Set	0.0003304	50	0.004167	36	Genes in module_273	www.broad.mit.e...
Broad module_538	View Gene Set	0.0004454	8	0.005465	37	Genes in module_538	www.broad.mit.e...
Broad module_126	View Gene Set	0.0005122	173	0.006119	38	Genes in module_126	www.broad.mit.e...
Broad module_21	View Gene Set	0.0005314	10	0.006186	39	Genes in module_21	www.broad.mit.e...
Broad module_50	View Gene Set	0.0005777	13	0.006549	40	Genes in module_50	www.broad.mit.e...
Broad module_352	View Gene Set	0.0005914	17	0.006549	40	Genes in module_352	www.broad.mit.e...
Broad module_306	View Gene Set	0.0008316	26	0.008989	42	Genes in module_306	www.broad.mit.e...
Broad module_42	View Gene Set	0.001142	25	0.01205	43	Genes in module_42	www.broad.mit.e...
Broad module_77	View Gene Set	0.001236	28	0.01247	44	Genes in module_77	www.broad.mit.e...
Broad module_149	View Gene Set	0.001232	36	0.01247	44	Genes in module_149	www.broad.mit.e...
Broad module_376	View Gene Set	0.001288	7	0.01272	46	Genes in module_376	www.broad.mit.e...
Broad module_450	View Gene Set	0.002085	9	0.02014	47	Genes in module_450	www.broad.mit.e...
Broad module_18	View Gene Set	0.002483	434	0.02349	48	Genes in module_18	www.broad.mit.e...
Broad module_115	View Gene Set	0.002729	27	0.02529	49	Genes in module_115	www.broad.mit.e...
Broad module_152	View Gene Set	0.002997	121	0.02721	50	Genes in module_152	www.broad.mit.e...
Broad module_31	View Gene Set	0.003568	7	0.03176	51	Genes in module_31	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	1.807e-31	1197	1.49e-28	1	Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS	View Gene Set	9.347e-24	801	3.4e-21	2	Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad RNA_PROCESSING	View Gene Set	1.237e-23	147	3.4e-21	2	Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS	View Gene Set	4.857e-19	1623	1.002e-16	4	Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad RNA_SPLICING	View Gene Set	2.472e-13	73	4.08e-11	5	Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.	www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS	View Gene Set	1.361e-11	253	1.871e-09	6	Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY	View Gene Set	1.019e-10	74	1.201e-08	7	Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together.	www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS	View Gene Set	4.7e-10	70	4.847e-08	8	Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes.	www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397	View Gene Set	6.255e-10	59	5.734e-08	9	Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	www.broad.mit.e...
Broad TRANSCRIPTION	View Gene Set	4.431e-09	738	3.655e-07	10	Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT	View Gene Set	1.883e-08	623	1.295e-06	11	Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA.	www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS	View Gene Set	1.863e-08	625	1.295e-06	11	Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.	www.broad.mit.e...
Broad DNA_REPLICATION	View Gene Set	2.249e-08	101	1.427e-06	13	Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.	www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS	View Gene Set	2.764e-07	117	1.629e-05	14	Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.	www.broad.mit.e...
Broad M_PHASE	View Gene Set	3.381e-07	111	1.86e-05	15	Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division.	www.broad.mit.e...
Broad CELLULAR_BIOSYNTHETIC_PROCESS	View Gene Set	5.134e-07	311	2.551e-05	16	Genes annotated by the GO term GO:0044249. The chemical reactions and pathways resulting in the formation of substances carried out by individual cells.	www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION	View Gene Set	5.411e-07	660	2.551e-05	16	Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.	www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS	View Gene Set	5.829e-07	27	2.551e-05	16	Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions.	www.broad.mit.e...
Broad TRANSLATION	View Gene Set	5.875e-07	177	2.551e-05	16	Genes annotated by the GO term GO:0006412. The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.	www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY	View Gene Set	8.783e-07	59	3.623e-05	20	Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.	www.broad.mit.e...
Broad TRNA_METABOLIC_PROCESS	View Gene Set	1.084e-06	18	4.257e-05	21	Genes annotated by the GO term GO:0006399. The chemical reactions and pathways involving tRNA transfer RNA a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases the function of which has not been completely established.	www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS	View Gene Set	1.277e-06	159	4.79e-05	22	Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.	www.broad.mit.e...
Broad DNA_REPAIR	View Gene Set	1.415e-06	123	4.869e-05	23	Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway.	www.broad.mit.e...
Broad CELL_CYCLE_PROCESS	View Gene Set	1.416e-06	187	4.869e-05	23	Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad COENZYME_METABOLIC_PROCESS	View Gene Set	1.74e-06	37	5.741e-05	25	Genes annotated by the GO term GO:0006732. The chemical reactions and pathways involving coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed.	www.broad.mit.e...
Broad CELL_CYCLE_PHASE	View Gene Set	2.41e-06	167	7.468e-05	26	Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION_EPIGENETIC	View Gene Set	2.444e-06	30	7.468e-05	26	Genes annotated by the GO term GO:0040029. Any process that modulates the frequency rate or extent of gene expression; the process is mitotically or meiotically heritable or is stably self-propagated in the cytoplasm of a resting cell and does not entail a change in DNA sequence.	www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049	View Gene Set	2.806e-06	304	8.267e-05	28	Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.	www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS	View Gene Set	3.489e-06	53	9.927e-05	29	Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.	www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	3.72e-06	449	0.0001023	30	Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).	www.broad.mit.e...
Broad RESPONSE_TO_ENDOGENOUS_STIMULUS	View Gene Set	5.403e-06	197	0.0001438	31	Genes annotated by the GO term GO:0009719. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an endogenous stimulus.	www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_TRANSPORT	View Gene Set	6.198e-06	31	0.0001598	32	Genes annotated by the GO term GO:0015931. The directed movement of nucleobases nucleosides nucleotides and nucleic acids into out of within or between cells.	www.broad.mit.e...
Broad ONE_CARBON_COMPOUND_METABOLIC_PROCESS	View Gene Set	7.86e-06	26	0.0001965	33	Genes annotated by the GO term GO:0006730. The chemical reactions and pathways involving compounds containing a single carbon atom.	www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE	View Gene Set	1.542e-05	83	0.0003741	34	Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place.	www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY	View Gene Set	1.739e-05	14	0.00041	35	Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis.	www.broad.mit.e...
Broad RNA_EXPORT_FROM_NUCLEUS	View Gene Set	1.889e-05	20	0.0004329	36	Genes annotated by the GO term GO:0006405. The directed movement of RNA from the nucleus to the cytoplasm.	www.broad.mit.e...
Broad MITOSIS	View Gene Set	2.764e-05	81	0.0006163	37	Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother.	www.broad.mit.e...
Broad AMINO_ACID_METABOLIC_PROCESS	View Gene Set	3.844e-05	75	0.0008346	38	Genes annotated by the GO term GO:0006520. The chemical reactions and pathways involving amino acids organic acids containing one or more amino substituents.	www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE	View Gene Set	4.488e-05	148	0.0009255	39	Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent.	www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	4.42e-05	601	0.0009255	39	Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION	View Gene Set	6.592e-05	555	0.001326	41	Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad ESTABLISHMENT_AND_OR_MAINTENANCE_OF_CHROMATIN_ARCHITECTURE	View Gene Set	9.863e-05	72	0.001937	42	Genes annotated by the GO term GO:0006325. The specification formation and maintenance of the physical structure of eukaryotic chromatin.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT	View Gene Set	0.0001259	452	0.002415	43	Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription.	www.broad.mit.e...
Broad BASE_EXCISION_REPAIR	View Gene Set	0.0001356	16	0.002542	44	Genes annotated by the GO term GO:0006284. In base excision repair an altered base is removed by a DNA glycosylase enzyme followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY	View Gene Set	0.0001433	271	0.002626	45	Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex.	www.broad.mit.e...
Broad MITOCHONDRION_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.0001568	47	0.002812	46	Genes annotated by the GO term GO:0007005. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a mitochondrion; includes mitochondrial morphology and distribution and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.	www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	0.0001637	457	0.002874	47	Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	0.0001765	767	0.003034	48	Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY	View Gene Set	0.0001923	288	0.003238	49	Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell.	www.broad.mit.e...
Broad DNA_MODIFICATION	View Gene Set	0.0002088	10	0.003445	50	Genes annotated by the GO term GO:0006304. The covalent alteration of one or more nucleotide sites in DNA resulting in a change in its properties.	www.broad.mit.e...
Broad RRNA_PROCESSING	View Gene Set	0.0002736	11	0.004426	51	Genes annotated by the GO term GO:0006364. Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.	www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS	View Gene Set	0.0003123	779	0.004955	52	Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism.	www.broad.mit.e...
Broad CHROMATIN_ASSEMBLY_OR_DISASSEMBLY	View Gene Set	0.0003429	26	0.005338	53	Genes annotated by the GO term GO:0006333. The formation or destruction of chromatin structures.	www.broad.mit.e...
Broad CELLULAR_PROTEIN_COMPLEX_DISASSEMBLY	View Gene Set	0.0004244	13	0.006484	54	Genes annotated by the GO term GO:0043624. The disaggregation of a protein complex into its constituent components occurring at the level of an individual cell. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad TRNA_PROCESSING	View Gene Set	0.0004434	10	0.006651	55	Genes annotated by the GO term GO:0008033. The process by which a pre-tRNA molecule is converted to a mature tRNA ready for addition of an aminoacyl group.	www.broad.mit.e...
Broad CATABOLIC_PROCESS	View Gene Set	0.0004536	221	0.006682	56	Genes annotated by the GO term GO:0009056. The chemical reactions and pathways resulting in the breakdown of substances including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.	www.broad.mit.e...
Broad CELLULAR_CATABOLIC_PROCESS	View Gene Set	0.0005401	209	0.007706	57	Genes annotated by the GO term GO:0044248. The chemical reactions and pathways resulting in the breakdown of substances carried out by individual cells.	www.broad.mit.e...
Broad RRNA_METABOLIC_PROCESS	View Gene Set	0.0005417	12	0.007706	57	Genes annotated by the GO term GO:0016072. The chemical reactions and pathways involving rRNA ribosomal RNA a structural constituent of ribosomes.	www.broad.mit.e...
Broad PROTEIN_COMPLEX_DISASSEMBLY	View Gene Set	0.0008018	14	0.01121	59	Genes annotated by the GO term GO:0043241. The disaggregation of a protein complex into its constituent components. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad BIOPOLYMER_CATABOLIC_PROCESS	View Gene Set	0.0008295	115	0.01141	60	Genes annotated by the GO term GO:0043285. The chemical reactions and pathways resulting in the breakdown of biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad MACROMOLECULE_CATABOLIC_PROCESS	View Gene Set	0.001033	135	0.01374	61	Genes annotated by the GO term GO:0009057. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates.	www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_CATABOLIC_PROCESS	View Gene Set	0.001027	103	0.01374	61	Genes annotated by the GO term GO:0044265. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates as carried out by individual cells.	www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.001095	34	0.01434	63	Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.	www.broad.mit.e...
Broad AMINO_ACID_AND_DERIVATIVE_METABOLIC_PROCESS	View Gene Set	0.00117	98	0.01508	64	Genes annotated by the GO term GO:0006519. The chemical reactions and pathways involving amino acids organic acids containing one or more amino substituents and compounds derived from amino acids.	www.broad.mit.e...
Broad NUCLEAR_EXPORT	View Gene Set	0.001194	31	0.01515	65	Genes annotated by the GO term GO:0051168. The directed movement of substances out of the nucleus.	www.broad.mit.e...
Broad CHROMATIN_MODIFICATION	View Gene Set	0.001273	50	0.01591	66	Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure.	www.broad.mit.e...
Broad INTRACELLULAR_RECEPTOR_MEDIATED_SIGNALING_PATHWAY	View Gene Set	0.001324	21	0.0163	67	Genes annotated by the GO term GO:0030522. Any series of molecular signals initiated by a ligand entering the target cell where it binds to an intracellular receptor.	www.broad.mit.e...
Broad TRANSLATIONAL_INITIATION	View Gene Set	0.001353	39	0.01641	68	Genes annotated by the GO term GO:0006413. The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome mRNA and an initiation complex that contains the first aminoacyl-tRNA.	www.broad.mit.e...
Broad RNA_CATABOLIC_PROCESS	View Gene Set	0.001419	22	0.01696	69	Genes annotated by the GO term GO:0006401. The chemical reactions and pathways resulting in the breakdown of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad RESPONSE_TO_ABIOTIC_STIMULUS	View Gene Set	0.001504	87	0.01772	70	Genes annotated by the GO term GO:0009628. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of an abiotic (non-living) stimulus.	www.broad.mit.e...
Broad DNA_INTEGRITY_CHECKPOINT	View Gene Set	0.001582	23	0.01821	71	Genes annotated by the GO term GO:0031570. Any cell cycle checkpoint that delays or arrests cell cycle progression in response to changes in DNA structure.	www.broad.mit.e...
Broad GLIOGENESIS	View Gene Set	0.00159	11	0.01821	71	Genes annotated by the GO term GO:0042063. The process by which glial cells are generated. This includes the production of glial progenitors and their differentiation into mature glia.	www.broad.mit.e...
Broad SPLICEOSOME_ASSEMBLY	View Gene Set	0.001637	13	0.01851	73	Genes annotated by the GO term GO:0000245. The aggregation arrangement and bonding together of the spliceosome a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_DISASSEMBLY	View Gene Set	0.00171	15	0.01906	74	Genes annotated by the GO term GO:0032984. The disaggregation of a macromolecular complex into its constituent components.	www.broad.mit.e...
Broad N_TERMINAL_PROTEIN_AMINO_ACID_MODIFICATION	View Gene Set	0.001779	6	0.01928	75	Genes annotated by the GO term GO:0031365. The alteration of the N-terminal amino acid residue in a protein.	www.broad.mit.e...
Broad PROTEIN_TARGETING_TO_MITOCHONDRION	View Gene Set	0.001813	10	0.01928	75	Genes annotated by the GO term GO:0006626. The process of directing proteins towards and into the mitochondrion mediated by mitochondrial proteins that recognize signals contained within the imported protein.	www.broad.mit.e...
Broad STEROID_HORMONE_RECEPTOR_SIGNALING_PATHWAY	View Gene Set	0.001823	20	0.01928	75	Genes annotated by the GO term GO:0030518. Any series of molecular signals generated as a consequence of a steroid hormone binding to its receptor.	www.broad.mit.e...
Broad NUCLEOCYTOPLASMIC_TRANSPORT	View Gene Set	0.001821	83	0.01928	75	Genes annotated by the GO term GO:0006913. The directed movement of molecules between the nucleus and the cytoplasm.	www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.002053	458	0.02144	79	Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell.	www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075	View Gene Set	0.002235	47	0.02304	80	Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage.	www.broad.mit.e...
Broad BIOSYNTHETIC_PROCESS	View Gene Set	0.002335	459	0.02325	81	Genes annotated by the GO term GO:0009058. The energy-requiring part of metabolism in which simpler substances are transformed into more complex ones as in growth and other biosynthetic processes.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.002339	285	0.02325	81	Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter.	www.broad.mit.e...
Broad MITOCHONDRIAL_TRANSPORT	View Gene Set	0.002284	20	0.02325	81	Genes annotated by the GO term GO:0006839. Transport of substances into out of or within a mitochondrion.	www.broad.mit.e...
Broad GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY	View Gene Set	0.002469	122	0.02397	84	Genes annotated by the GO term GO:0006091. The chemical reactions and pathways resulting in the formation of precursor metabolites substances from which energy is derived and the processes involved in the liberation of energy from these substances.	www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_III_PROMOTER	View Gene Set	0.002453	19	0.02397	84	Genes annotated by the GO term GO:0006383. The synthesis of RNA from a DNA template by RNA polymerase III (Pol III) originating at a Pol III-specific promoter.	www.broad.mit.e...
Broad MEIOTIC_CELL_CYCLE	View Gene Set	0.002529	34	0.02426	86	Genes annotated by the GO term GO:0051321. Progression through the phases of the meiotic cell cycle in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell.	www.broad.mit.e...
Broad CELLULAR_RESPIRATION	View Gene Set	0.00277	19	0.02627	87	Genes annotated by the GO term GO:0045333. The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration).	www.broad.mit.e...
Broad NUCLEAR_TRANSPORT	View Gene Set	0.002932	84	0.02749	88	Genes annotated by the GO term GO:0051169. The directed movement of substances into out of or within the nucleus.	www.broad.mit.e...
Broad ELECTRON_TRANSPORT_GO_0006118	View Gene Set	0.003177	51	0.02945	89	Genes annotated by the GO term GO:0006118. The transport of electrons from an electron donor to an electron acceptor.	www.broad.mit.e...
Broad RESPONSE_TO_HEAT	View Gene Set	0.003326	10	0.03049	90	Genes annotated by the GO term GO:0009408. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a heat stimulus a temperature stimulus above the optimal temperature for that organism.	www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION	View Gene Set	0.003539	55	0.03209	91	Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.	www.broad.mit.e...
Broad MEIOSIS_I	View Gene Set	0.004423	19	0.03924	92	Genes annotated by the GO term GO:0007127. Progression through the first phase of meiosis in which cells divide and homologous chromosomes are paired and segregated from each other producing two daughter cells.	www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.004393	9	0.03924	92	Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle.	www.broad.mit.e...
Broad AEROBIC_RESPIRATION	View Gene Set	0.004539	15	0.03984	94	Genes annotated by the GO term GO:0009060. The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.	www.broad.mit.e...
Broad COENZYME_BIOSYNTHETIC_PROCESS	View Gene Set	0.005468	10	0.04749	95	Genes annotated by the GO term GO:0009108. The chemical reactions and pathways resulting in the formation of coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed.	www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.005711	10	0.04908	96	Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart.	www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEAR_PART	View Gene Set	5.436e-34	543	6.333e-32	1	Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	www.broad.mit.e...
Broad NUCLEUS	View Gene Set	2.785e-34	1353	6.333e-32	1	Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent.	www.broad.mit.e...
Broad ORGANELLE_LUMEN	View Gene Set	7.29e-24	434	4.247e-22	3	Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen.	www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN	View Gene Set	7.29e-24	434	4.247e-22	3	Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes.	www.broad.mit.e...
Broad MITOCHONDRION	View Gene Set	1.663e-23	335	7.748e-22	5	Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART	View Gene Set	1.288e-20	1144	5.002e-19	6	Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad ORGANELLE_PART	View Gene Set	2.47e-20	1149	8.222e-19	7	Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad NUCLEAR_LUMEN	View Gene Set	4.496e-20	365	1.31e-18	8	Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	1.424e-18	129	3.687e-17	9	Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX	View Gene Set	3.976e-18	914	9.264e-17	10	Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together.	www.broad.mit.e...
Broad MITOCHONDRIAL_PART	View Gene Set	4.935e-16	140	1.045e-14	11	Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	www.broad.mit.e...
Broad ENVELOPE	View Gene Set	1.423e-13	165	2.551e-12	12	Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers.	www.broad.mit.e...
Broad ORGANELLE_ENVELOPE	View Gene Set	1.423e-13	165	2.551e-12	12	Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes.	www.broad.mit.e...
Broad NUCLEOPLASM	View Gene Set	1.474e-12	266	2.453e-11	14	Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad NUCLEOLUS	View Gene Set	7.718e-11	116	1.199e-09	15	Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.	www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE	View Gene Set	2.564e-10	85	3.735e-09	16	Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.	www.broad.mit.e...
Broad PROTEIN_COMPLEX	View Gene Set	4.12e-10	799	5.647e-09	17	Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE	View Gene Set	9.142e-10	95	1.183e-08	18	Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.	www.broad.mit.e...
Broad NUCLEOPLASM_PART	View Gene Set	1.699e-09	202	2.084e-08	19	Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE	View Gene Set	6.611e-09	74	7.701e-08	20	Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites.	www.broad.mit.e...
Broad MITOCHONDRIAL_INNER_MEMBRANE	View Gene Set	9.177e-09	66	1.018e-07	21	Genes annotated by the GO term GO:0005743. The inner i.e. lumen-facing lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.	www.broad.mit.e...
Broad MITOCHONDRIAL_MATRIX	View Gene Set	1.523e-08	46	1.543e-07	22	Genes annotated by the GO term GO:0005759. The gel-like material with considerable fine structure that lies in the matrix space or lumen of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and in some organisms the enzymes concerned with fatty-acid oxidation.	www.broad.mit.e...
Broad MITOCHONDRIAL_LUMEN	View Gene Set	1.523e-08	46	1.543e-07	22	Genes annotated by the GO term GO:0031980. The volume enclosed by the mitochondrial inner membrane.	www.broad.mit.e...
Broad SPLICEOSOME	View Gene Set	4.757e-08	44	4.618e-07	24	Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron.	www.broad.mit.e...
Broad CHROMOSOME	View Gene Set	1.072e-07	122	9.99e-07	25	Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	3.7e-07	20	3.316e-06	26	Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs.	www.broad.mit.e...
Broad CHROMOSOMAL_PART	View Gene Set	9.836e-07	95	8.488e-06	27	Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad PORE_COMPLEX	View Gene Set	1.118e-06	34	9.305e-06	28	Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids.	www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE_PART	View Gene Set	1.208e-06	52	9.705e-06	29	Genes annotated by the GO term GO:0044455. Any constituent part of the mitochondrial membrane either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.	www.broad.mit.e...
Broad NUCLEAR_PORE	View Gene Set	1.275e-06	29	9.901e-06	30	Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE	View Gene Set	1.673e-06	48	1.257e-05	31	Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.	www.broad.mit.e...
Broad ORGANELLAR_RIBOSOME	View Gene Set	1.823e-06	22	1.287e-05	32	Genes annotated by the GO term GO:0000313. A ribosome contained within a subcellular organelle.	www.broad.mit.e...
Broad MITOCHONDRIAL_RIBOSOME	View Gene Set	1.823e-06	22	1.287e-05	32	Genes annotated by the GO term GO:0005761. A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes.	www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART	View Gene Set	2.409e-06	40	1.651e-05	34	Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells.	www.broad.mit.e...
Broad RIBOSOMAL_SUBUNIT	View Gene Set	9.359e-06	20	6.231e-05	35	Genes annotated by the GO term GO:0033279. Either of the two ribonucleoprotein complexes that associate to form a ribosome.	www.broad.mit.e...
Broad NUCLEAR_ENVELOPE	View Gene Set	1.474e-05	71	9.538e-05	36	Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space).	www.broad.mit.e...
Broad CHROMATIN	View Gene Set	2.482e-05	35	0.0001563	37	Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome.	www.broad.mit.e...
Broad RIBOSOME	View Gene Set	2.88e-05	39	0.0001766	38	Genes annotated by the GO term GO:0005840. An intracellular organelle about 200 A in diameter consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits one large and one small each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients expressed in Svedberg units (symbol: S). Hence the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes eukaryotes mitochondria and chloroplasts have characteristically distinct ribosomal proteins.	www.broad.mit.e...
Broad NUCLEOLAR_PART	View Gene Set	3.746e-05	16	0.0002238	39	Genes annotated by the GO term GO:0044452. Any constituent part of a nucleolus a small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis.	www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	6.075e-05	9	0.0003539	40	Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA.	www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASEII_HOLOENZYME	View Gene Set	9.753e-05	65	0.0005543	41	Genes annotated by the GO term GO:0016591. Large protein complex composed of the RNA polymerase core complex and a variety of other proteins including transcription factor complexes TFIIA D E F and H which are required for promoter recognition and the Mediator subcomplex. Catalyzes the synthesis of eukaryotic pre-mRNA.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME	View Gene Set	0.0001347	53	0.000747	42	Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	0.0003695	613	0.001913	43	Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	0.0003695	613	0.001913	43	Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad CONDENSED_CHROMOSOME	View Gene Set	0.0003678	32	0.001913	43	Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.	www.broad.mit.e...
Broad PROTEASOME_COMPLEX	View Gene Set	0.000388	23	0.001965	46	Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.	www.broad.mit.e...
Broad ORGANELLAR_SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.0005787	11	0.002752	47	Genes annotated by the GO term GO:0000314. The smaller of the two subunits of an organellar ribosome.	www.broad.mit.e...
Broad MITOCHONDRIAL_SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.0005787	11	0.002752	47	Genes annotated by the GO term GO:0005763. The smaller of the two subunits of a mitochondrial ribosome.	www.broad.mit.e...
Broad SMALL_RIBOSOMAL_SUBUNIT	View Gene Set	0.0005787	11	0.002752	47	Genes annotated by the GO term GO:0015935. The smaller of the two subunits of a ribosome.	www.broad.mit.e...
Broad MITOCHONDRIAL_OUTER_MEMBRANE	View Gene Set	0.0008002	18	0.003729	50	Genes annotated by the GO term GO:0005741. The outer i.e. cytoplasm-facing lipid bilayer of the mitochondrial envelope.	www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX	View Gene Set	0.001172	16	0.004966	51	Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity.	www.broad.mit.e...
Broad CONDENSED_NUCLEAR_CHROMOSOME	View Gene Set	0.00116	17	0.004966	51	Genes annotated by the GO term GO:0000794. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure that remains in the nucleus.	www.broad.mit.e...
Broad MICROTUBULE_ORGANIZING_CENTER	View Gene Set	0.001131	64	0.004966	51	Genes annotated by the GO term GO:0005815. A region in a eukaryotic cell such as a centrosome or basal body from which microtubules grow.	www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX	View Gene Set	0.001172	16	0.004966	51	Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits.	www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX	View Gene Set	0.001172	16	0.004966	51	Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity.	www.broad.mit.e...
Broad NUCLEAR_BODY	View Gene Set	0.001222	31	0.005086	56	Genes annotated by the GO term GO:0016604. Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART	View Gene Set	0.001279	33	0.005229	57	Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad ORGANELLE_OUTER_MEMBRANE	View Gene Set	0.001303	24	0.005235	58	Genes annotated by the GO term GO:0031968. The outer i.e. cytoplasm-facing lipid bilayer of an organelle envelope.	www.broad.mit.e...
Broad INTEGRATOR_COMPLEX	View Gene Set	0.001647	13	0.006506	59	Genes annotated by the GO term GO:0032039. A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_COMPLEX	View Gene Set	0.001933	84	0.007508	60	Genes annotated by the GO term GO:0005667. Any complex distinct from RNA polymerase including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences and regulating transcription.	www.broad.mit.e...
Broad OUTER_MEMBRANE	View Gene Set	0.002558	25	0.009773	61	Genes annotated by the GO term GO:0019867. The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.	www.broad.mit.e...
Broad EUKARYOTIC_TRANSLATION_INITIATION_FACTOR_3_COMPLEX	View Gene Set	0.003966	10	0.01491	62	Genes annotated by the GO term GO:0005852. A complex of several polypeptides that plays at least two important roles in protein synthesis: First eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex.	www.broad.mit.e...
Broad MITOCHONDRIAL_RESPIRATORY_CHAIN	View Gene Set	0.004299	24	0.0159	63	Genes annotated by the GO term GO:0005746. The protein complexes that form the mitochondrial electron transport system (the respiratory chain). Complexes I III and IV can transport protons if embedded in an oriented membrane such as an intact mitochondrial inner membrane.	www.broad.mit.e...
Broad NADH_DEHYDROGENASE_COMPLEX	View Gene Set	0.005082	15	0.01794	64	Genes annotated by the GO term GO:0030964. An integral membrane complex that possesses NADH oxidoreductase activity. The complex is one of the components of the electron transport chain. It catalyses the transfer of a pair of electrons from NADH to a quinone.	www.broad.mit.e...
Broad MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_I	View Gene Set	0.005082	15	0.01794	64	Genes annotated by the GO term GO:0005747. A part of the respiratory chain located in the mitochondrion. It contains about 25 different polypeptide subunits including NADH dehydrogenase (ubiquinone) flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III) and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone.	www.broad.mit.e...
Broad RESPIRATORY_CHAIN_COMPLEX_I	View Gene Set	0.005082	15	0.01794	64	Genes annotated by the GO term GO:0045271. Respiratory chain complex I is an enzyme of the respiratory chain. It consists of at least 34 polypeptide chains and is L-shaped with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix. The electrons of NADH enter the chain at this complex.	www.broad.mit.e...
Broad ORGANELLE_MEMBRANE	View Gene Set	0.005394	290	0.01876	67	Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle.	www.broad.mit.e...
Broad CENTROSOME	View Gene Set	0.006135	55	0.02102	68	Genes annotated by the GO term GO:0005813. A structure comprised of a core structure (in most organisms a pair of centrioles) and peripheral material from which a microtubule-based structure such as a spindle apparatus is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells though in animal cells it changes continually during the cell-division cycle.	www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION	View Gene Set	0.006628	31	0.02238	69	Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome.	www.broad.mit.e...
Broad NUCLEAR_SPECK	View Gene Set	0.007105	10	0.02365	70	Genes annotated by the GO term GO:0016607. A discrete extra-nucleolar subnuclear domain 20-50 in number in which splicing factors are seen to be localized by immunofluorescence microscopy.	www.broad.mit.e...
Broad REPLICATION_FORK	View Gene Set	0.007376	18	0.02387	71	Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad NUCLEAR_CHROMATIN	View Gene Set	0.007347	14	0.02387	71	Genes annotated by the GO term GO:0000790. The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus.	www.broad.mit.e...
Broad SPINDLE_MICROTUBULE	View Gene Set	0.01213	15	0.0387	73	Genes annotated by the GO term GO:0005876. Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.	www.broad.mit.e...
Broad SPINDLE	View Gene Set	0.01313	37	0.04135	74	Genes annotated by the GO term GO:0005819. The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.	www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad RNA_BINDING	View Gene Set	2.396e-15	236	9.49e-13	1	Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof.	www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING	View Gene Set	1.732e-09	39	3.43e-07	2	Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome.	www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY	View Gene Set	1.733e-08	41	2.287e-06	3	Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome.	www.broad.mit.e...
Broad TRANSLATION_INITIATION_FACTOR_ACTIVITY	View Gene Set	9.572e-08	24	9.476e-06	4	Genes annotated by the GO term GO:0003743. Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.	www.broad.mit.e...
Broad LIGASE_ACTIVITY	View Gene Set	6.077e-07	97	4.813e-05	5	Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6.	www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_OXYGEN_BONDS	View Gene Set	1.008e-06	14	5.021e-05	6	Genes annotated by the GO term GO:0016875. Catalysis of the ligation of two substances via a carbon-oxygen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate.	www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING	View Gene Set	1.014e-06	55	5.021e-05	6	Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding.	www.broad.mit.e...
Broad DNA_BINDING	View Gene Set	8.24e-07	587	5.021e-05	6	Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid).	www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING	View Gene Set	1.075e-05	34	0.0004728	9	Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA.	www.broad.mit.e...
Broad NUCLEOTIDYLTRANSFERASE_ACTIVITY	View Gene Set	1.928e-05	47	0.0007636	10	Genes annotated by the GO term GO:0016779. Catalysis of the transfer of a nucleotidyl group to a reactant.	www.broad.mit.e...
Broad HELICASE_ACTIVITY	View Gene Set	3.278e-05	49	0.00118	11	Genes annotated by the GO term GO:0004386. Catalysis of the unwinding of a DNA or RNA duplex.	www.broad.mit.e...
Broad RNA_POLYMERASE_ACTIVITY	View Gene Set	3.696e-05	16	0.00122	12	Genes annotated by the GO term GO:0034062. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template.	www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING	View Gene Set	4.247e-05	32	0.001294	13	Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA.	www.broad.mit.e...
Broad ATP_DEPENDENT_HELICASE_ACTIVITY	View Gene Set	5.897e-05	26	0.001668	14	Genes annotated by the GO term GO:0008026. Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix.	www.broad.mit.e...
Broad METHYLTRANSFERASE_ACTIVITY	View Gene Set	0.0001273	36	0.003362	15	Genes annotated by the GO term GO:0008168. Catalysis of the transfer of a methyl group to an acceptor molecule.	www.broad.mit.e...
Broad ATP_DEPENDENT_RNA_HELICASE_ACTIVITY	View Gene Set	0.000141	17	0.003489	16	Genes annotated by the GO term GO:0004004. Catalysis of the reaction: ATP + H2O = ADP + phosphate driving the unwinding of an RNA helix.	www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_ONE_CARBON_GROUPS	View Gene Set	0.000169	37	0.003937	17	Genes annotated by the GO term GO:0016741. Catalysis of the transfer of a one-carbon group from one compound (donor) to another (acceptor).	www.broad.mit.e...
Broad RNA_HELICASE_ACTIVITY	View Gene Set	0.000241	24	0.004803	18	Genes annotated by the GO term GO:0003724. Catalysis of the unwinding of an RNA helix.	www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS	View Gene Set	0.0002193	68	0.004803	18	Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate.	www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM	View Gene Set	0.0002426	14	0.004803	18	Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced.	www.broad.mit.e...
Broad MRNA_BINDING	View Gene Set	0.0002565	22	0.004837	21	Genes annotated by the GO term GO:0003729. Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA).	www.broad.mit.e...
Broad HISTONE_ACETYLTRANSFERASE_ACTIVITY	View Gene Set	0.000291	16	0.00501	22	Genes annotated by the GO term GO:0004402. Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.	www.broad.mit.e...
Broad RNA_DEPENDENT_ATPASE_ACTIVITY	View Gene Set	0.0002807	18	0.00501	22	Genes annotated by the GO term GO:0008186. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of RNA; drives another reaction.	www.broad.mit.e...
Broad HYDROLASE_ACTIVITY_HYDROLYZING_N_GLYCOSYL_COMPOUNDS	View Gene Set	0.000512	10	0.008214	24	Genes annotated by the GO term GO:0016799. Catalysis of the hydrolysis of any N-glycosyl bond.	www.broad.mit.e...
Broad CHROMATIN_BINDING	View Gene Set	0.0005185	32	0.008214	24	Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase.	www.broad.mit.e...
Broad ATPASE_ACTIVITY	View Gene Set	0.0009349	109	0.01424	26	Genes annotated by the GO term GO:0016887. Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction.	www.broad.mit.e...
Broad RIBONUCLEASE_ACTIVITY	View Gene Set	0.001257	25	0.01844	27	Genes annotated by the GO term GO:0004540. Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.	www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_ACYL_GROUPS	View Gene Set	0.001434	56	0.01958	28	Genes annotated by the GO term GO:0016746. Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).	www.broad.mit.e...
Broad HORMONE_RECEPTOR_BINDING	View Gene Set	0.001395	29	0.01958	28	Genes annotated by the GO term GO:0051427. Interacting selectively with a receptor for hormones.	www.broad.mit.e...
Broad UNFOLDED_PROTEIN_BINDING	View Gene Set	0.002085	41	0.02753	30	Genes annotated by the GO term GO:0051082. Interacting selectively with an unfolded protein.	www.broad.mit.e...
Broad NUCLEAR_HORMONE_RECEPTOR_BINDING	View Gene Set	0.002486	28	0.03175	31	Genes annotated by the GO term GO:0035257. Interacting selectively with a nuclear hormone receptor a ligand-dependent receptor found in the nucleus of the cell.	www.broad.mit.e...
Broad ACID_AMINO_ACID_LIGASE_ACTIVITY	View Gene Set	0.002803	57	0.03468	32	Genes annotated by the GO term GO:0016881. Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate.	www.broad.mit.e...
Broad ACETYLTRANSFERASE_ACTIVITY	View Gene Set	0.003074	23	0.03689	33	Genes annotated by the GO term GO:0016407. Catalysis of the transfer of an acetyl group to an acceptor molecule.	www.broad.mit.e...
Broad STEROID_HORMONE_RECEPTOR_BINDING	View Gene Set	0.003408	10	0.03878	34	Genes annotated by the GO term GO:0035258. Interacting selectively with a steroid hormone receptor.	www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_PENTOSYL_GROUPS	View Gene Set	0.003507	19	0.03878	34	Genes annotated by the GO term GO:0016763. Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).	www.broad.mit.e...
Broad ENDONUCLEASE_ACTIVITY_GO_0016893	View Gene Set	0.003525	11	0.03878	34	Genes annotated by the GO term GO:0016893. Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks to yield 5'-phosphomonoesters.	www.broad.mit.e...
Broad DNA_POLYMERASE_ACTIVITY	View Gene Set	0.004051	18	0.04335	37	Genes annotated by the GO term GO:0034061. Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a nucleic acid template and primer.	www.broad.mit.e...
Broad DAMAGED_DNA_BINDING	View Gene Set	0.004794	21	0.04995	38	Genes annotated by the GO term GO:0003684. Interacting selectively with damaged DNA.	www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
PMID 15635413	View Gene Set	3.744e-53	421	9.386e-50	1	Nucleolar proteome dynamics.	www.ncbi.nlm.ni...
PMID 15302935	View Gene Set	1.413e-37	773	1.771e-34	2	Large-scale characterization of HeLa cell nuclear phosphoproteins.	www.ncbi.nlm.ni...
PMID 17643375	View Gene Set	1.963e-35	391	1.64e-32	3	Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.	www.ncbi.nlm.ni...
PMID 12429849	View Gene Set	4.086e-34	106	2.561e-31	4	Functional proteomic analysis of human nucleolus.	www.ncbi.nlm.ni...
PMID 11790298	View Gene Set	2.499e-31	208	1.253e-28	5	Directed proteomic analysis of the human nucleolus.	www.ncbi.nlm.ni...
PMID 12226669	View Gene Set	1.8e-26	108	7.521e-24	6	Comprehensive proteomic analysis of the human spliceosome.	www.ncbi.nlm.ni...
PMID 12706105	View Gene Set	2.073e-23	182	7.424e-21	7	Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome.	www.ncbi.nlm.ni...
PMID 16565220	View Gene Set	3.043e-20	210	9.537e-18	8	Phosphoproteome analysis of the human mitotic spindle.	www.ncbi.nlm.ni...
PMID 16964243	View Gene Set	8.41e-20	504	2.343e-17	9	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	www.ncbi.nlm.ni...
PMID 11991638	View Gene Set	8.081e-19	74	2.026e-16	10	Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.	www.ncbi.nlm.ni...
PMID 11543634	View Gene Set	1.085e-17	58	2.473e-15	11	The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders.	www.ncbi.nlm.ni...
PMID 14559993	View Gene Set	2.869e-16	51	5.995e-14	12	Regulation of alternative splicing by SRrp86 and its interacting proteins.	www.ncbi.nlm.ni...
PMID 20085707	View Gene Set	3.428e-15	42	6.61e-13	13	Aire's partners in the molecular control of immunological tolerance.	www.ncbi.nlm.ni...
PMID 11080476	View Gene Set	9.691e-13	87	1.735e-10	14	Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones.	www.ncbi.nlm.ni...
PMID 15231747	View Gene Set	1.936e-12	212	3.236e-10	15	A protein interaction framework for human mRNA degradation.	www.ncbi.nlm.ni...
PMID 17148452	View Gene Set	1.823e-11	87	2.856e-09	16	Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2.	www.ncbi.nlm.ni...
PMID 11279123	View Gene Set	3.056e-11	31	4.506e-09	17	The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present.	www.ncbi.nlm.ni...
PMID 14657027	View Gene Set	5.179e-11	74	7.213e-09	18	Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter.	www.ncbi.nlm.ni...
PMID 11689053	View Gene Set	5.759e-11	70	7.599e-09	19	Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA.	www.ncbi.nlm.ni...
PMID 12228227	View Gene Set	4.433e-10	30	5.44e-08	20	Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1.	www.ncbi.nlm.ni...
PMID 12408966	View Gene Set	4.638e-10	76	5.44e-08	20	The human and mouse replication-dependent histone genes.	www.ncbi.nlm.ni...
PMID 15782174	View Gene Set	4.774e-10	31	5.44e-08	20	Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.	www.ncbi.nlm.ni...
PMID 18162579	View Gene Set	5.553e-10	22	6.053e-08	23	Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1.	www.ncbi.nlm.ni...
PMID 9439656	View Gene Set	1.028e-09	55	1.031e-07	24	The human histone gene cluster at the D6S105 locus.	www.ncbi.nlm.ni...
PMID 9566873	View Gene Set	1.02e-09	74	1.031e-07	24	Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter.	www.ncbi.nlm.ni...
PMID 15130578	View Gene Set	6.352e-09	22	6.124e-07	26	Why do cells need an assembly machine for RNA-protein complexes?	www.ncbi.nlm.ni...
PMID 12171929	View Gene Set	1.169e-08	31	1.085e-06	27	A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein.	www.ncbi.nlm.ni...
PMID 11551941	View Gene Set	2.691e-08	26	2.41e-06	28	The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present.	www.ncbi.nlm.ni...
PMID 18063578	View Gene Set	6.705e-08	31	5.797e-06	29	The layered structure of human mitochondrial DNA nucleoids.	www.ncbi.nlm.ni...
PMID 10601273	View Gene Set	1.413e-07	21	1.181e-05	30	Nuclear import of hepatic glucokinase depends upon glucokinase regulatory protein whereas export is due to a nuclear export signal sequence in glucokinase.	www.ncbi.nlm.ni...
PMID 12234937	View Gene Set	1.509e-07	34	1.182e-05	31	Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein.	www.ncbi.nlm.ni...
PMID 9731529	View Gene Set	1.475e-07	24	1.182e-05	31	Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.	www.ncbi.nlm.ni...
PMID 15029244	View Gene Set	1.698e-07	57	1.29e-05	33	Mammalian Cdh1/Fzr mediates its own degradation.	www.ncbi.nlm.ni...
PMID 11285280	View Gene Set	2.461e-07	62	1.814e-05	34	Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint.	www.ncbi.nlm.ni...
PMID 10531003	View Gene Set	2.904e-07	15	2.08e-05	35	Newly assembled snRNPs associate with coiled bodies before speckles suggesting a nuclear snRNP maturation pathway.	www.ncbi.nlm.ni...
PMID 17289661	View Gene Set	1.008e-06	35	7.017e-05	36	Molecular composition of IMP1 ribonucleoprotein granules.	www.ncbi.nlm.ni...
PMID 12167863	View Gene Set	1.676e-06	43	8.403e-05	37	Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein.	www.ncbi.nlm.ni...
PMID 12388589	View Gene Set	1.578e-06	17	8.403e-05	37	A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons.	www.ncbi.nlm.ni...
PMID 12808465	View Gene Set	1.676e-06	43	8.403e-05	37	The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA.	www.ncbi.nlm.ni...
PMID 12808466	View Gene Set	1.676e-06	43	8.403e-05	37	Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts.	www.ncbi.nlm.ni...
PMID 12809610	View Gene Set	1.676e-06	43	8.403e-05	37	DNA deamination mediates innate immunity to retroviral infection.	www.ncbi.nlm.ni...
PMID 12859895	View Gene Set	1.673e-06	47	8.403e-05	37	Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif.	www.ncbi.nlm.ni...
PMID 12970355	View Gene Set	1.676e-06	43	8.403e-05	37	The enzymatic activity of CEM15/Apobec-3G is essential for the regulation of the infectivity of HIV-1 virion but not a sole determinant of its antiviral activity.	www.ncbi.nlm.ni...
PMID 14527406	View Gene Set	1.676e-06	43	8.403e-05	37	HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability.	www.ncbi.nlm.ni...
PMID 14528300	View Gene Set	1.676e-06	43	8.403e-05	37	The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif.	www.ncbi.nlm.ni...
PMID 14528301	View Gene Set	1.676e-06	43	8.403e-05	37	HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation.	www.ncbi.nlm.ni...
PMID 14557625	View Gene Set	1.676e-06	43	8.403e-05	37	The human immunodeficiency virus type 1 Vif protein reduces intracellular expression and inhibits packaging of APOBEC3G (CEM15) a cellular inhibitor of virus infectivity.	www.ncbi.nlm.ni...
PMID 17363900	View Gene Set	1.319e-06	14	8.403e-05	37	The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions.	www.ncbi.nlm.ni...
PMID 19710015	View Gene Set	1.364e-06	48	8.403e-05	37	The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor.	www.ncbi.nlm.ni...
PMID 9119399	View Gene Set	1.264e-06	35	8.403e-05	37	Human histone gene organization: nonregular arrangement within a large cluster.	www.ncbi.nlm.ni...
PMID 19237606	View Gene Set	2.304e-06	84	0.0001111	51	Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk.	www.ncbi.nlm.ni...
PMID 20496165	View Gene Set	2.279e-06	68	0.0001111	51	Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk.	www.ncbi.nlm.ni...
PMID 15146077	View Gene Set	2.414e-06	32	0.0001142	53	The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome.	www.ncbi.nlm.ni...
PMID 14743216	View Gene Set	2.464e-06	132	0.0001144	54	A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway.	www.ncbi.nlm.ni...
PMID 11076961	View Gene Set	2.565e-06	14	0.0001169	55	Characterization of vertebrate cohesin complexes and their regulation in prophase.	www.ncbi.nlm.ni...
PMID 11101529	View Gene Set	2.76e-06	34	0.0001235	56	Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry.	www.ncbi.nlm.ni...
PMID 10893419	View Gene Set	3.687e-06	41	0.0001271	57	Degradation of HIV-1 integrase by the N-end rule pathway.	www.ncbi.nlm.ni...
PMID 11714285	View Gene Set	3.854e-06	11	0.0001271	57	The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function.	www.ncbi.nlm.ni...
PMID 12419264	View Gene Set	3.687e-06	41	0.0001271	57	The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing.	www.ncbi.nlm.ni...
PMID 12719574	View Gene Set	3.617e-06	42	0.0001271	57	Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions.	www.ncbi.nlm.ni...
PMID 12750511	View Gene Set	3.617e-06	42	0.0001271	57	Hypermutation of HIV-1 DNA in the absence of the Vif protein.	www.ncbi.nlm.ni...
PMID 12830140	View Gene Set	3.617e-06	42	0.0001271	57	DNA deamination: not just a trigger for antibody diversification but also a mechanism for defense against retroviruses.	www.ncbi.nlm.ni...
PMID 12840737	View Gene Set	3.617e-06	42	0.0001271	57	Good to CU.	www.ncbi.nlm.ni...
PMID 12914693	View Gene Set	3.617e-06	42	0.0001271	57	Death by deamination: a novel host restriction system for HIV-1.	www.ncbi.nlm.ni...
PMID 12920286	View Gene Set	3.617e-06	42	0.0001271	57	Virology. Weapons of mutational destruction.	www.ncbi.nlm.ni...
PMID 14550573	View Gene Set	3.687e-06	41	0.0001271	57	Human immunodeficiency virus-1 Tat protein interacts with distinct proteasomal alpha and beta subunits.	www.ncbi.nlm.ni...
PMID 14614829	View Gene Set	3.617e-06	42	0.0001271	57	The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G.	www.ncbi.nlm.ni...
PMID 16055448	View Gene Set	3.854e-06	11	0.0001271	57	The C-terminal appended domain of human cytosolic leucyl-tRNA synthetase is indispensable in its interaction with arginyl-tRNA synthetase in the multi-tRNA synthetase complex.	www.ncbi.nlm.ni...
PMID 8052601	View Gene Set	3.854e-06	11	0.0001271	57	Human cytoplasmic isoleucyl-tRNA synthetase: selective divergence of the anticodon-binding domain and acquisition of a new structural unit.	www.ncbi.nlm.ni...
PMID 8078941	View Gene Set	3.854e-06	11	0.0001271	57	Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer.	www.ncbi.nlm.ni...
PMID 8188258	View Gene Set	3.854e-06	11	0.0001271	57	The human EPRS locus (formerly the QARS locus): a gene encoding a class I and a class II aminoacyl-tRNA synthetase.	www.ncbi.nlm.ni...
PMID 8449960	View Gene Set	3.854e-06	11	0.0001271	57	Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix.	www.ncbi.nlm.ni...
PMID 9079628	View Gene Set	3.687e-06	41	0.0001271	57	HIV-1 tat inhibits the 20 S proteasome and its 11 S regulator-mediated activation.	www.ncbi.nlm.ni...
PMID 9278442	View Gene Set	3.854e-06	11	0.0001271	57	Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant.	www.ncbi.nlm.ni...
PMID 9811770	View Gene Set	3.617e-06	42	0.0001271	57	An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein.	www.ncbi.nlm.ni...
PMID 9846577	View Gene Set	3.617e-06	42	0.0001271	57	Evidence for a newly discovered cellular anti-HIV-1 phenotype.	www.ncbi.nlm.ni...
PMID 11714716	View Gene Set	5.069e-06	13	0.000165	77	Gemin5 a novel WD repeat protein component of the SMN complex that binds Sm proteins.	www.ncbi.nlm.ni...
PMID 12791985	View Gene Set	5.161e-06	37	0.0001659	78	Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes.	www.ncbi.nlm.ni...
PMID 10064132	View Gene Set	5.613e-06	14	0.0001781	79	The human H2A and H2B histone gene complement.	www.ncbi.nlm.ni...
PMID 11829477	View Gene Set	5.758e-06	13	0.0001805	80	Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex.	www.ncbi.nlm.ni...
PMID 14564014	View Gene Set	6.005e-06	47	0.0001836	81	Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex.	www.ncbi.nlm.ni...
PMID 19270065	View Gene Set	5.938e-06	11	0.0001836	81	MRE11 complex links RECQ5 helicase to sites of DNA damage.	www.ncbi.nlm.ni...
PMID 16236267	View Gene Set	6.23e-06	77	0.0001882	83	Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress.	www.ncbi.nlm.ni...
PMID 15960975	View Gene Set	6.655e-06	28	0.0001986	84	Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF.	www.ncbi.nlm.ni...
PMID 12791267	View Gene Set	7.117e-06	50	0.0002099	85	Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase.	www.ncbi.nlm.ni...
PMID 11748230	View Gene Set	8.001e-06	17	0.0002332	86	Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component.	www.ncbi.nlm.ni...
PMID 12614612	View Gene Set	1.006e-05	19	0.0002899	87	Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells.	www.ncbi.nlm.ni...
PMID 11877377	View Gene Set	1.198e-05	11	0.0003414	88	SMC1 is a downstream effector in the ATM/NBS1 branch of the human S-phase checkpoint.	www.ncbi.nlm.ni...
PMID 7273846	View Gene Set	1.225e-05	12	0.000345	89	The glucose-lactic acid cycle and gluconeogenesis.	www.ncbi.nlm.ni...
PMID 11402041	View Gene Set	1.268e-05	16	0.0003533	90	Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit.	www.ncbi.nlm.ni...
PMID 15592455	View Gene Set	1.307e-05	317	0.0003602	91	Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.	www.ncbi.nlm.ni...
PMID 8811196	View Gene Set	1.48e-05	37	0.0004032	92	Structure and functions of the 20S and 26S proteasomes.	www.ncbi.nlm.ni...
PMID 10783165	View Gene Set	1.652e-05	12	0.0004453	93	BASC a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures.	www.ncbi.nlm.ni...
PMID 20516191	View Gene Set	1.83e-05	12	0.0004881	94	A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins).	www.ncbi.nlm.ni...
PMID 15196461	View Gene Set	2.095e-05	11	0.0005528	95	The highly conserved and multifunctional NuA4 HAT complex.	www.ncbi.nlm.ni...
PMID 15707391	View Gene Set	2.371e-05	23	0.0006191	96	DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system.	www.ncbi.nlm.ni...
PMID 10601333	View Gene Set	2.508e-05	12	0.0006483	97	Gemin3: A novel DEAD box protein that interacts with SMN the spinal muscular atrophy gene product and is a component of gems.	www.ncbi.nlm.ni...
PMID 16916647	View Gene Set	2.903e-05	76	0.0007425	98	Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.	www.ncbi.nlm.ni...
PMID 12588972	View Gene Set	3.055e-05	56	0.0007735	99	Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region.	www.ncbi.nlm.ni...
PMID 11279069	View Gene Set	3.242e-05	15	0.0008048	100	Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria.	www.ncbi.nlm.ni...
PMID 12045100	View Gene Set	3.262e-05	18	0.0008048	100	DNA replication in eukaryotic cells.	www.ncbi.nlm.ni...
PMID 18954305	View Gene Set	3.274e-05	13	0.0008048	100	Structural basis and specificity of human otubain 1-mediated deubiquitination.	www.ncbi.nlm.ni...
PMID 8724849	View Gene Set	3.648e-05	41	0.0008879	103	Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1.	www.ncbi.nlm.ni...
PMID 14667819	View Gene Set	4.165e-05	112	0.001004	104	Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region.	www.ncbi.nlm.ni...
PMID 17456004	View Gene Set	4.356e-05	17	0.00104	105	Selective translational repression of truncated proteins from frameshift mutation-derived mRNAs in tumors.	www.ncbi.nlm.ni...
PMID 12393188	View Gene Set	5.548e-05	15	0.001312	106	Ku antigen an origin-specific binding protein that associates with replication proteins is required for mammalian DNA replication.	www.ncbi.nlm.ni...
PMID 11713266	View Gene Set	6.147e-05	12	0.00144	107	The methylosome a 20S complex containing JBP1 and pICln produces dimethylarginine-modified Sm proteins.	www.ncbi.nlm.ni...
PMID 15647280	View Gene Set	6.251e-05	17	0.001451	108	The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes.	www.ncbi.nlm.ni...
PMID 10725331	View Gene Set	6.814e-05	14	0.001567	109	Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli.	www.ncbi.nlm.ni...
PMID 11095689	View Gene Set	7.248e-05	17	0.001652	110	The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase.	www.ncbi.nlm.ni...
PMID 12391170	View Gene Set	7.451e-05	18	0.001683	111	Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits.	www.ncbi.nlm.ni...
PMID 16319397	View Gene Set	8.555e-05	20	0.001915	112	Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry.	www.ncbi.nlm.ni...
PMID 14966270	View Gene Set	9.034e-05	19	0.001969	113	Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans.	www.ncbi.nlm.ni...
PMID 15146057	View Gene Set	8.979e-05	10	0.001969	113	The entire Nup107-160 complex including three new members is targeted as one entity to kinetochores in mitosis.	www.ncbi.nlm.ni...
PMID 19596235	View Gene Set	8.9e-05	85	0.001969	113	Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair.	www.ncbi.nlm.ni...
PMID 12837248	View Gene Set	9.124e-05	22	0.001972	116	The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome.	www.ncbi.nlm.ni...
PMID 20226869	View Gene Set	9.34e-05	25	0.002001	117	Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations.	www.ncbi.nlm.ni...
PMID 16713563	View Gene Set	0.0001029	19	0.002186	118	Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.	www.ncbi.nlm.ni...
PMID 8590280	View Gene Set	0.0001052	41	0.002216	119	Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1.	www.ncbi.nlm.ni...
PMID 1574589	View Gene Set	0.0001184	11	0.002473	120	De novo purine nucleotide biosynthesis.	www.ncbi.nlm.ni...
PMID 15504738	View Gene Set	0.0001224	19	0.002537	121	Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling.	www.ncbi.nlm.ni...
PMID 12628926	View Gene Set	0.0001353	15	0.002773	122	Purification and functional characterization of the human N-CoR complex: the roles of HDAC3 TBL1 and TBLR1.	www.ncbi.nlm.ni...
PMID 15226314	View Gene Set	0.000136	20	0.002773	122	Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures.	www.ncbi.nlm.ni...
PMID 11719186	View Gene Set	0.0001403	17	0.002837	124	AU binding proteins recruit the exosome to degrade ARE-containing mRNAs.	www.ncbi.nlm.ni...
PMID 17577209	View Gene Set	0.0001447	28	0.002901	125	The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing.	www.ncbi.nlm.ni...
PMID 12611891	View Gene Set	0.000153	40	0.003044	126	The subunit composition of the human NADH dehydrogenase obtained by rapid one-step immunopurification.	www.ncbi.nlm.ni...
PMID 15461802	View Gene Set	0.000168	293	0.003316	127	A genome annotation-driven approach to cloning the human ORFeome.	www.ncbi.nlm.ni...
PMID 11060040	View Gene Set	0.0001867	15	0.003647	128	Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors.	www.ncbi.nlm.ni...
PMID 12065586	View Gene Set	0.0001877	14	0.003647	128	Identification and characterization of Gemin7 a novel component of the survival of motor neuron complex.	www.ncbi.nlm.ni...
PMID 16283522	View Gene Set	0.0001935	18	0.003732	130	Inhibition of core histones acetylation by carcinogenic nickel(II).	www.ncbi.nlm.ni...
PMID 10608806	View Gene Set	0.0001995	25	0.003819	131	Substrate specificities and identification of putative substrates of ATM kinase family members.	www.ncbi.nlm.ni...
PMID 17220478	View Gene Set	0.0002018	63	0.003832	132	Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells.	www.ncbi.nlm.ni...
PMID 20522537	View Gene Set	0.0002084	73	0.003927	133	Variation within DNA repair pathway genes and risk of multiple sclerosis.	www.ncbi.nlm.ni...
PMID 16387653	View Gene Set	0.0002287	42	0.004278	134	ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.	www.ncbi.nlm.ni...
PMID 15823041	View Gene Set	0.0002416	13	0.004487	135	Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes.	www.ncbi.nlm.ni...
PMID 15644312	View Gene Set	0.0002548	10	0.004697	136	Dissection of the mitochondrial import and assembly pathway for human Tom40.	www.ncbi.nlm.ni...
PMID 12930902	View Gene Set	0.0002656	11	0.004825	137	The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA.	www.ncbi.nlm.ni...
PMID 14527413	View Gene Set	0.0002637	12	0.004825	137	Nonsense-mediated mRNA decay in mammalian cells involves decapping deadenylating and exonucleolytic activities.	www.ncbi.nlm.ni...
PMID 9878398	View Gene Set	0.000271	13	0.004888	139	Macromolecular assemblage of aminoacyl-tRNA synthetases: identification of protein-protein interactions and characterization of a core protein.	www.ncbi.nlm.ni...
PMID 1403646	View Gene Set	0.000298	17	0.005336	140	The human immunodeficiency virus tat protein increases the transcription of human Alu repeated sequences by increasing the activity of the cellular transcription factor TFIIIC.	www.ncbi.nlm.ni...
PMID 9878551	View Gene Set	0.0003087	34	0.005489	141	cDNA of eight nuclear encoded subunits of NADH:ubiquinone oxidoreductase: human complex I cDNA characterization completed.	www.ncbi.nlm.ni...
PMID 11812149	View Gene Set	0.000312	13	0.005509	142	Protein-protein interactions of hCsl4p with other human exosome subunits.	www.ncbi.nlm.ni...
PMID 15779907	View Gene Set	0.0003225	12	0.005653	143	Toward the full set of human mitochondrial aminoacyl-tRNA synthetases: characterization of AspRS and TyrRS.	www.ncbi.nlm.ni...
PMID 9763677	View Gene Set	0.0003383	15	0.00589	144	Intron based radiation hybrid mapping of 15 complex I genes of the human electron transport chain.	www.ncbi.nlm.ni...
PMID 20508983	View Gene Set	0.0003432	102	0.005933	145	Centrosome-related genes genetic variation and risk of breast cancer.	www.ncbi.nlm.ni...
PMID 18377426	View Gene Set	0.0003475	20	0.005968	146	Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex.	www.ncbi.nlm.ni...
PMID 19209188	View Gene Set	0.0003548	13	0.006051	147	Genetic association analysis of 13 nuclear-encoded mitochondrial candidate genes with type II diabetes mellitus: the DAMAGE study.	www.ncbi.nlm.ni...
PMID 16307923	View Gene Set	0.0003873	23	0.00656	148	Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.	www.ncbi.nlm.ni...
PMID 12757711	View Gene Set	0.0004189	18	0.007048	149	Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase.	www.ncbi.nlm.ni...
PMID 10436018	View Gene Set	0.0004324	15	0.007221	150	The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells.	www.ncbi.nlm.ni...
PMID 12419256	View Gene Set	0.0004349	12	0.007221	150	Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring.	www.ncbi.nlm.ni...
PMID 19064571	View Gene Set	0.0004415	75	0.007281	152	Polymorphisms in mitochondrial genes and prostate cancer risk.	www.ncbi.nlm.ni...
PMID 9472028	View Gene Set	0.0004492	12	0.00736	153	SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.	www.ncbi.nlm.ni...
PMID 10373521	View Gene Set	0.0004569	13	0.007438	154	Transcriptional cofactor CA150 regulates RNA polymerase II elongation in a TATA-box-dependent manner.	www.ncbi.nlm.ni...
PMID 10725406	View Gene Set	0.000477	13	0.007714	155	BRCA1 interaction with RNA polymerase II reveals a role for hRPB2 and hRPB10alpha in activated transcription.	www.ncbi.nlm.ni...
PMID 7638159	View Gene Set	0.000494	13	0.007939	156	Specific binding of RNA polymerase II to the human immunodeficiency virus trans-activating region RNA is regulated by cellular cofactors and Tat.	www.ncbi.nlm.ni...
PMID 10851237	View Gene Set	0.0005007	11	0.007995	157	Specific sequences of the Sm and Sm-like (Lsm) proteins mediate their interaction with the spinal muscular atrophy disease gene product (SMN).	www.ncbi.nlm.ni...
PMID 15010469	View Gene Set	0.0005231	15	0.0083	158	Phosphorylation of histone H2A inhibits transcription on chromatin templates.	www.ncbi.nlm.ni...
PMID 11310559	View Gene Set	0.0005474	17	0.008631	159	Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha.	www.ncbi.nlm.ni...
PMID 15078818	View Gene Set	0.0005987	11	0.009322	160	Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo.	www.ncbi.nlm.ni...
PMID 16702407	View Gene Set	0.0005987	11	0.009322	160	DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A.	www.ncbi.nlm.ni...
PMID 12221105	View Gene Set	0.0006109	16	0.009396	162	Transcriptional activators differ in their abilities to control alternative splicing.	www.ncbi.nlm.ni...
PMID 14519125	View Gene Set	0.0006088	12	0.009396	162	Characterization of eIF3k: a newly discovered subunit of mammalian translation initiation factor elF3.	www.ncbi.nlm.ni...
PMID 15009096	View Gene Set	0.0006609	39	0.0101	164	Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase.	www.ncbi.nlm.ni...
PMID 17158748	View Gene Set	0.0006896	13	0.01042	165	The histone variant mH2A1.1 interferes with transcription by down-regulating PARP-1 enzymatic activity.	www.ncbi.nlm.ni...
PMID 18809582	View Gene Set	0.0006876	25	0.01042	165	Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome.	www.ncbi.nlm.ni...
PMID 17203305	View Gene Set	0.0007256	12	0.01089	167	Genetic variation in the base excision repair pathway and bladder cancer risk.	www.ncbi.nlm.ni...
PMID 11205743	View Gene Set	0.0007314	15	0.01091	168	Polo-like kinase interacts with proteasomes and regulates their activity.	www.ncbi.nlm.ni...
PMID 11914277	View Gene Set	0.0007487	38	0.01104	169	miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.	www.ncbi.nlm.ni...
PMID 15456888	View Gene Set	0.000747	24	0.01104	169	The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo.	www.ncbi.nlm.ni...
PMID 10318877	View Gene Set	0.0007641	10	0.0112	171	Characterization of the DOC1/APC10 subunit of the yeast and the human anaphase-promoting complex.	www.ncbi.nlm.ni...
PMID 9822659	View Gene Set	0.0007724	11	0.01126	172	Characterization of cDNAs encoding the p44 and p35 subunits of human translation initiation factor eIF3.	www.ncbi.nlm.ni...
PMID 12732143	View Gene Set	0.0007921	14	0.01141	173	The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage.	www.ncbi.nlm.ni...
PMID 18270339	View Gene Set	0.000792	57	0.01141	173	Comprehensive analysis of DNA repair gene variants and risk of meningioma.	www.ncbi.nlm.ni...
PMID 9111189	View Gene Set	0.0008076	16	0.01157	175	Which DNA polymerases are used for DNA-repair in eukaryotes?	www.ncbi.nlm.ni...
PMID 11110791	View Gene Set	0.0008431	12	0.01201	176	Three novel components of the human exosome.	www.ncbi.nlm.ni...
PMID 15232106	View Gene Set	0.0008519	30	0.01207	177	Self-assembling protein microarrays.	www.ncbi.nlm.ni...
PMID 16239144	View Gene Set	0.0009157	16	0.01287	178	Integrator a multiprotein mediator of small nuclear RNA processing associates with the C-terminal repeat of RNA polymerase II.	www.ncbi.nlm.ni...
PMID 16627869	View Gene Set	0.0009186	17	0.01287	178	Quantitative proteomic analysis of post-translational modifications of human histones.	www.ncbi.nlm.ni...
PMID 1916825	View Gene Set	0.001053	13	0.01466	180	Isolation and characterization of two human H1 histone genes within clusters of core histone genes.	www.ncbi.nlm.ni...
PMID 14733938	View Gene Set	0.001192	13	0.01651	181	Protein-protein interactions among human 20S proteasome subunits and proteassemblin.	www.ncbi.nlm.ni...
PMID 14729942	View Gene Set	0.001259	18	0.01734	182	Identification of phosphoproteins and their phosphorylation sites in the WEHI-231 B lymphoma cell line.	www.ncbi.nlm.ni...
PMID 15324660	View Gene Set	0.001323	242	0.01812	183	Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization.	www.ncbi.nlm.ni...
PMID 12788944	View Gene Set	0.001345	11	0.01822	184	The association of the human PM/Scl-75 autoantigen with the exosome is dependent on a newly identified N terminus.	www.ncbi.nlm.ni...
PMID 9150948	View Gene Set	0.001339	15	0.01822	184	A two-dimensional gel database of human colon carcinoma proteins.	www.ncbi.nlm.ni...
PMID 11149922	View Gene Set	0.00138	14	0.01861	186	A functional interaction between the survival motor neuron complex and RNA polymerase II.	www.ncbi.nlm.ni...
PMID 12620389	View Gene Set	0.00141	23	0.0188	187	Novel raf kinase protein-protein interactions found by an exhaustive yeast two-hybrid analysis.	www.ncbi.nlm.ni...
PMID 15616580	View Gene Set	0.001405	13	0.0188	187	Histone modifications defining active genes persist after transcriptional and mitotic inactivation.	www.ncbi.nlm.ni...
PMID 10069959	View Gene Set	0.001577	12	0.02028	189	Human immunodeficiency virus type 1 Tat-dependent activation of an arrested RNA polymerase II elongation complex.	www.ncbi.nlm.ni...
PMID 10983978	View Gene Set	0.001555	10	0.02028	189	Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1.	www.ncbi.nlm.ni...
PMID 12126615	View Gene Set	0.001577	12	0.02028	189	A bimolecular mechanism of HIV-1 Tat protein interaction with RNA polymerase II transcription elongation complexes.	www.ncbi.nlm.ni...
PMID 2190099	View Gene Set	0.001577	12	0.02028	189	Activation of transcription by HIV-1 Tat protein tethered to nascent RNA through another protein.	www.ncbi.nlm.ni...
PMID 8637904	View Gene Set	0.001577	12	0.02028	189	Human immunodeficiency virus type-1 Tat is an integral component of the activated transcription-elongation complex.	www.ncbi.nlm.ni...
PMID 8876177	View Gene Set	0.001577	12	0.02028	189	Trans-activation by human immunodeficiency virus Tat protein requires the C-terminal domain of RNA polymerase II.	www.ncbi.nlm.ni...
PMID 8910388	View Gene Set	0.001577	12	0.02028	189	Requirements for RNA polymerase II carboxyl-terminal domain for activated transcription of human retroviruses human T-cell lymphotropic virus I and HIV-1.	www.ncbi.nlm.ni...
PMID 12634356	View Gene Set	0.00161	15	0.02047	196	Human immunodeficiency virus type 1 (HIV-1) Vpr enhances expression from unintegrated HIV-1 DNA.	www.ncbi.nlm.ni...
PMID 12642036	View Gene Set	0.00161	15	0.02047	196	HIV-1 Vpr binding to HIV-1 LTR C/EBP cis-acting elements and adjacent regions is sequence-specific.	www.ncbi.nlm.ni...
PMID 17478428	View Gene Set	0.001617	10	0.02047	196	A proteomic analysis of ataxia telangiectasia-mutated (ATM)/ATM-Rad3-related (ATR) substrates identifies the ubiquitin-proteasome system as a regulator for DNA damage checkpoints.	www.ncbi.nlm.ni...
PMID 11547919	View Gene Set	0.001639	17	0.02065	199	Multiple modes of transcriptional regulation by the HIV-1 Tat transactivator.	www.ncbi.nlm.ni...
PMID 8995409	View Gene Set	0.001858	11	0.02318	200	Conservation and diversity of eukaryotic translation initiation factor eIF3.	www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null chr3_45-50Mb	View Gene Set	2.395e-05	72	0.02668	1	Genomic tile: chr3 ; 45000001-50000001 Mb	genome.ucsc.edu...
Null chr12_120-125Mb	View Gene Set	9.43e-05	44	0.04886	2	Genomic tile: chr12 ; 120000001-125000001 Mb	genome.ucsc.edu...
Null chr16_85-90Mb	View Gene Set	0.0001316	43	0.04886	2	Genomic tile: chr16 ; 85000001-90000001 Mb	genome.ucsc.edu...
Null chr17_0-5Mb	View Gene Set	0.0001768	65	0.04923	4	Genomic tile: chr17 ; 1-5000001 Mb	genome.ucsc.edu...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null PS50102	View Gene Set	4.99e-21	229	3.668e-18	1	RRM	expasy.org/pros...
Null PS51194	View Gene Set	6.488e-12	113	2.384e-09	2	HELICASE_CTER	expasy.org/pros...
Null PS51192	View Gene Set	2.19e-11	112	5.367e-09	3	HELICASE_ATP_BIND_1	expasy.org/pros...
Null PS51195	View Gene Set	2.528e-09	37	4.645e-07	4	Q_MOTIF	expasy.org/pros...
Null PS50862	View Gene Set	4.032e-07	18	5.927e-05	5	AA_TRNA_LIGASE_II	expasy.org/pros...
Null PS00039	View Gene Set	6.321e-07	27	6.637e-05	6	DEAD_ATP_HELICASE	expasy.org/pros...
Null PS00178	View Gene Set	5.832e-07	15	6.637e-05	6	AA_TRNA_LIGASE_I	expasy.org/pros...
Null PS50082	View Gene Set	2.256e-06	233	0.0002073	8	WD_REPEATS_2	expasy.org/pros...
Null PS00047	View Gene Set	3.924e-06	14	0.0002884	9	HISTONE_H4	expasy.org/pros...
Null PS00678	View Gene Set	3.574e-06	168	0.0002884	9	WD_REPEATS_1	expasy.org/pros...
Null PS50294	View Gene Set	6.255e-06	245	0.0004179	11	WD_REPEATS_REGION	expasy.org/pros...
Null PS00357	View Gene Set	2.371e-05	19	0.001452	12	HISTONE_H2B	expasy.org/pros...
Null PS00674	View Gene Set	2.656e-05	29	0.001502	13	AAA	expasy.org/pros...
Null PS50166	View Gene Set	3.93e-05	13	0.002063	14	IMPORTIN_B_NT	expasy.org/pros...
Null PS00847	View Gene Set	7.45e-05	6	0.00365	15	MCM_1	expasy.org/pros...
Null PS00046	View Gene Set	0.0001566	21	0.006059	16	HISTONE_H2A	expasy.org/pros...
Null PS00750	View Gene Set	0.0001501	9	0.006059	16	TCP1_1	expasy.org/pros...
Null PS00751	View Gene Set	0.0001501	9	0.006059	16	TCP1_2	expasy.org/pros...
Null PS00995	View Gene Set	0.0001501	9	0.006059	16	TCP1_3	expasy.org/pros...
Null PS50051	View Gene Set	0.0002751	8	0.009948	20	MCM_2	expasy.org/pros...
Null PS50812	View Gene Set	0.0002842	22	0.009948	20	PWWP	expasy.org/pros...
Null PS50280	View Gene Set	0.0003155	47	0.01054	22	SET	expasy.org/pros...
Null PS50016	View Gene Set	0.0004104	78	0.01311	23	ZF_PHD_2	expasy.org/pros...
Null PS00469	View Gene Set	0.0004599	6	0.01408	24	NDP_KINASES	expasy.org/pros...
Null PS51189	View Gene Set	0.0008266	9	0.02337	25	FAT	expasy.org/pros...
Null PS51190	View Gene Set	0.0008266	9	0.02337	25	FATC	expasy.org/pros...
Null PS50800	View Gene Set	0.001387	23	0.03775	27	SAP	expasy.org/pros...
Null PS51391	View Gene Set	0.001574	8	0.04131	28	CID	expasy.org/pros...
Null PS51375	View Gene Set	0.001694	7	0.04294	29	PPR	expasy.org/pros...
Null PS01358	View Gene Set	0.001945	25	0.04613	30	ZF_RANBP2_1	expasy.org/pros...
Null PS50199	View Gene Set	0.001945	23	0.04613	30	ZF_RANBP2_2	expasy.org/pros...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null EC:1.6.5.3	View Gene Set	0.0002846	43	0.02347	1	NADH dehydrogenase (ubiquinone)	expasy.org/enzy...
Null EC:1.6.99.3	View Gene Set	0.000315	35	0.02347	1	NADH dehydrogenase	expasy.org/enzy...
Null EC:3.4.25.1	View Gene Set	0.0004457	20	0.02347	1	Proteasome endopeptidase complex	expasy.org/enzy...
Null EC:2.1.1.43	View Gene Set	0.0007569	19	0.02953	4	Histone-lysine N-methyltransferase	expasy.org/enzy...
Null EC:3.6.4.13	View Gene Set	0.0009345	13	0.02953	4	RNA helicase	expasy.org/enzy...
Null EC:2.7.7.6	View Gene Set	0.001546	17	0.0407	6	DNA-directed RNA polymerase	expasy.org/enzy...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.SNORD3A	View Gene Set	0.0001729	9	0.03268	1	Protein-protein-interaction for SNORD3A	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	1.314e-35	236	3.018e-32	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	3.901e-21	147	4.481e-18	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	5.564e-13	64	4.26e-10	3	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	5.637e-10	101	3.237e-07	4	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	4.203e-09	46	1.931e-06	5	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	3.765e-08	38	1.072e-05	6	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	4.049e-08	24	1.072e-05	6	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	4.202e-08	42	1.072e-05	6	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	4.098e-08	37	1.072e-05	6	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.GPN1	View Gene Set	8.089e-08	27	1.858e-05	10	Protein-protein-interaction for GPN1	www.ncbi.nlm.ni...
Null ppi.RPA1	View Gene Set	1.496e-07	23	3.124e-05	11	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.EIF3F	View Gene Set	2.157e-07	22	4.129e-05	12	Protein-protein-interaction for EIF3F	www.ncbi.nlm.ni...
Null ppi.USP42	View Gene Set	2.591e-07	24	4.579e-05	13	Protein-protein-interaction for USP42	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	3.424e-07	50	5.617e-05	14	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.RRP1B	View Gene Set	7.892e-07	21	0.0001208	15	Protein-protein-interaction for RRP1B	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	2.049e-06	35	0.0002942	16	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.RNU12-2P	View Gene Set	3.851e-06	18	0.0004656	17	Protein-protein-interaction for RNU12-2P	www.ncbi.nlm.ni...
Null ppi.RNU11	View Gene Set	3.851e-06	18	0.0004656	17	Protein-protein-interaction for RNU11	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	3.785e-06	28	0.0004656	17	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.UCHL5	View Gene Set	4.269e-06	33	0.0004902	20	Protein-protein-interaction for UCHL5	www.ncbi.nlm.ni...
Null ppi.DDX20	View Gene Set	4.717e-06	17	0.000516	21	Protein-protein-interaction for DDX20	www.ncbi.nlm.ni...
Null ppi.RAD50	View Gene Set	7.387e-06	20	0.0007497	22	Protein-protein-interaction for RAD50	www.ncbi.nlm.ni...
Null ppi.RUVBL2	View Gene Set	7.507e-06	64	0.0007497	22	Protein-protein-interaction for RUVBL2	www.ncbi.nlm.ni...
Null ppi.USP36	View Gene Set	8.643e-06	17	0.0008272	24	Protein-protein-interaction for USP36	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	1.125e-05	15	0.001017	25	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.MED26	View Gene Set	1.151e-05	22	0.001017	25	Protein-protein-interaction for MED26	www.ncbi.nlm.ni...
Null ppi.GIGYF2	View Gene Set	1.31e-05	17	0.001037	27	Protein-protein-interaction for GIGYF2	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	1.298e-05	40	0.001037	27	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.RPAP2	View Gene Set	1.29e-05	43	0.001037	27	Protein-protein-interaction for RPAP2	www.ncbi.nlm.ni...
Null ppi.PSMD13	View Gene Set	1.614e-05	20	0.001236	30	Protein-protein-interaction for PSMD13	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	1.809e-05	15	0.00134	31	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.MRE11A	View Gene Set	1.986e-05	13	0.001425	32	Protein-protein-interaction for MRE11A	www.ncbi.nlm.ni...
Null ppi.TERF2	View Gene Set	2.561e-05	9	0.001782	33	Protein-protein-interaction for TERF2	www.ncbi.nlm.ni...
Null ppi.EIF3H	View Gene Set	2.746e-05	16	0.001855	34	Protein-protein-interaction for EIF3H	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	2.852e-05	12	0.001871	35	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	4.077e-05	14	0.002601	36	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.WWOX	View Gene Set	4.418e-05	19	0.002743	37	Protein-protein-interaction for WWOX	www.ncbi.nlm.ni...
Null ppi.USP39	View Gene Set	6.286e-05	15	0.003767	38	Protein-protein-interaction for USP39	www.ncbi.nlm.ni...
Null ppi.RPAP1	View Gene Set	6.396e-05	24	0.003767	38	Protein-protein-interaction for RPAP1	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	6.696e-05	11	0.003845	40	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.PRMT5	View Gene Set	7.633e-05	31	0.004276	41	Protein-protein-interaction for PRMT5	www.ncbi.nlm.ni...
Null ppi.GIYD2	View Gene Set	8.391e-05	32	0.004589	42	Protein-protein-interaction for GIYD2	www.ncbi.nlm.ni...
Null ppi.GEMIN5	View Gene Set	9.41e-05	11	0.005027	43	Protein-protein-interaction for GEMIN5	www.ncbi.nlm.ni...
Null ppi.UPF2	View Gene Set	9.754e-05	12	0.005092	44	Protein-protein-interaction for UPF2	www.ncbi.nlm.ni...
Null ppi.PDS5A	View Gene Set	0.0001023	6	0.005223	45	Protein-protein-interaction for PDS5A	www.ncbi.nlm.ni...
Null ppi.SNUPN	View Gene Set	0.0001132	10	0.005223	46	Protein-protein-interaction for SNUPN	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.0001106	19	0.005223	46	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.CHTF18	View Gene Set	0.0001144	13	0.005223	46	Protein-protein-interaction for CHTF18	www.ncbi.nlm.ni...
Null ppi.UPF3A	View Gene Set	0.000116	15	0.005223	46	Protein-protein-interaction for UPF3A	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	0.0001121	27	0.005223	46	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.PSMD6	View Gene Set	0.0001096	21	0.005223	46	Protein-protein-interaction for PSMD6	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.0001193	38	0.005272	52	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.POLR1C	View Gene Set	0.0001244	6	0.005392	53	Protein-protein-interaction for POLR1C	www.ncbi.nlm.ni...
Null ppi.ZBTB9	View Gene Set	0.0001286	16	0.005406	54	Protein-protein-interaction for ZBTB9	www.ncbi.nlm.ni...
Null ppi.USP50	View Gene Set	0.0001294	22	0.005406	54	Protein-protein-interaction for USP50	www.ncbi.nlm.ni...
Null ppi.BRF2	View Gene Set	0.0001366	23	0.005602	56	Protein-protein-interaction for BRF2	www.ncbi.nlm.ni...
Null ppi.NAA38	View Gene Set	0.0001523	21	0.006136	57	Protein-protein-interaction for NAA38	www.ncbi.nlm.ni...
Null ppi.PSMD14	View Gene Set	0.0001654	16	0.006473	58	Protein-protein-interaction for PSMD14	www.ncbi.nlm.ni...
Null ppi.RALYL	View Gene Set	0.0001674	12	0.006473	58	Protein-protein-interaction for RALYL	www.ncbi.nlm.ni...
Null ppi.RNMTL1	View Gene Set	0.0001747	8	0.006473	58	Protein-protein-interaction for RNMTL1	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	0.0001744	168	0.006473	58	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.BANF1	View Gene Set	0.0001715	34	0.006473	58	Protein-protein-interaction for BANF1	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0001958	17	0.007029	63	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.MED13	View Gene Set	0.0001943	10	0.007029	63	Protein-protein-interaction for MED13	www.ncbi.nlm.ni...
Null ppi.SAE1	View Gene Set	0.0002014	10	0.007119	65	Protein-protein-interaction for SAE1	www.ncbi.nlm.ni...
Null ppi.ING3	View Gene Set	0.0002112	10	0.00735	66	Protein-protein-interaction for ING3	www.ncbi.nlm.ni...
Null ppi.HSPA8	View Gene Set	0.0002168	21	0.007433	67	Protein-protein-interaction for HSPA8	www.ncbi.nlm.ni...
Null ppi.TOP1	View Gene Set	0.0002259	10	0.007631	68	Protein-protein-interaction for TOP1	www.ncbi.nlm.ni...
Null ppi.NUP153	View Gene Set	0.0002476	11	0.008241	69	Protein-protein-interaction for NUP153	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	0.0002659	53	0.008648	70	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.RPAP3	View Gene Set	0.0002673	29	0.008648	70	Protein-protein-interaction for RPAP3	www.ncbi.nlm.ni...
Null ppi.HNRNPL	View Gene Set	0.0002766	8	0.008704	72	Protein-protein-interaction for HNRNPL	www.ncbi.nlm.ni...
Null ppi.NUP43	View Gene Set	0.0002753	6	0.008704	72	Protein-protein-interaction for NUP43	www.ncbi.nlm.ni...
Null ppi.TTI1	View Gene Set	0.0002868	8	0.008903	74	Protein-protein-interaction for TTI1	www.ncbi.nlm.ni...
Null ppi.PABPC1	View Gene Set	0.0003102	26	0.009254	75	Protein-protein-interaction for PABPC1	www.ncbi.nlm.ni...
Null ppi.PMS2	View Gene Set	0.0003064	14	0.009254	75	Protein-protein-interaction for PMS2	www.ncbi.nlm.ni...
Null ppi.DMAP1	View Gene Set	0.0003118	13	0.009254	75	Protein-protein-interaction for DMAP1	www.ncbi.nlm.ni...
Null ppi.SF3A2	View Gene Set	0.0003143	16	0.009254	75	Protein-protein-interaction for SF3A2	www.ncbi.nlm.ni...
Null ppi.WDR48	View Gene Set	0.0003209	52	0.009331	79	Protein-protein-interaction for WDR48	www.ncbi.nlm.ni...
Null ppi.TAF1D	View Gene Set	0.0003574	21	0.01026	80	Protein-protein-interaction for TAF1D	www.ncbi.nlm.ni...
Null ppi.CDC7	View Gene Set	0.0003685	7	0.01045	81	Protein-protein-interaction for CDC7	www.ncbi.nlm.ni...
Null ppi.NXF1	View Gene Set	0.0003862	9	0.01056	82	Protein-protein-interaction for NXF1	www.ncbi.nlm.ni...
Null ppi.NBN	View Gene Set	0.0003792	13	0.01056	82	Protein-protein-interaction for NBN	www.ncbi.nlm.ni...
Null ppi.AURKA	View Gene Set	0.0003846	9	0.01056	82	Protein-protein-interaction for AURKA	www.ncbi.nlm.ni...
Null ppi.U2AF2	View Gene Set	0.0004115	14	0.01099	85	Protein-protein-interaction for U2AF2	www.ncbi.nlm.ni...
Null ppi.CDC45	View Gene Set	0.0004096	9	0.01099	85	Protein-protein-interaction for CDC45	www.ncbi.nlm.ni...
Null ppi.TP53BP1	View Gene Set	0.0004281	13	0.0113	87	Protein-protein-interaction for TP53BP1	www.ncbi.nlm.ni...
Null ppi.OTUB1	View Gene Set	0.000439	18	0.01133	88	Protein-protein-interaction for OTUB1	www.ncbi.nlm.ni...
Null ppi.MED24	View Gene Set	0.0004354	20	0.01133	88	Protein-protein-interaction for MED24	www.ncbi.nlm.ni...
Null ppi.ZNF496	View Gene Set	0.0004735	13	0.01209	90	Protein-protein-interaction for ZNF496	www.ncbi.nlm.ni...
Null ppi.CTCF	View Gene Set	0.000485	6	0.01224	91	Protein-protein-interaction for CTCF	www.ncbi.nlm.ni...
Null ppi.GAR1	View Gene Set	0.0004912	9	0.01226	92	Protein-protein-interaction for GAR1	www.ncbi.nlm.ni...
Null ppi.SRPK2	View Gene Set	0.0005033	7	0.01243	93	Protein-protein-interaction for SRPK2	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.0005464	10	0.01335	94	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.ORC6L	View Gene Set	0.0005857	11	0.01416	95	Protein-protein-interaction for ORC6L	www.ncbi.nlm.ni...
Null ppi.PRMT1	View Gene Set	0.000595	15	0.01424	96	Protein-protein-interaction for PRMT1	www.ncbi.nlm.ni...
Null ppi.USP14	View Gene Set	0.0006064	22	0.01436	97	Protein-protein-interaction for USP14	www.ncbi.nlm.ni...
Null ppi.DDX24	View Gene Set	0.0006146	20	0.0144	98	Protein-protein-interaction for DDX24	www.ncbi.nlm.ni...
Null ppi.GEMIN6	View Gene Set	0.0006533	7	0.01516	99	Protein-protein-interaction for GEMIN6	www.ncbi.nlm.ni...
Null ppi.MCM6	View Gene Set	0.0006811	6	0.01564	100	Protein-protein-interaction for MCM6	www.ncbi.nlm.ni...
Null ppi.MYC	View Gene Set	0.0006954	42	0.01582	101	Protein-protein-interaction for MYC	www.ncbi.nlm.ni...
Null ppi.COPS8	View Gene Set	0.0007748	8	0.01742	102	Protein-protein-interaction for COPS8	www.ncbi.nlm.ni...
Null ppi.POLR3H	View Gene Set	0.0007812	14	0.01742	102	Protein-protein-interaction for POLR3H	www.ncbi.nlm.ni...
Null ppi.MED23	View Gene Set	0.0007939	14	0.01754	104	Protein-protein-interaction for MED23	www.ncbi.nlm.ni...
Null ppi.TOPORS	View Gene Set	0.000806	27	0.01759	105	Protein-protein-interaction for TOPORS	www.ncbi.nlm.ni...
Null ppi.MED14	View Gene Set	0.0008116	14	0.01759	105	Protein-protein-interaction for MED14	www.ncbi.nlm.ni...
Null ppi.SMAD6	View Gene Set	0.0008196	6	0.01759	107	Protein-protein-interaction for SMAD6	www.ncbi.nlm.ni...
Null ppi.XRN1	View Gene Set	0.0008498	12	0.01791	108	Protein-protein-interaction for XRN1	www.ncbi.nlm.ni...
Null ppi.MED1	View Gene Set	0.0008475	20	0.01791	108	Protein-protein-interaction for MED1	www.ncbi.nlm.ni...
Null ppi.POLR3C	View Gene Set	0.0008601	10	0.01796	110	Protein-protein-interaction for POLR3C	www.ncbi.nlm.ni...
Null ppi.LSM3	View Gene Set	0.0009006	9	0.01864	111	Protein-protein-interaction for LSM3	www.ncbi.nlm.ni...
Null ppi.SIN3A	View Gene Set	0.0009916	104	0.01981	112	Protein-protein-interaction for SIN3A	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.0009745	9	0.01981	112	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.C20orf20	View Gene Set	0.000986	15	0.01981	112	Protein-protein-interaction for C20orf20	www.ncbi.nlm.ni...
Null ppi.USF2	View Gene Set	0.0009817	13	0.01981	112	Protein-protein-interaction for USF2	www.ncbi.nlm.ni...
Null ppi.CLSPN	View Gene Set	0.001023	17	0.02026	116	Protein-protein-interaction for CLSPN	www.ncbi.nlm.ni...
Null ppi.KEAP1	View Gene Set	0.001056	21	0.02072	117	Protein-protein-interaction for KEAP1	www.ncbi.nlm.ni...
Null ppi.ESR2	View Gene Set	0.001081	8	0.02086	118	Protein-protein-interaction for ESR2	www.ncbi.nlm.ni...
Null ppi.EXOSC4	View Gene Set	0.001078	9	0.02086	118	Protein-protein-interaction for EXOSC4	www.ncbi.nlm.ni...
Null ppi.OSBPL10	View Gene Set	0.001094	15	0.02094	120	Protein-protein-interaction for OSBPL10	www.ncbi.nlm.ni...
Null ppi.PCNA	View Gene Set	0.001127	40	0.0214	121	Protein-protein-interaction for PCNA	www.ncbi.nlm.ni...
Null ppi.SUPT16H	View Gene Set	0.001251	11	0.02227	122	Protein-protein-interaction for SUPT16H	www.ncbi.nlm.ni...
Null ppi.HNRNPH1	View Gene Set	0.001247	9	0.02227	122	Protein-protein-interaction for HNRNPH1	www.ncbi.nlm.ni...
Null ppi.MSH2	View Gene Set	0.001219	16	0.02227	122	Protein-protein-interaction for MSH2	www.ncbi.nlm.ni...
Null ppi.COPS4	View Gene Set	0.00121	12	0.02227	122	Protein-protein-interaction for COPS4	www.ncbi.nlm.ni...
Null ppi.POLR2A	View Gene Set	0.001239	25	0.02227	122	Protein-protein-interaction for POLR2A	www.ncbi.nlm.ni...
Null ppi.BRCC3	View Gene Set	0.001212	22	0.02227	122	Protein-protein-interaction for BRCC3	www.ncbi.nlm.ni...
Null ppi.ATRIP	View Gene Set	0.001197	9	0.02227	122	Protein-protein-interaction for ATRIP	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	0.001248	20	0.02227	122	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.PGAM5	View Gene Set	0.001305	13	0.02237	130	Protein-protein-interaction for PGAM5	www.ncbi.nlm.ni...
Null ppi.PSMD10	View Gene Set	0.001298	14	0.02237	130	Protein-protein-interaction for PSMD10	www.ncbi.nlm.ni...
Null ppi.THAP7	View Gene Set	0.001295	12	0.02237	130	Protein-protein-interaction for THAP7	www.ncbi.nlm.ni...
Null ppi.RANBP3	View Gene Set	0.001268	6	0.02237	130	Protein-protein-interaction for RANBP3	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	0.001301	71	0.02237	130	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.SNRPF	View Gene Set	0.001342	6	0.02283	135	Protein-protein-interaction for SNRPF	www.ncbi.nlm.ni...
Null ppi.PSMD7	View Gene Set	0.00137	12	0.02314	136	Protein-protein-interaction for PSMD7	www.ncbi.nlm.ni...
Null ppi.RBM8A	View Gene Set	0.001386	7	0.02324	137	Protein-protein-interaction for RBM8A	www.ncbi.nlm.ni...
Null ppi.POLR1A	View Gene Set	0.001412	11	0.02343	138	Protein-protein-interaction for POLR1A	www.ncbi.nlm.ni...
Null ppi.H2AFY	View Gene Set	0.001418	12	0.02343	138	Protein-protein-interaction for H2AFY	www.ncbi.nlm.ni...
Null ppi.EIF3B	View Gene Set	0.001438	10	0.0236	140	Protein-protein-interaction for EIF3B	www.ncbi.nlm.ni...
Null ppi.TAF15	View Gene Set	0.001493	12	0.02433	141	Protein-protein-interaction for TAF15	www.ncbi.nlm.ni...
Null ppi.MED29	View Gene Set	0.001613	37	0.02591	142	Protein-protein-interaction for MED29	www.ncbi.nlm.ni...
Null ppi.CPSF7	View Gene Set	0.001603	11	0.02591	142	Protein-protein-interaction for CPSF7	www.ncbi.nlm.ni...
Null ppi.MYSM1	View Gene Set	0.001643	13	0.02615	144	Protein-protein-interaction for MYSM1	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.001651	13	0.02615	144	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.BAZ1B	View Gene Set	0.001665	30	0.02619	146	Protein-protein-interaction for BAZ1B	www.ncbi.nlm.ni...
Null ppi.EP400	View Gene Set	0.001824	10	0.02831	147	Protein-protein-interaction for EP400	www.ncbi.nlm.ni...
Null ppi.DDA1	View Gene Set	0.001819	44	0.02831	147	Protein-protein-interaction for DDA1	www.ncbi.nlm.ni...
Null ppi.64015	View Gene Set	0.001863	6	0.02873	149	Protein-protein-interaction for 64015	www.ncbi.nlm.ni...
Null ppi.TOPBP1	View Gene Set	0.002001	14	0.02984	150	Protein-protein-interaction for TOPBP1	www.ncbi.nlm.ni...
Null ppi.HNRNPUL1	View Gene Set	0.001967	9	0.02984	150	Protein-protein-interaction for HNRNPUL1	www.ncbi.nlm.ni...
Null ppi.RNF126	View Gene Set	0.001953	7	0.02984	150	Protein-protein-interaction for RNF126	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	0.001975	38	0.02984	150	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.SNRPD3	View Gene Set	0.001988	7	0.02984	150	Protein-protein-interaction for SNRPD3	www.ncbi.nlm.ni...
Null ppi.TBL1XR1	View Gene Set	0.002033	9	0.03013	155	Protein-protein-interaction for TBL1XR1	www.ncbi.nlm.ni...
Null ppi.EIF3G	View Gene Set	0.002048	8	0.03015	156	Protein-protein-interaction for EIF3G	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	0.002072	9	0.03031	157	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.MGMT	View Gene Set	0.002109	28	0.03067	158	Protein-protein-interaction for MGMT	www.ncbi.nlm.ni...
Null ppi.DPY30	View Gene Set	0.002138	9	0.03089	159	Protein-protein-interaction for DPY30	www.ncbi.nlm.ni...
Null ppi.C8orf41	View Gene Set	0.002185	10	0.03136	160	Protein-protein-interaction for C8orf41	www.ncbi.nlm.ni...
Null ppi.LYAR	View Gene Set	0.0022	26	0.03139	161	Protein-protein-interaction for LYAR	www.ncbi.nlm.ni...
Null ppi.KAT2A	View Gene Set	0.002216	12	0.03143	162	Protein-protein-interaction for KAT2A	www.ncbi.nlm.ni...
Null ppi.PAFAH1B3	View Gene Set	0.00228	10	0.03167	163	Protein-protein-interaction for PAFAH1B3	www.ncbi.nlm.ni...
Null ppi.SNRPE	View Gene Set	0.002258	7	0.03167	163	Protein-protein-interaction for SNRPE	www.ncbi.nlm.ni...
Null ppi.MYST1	View Gene Set	0.002289	14	0.03167	163	Protein-protein-interaction for MYST1	www.ncbi.nlm.ni...
Null ppi.EXO1	View Gene Set	0.002277	7	0.03167	163	Protein-protein-interaction for EXO1	www.ncbi.nlm.ni...
Null ppi.SRSF9	View Gene Set	0.002398	6	0.03299	167	Protein-protein-interaction for SRSF9	www.ncbi.nlm.ni...
Null ppi.PAAF1	View Gene Set	0.002413	20	0.03299	168	Protein-protein-interaction for PAAF1	www.ncbi.nlm.ni...
Null ppi.PRKAA1	View Gene Set	0.002436	6	0.03311	169	Protein-protein-interaction for PRKAA1	www.ncbi.nlm.ni...
Null ppi.TH1L	View Gene Set	0.002473	26	0.03341	170	Protein-protein-interaction for TH1L	www.ncbi.nlm.ni...
Null ppi.64196	View Gene Set	0.002573	6	0.03436	171	Protein-protein-interaction for 64196	www.ncbi.nlm.ni...
Null ppi.TRIM26	View Gene Set	0.002571	6	0.03436	171	Protein-protein-interaction for TRIM26	www.ncbi.nlm.ni...
Null ppi.POLR2J	View Gene Set	0.002727	15	0.03613	173	Protein-protein-interaction for POLR2J	www.ncbi.nlm.ni...
Null ppi.LSM10	View Gene Set	0.002737	9	0.03613	173	Protein-protein-interaction for LSM10	www.ncbi.nlm.ni...
Null ppi.XRN2	View Gene Set	0.002773	7	0.03617	175	Protein-protein-interaction for XRN2	www.ncbi.nlm.ni...
Null ppi.RAN	View Gene Set	0.002787	8	0.03617	175	Protein-protein-interaction for RAN	www.ncbi.nlm.ni...
Null ppi.NMI	View Gene Set	0.00278	12	0.03617	175	Protein-protein-interaction for NMI	www.ncbi.nlm.ni...
Null ppi.MED10	View Gene Set	0.002938	44	0.03791	178	Protein-protein-interaction for MED10	www.ncbi.nlm.ni...
Null ppi.PCBD1	View Gene Set	0.003037	6	0.03898	179	Protein-protein-interaction for PCBD1	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	0.003065	11	0.03912	180	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.ORC5L	View Gene Set	0.003179	8	0.04034	181	Protein-protein-interaction for ORC5L	www.ncbi.nlm.ni...
Null ppi.PPP4R2	View Gene Set	0.003277	7	0.04136	182	Protein-protein-interaction for PPP4R2	www.ncbi.nlm.ni...
Null ppi.ILF3	View Gene Set	0.003329	6	0.04178	183	Protein-protein-interaction for ILF3	www.ncbi.nlm.ni...
Null ppi.CD2BP2	View Gene Set	0.003431	13	0.04283	184	Protein-protein-interaction for CD2BP2	www.ncbi.nlm.ni...
Null ppi.C19orf40	View Gene Set	0.003456	6	0.04291	185	Protein-protein-interaction for C19orf40	www.ncbi.nlm.ni...
Null ppi.GTF3C3	View Gene Set	0.003537	11	0.04369	186	Protein-protein-interaction for GTF3C3	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	0.003687	38	0.04528	187	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.HIST3H3	View Gene Set	0.003726	16	0.04553	188	Protein-protein-interaction for HIST3H3	www.ncbi.nlm.ni...
Null ppi.HIST1H3A	View Gene Set	0.003769	30	0.0458	189	Protein-protein-interaction for HIST1H3A	www.ncbi.nlm.ni...
Null ppi.MED19	View Gene Set	0.003953	45	0.04779	190	Protein-protein-interaction for MED19	www.ncbi.nlm.ni...
Null ppi.RFC1	View Gene Set	0.003995	18	0.04804	191	Protein-protein-interaction for RFC1	www.ncbi.nlm.ni...
Null ppi.MLH1	View Gene Set	0.004097	9	0.04881	192	Protein-protein-interaction for MLH1	www.ncbi.nlm.ni...
Null ppi.SEH1L	View Gene Set	0.004101	6	0.04881	192	Protein-protein-interaction for SEH1L	www.ncbi.nlm.ni...
Null ppi.UHRF1	View Gene Set	0.004167	8	0.04934	194	Protein-protein-interaction for UHRF1	www.ncbi.nlm.ni...
Null ppi.MED9	View Gene Set	0.004206	31	0.04954	195	Protein-protein-interaction for MED9	www.ncbi.nlm.ni...
Null ppi.RAD51	View Gene Set	0.004231	12	0.04958	196	Protein-protein-interaction for RAD51	www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.SFRS12	View Gene Set	9.822e-16	49	2.332e-12	1	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	6.65e-08	166	7.893e-05	2	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.SNIP1	View Gene Set	1.506e-06	27	0.001192	3	Protein-protein-interaction for SNIP1	www.ncbi.nlm.ni...
Null ppi.SUMO4	View Gene Set	3.299e-06	76	0.001958	4	Protein-protein-interaction for SUMO4	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	7.102e-06	18	0.003372	5	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	1.253e-05	17	0.004958	6	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	4.662e-05	8	0.01383	7	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.NAA38	View Gene Set	4.13e-05	20	0.01383	7	Protein-protein-interaction for NAA38	www.ncbi.nlm.ni...
Null ppi.SMN2	View Gene Set	6.35e-05	9	0.01433	9	Protein-protein-interaction for SMN2	www.ncbi.nlm.ni...
Null ppi.SIP1	View Gene Set	6.642e-05	13	0.01433	9	Protein-protein-interaction for SIP1	www.ncbi.nlm.ni...
Null ppi.EIF2S2	View Gene Set	5.9e-05	17	0.01433	9	Protein-protein-interaction for EIF2S2	www.ncbi.nlm.ni...
Null ppi.RAN	View Gene Set	9.384e-05	14	0.01714	12	Protein-protein-interaction for RAN	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	9.302e-05	13	0.01714	12	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.XRN1	View Gene Set	0.0001037	24	0.01759	14	Protein-protein-interaction for XRN1	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	0.0001295	26	0.02049	15	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.NUP98	View Gene Set	0.0001687	8	0.02504	16	Protein-protein-interaction for NUP98	www.ncbi.nlm.ni...
Null ppi.GEMIN5	View Gene Set	0.0001876	10	0.0262	17	Protein-protein-interaction for GEMIN5	www.ncbi.nlm.ni...
Null ppi.NUP62	View Gene Set	0.0002067	19	0.02643	18	Protein-protein-interaction for NUP62	www.ncbi.nlm.ni...
Null ppi.PGR	View Gene Set	0.0002115	9	0.02643	18	Protein-protein-interaction for PGR	www.ncbi.nlm.ni...
Null ppi.LSM5	View Gene Set	0.0002827	6	0.02796	20	Protein-protein-interaction for LSM5	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	0.0002616	11	0.02796	20	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	0.0002757	10	0.02796	20	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	0.0002697	11	0.02796	20	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.C4orf14	View Gene Set	0.0002743	12	0.02796	20	Protein-protein-interaction for C4orf14	www.ncbi.nlm.ni...
Null ppi.NCBP2	View Gene Set	0.0003624	6	0.03441	25	Protein-protein-interaction for NCBP2	www.ncbi.nlm.ni...
Null ppi.NXF1	View Gene Set	0.0003988	14	0.03641	26	Protein-protein-interaction for NXF1	www.ncbi.nlm.ni...
Null ppi.UPF2	View Gene Set	0.000449	16	0.0387	27	Protein-protein-interaction for UPF2	www.ncbi.nlm.ni...
Null ppi.SRSF9	View Gene Set	0.0004564	7	0.0387	27	Protein-protein-interaction for SRSF9	www.ncbi.nlm.ni...
Null ppi.RPL5	View Gene Set	0.0004784	10	0.03916	29	Protein-protein-interaction for RPL5	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.0005267	22	0.04033	30	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.GEMIN7	View Gene Set	0.0005154	9	0.04033	30	Protein-protein-interaction for GEMIN7	www.ncbi.nlm.ni...
Null ppi.RALYL	View Gene Set	0.0005646	11	0.04189	32	Protein-protein-interaction for RALYL	www.ncbi.nlm.ni...
Null ppi.EIF5	View Gene Set	0.000607	6	0.04367	33	Protein-protein-interaction for EIF5	www.ncbi.nlm.ni...
Null ppi.SRPK1	View Gene Set	0.0006264	12	0.04374	34	Protein-protein-interaction for SRPK1	www.ncbi.nlm.ni...
Null ppi.XPOT	View Gene Set	0.0006825	6	0.04629	35	Protein-protein-interaction for XPOT	www.ncbi.nlm.ni...
Null ppi.LSM3	View Gene Set	0.0007561	12	0.04929	36	Protein-protein-interaction for LSM3	www.ncbi.nlm.ni...
Null ppi.RBM8A	View Gene Set	0.0007681	6	0.04929	36	Protein-protein-interaction for RBM8A	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	1.415e-36	251	5.085e-33	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	3.901e-21	147	7.011e-18	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.SFRS12	View Gene Set	4.131e-16	50	4.949e-13	3	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	5.006e-12	66	4.498e-09	4	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	5.637e-10	101	4.052e-07	5	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	1.225e-08	48	7.336e-06	6	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	4.202e-08	42	2.157e-05	7	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.GPN1	View Gene Set	8.089e-08	27	3.634e-05	8	Protein-protein-interaction for GPN1	www.ncbi.nlm.ni...
Null ppi.RPA1	View Gene Set	2.113e-07	24	7.337e-05	9	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	2.654e-07	25	7.337e-05	9	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	2.585e-07	21	7.337e-05	9	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	1.912e-07	42	7.337e-05	9	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.USP42	View Gene Set	2.591e-07	24	7.337e-05	9	Protein-protein-interaction for USP42	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	2.966e-07	220	7.615e-05	14	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	4.49e-07	31	0.0001076	15	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	7.404e-07	52	0.0001663	16	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.RRP1B	View Gene Set	7.892e-07	21	0.0001668	17	Protein-protein-interaction for RRP1B	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	2.049e-06	35	0.0003876	18	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.NAA38	View Gene Set	2.036e-06	28	0.0003876	18	Protein-protein-interaction for NAA38	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	2.182e-06	21	0.000392	20	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.EIF3F	View Gene Set	2.503e-06	25	0.0004284	21	Protein-protein-interaction for EIF3F	www.ncbi.nlm.ni...
Null ppi.GIGYF2	View Gene Set	2.667e-06	19	0.000429	22	Protein-protein-interaction for GIGYF2	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	2.746e-06	20	0.000429	22	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.SUMO4	View Gene Set	3.299e-06	76	0.0004428	24	Protein-protein-interaction for SUMO4	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	3.208e-06	96	0.0004428	24	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	3.326e-06	55	0.0004428	24	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.SNIP1	View Gene Set	3.194e-06	28	0.0004428	24	Protein-protein-interaction for SNIP1	www.ncbi.nlm.ni...
Null ppi.RNU12-2P	View Gene Set	3.851e-06	18	0.0004773	28	Protein-protein-interaction for RNU12-2P	www.ncbi.nlm.ni...
Null ppi.RNU11	View Gene Set	3.851e-06	18	0.0004773	28	Protein-protein-interaction for RNU11	www.ncbi.nlm.ni...
Null ppi.UCHL5	View Gene Set	5.423e-06	34	0.0006497	30	Protein-protein-interaction for UCHL5	www.ncbi.nlm.ni...
Null ppi.RAD50	View Gene Set	5.748e-06	21	0.0006664	31	Protein-protein-interaction for RAD50	www.ncbi.nlm.ni...
Null ppi.PABPC1	View Gene Set	6.206e-06	37	0.000697	32	Protein-protein-interaction for PABPC1	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	6.445e-06	44	0.0007019	33	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	8.945e-06	15	0.0008894	34	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.USP36	View Gene Set	8.643e-06	17	0.0008894	34	Protein-protein-interaction for USP36	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	9.156e-06	18	0.0008894	34	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.MED26	View Gene Set	9.139e-06	23	0.0008894	34	Protein-protein-interaction for MED26	www.ncbi.nlm.ni...
Null ppi.RUVBL2	View Gene Set	9.773e-06	72	0.0009243	38	Protein-protein-interaction for RUVBL2	www.ncbi.nlm.ni...
Null ppi.ORC6L	View Gene Set	1.051e-05	15	0.000969	39	Protein-protein-interaction for ORC6L	www.ncbi.nlm.ni...
Null ppi.RPAP2	View Gene Set	1.29e-05	43	0.001159	40	Protein-protein-interaction for RPAP2	www.ncbi.nlm.ni...
Null ppi.PSMD13	View Gene Set	1.614e-05	20	0.001415	41	Protein-protein-interaction for PSMD13	www.ncbi.nlm.ni...
Null ppi.EIF3H	View Gene Set	2.746e-05	16	0.00235	42	Protein-protein-interaction for EIF3H	www.ncbi.nlm.ni...
Null ppi.UPF2	View Gene Set	2.935e-05	19	0.002453	43	Protein-protein-interaction for UPF2	www.ncbi.nlm.ni...
Null ppi.GEMIN6	View Gene Set	3.323e-05	14	0.002714	44	Protein-protein-interaction for GEMIN6	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	3.415e-05	46	0.002727	45	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.TERF2	View Gene Set	3.757e-05	10	0.002936	46	Protein-protein-interaction for TERF2	www.ncbi.nlm.ni...
Null ppi.RAN	View Gene Set	4.908e-05	15	0.003753	47	Protein-protein-interaction for RAN	www.ncbi.nlm.ni...
Null ppi.TAF10	View Gene Set	5.034e-05	29	0.003769	48	Protein-protein-interaction for TAF10	www.ncbi.nlm.ni...
Null ppi.EIF2S2	View Gene Set	5.9e-05	17	0.004328	49	Protein-protein-interaction for EIF2S2	www.ncbi.nlm.ni...
Null ppi.NXF1	View Gene Set	6.41e-05	17	0.004517	50	Protein-protein-interaction for NXF1	www.ncbi.nlm.ni...
Null ppi.RPAP1	View Gene Set	6.396e-05	24	0.004517	50	Protein-protein-interaction for RPAP1	www.ncbi.nlm.ni...
Null ppi.PRMT5	View Gene Set	6.971e-05	35	0.004746	52	Protein-protein-interaction for PRMT5	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	7.11e-05	16	0.004746	52	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.HNRNPL	View Gene Set	7.262e-05	9	0.004746	52	Protein-protein-interaction for HNRNPL	www.ncbi.nlm.ni...
Null ppi.XRN1	View Gene Set	7.263e-05	25	0.004746	52	Protein-protein-interaction for XRN1	www.ncbi.nlm.ni...
Null ppi.SNUPN	View Gene Set	7.872e-05	12	0.005052	56	Protein-protein-interaction for SNUPN	www.ncbi.nlm.ni...
Null ppi.GIYD2	View Gene Set	8.391e-05	32	0.005291	57	Protein-protein-interaction for GIYD2	www.ncbi.nlm.ni...
Null ppi.SIP1	View Gene Set	8.785e-05	17	0.005444	58	Protein-protein-interaction for SIP1	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.0001024	12	0.006036	59	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.PDS5A	View Gene Set	0.0001023	6	0.006036	59	Protein-protein-interaction for PDS5A	www.ncbi.nlm.ni...
Null ppi.NUP62	View Gene Set	0.0001016	25	0.006036	59	Protein-protein-interaction for NUP62	www.ncbi.nlm.ni...
Null ppi.GEMIN5	View Gene Set	0.0001086	14	0.006298	62	Protein-protein-interaction for GEMIN5	www.ncbi.nlm.ni...
Null ppi.LSM2	View Gene Set	0.0001147	26	0.006443	63	Protein-protein-interaction for LSM2	www.ncbi.nlm.ni...
Null ppi.CHTF18	View Gene Set	0.0001144	13	0.006443	63	Protein-protein-interaction for CHTF18	www.ncbi.nlm.ni...
Null ppi.DDX20	View Gene Set	0.0001269	26	0.006944	65	Protein-protein-interaction for DDX20	www.ncbi.nlm.ni...
Null ppi.ZBTB9	View Gene Set	0.0001286	16	0.006944	65	Protein-protein-interaction for ZBTB9	www.ncbi.nlm.ni...
Null ppi.USP50	View Gene Set	0.0001294	22	0.006944	65	Protein-protein-interaction for USP50	www.ncbi.nlm.ni...
Null ppi.PSMD14	View Gene Set	0.0001654	16	0.008597	68	Protein-protein-interaction for PSMD14	www.ncbi.nlm.ni...
Null ppi.RALYL	View Gene Set	0.0001674	12	0.008597	68	Protein-protein-interaction for RALYL	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	0.0001674	11	0.008597	68	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.RNMTL1	View Gene Set	0.0001747	8	0.008602	71	Protein-protein-interaction for RNMTL1	www.ncbi.nlm.ni...
Null ppi.UPF3A	View Gene Set	0.0001736	18	0.008602	71	Protein-protein-interaction for UPF3A	www.ncbi.nlm.ni...
Null ppi.SNORD3A	View Gene Set	0.0001729	9	0.008602	71	Protein-protein-interaction for SNORD3A	www.ncbi.nlm.ni...
Null ppi.SMN2	View Gene Set	0.0001826	11	0.008869	74	Protein-protein-interaction for SMN2	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	0.0001958	17	0.009385	75	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.SAE1	View Gene Set	0.0002014	10	0.009526	76	Protein-protein-interaction for SAE1	www.ncbi.nlm.ni...
Null ppi.GAR1	View Gene Set	0.0002086	10	0.009735	77	Protein-protein-interaction for GAR1	www.ncbi.nlm.ni...
Null ppi.SMC1A	View Gene Set	0.0002185	23	0.01007	78	Protein-protein-interaction for SMC1A	www.ncbi.nlm.ni...
Null ppi.MSH2	View Gene Set	0.0002349	20	0.01068	79	Protein-protein-interaction for MSH2	www.ncbi.nlm.ni...
Null ppi.BANF1	View Gene Set	0.0002385	35	0.01072	80	Protein-protein-interaction for BANF1	www.ncbi.nlm.ni...
Null ppi.MCM6	View Gene Set	0.0002586	7	0.01147	81	Protein-protein-interaction for MCM6	www.ncbi.nlm.ni...
Null ppi.SUB1	View Gene Set	0.0002681	14	0.01171	82	Protein-protein-interaction for SUB1	www.ncbi.nlm.ni...
Null ppi.LSM5	View Gene Set	0.0002827	6	0.01171	82	Protein-protein-interaction for LSM5	www.ncbi.nlm.ni...
Null ppi.NUP43	View Gene Set	0.0002753	6	0.01171	82	Protein-protein-interaction for NUP43	www.ncbi.nlm.ni...
Null ppi.ING3	View Gene Set	0.0002779	12	0.01171	82	Protein-protein-interaction for ING3	www.ncbi.nlm.ni...
Null ppi.C4orf14	View Gene Set	0.0002743	12	0.01171	82	Protein-protein-interaction for C4orf14	www.ncbi.nlm.ni...
Null ppi.TTI1	View Gene Set	0.0002868	8	0.01171	82	Protein-protein-interaction for TTI1	www.ncbi.nlm.ni...
Null ppi.MED13	View Gene Set	0.0002854	12	0.01171	82	Protein-protein-interaction for MED13	www.ncbi.nlm.ni...
Null ppi.PMS2	View Gene Set	0.0003064	14	0.01225	89	Protein-protein-interaction for PMS2	www.ncbi.nlm.ni...
Null ppi.MED23	View Gene Set	0.0003067	15	0.01225	89	Protein-protein-interaction for MED23	www.ncbi.nlm.ni...
Null ppi.COPS4	View Gene Set	0.0003126	17	0.01228	91	Protein-protein-interaction for COPS4	www.ncbi.nlm.ni...
Null ppi.SF3A2	View Gene Set	0.0003143	16	0.01228	91	Protein-protein-interaction for SF3A2	www.ncbi.nlm.ni...
Null ppi.WDR48	View Gene Set	0.0003209	52	0.0124	93	Protein-protein-interaction for WDR48	www.ncbi.nlm.ni...
Null ppi.ORC5L	View Gene Set	0.0003248	11	0.01242	94	Protein-protein-interaction for ORC5L	www.ncbi.nlm.ni...
Null ppi.POLR3H	View Gene Set	0.0003409	15	0.0129	95	Protein-protein-interaction for POLR3H	www.ncbi.nlm.ni...
Null ppi.TAF1D	View Gene Set	0.0003574	21	0.01338	96	Protein-protein-interaction for TAF1D	www.ncbi.nlm.ni...
Null ppi.NCBP2	View Gene Set	0.0003624	6	0.01343	97	Protein-protein-interaction for NCBP2	www.ncbi.nlm.ni...
Null ppi.SIN3A	View Gene Set	0.0003903	116	0.01432	98	Protein-protein-interaction for SIN3A	www.ncbi.nlm.ni...
Null ppi.COPS8	View Gene Set	0.0004173	13	0.015	99	Protein-protein-interaction for COPS8	www.ncbi.nlm.ni...
Null ppi.H2AFY	View Gene Set	0.0004155	13	0.015	99	Protein-protein-interaction for H2AFY	www.ncbi.nlm.ni...
Null ppi.MRE11A	View Gene Set	0.000426	16	0.01516	101	Protein-protein-interaction for MRE11A	www.ncbi.nlm.ni...
Null ppi.MED24	View Gene Set	0.0004354	20	0.01534	102	Protein-protein-interaction for MED24	www.ncbi.nlm.ni...
Null ppi.ATRIP	View Gene Set	0.0004421	13	0.01543	103	Protein-protein-interaction for ATRIP	www.ncbi.nlm.ni...
Null ppi.LSM3	View Gene Set	0.0004537	13	0.01565	104	Protein-protein-interaction for LSM3	www.ncbi.nlm.ni...
Null ppi.PRMT1	View Gene Set	0.0004572	17	0.01565	104	Protein-protein-interaction for PRMT1	www.ncbi.nlm.ni...
Null ppi.SUPT16H	View Gene Set	0.0004635	15	0.01571	106	Protein-protein-interaction for SUPT16H	www.ncbi.nlm.ni...
Null ppi.USP39	View Gene Set	0.0004774	16	0.01589	107	Protein-protein-interaction for USP39	www.ncbi.nlm.ni...
Null ppi.ZNF496	View Gene Set	0.0004735	13	0.01589	107	Protein-protein-interaction for ZNF496	www.ncbi.nlm.ni...
Null ppi.NUTF2	View Gene Set	0.0005071	5	0.0164	109	Protein-protein-interaction for NUTF2	www.ncbi.nlm.ni...
Null ppi.SRPK2	View Gene Set	0.0005033	7	0.0164	109	Protein-protein-interaction for SRPK2	www.ncbi.nlm.ni...
Null ppi.XPA	View Gene Set	0.0005158	14	0.0164	109	Protein-protein-interaction for XPA	www.ncbi.nlm.ni...
Null ppi.GEMIN7	View Gene Set	0.0005154	10	0.0164	109	Protein-protein-interaction for GEMIN7	www.ncbi.nlm.ni...
Null ppi.ZRANB2	View Gene Set	0.0005027	11	0.0164	109	Protein-protein-interaction for ZRANB2	www.ncbi.nlm.ni...
Null ppi.KEAP1	View Gene Set	0.000526	22	0.01658	114	Protein-protein-interaction for KEAP1	www.ncbi.nlm.ni...
Null ppi.CDC20	View Gene Set	0.0005499	5	0.01718	115	Protein-protein-interaction for CDC20	www.ncbi.nlm.ni...
Null ppi.XPOT	View Gene Set	0.0005925	9	0.01788	116	Protein-protein-interaction for XPOT	www.ncbi.nlm.ni...
Null ppi.EIF5	View Gene Set	0.000607	6	0.01788	116	Protein-protein-interaction for EIF5	www.ncbi.nlm.ni...
Null ppi.DMAP1	View Gene Set	0.0005827	16	0.01788	116	Protein-protein-interaction for DMAP1	www.ncbi.nlm.ni...
Null ppi.RANGAP1	View Gene Set	0.0005881	5	0.01788	116	Protein-protein-interaction for RANGAP1	www.ncbi.nlm.ni...
Null ppi.DSCC1	View Gene Set	0.0005869	6	0.01788	116	Protein-protein-interaction for DSCC1	www.ncbi.nlm.ni...
Null ppi.SRSF9	View Gene Set	0.0006051	8	0.01788	116	Protein-protein-interaction for SRSF9	www.ncbi.nlm.ni...
Null ppi.USP14	View Gene Set	0.0006064	22	0.01788	116	Protein-protein-interaction for USP14	www.ncbi.nlm.ni...
Null ppi.SRPK1	View Gene Set	0.0006264	12	0.0183	123	Protein-protein-interaction for SRPK1	www.ncbi.nlm.ni...
Null ppi.MDC1	View Gene Set	0.0006332	24	0.01835	124	Protein-protein-interaction for MDC1	www.ncbi.nlm.ni...
Null ppi.RPAP3	View Gene Set	0.0006551	30	0.01879	125	Protein-protein-interaction for RPAP3	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.0006587	14	0.01879	125	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.CD2BP2	View Gene Set	0.0006739	15	0.01907	127	Protein-protein-interaction for CD2BP2	www.ncbi.nlm.ni...
Null ppi.HNRNPUL1	View Gene Set	0.0006899	11	0.01916	128	Protein-protein-interaction for HNRNPUL1	www.ncbi.nlm.ni...
Null ppi.155348	View Gene Set	0.0006989	9	0.01916	128	Protein-protein-interaction for 155348	www.ncbi.nlm.ni...
Null ppi.KAT2A	View Gene Set	0.0007091	14	0.01916	128	Protein-protein-interaction for KAT2A	www.ncbi.nlm.ni...
Null ppi.PGR	View Gene Set	0.0007084	15	0.01916	128	Protein-protein-interaction for PGR	www.ncbi.nlm.ni...
Null ppi.EIF2B5	View Gene Set	0.0007052	10	0.01916	128	Protein-protein-interaction for EIF2B5	www.ncbi.nlm.ni...
Null ppi.EXO1	View Gene Set	0.0007045	8	0.01916	128	Protein-protein-interaction for EXO1	www.ncbi.nlm.ni...
Null ppi.EP400	View Gene Set	0.0007238	11	0.01941	134	Protein-protein-interaction for EP400	www.ncbi.nlm.ni...
Null ppi.OTUB1	View Gene Set	0.0007355	19	0.01944	135	Protein-protein-interaction for OTUB1	www.ncbi.nlm.ni...
Null ppi.PSMD7	View Gene Set	0.0007339	13	0.01944	135	Protein-protein-interaction for PSMD7	www.ncbi.nlm.ni...
Null ppi.PSMD10	View Gene Set	0.0007554	16	0.01982	137	Protein-protein-interaction for PSMD10	www.ncbi.nlm.ni...
Null ppi.RBM8A	View Gene Set	0.0007655	8	0.01994	138	Protein-protein-interaction for RBM8A	www.ncbi.nlm.ni...
Null ppi.POLR1C	View Gene Set	0.0007812	7	0.0202	139	Protein-protein-interaction for POLR1C	www.ncbi.nlm.ni...
Null ppi.TOPORS	View Gene Set	0.000806	28	0.02054	140	Protein-protein-interaction for TOPORS	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.0008042	33	0.02054	140	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.SMAD6	View Gene Set	0.0008218	8	0.0208	142	Protein-protein-interaction for SMAD6	www.ncbi.nlm.ni...
Null ppi.SYNCRIP	View Gene Set	0.000837	22	0.02104	143	Protein-protein-interaction for SYNCRIP	www.ncbi.nlm.ni...
Null ppi.POLR3C	View Gene Set	0.0008601	10	0.02147	144	Protein-protein-interaction for POLR3C	www.ncbi.nlm.ni...
Null ppi.TH1L	View Gene Set	0.0008735	29	0.02151	145	Protein-protein-interaction for TH1L	www.ncbi.nlm.ni...
Null ppi.NOL12	View Gene Set	0.0008738	7	0.02151	145	Protein-protein-interaction for NOL12	www.ncbi.nlm.ni...
Null ppi.MED29	View Gene Set	0.0009119	38	0.0223	147	Protein-protein-interaction for MED29	www.ncbi.nlm.ni...
Null ppi.BRF2	View Gene Set	0.0009252	25	0.02247	148	Protein-protein-interaction for BRF2	www.ncbi.nlm.ni...
Null ppi.MYC	View Gene Set	0.000987	56	0.02365	149	Protein-protein-interaction for MYC	www.ncbi.nlm.ni...
Null ppi.MED10	View Gene Set	0.000985	46	0.02365	149	Protein-protein-interaction for MED10	www.ncbi.nlm.ni...
Null ppi.UPF1	View Gene Set	0.0009958	8	0.0237	151	Protein-protein-interaction for UPF1	www.ncbi.nlm.ni...
Null ppi.ILF3	View Gene Set	0.001005	7	0.02377	152	Protein-protein-interaction for ILF3	www.ncbi.nlm.ni...
Null ppi.OSBPL10	View Gene Set	0.001094	15	0.0257	153	Protein-protein-interaction for OSBPL10	www.ncbi.nlm.ni...
Null ppi.MCM10	View Gene Set	0.001102	28	0.02572	154	Protein-protein-interaction for MCM10	www.ncbi.nlm.ni...
Null ppi.POLR1A	View Gene Set	0.001128	13	0.02616	155	Protein-protein-interaction for POLR1A	www.ncbi.nlm.ni...
Null ppi.PDHX	View Gene Set	0.001138	7	0.02616	155	Protein-protein-interaction for PDHX	www.ncbi.nlm.ni...
Null ppi.NUP153	View Gene Set	0.001143	16	0.02616	155	Protein-protein-interaction for NUP153	www.ncbi.nlm.ni...
Null ppi.XPO1	View Gene Set	0.001155	43	0.02628	158	Protein-protein-interaction for XPO1	www.ncbi.nlm.ni...
Null ppi.BRCC3	View Gene Set	0.001212	22	0.02739	159	Protein-protein-interaction for BRCC3	www.ncbi.nlm.ni...
Null ppi.CDC45	View Gene Set	0.001219	13	0.02739	159	Protein-protein-interaction for CDC45	www.ncbi.nlm.ni...
Null ppi.HNRNPH1	View Gene Set	0.001247	9	0.02777	161	Protein-protein-interaction for HNRNPH1	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	0.001252	49	0.02777	161	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.RANBP3	View Gene Set	0.001268	6	0.02796	163	Protein-protein-interaction for RANBP3	www.ncbi.nlm.ni...
Null ppi.THAP7	View Gene Set	0.001295	12	0.02839	164	Protein-protein-interaction for THAP7	www.ncbi.nlm.ni...
Null ppi.SNRPF	View Gene Set	0.001342	6	0.02923	165	Protein-protein-interaction for SNRPF	www.ncbi.nlm.ni...
Null ppi.TBL1XR1	View Gene Set	0.001361	12	0.02947	166	Protein-protein-interaction for TBL1XR1	www.ncbi.nlm.ni...
Null ppi.PPARGC1A	View Gene Set	0.001433	39	0.03084	167	Protein-protein-interaction for PPARGC1A	www.ncbi.nlm.ni...
Null ppi.PSMD6	View Gene Set	0.001468	23	0.0314	168	Protein-protein-interaction for PSMD6	www.ncbi.nlm.ni...
Null ppi.CDK12	View Gene Set	0.001491	8	0.0317	169	Protein-protein-interaction for CDK12	www.ncbi.nlm.ni...
Null ppi.EXOSC6	View Gene Set	0.001503	31	0.03173	170	Protein-protein-interaction for EXOSC6	www.ncbi.nlm.ni...
Null ppi.UHRF1	View Gene Set	0.001519	12	0.03173	170	Protein-protein-interaction for UHRF1	www.ncbi.nlm.ni...
Null ppi.NBN	View Gene Set	0.001515	16	0.03173	170	Protein-protein-interaction for NBN	www.ncbi.nlm.ni...
Null ppi.NUP98	View Gene Set	0.001532	12	0.03182	173	Protein-protein-interaction for NUP98	www.ncbi.nlm.ni...
Null ppi.WWOX	View Gene Set	0.001567	26	0.03237	174	Protein-protein-interaction for WWOX	www.ncbi.nlm.ni...
Null ppi.RNF126	View Gene Set	0.00158	8	0.03244	175	Protein-protein-interaction for RNF126	www.ncbi.nlm.ni...
Null ppi.MYSM1	View Gene Set	0.001643	13	0.03326	176	Protein-protein-interaction for MYSM1	www.ncbi.nlm.ni...
Null ppi.RPL5	View Gene Set	0.001635	11	0.03326	176	Protein-protein-interaction for RPL5	www.ncbi.nlm.ni...
Null ppi.AURKA	View Gene Set	0.001652	16	0.03326	176	Protein-protein-interaction for AURKA	www.ncbi.nlm.ni...
Null ppi.GTF3C3	View Gene Set	0.001657	12	0.03326	176	Protein-protein-interaction for GTF3C3	www.ncbi.nlm.ni...
Null ppi.SNRPD1	View Gene Set	0.00167	6	0.03334	180	Protein-protein-interaction for SNRPD1	www.ncbi.nlm.ni...
Null ppi.DNTTIP2	View Gene Set	0.001741	7	0.03457	181	Protein-protein-interaction for DNTTIP2	www.ncbi.nlm.ni...
Null ppi.CPSF7	View Gene Set	0.001779	13	0.03512	182	Protein-protein-interaction for CPSF7	www.ncbi.nlm.ni...
Null ppi.MCM5	View Gene Set	0.001792	7	0.03518	183	Protein-protein-interaction for MCM5	www.ncbi.nlm.ni...
Null ppi.DDA1	View Gene Set	0.001819	44	0.03554	184	Protein-protein-interaction for DDA1	www.ncbi.nlm.ni...
Null ppi.64015	View Gene Set	0.001863	6	0.0362	185	Protein-protein-interaction for 64015	www.ncbi.nlm.ni...
Null ppi.ELP3	View Gene Set	0.001932	9	0.03734	186	Protein-protein-interaction for ELP3	www.ncbi.nlm.ni...
Null ppi.THOC4	View Gene Set	0.001994	5	0.03813	187	Protein-protein-interaction for THOC4	www.ncbi.nlm.ni...
Null ppi.SNRPD3	View Gene Set	0.001988	7	0.03813	187	Protein-protein-interaction for SNRPD3	www.ncbi.nlm.ni...
Null ppi.EIF3G	View Gene Set	0.002048	8	0.03894	189	Protein-protein-interaction for EIF3G	www.ncbi.nlm.ni...
Null ppi.PCNA	View Gene Set	0.002075	47	0.03925	190	Protein-protein-interaction for PCNA	www.ncbi.nlm.ni...
Null ppi.MCM2	View Gene Set	0.002091	13	0.03934	191	Protein-protein-interaction for MCM2	www.ncbi.nlm.ni...
Null ppi.MGMT	View Gene Set	0.002109	28	0.03949	192	Protein-protein-interaction for MGMT	www.ncbi.nlm.ni...
Null ppi.EXOSC4	View Gene Set	0.002136	21	0.03977	193	Protein-protein-interaction for EXOSC4	www.ncbi.nlm.ni...
Null ppi.C8orf41	View Gene Set	0.002185	10	0.04047	194	Protein-protein-interaction for C8orf41	www.ncbi.nlm.ni...
Null ppi.LYAR	View Gene Set	0.0022	26	0.04055	195	Protein-protein-interaction for LYAR	www.ncbi.nlm.ni...
Null ppi.SNRPE	View Gene Set	0.002258	7	0.0414	196	Protein-protein-interaction for SNRPE	www.ncbi.nlm.ni...
Null ppi.PAFAH1B3	View Gene Set	0.00228	10	0.04155	197	Protein-protein-interaction for PAFAH1B3	www.ncbi.nlm.ni...
Null ppi.MYST1	View Gene Set	0.002289	14	0.04155	197	Protein-protein-interaction for MYST1	www.ncbi.nlm.ni...
Null ppi.TIMM44	View Gene Set	0.002331	5	0.04189	199	Protein-protein-interaction for TIMM44	www.ncbi.nlm.ni...
Null ppi.SRSF2	View Gene Set	0.002324	6	0.04189	199	Protein-protein-interaction for SRSF2	www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null TNF alpha/NF-kB	View Gene Set	0.001605	170	0.01605	1	CELL_MAP - TNF alpha/NF-kB gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null purine nucleotides de novo biosynthesis II	View Gene Set	0.0001184	11	0.03078	1	HUMANCYC - purine nucleotides de novo biosynthesis II gene set	www.pathwaycomm...
Null folate polyglutamylation	View Gene Set	0.0002534	5	0.03294	2	HUMANCYC - folate polyglutamylation gene set	www.pathwaycomm...
Null folate transformations	View Gene Set	0.0005929	9	0.03854	3	HUMANCYC - folate transformations gene set	www.pathwaycomm...
Null pyrimidine ribonucleotides de novo biosynthesis	View Gene Set	0.000538	11	0.03854	3	HUMANCYC - pyrimidine ribonucleotides de novo biosynthesis gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Validated targets of C-MYC transcriptional activation	View Gene Set	5.739e-13	80	1.067e-10	1	NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set	www.pathwaycomm...
Null C-MYC pathway	View Gene Set	1.152e-08	149	1.071e-06	2	NCI_NATURE - C-MYC pathway gene set	www.pathwaycomm...
Null Signaling events mediated by HDAC Class I	View Gene Set	3.05e-05	114	0.001891	3	NCI_NATURE - Signaling events mediated by HDAC Class I gene set	www.pathwaycomm...
Null Regulation of Telomerase	View Gene Set	0.0008584	68	0.03992	4	NCI_NATURE - Regulation of Telomerase gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null Gene Expression	View Gene Set	2.219e-39	381	2.478e-36	1	REACTOME - Gene Expression gene set	www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA	View Gene Set	7.894e-34	138	4.409e-31	2	REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set	www.pathwaycomm...
Null mRNA Processing	View Gene Set	4.443e-30	158	1.654e-27	3	REACTOME - mRNA Processing gene set	www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript	View Gene Set	9.836e-29	185	2.747e-26	4	REACTOME - Formation and Maturation of mRNA Transcript gene set	www.pathwaycomm...
Null mRNA Splicing - Major Pathway	View Gene Set	6.18e-26	107	1.151e-23	5	REACTOME - mRNA Splicing - Major Pathway gene set	www.pathwaycomm...
Null mRNA Splicing	View Gene Set	6.18e-26	107	1.151e-23	5	REACTOME - mRNA Splicing gene set	www.pathwaycomm...
Null Metabolism of RNA	View Gene Set	6.744e-22	174	1.076e-19	7	REACTOME - Metabolism of RNA gene set	www.pathwaycomm...
Null DNA Replication	View Gene Set	9.04e-20	200	1.262e-17	8	REACTOME - DNA Replication gene set	www.pathwaycomm...
Null Mitotic M-M/G1 phases	View Gene Set	3.716e-19	180	4.612e-17	9	REACTOME - Mitotic M-M/G1 phases gene set	www.pathwaycomm...
Null Cell Cycle Mitotic	View Gene Set	2.41e-18	312	2.692e-16	10	REACTOME - Cell Cycle Mitotic gene set	www.pathwaycomm... Mitotic&format=...
Null Transport of Mature Transcript to Cytoplasm	View Gene Set	1.51e-17	55	1.533e-15	11	REACTOME - Transport of Mature Transcript to Cytoplasm gene set	www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript	View Gene Set	7.94e-17	51	7.391e-15	12	REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set	www.pathwaycomm...
Null Transcription	View Gene Set	3.485e-16	178	2.839e-14	13	REACTOME - Transcription gene set	www.pathwaycomm...
Null snRNP Assembly	View Gene Set	3.812e-16	50	2.839e-14	13	REACTOME - snRNP Assembly gene set	www.pathwaycomm...
Null Metabolism of non-coding RNA	View Gene Set	3.812e-16	50	2.839e-14	13	REACTOME - Metabolism of non-coding RNA gene set	www.pathwaycomm...
Null tRNA Aminoacylation	View Gene Set	1.634e-13	42	1.141e-11	16	REACTOME - tRNA Aminoacylation gene set	www.pathwaycomm...
Null Post-Elongation Processing of the Transcript	View Gene Set	1.092e-12	43	6.417e-11	17	REACTOME - Post-Elongation Processing of the Transcript gene set	www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region	View Gene Set	1.092e-12	43	6.417e-11	17	REACTOME - Cleavage of Growing Transcript in the Termination Region gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription Termination	View Gene Set	1.092e-12	43	6.417e-11	17	REACTOME - RNA Polymerase II Transcription Termination gene set	www.pathwaycomm...
Null Cell Cycle Checkpoints	View Gene Set	1.485e-12	124	8.291e-11	20	REACTOME - Cell Cycle Checkpoints gene set	www.pathwaycomm...
Null Interactions of Rev with host cellular proteins	View Gene Set	6.027e-12	33	3.206e-10	21	REACTOME - Interactions of Rev with host cellular proteins gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA	View Gene Set	8.793e-12	34	4.27e-10	22	REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set	www.pathwaycomm...
Null mRNA 3'-end processing	View Gene Set	8.793e-12	34	4.27e-10	22	REACTOME - mRNA 3'-end processing gene set	www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA	View Gene Set	1.459e-11	32	6.791e-10	24	REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set	www.pathwaycomm...
Null M Phase	View Gene Set	3.981e-11	90	1.779e-09	25	REACTOME - M Phase gene set	www.pathwaycomm...
Null Mitotic Prometaphase	View Gene Set	4.19e-11	86	1.8e-09	26	REACTOME - Mitotic Prometaphase gene set	www.pathwaycomm...
Null Transport of Mature mRNAs Derived from Intronless Transcripts	View Gene Set	4.473e-11	36	1.851e-09	27	REACTOME - Transport of Mature mRNAs Derived from Intronless Transcripts gene set	www.pathwaycomm...
Null Transport of Mature mRNA Derived from an Intronless Transcript	View Gene Set	5.276e-11	35	2.105e-09	28	REACTOME - Transport of Mature mRNA Derived from an Intronless Transcript gene set	www.pathwaycomm...
Null Nuclear import of Rev protein	View Gene Set	1.861e-10	30	7.169e-09	29	REACTOME - Nuclear import of Rev protein gene set	www.pathwaycomm...
Null Transport of the SLBP Dependant Mature mRNA	View Gene Set	2.105e-10	33	7.838e-09	30	REACTOME - Transport of the SLBP Dependant Mature mRNA gene set	www.pathwaycomm...
Null HIV Infection	View Gene Set	2.221e-10	194	8.004e-09	31	REACTOME - HIV Infection gene set	www.pathwaycomm...
Null Transport of the SLBP independent Mature mRNA	View Gene Set	2.472e-10	32	8.629e-09	32	REACTOME - Transport of the SLBP independent Mature mRNA gene set	www.pathwaycomm...
Null Metabolism of mRNA	View Gene Set	2.637e-10	125	8.924e-09	33	REACTOME - Metabolism of mRNA gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription	View Gene Set	2.838e-10	101	9.16e-09	34	REACTOME - RNA Polymerase II Transcription gene set	www.pathwaycomm...
Null Export of Viral Ribonucleoproteins from Nucleus	View Gene Set	2.87e-10	31	9.16e-09	34	REACTOME - Export of Viral Ribonucleoproteins from Nucleus gene set	www.pathwaycomm...
Null NEP/NS2 Interacts with the Cellular Export Machinery	View Gene Set	4.821e-10	29	1.496e-08	36	REACTOME - NEP/NS2 Interacts with the Cellular Export Machinery gene set	www.pathwaycomm...
Null HIV Life Cycle	View Gene Set	7.122e-10	103	2.15e-08	37	REACTOME - HIV Life Cycle gene set	www.pathwaycomm...
Null Synthesis of DNA	View Gene Set	7.47e-10	102	2.196e-08	38	REACTOME - Synthesis of DNA gene set	www.pathwaycomm...
Null DNA Replication Pre-Initiation	View Gene Set	8.852e-10	90	2.472e-08	39	REACTOME - DNA Replication Pre-Initiation gene set	www.pathwaycomm...
Null M/G1 Transition	View Gene Set	8.852e-10	90	2.472e-08	39	REACTOME - M/G1 Transition gene set	www.pathwaycomm...
Null S Phase	View Gene Set	2.067e-09	113	5.632e-08	41	REACTOME - S Phase gene set	www.pathwaycomm...
Null Regulation of APC/C activators between G1/S and early anaphase	View Gene Set	2.502e-09	88	6.655e-08	42	REACTOME - Regulation of APC/C activators between G1/S and early anaphase gene set	www.pathwaycomm...
Null Vpr-mediated nuclear import of PICs	View Gene Set	2.694e-09	31	6.838e-08	43	REACTOME - Vpr-mediated nuclear import of PICs gene set	www.pathwaycomm...
Null Cytosolic tRNA aminoacylation	View Gene Set	2.686e-09	24	6.838e-08	43	REACTOME - Cytosolic tRNA aminoacylation gene set	www.pathwaycomm...
Null Late Phase of HIV Life Cycle	View Gene Set	3.966e-09	92	9.843e-08	45	REACTOME - Late Phase of HIV Life Cycle gene set	www.pathwaycomm...
Null Interactions of Vpr with host cellular proteins	View Gene Set	5.148e-09	34	1.25e-07	46	REACTOME - Interactions of Vpr with host cellular proteins gene set	www.pathwaycomm...
Null APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1	View Gene Set	6.413e-09	77	1.524e-07	47	REACTOME - APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 gene set	www.pathwaycomm...
Null Assembly of the pre-replicative complex	View Gene Set	7.855e-09	75	1.755e-07	48	REACTOME - Assembly of the pre-replicative complex gene set	www.pathwaycomm...
Null Regulation of mitotic cell cycle	View Gene Set	7.761e-09	95	1.755e-07	48	REACTOME - Regulation of mitotic cell cycle gene set	www.pathwaycomm...
Null APC/C-mediated degradation of cell cycle proteins	View Gene Set	7.761e-09	95	1.755e-07	48	REACTOME - APC/C-mediated degradation of cell cycle proteins gene set	www.pathwaycomm...
Null Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins	View Gene Set	8.861e-09	86	1.941e-07	51	REACTOME - Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins gene set	www.pathwaycomm...
Null Host Interactions of HIV factors	View Gene Set	9.393e-09	132	2.018e-07	52	REACTOME - Host Interactions of HIV factors gene set	www.pathwaycomm...
Null Chromosome Maintenance	View Gene Set	9.589e-09	69	2.021e-07	53	REACTOME - Chromosome Maintenance gene set	www.pathwaycomm...
Null Transport of Ribonucleoproteins into the Host Nucleus	View Gene Set	1.426e-08	29	2.95e-07	54	REACTOME - Transport of Ribonucleoproteins into the Host Nucleus gene set	www.pathwaycomm...
Null mRNA Splicing - Minor Pathway	View Gene Set	1.497e-08	42	3.04e-07	55	REACTOME - mRNA Splicing - Minor Pathway gene set	www.pathwaycomm...
Null Regulation of Glucokinase by Glucokinase Regulatory Protein	View Gene Set	4.42e-08	29	8.816e-07	56	REACTOME - Regulation of Glucokinase by Glucokinase Regulatory Protein gene set	www.pathwaycomm...
Null Telomere Maintenance	View Gene Set	5.222e-08	49	1.023e-06	57	REACTOME - Telomere Maintenance gene set	www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of Securin	View Gene Set	6.031e-08	72	1.162e-06	58	REACTOME - APC/C:Cdc20 mediated degradation of Securin gene set	www.pathwaycomm...
Null p53-Independent G1/S DNA damage checkpoint	View Gene Set	1.018e-07	62	1.866e-06	59	REACTOME - p53-Independent G1/S DNA damage checkpoint gene set	www.pathwaycomm...
Null p53-Independent DNA Damage Response	View Gene Set	1.018e-07	62	1.866e-06	59	REACTOME - p53-Independent DNA Damage Response gene set	www.pathwaycomm...
Null Cdc20:Phospho-APC/C mediated degradation of Cyclin A	View Gene Set	1.019e-07	75	1.866e-06	59	REACTOME - Cdc20:Phospho-APC/C mediated degradation of Cyclin A gene set	www.pathwaycomm...
Null Ubiquitin Mediated Degradation of Phosphorylated Cdc25A	View Gene Set	1.362e-07	61	2.409e-06	62	REACTOME - Ubiquitin Mediated Degradation of Phosphorylated Cdc25A gene set	www.pathwaycomm...
Null Glucose transport	View Gene Set	1.402e-07	38	2.409e-06	62	REACTOME - Glucose transport gene set	www.pathwaycomm...
Null APC/C:Cdc20 mediated degradation of mitotic proteins	View Gene Set	1.393e-07	77	2.409e-06	62	REACTOME - APC/C:Cdc20 mediated degradation of mitotic proteins gene set	www.pathwaycomm...
Null Destabilization of mRNA by AUF1 (hnRNP D0)	View Gene Set	1.339e-07	63	2.409e-06	62	REACTOME - Destabilization of mRNA by AUF1 (hnRNP D0) gene set	www.pathwaycomm...
Null Regulation of mRNA Stability by Proteins that Bind AU-rich Elements	View Gene Set	1.464e-07	95	2.477e-06	66	REACTOME - Regulation of mRNA Stability by Proteins that Bind AU-rich Elements gene set	www.pathwaycomm...
Null Meiotic Recombination	View Gene Set	1.791e-07	42	2.985e-06	67	REACTOME - Meiotic Recombination gene set	www.pathwaycomm...
Null SCF-beta-TrCP mediated degradation of Emi1	View Gene Set	1.854e-07	60	3.046e-06	68	REACTOME - SCF-beta-TrCP mediated degradation of Emi1 gene set	www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	View Gene Set	2.26e-07	93	3.658e-06	69	REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set	www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null Regulation of DNA replication	View Gene Set	2.363e-07	81	3.771e-06	70	REACTOME - Regulation of DNA replication gene set	www.pathwaycomm...
Null Deadenylation-dependent mRNA decay	View Gene Set	2.834e-07	46	4.458e-06	71	REACTOME - Deadenylation-dependent mRNA decay gene set	www.pathwaycomm...
Null Hexose transport	View Gene Set	3.045e-07	40	4.659e-06	72	REACTOME - Hexose transport gene set	www.pathwaycomm...
Null Removal of licensing factors from origins	View Gene Set	3.008e-07	78	4.659e-06	72	REACTOME - Removal of licensing factors from origins gene set	www.pathwaycomm...
Null Mitochondrial tRNA aminoacylation	View Gene Set	3.59e-07	21	5.419e-06	74	REACTOME - Mitochondrial tRNA aminoacylation gene set	www.pathwaycomm...
Null Influenza Infection	View Gene Set	4.288e-07	143	6.387e-06	75	REACTOME - Influenza Infection gene set	www.pathwaycomm...
Null G1/S Transition	View Gene Set	5.302e-07	104	7.679e-06	76	REACTOME - G1/S Transition gene set	www.pathwaycomm...
Null Switching of origins to a post-replicative state	View Gene Set	5.362e-07	76	7.679e-06	76	REACTOME - Switching of origins to a post-replicative state gene set	www.pathwaycomm...
Null Orc1 removal from chromatin	View Gene Set	5.362e-07	76	7.679e-06	76	REACTOME - Orc1 removal from chromatin gene set	www.pathwaycomm...
Null Metabolism of amino acids and derivatives	View Gene Set	6.627e-07	201	9.37e-06	79	REACTOME - Metabolism of amino acids and derivatives gene set	www.pathwaycomm...
Null G2/M Checkpoints	View Gene Set	7.784e-07	43	1.087e-05	80	REACTOME - G2/M Checkpoints gene set	www.pathwaycomm...
Null Stabilization of p53	View Gene Set	9.567e-07	61	1.319e-05	81	REACTOME - Stabilization of p53 gene set	www.pathwaycomm...
Null Pyruvate metabolism and Citric Acid (TCA) cycle	View Gene Set	1.125e-06	31	1.533e-05	82	REACTOME - Pyruvate metabolism and Citric Acid (TCA) cycle gene set	www.pathwaycomm...
Null CDT1 association with the CDC6:ORC:origin complex	View Gene Set	1.176e-06	66	1.583e-05	83	REACTOME - CDT1 association with the CDC6:ORC:origin complex gene set	www.pathwaycomm...
Null Mitotic G1-G1/S phases	View Gene Set	1.218e-06	113	1.619e-05	84	REACTOME - Mitotic G1-G1/S phases gene set	www.pathwaycomm...
Null Translation	View Gene Set	1.266e-06	120	1.663e-05	85	REACTOME - Translation gene set	www.pathwaycomm...
Null Regulation of activated PAK-2p34 by proteasome mediated degradation	View Gene Set	1.417e-06	57	1.819e-05	86	REACTOME - Regulation of activated PAK-2p34 by proteasome mediated degradation gene set	www.pathwaycomm...
Null Autodegradation of the E3 ubiquitin ligase COP1	View Gene Set	1.414e-06	60	1.819e-05	86	REACTOME - Autodegradation of the E3 ubiquitin ligase COP1 gene set	www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D1	View Gene Set	1.819e-06	59	2.283e-05	88	REACTOME - Ubiquitin-dependent degradation of Cyclin D1 gene set	www.pathwaycomm...
Null Ubiquitin-dependent degradation of Cyclin D	View Gene Set	1.819e-06	59	2.283e-05	88	REACTOME - Ubiquitin-dependent degradation of Cyclin D gene set	www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere	View Gene Set	1.951e-06	35	2.395e-05	90	REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set	www.pathwaycomm...
Null Nucleosome assembly	View Gene Set	1.951e-06	35	2.395e-05	90	REACTOME - Nucleosome assembly gene set	www.pathwaycomm...
Null Degradation of beta-catenin by the destruction complex	View Gene Set	2.047e-06	56	2.459e-05	92	REACTOME - Degradation of beta-catenin by the destruction complex gene set	www.pathwaycomm...
Null Signaling by Wnt	View Gene Set	2.047e-06	56	2.459e-05	92	REACTOME - Signaling by Wnt gene set	www.pathwaycomm...
Null Influenza Life Cycle	View Gene Set	2.405e-06	138	2.858e-05	94	REACTOME - Influenza Life Cycle gene set	www.pathwaycomm...
Null Vpu mediated degradation of CD4	View Gene Set	2.729e-06	57	3.209e-05	95	REACTOME - Vpu mediated degradation of CD4 gene set	www.pathwaycomm...
Null Vif-mediated degradation of APOBEC3G	View Gene Set	2.832e-06	61	3.295e-05	96	REACTOME - Vif-mediated degradation of APOBEC3G gene set	www.pathwaycomm...
Null G1/S DNA Damage Checkpoints	View Gene Set	3.205e-06	68	3.691e-05	97	REACTOME - G1/S DNA Damage Checkpoints gene set	www.pathwaycomm...
Null Metabolism of carbohydrates	View Gene Set	4.16e-06	93	4.742e-05	98	REACTOME - Metabolism of carbohydrates gene set	www.pathwaycomm...
Null CDK-mediated phosphorylation and removal of Cdc6	View Gene Set	4.215e-06	58	4.756e-05	99	REACTOME - CDK-mediated phosphorylation and removal of Cdc6 gene set	www.pathwaycomm...
Null DNA Repair	View Gene Set	4.433e-06	108	4.951e-05	100	REACTOME - DNA Repair gene set	www.pathwaycomm...
Null Autodegradation of Cdh1 by Cdh1:APC/C	View Gene Set	4.774e-06	67	5.279e-05	101	REACTOME - Autodegradation of Cdh1 by Cdh1:APC/C gene set	www.pathwaycomm...
Null Activation of ATR in response to replication stress	View Gene Set	5.161e-06	37	5.652e-05	102	REACTOME - Activation of ATR in response to replication stress gene set	www.pathwaycomm...
Null G2/M DNA damage checkpoint	View Gene Set	5.811e-06	29	6.302e-05	103	REACTOME - G2/M DNA damage checkpoint gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intronless pre-mRNA	View Gene Set	7.974e-06	23	8.428e-05	104	REACTOME - Post-Elongation Processing of Intronless pre-mRNA gene set	www.pathwaycomm...
Null Processing of Capped Intronless Pre-mRNA	View Gene Set	7.974e-06	23	8.428e-05	104	REACTOME - Processing of Capped Intronless Pre-mRNA gene set	www.pathwaycomm...
Null DNA strand elongation	View Gene Set	7.998e-06	31	8.428e-05	104	REACTOME - DNA strand elongation gene set	www.pathwaycomm...
Null Extension of Telomeres	View Gene Set	9.066e-06	28	9.377e-05	107	REACTOME - Extension of Telomeres gene set	www.pathwaycomm...
Null Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins.	View Gene Set	9.028e-06	91	9.377e-05	107	REACTOME - Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. gene set	www.pathwaycomm... ATP synthesis b... and heat produc...
Null Cap-dependent Translation Initiation	View Gene Set	1.02e-05	113	0.0001035	109	REACTOME - Cap-dependent Translation Initiation gene set	www.pathwaycomm...
Null Eukaryotic Translation Initiation	View Gene Set	1.02e-05	113	0.0001035	109	REACTOME - Eukaryotic Translation Initiation gene set	www.pathwaycomm...
Null Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S	View Gene Set	1.297e-05	57	0.0001305	111	REACTOME - Activation of the mRNA upon binding of the cap-binding complex and eIFs and subsequent binding to 43S gene set	www.pathwaycomm... and subsequent ...
Null Regulation of ornithine decarboxylase (ODC)	View Gene Set	1.416e-05	62	0.0001412	112	REACTOME - Regulation of ornithine decarboxylase (ODC) gene set	www.pathwaycomm...
Null p53-Dependent G1/S DNA damage checkpoint	View Gene Set	1.759e-05	64	0.0001724	113	REACTOME - p53-Dependent G1/S DNA damage checkpoint gene set	www.pathwaycomm...
Null p53-Dependent G1 DNA Damage Response	View Gene Set	1.759e-05	64	0.0001724	113	REACTOME - p53-Dependent G1 DNA Damage Response gene set	www.pathwaycomm...
Null Regulation of Apoptosis	View Gene Set	1.929e-05	66	0.0001859	115	REACTOME - Regulation of Apoptosis gene set	www.pathwaycomm...
Null Ribosomal scanning and start codon recognition	View Gene Set	1.931e-05	56	0.0001859	115	REACTOME - Ribosomal scanning and start codon recognition gene set	www.pathwaycomm...
Null Translation initiation complex formation	View Gene Set	2.132e-05	56	0.0002035	117	REACTOME - Translation initiation complex formation gene set	www.pathwaycomm...
Null Citric acid cycle (TCA cycle)	View Gene Set	6.214e-05	19	0.0005882	118	REACTOME - Citric acid cycle (TCA cycle) gene set	www.pathwaycomm...
Null Activation of the pre-replicative complex	View Gene Set	6.274e-05	30	0.000589	119	REACTOME - Activation of the pre-replicative complex gene set	www.pathwaycomm...
Null Homologous Recombination Repair	View Gene Set	7.22e-05	22	0.0006666	120	REACTOME - Homologous Recombination Repair gene set	www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks	View Gene Set	7.22e-05	22	0.0006666	120	REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set	www.pathwaycomm...
Null Nucleotide Excision Repair	View Gene Set	8.018e-05	51	0.0007341	122	REACTOME - Nucleotide Excision Repair gene set	www.pathwaycomm...
Null Pyrimidine biosynthesis	View Gene Set	8.458e-05	6	0.0007681	123	REACTOME - Pyrimidine biosynthesis gene set	www.pathwaycomm...
Null Phosphorylation of the APC/C	View Gene Set	0.000104	26	0.0009366	124	REACTOME - Phosphorylation of the APC/C gene set	www.pathwaycomm...
Null Processing of Intronless Pre-mRNAs	View Gene Set	0.0001049	14	0.0009376	125	REACTOME - Processing of Intronless Pre-mRNAs gene set	www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation From Type 2 Promoter	View Gene Set	0.0001201	20	0.001056	126	REACTOME - RNA Polymerase III Transcription Initiation From Type 2 Promoter gene set	www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation From Type 1 Promoter	View Gene Set	0.0001201	21	0.001056	126	REACTOME - RNA Polymerase III Transcription Initiation From Type 1 Promoter gene set	www.pathwaycomm...
Null Purine ribonucleoside monophosphate biosynthesis	View Gene Set	0.0001302	7	0.001136	128	REACTOME - Purine ribonucleoside monophosphate biosynthesis gene set	www.pathwaycomm...
Null Unwinding of DNA	View Gene Set	0.0001668	11	0.001445	129	REACTOME - Unwinding of DNA gene set	www.pathwaycomm...
Null Double-Strand Break Repair	View Gene Set	0.0001938	27	0.001665	130	REACTOME - Double-Strand Break Repair gene set	www.pathwaycomm...
Null Respiratory electron transport	View Gene Set	0.0002035	76	0.001735	131	REACTOME - Respiratory electron transport gene set	www.pathwaycomm...
Null SCF(Skp2)-mediated degradation of p27/p21	View Gene Set	0.0002071	52	0.001753	132	REACTOME - SCF(Skp2)-mediated degradation of p27/p21 gene set	www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit	View Gene Set	0.0002254	106	0.001893	133	REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set	www.pathwaycomm...
Null Metabolism of nucleotides	View Gene Set	0.0003996	66	0.003331	134	REACTOME - Metabolism of nucleotides gene set	www.pathwaycomm...
Null 3' -UTR-mediated translational regulation	View Gene Set	0.0004187	105	0.003439	135	REACTOME - 3' -UTR-mediated translational regulation gene set	www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression	View Gene Set	0.0004187	105	0.003439	135	REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set	www.pathwaycomm...
Null MicroRNA (miRNA) Biogenesis	View Gene Set	0.0004848	22	0.003924	137	REACTOME - MicroRNA (miRNA) Biogenesis gene set	www.pathwaycomm...
Null Regulatory RNA pathways	View Gene Set	0.0004848	22	0.003924	137	REACTOME - Regulatory RNA pathways gene set	www.pathwaycomm...
Null RNA Polymerase I Chain Elongation	View Gene Set	0.0005552	49	0.004462	139	REACTOME - RNA Polymerase I Chain Elongation gene set	www.pathwaycomm...
Null Formation of tubulin folding intermediates by CCT/TriC	View Gene Set	0.0005955	8	0.004751	140	REACTOME - Formation of tubulin folding intermediates by CCT/TriC gene set	www.pathwaycomm...
Null RNA Polymerase III Transcription Termination	View Gene Set	0.0006131	17	0.004857	141	REACTOME - RNA Polymerase III Transcription Termination gene set	www.pathwaycomm...
Null RNA Polymerase I Transcription	View Gene Set	0.0006303	57	0.004958	142	REACTOME - RNA Polymerase I Transcription gene set	www.pathwaycomm...
Null Deadenylation of mRNA	View Gene Set	0.0007424	22	0.005799	143	REACTOME - Deadenylation of mRNA gene set	www.pathwaycomm...
Null Recycling of eIF2:GDP	View Gene Set	0.0007588	8	0.005886	144	REACTOME - Recycling of eIF2:GDP gene set	www.pathwaycomm...
Null Telomere Extension By Telomerase	View Gene Set	0.0007668	6	0.005907	145	REACTOME - Telomere Extension By Telomerase gene set	www.pathwaycomm...
Null Packaging Of Telomere Ends	View Gene Set	0.0007742	21	0.005923	146	REACTOME - Packaging Of Telomere Ends gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER	View Gene Set	0.0008076	16	0.006014	147	REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER	View Gene Set	0.0008076	16	0.006014	147	REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set	www.pathwaycomm...
Null Removal of DNA patch containing abasic residue	View Gene Set	0.0007989	17	0.006014	147	REACTOME - Removal of DNA patch containing abasic residue gene set	www.pathwaycomm...
Null Resolution of AP sites via the multiple-nucleotide patch replacement pathway	View Gene Set	0.0007989	17	0.006014	147	REACTOME - Resolution of AP sites via the multiple-nucleotide patch replacement pathway gene set	www.pathwaycomm...
Null Telomere C-strand (Lagging Strand) Synthesis	View Gene Set	0.0008145	22	0.006026	151	REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set	www.pathwaycomm...
Null Polo-like kinase mediated events	View Gene Set	0.0008715	10	0.006404	152	REACTOME - Polo-like kinase mediated events gene set	www.pathwaycomm...
Null RNA Polymerase III Transcription	View Gene Set	0.0009869	34	0.007158	153	REACTOME - RNA Polymerase III Transcription gene set	www.pathwaycomm...
Null RNA Polymerase III Abortive And Retractive Initiation	View Gene Set	0.0009869	34	0.007158	153	REACTOME - RNA Polymerase III Abortive And Retractive Initiation gene set	www.pathwaycomm...
Null Cyclin A:Cdk2-associated events at S phase entry	View Gene Set	0.001099	62	0.007919	155	REACTOME - Cyclin A:Cdk2-associated events at S phase entry gene set	www.pathwaycomm...
Null Transcription-coupled NER (TC-NER)	View Gene Set	0.001146	45	0.008157	156	REACTOME - Transcription-coupled NER (TC-NER) gene set	www.pathwaycomm...
Null Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase	View Gene Set	0.00114	16	0.008157	156	REACTOME - Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase gene set	www.pathwaycomm...
Null MRN complex relocalizes to nuclear foci	View Gene Set	0.001238	4	0.008644	158	REACTOME - MRN complex relocalizes to nuclear foci gene set	www.pathwaycomm...
Null Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks	View Gene Set	0.001238	4	0.008644	158	REACTOME - Assembly of the RAD50-MRE11-NBS1 complex at DNA double-strand breaks gene set	www.pathwaycomm...
Null mRNA Decay by 3' to 5' Exoribonuclease	View Gene Set	0.001231	11	0.008644	158	REACTOME - mRNA Decay by 3' to 5' Exoribonuclease gene set	www.pathwaycomm...
Null Formation of the ternary complex and subsequently the 43S complex	View Gene Set	0.001386	49	0.009614	161	REACTOME - Formation of the ternary complex and subsequently the 43S complex gene set	www.pathwaycomm... and subsequentl... the 43S complex...
Null RNA Polymerase I Promoter Clearance	View Gene Set	0.00143	55	0.00986	162	REACTOME - RNA Polymerase I Promoter Clearance gene set	www.pathwaycomm...
Null RNA Polymerase I Promoter Opening	View Gene Set	0.001559	31	0.01037	163	REACTOME - RNA Polymerase I Promoter Opening gene set	www.pathwaycomm...
Null ATM mediated phosphorylation of repair proteins	View Gene Set	0.001559	6	0.01037	163	REACTOME - ATM mediated phosphorylation of repair proteins gene set	www.pathwaycomm...
Null ATM mediated response to DNA double-strand break	View Gene Set	0.001559	6	0.01037	163	REACTOME - ATM mediated response to DNA double-strand break gene set	www.pathwaycomm...
Null Base Excision Repair	View Gene Set	0.001545	19	0.01037	163	REACTOME - Base Excision Repair gene set	www.pathwaycomm...
Null Resolution of Abasic Sites (AP sites)	View Gene Set	0.001545	19	0.01037	163	REACTOME - Resolution of Abasic Sites (AP sites) gene set	www.pathwaycomm...
Null Mitotic Telophase /Cytokinesis	View Gene Set	0.001549	10	0.01037	163	REACTOME - Mitotic Telophase /Cytokinesis gene set	www.pathwaycomm...
Null Mitotic Spindle Checkpoint	View Gene Set	0.001593	19	0.01053	169	REACTOME - Mitotic Spindle Checkpoint gene set	www.pathwaycomm...
Null Recruitment of repair and signaling proteins to double-strand breaks	View Gene Set	0.002149	8	0.01412	170	REACTOME - Recruitment of repair and signaling proteins to double-strand breaks gene set	www.pathwaycomm...
Null Lysine catabolism	View Gene Set	0.00217	8	0.01417	171	REACTOME - Lysine catabolism gene set	www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER	View Gene Set	0.002394	15	0.01546	172	REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set	www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase	View Gene Set	0.002394	15	0.01546	172	REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set	www.pathwaycomm...
Null Pyrimidine metabolism	View Gene Set	0.002748	23	0.01764	174	REACTOME - Pyrimidine metabolism gene set	www.pathwaycomm...
Null Pyruvate metabolism	View Gene Set	0.002924	10	0.01828	175	REACTOME - Pyruvate metabolism gene set	www.pathwaycomm...
Null Mitochondrial transcription initiation	View Gene Set	0.002929	3	0.01828	175	REACTOME - Mitochondrial transcription initiation gene set	www.pathwaycomm...
Null Association of TriC/CCT with target proteins during biosynthesis	View Gene Set	0.002875	9	0.01828	175	REACTOME - Association of TriC/CCT with target proteins during biosynthesis gene set	www.pathwaycomm...
Null Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components	View Gene Set	0.002902	18	0.01828	175	REACTOME - Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components gene set	www.pathwaycomm...
Null Inactivation of APC/C via direct inhibition of the APC/C complex	View Gene Set	0.002902	18	0.01828	175	REACTOME - Inactivation of APC/C via direct inhibition of the APC/C complex gene set	www.pathwaycomm...
Null Global Genomic NER (GG-NER)	View Gene Set	0.00295	35	0.01831	180	REACTOME - Global Genomic NER (GG-NER) gene set	www.pathwaycomm...
Null Cyclin E associated events during G1/S transition	View Gene Set	0.003162	64	0.01951	181	REACTOME - Cyclin E associated events during G1/S transition gene set	www.pathwaycomm...
Null mTORC1-mediated signalling	View Gene Set	0.003341	11	0.02051	182	REACTOME - mTORC1-mediated signalling gene set	www.pathwaycomm...
Null SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs	View Gene Set	0.003633	11	0.02217	183	REACTOME - SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs gene set	www.pathwaycomm...
Null Lagging Strand Synthesis	View Gene Set	0.0038	20	0.02307	184	REACTOME - Lagging Strand Synthesis gene set	www.pathwaycomm...
Null Abortive elongation of HIV-1 transcript in the absence of Tat	View Gene Set	0.004035	22	0.02436	185	REACTOME - Abortive elongation of HIV-1 transcript in the absence of Tat gene set	www.pathwaycomm...
Null Transcription from mitochondrial promoters	View Gene Set	0.004437	4	0.02665	186	REACTOME - Transcription from mitochondrial promoters gene set	www.pathwaycomm...
Null RNA Polymerase III Chain Elongation	View Gene Set	0.004523	12	0.02702	187	REACTOME - RNA Polymerase III Chain Elongation gene set	www.pathwaycomm...
Null SLBP independent Processing of Histone Pre-mRNAs	View Gene Set	0.004752	10	0.02809	188	REACTOME - SLBP independent Processing of Histone Pre-mRNAs gene set	www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere	View Gene Set	0.004752	11	0.02809	188	REACTOME - Processive synthesis on the C-strand of the telomere gene set	www.pathwaycomm...
Null Formation of ATP by chemiosmotic coupling	View Gene Set	0.004818	15	0.02833	190	REACTOME - Formation of ATP by chemiosmotic coupling gene set	www.pathwaycomm...
Null Regulation of pyruvate dehydrogenase (PDH) complex	View Gene Set	0.005194	9	0.03038	191	REACTOME - Regulation of pyruvate dehydrogenase (PDH) complex gene set	www.pathwaycomm...
Null Folding of actin by CCT/TriC	View Gene Set	0.005441	9	0.03165	192	REACTOME - Folding of actin by CCT/TriC gene set	www.pathwaycomm...
Null RNA Polymerase III Transcription Initiation	View Gene Set	0.005494	29	0.0318	193	REACTOME - RNA Polymerase III Transcription Initiation gene set	www.pathwaycomm...
Null NS1 Mediated Effects on Host Pathways	View Gene Set	0.005764	3	0.03319	194	REACTOME - NS1 Mediated Effects on Host Pathways gene set	www.pathwaycomm...
Null Phosphorylation of Emi1	View Gene Set	0.005974	12	0.03422	195	REACTOME - Phosphorylation of Emi1 gene set	www.pathwaycomm...
Null Displacement of DNA glycosylase by APE1	View Gene Set	0.006546	9	0.0373	196	REACTOME - Displacement of DNA glycosylase by APE1 gene set	www.pathwaycomm...
Null mRNA Decay by 5' to 3' Exoribonuclease	View Gene Set	0.006894	13	0.03909	197	REACTOME - mRNA Decay by 5' to 3' Exoribonuclease gene set	www.pathwaycomm...
Null Release of eIF4E	View Gene Set	0.00753	7	0.04248	198	REACTOME - Release of eIF4E gene set	www.pathwaycomm...
Null Vitamin B5 (pantothenate) metabolism	View Gene Set	0.007722	9	0.04334	199	REACTOME - Vitamin B5 (pantothenate) metabolism gene set	www.pathwaycomm...
Null Prefoldin mediated transfer of substrate to CCT/TriC	View Gene Set	0.008157	14	0.04556	200	REACTOME - Prefoldin mediated transfer of substrate to CCT/TriC gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-146b-3p	View Gene Set	4.458e-06	695	0.00219	1	microRNA targets for hsa-miR-146b-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-874	View Gene Set	6.16e-06	722	0.00219	1	microRNA targets for hsa-miR-874 from mirbase.targets	www.mirbase.org...
Null hsa-miR-383	View Gene Set	4.763e-05	748	0.007261	3	microRNA targets for hsa-miR-383 from mirbase.targets	www.mirbase.org...
Null hsa-miR-503	View Gene Set	8.17e-05	748	0.007261	3	microRNA targets for hsa-miR-503 from mirbase.targets	www.mirbase.org...
Null hsa-miR-671-3p	View Gene Set	8.097e-05	767	0.007261	3	microRNA targets for hsa-miR-671-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-886-5p	View Gene Set	6.942e-05	793	0.007261	3	microRNA targets for hsa-miR-886-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-923	View Gene Set	4.181e-05	690	0.007261	3	microRNA targets for hsa-miR-923 from mirbase.targets	www.mirbase.org...
Null hsa-miR-99b	View Gene Set	8.075e-05	708	0.007261	3	microRNA targets for hsa-miR-99b from mirbase.targets	www.mirbase.org...
Null hsa-miR-424	View Gene Set	0.0001121	772	0.008854	9	microRNA targets for hsa-miR-424 from mirbase.targets	www.mirbase.org...
Null hsa-miR-635	View Gene Set	0.0002661	648	0.01892	10	microRNA targets for hsa-miR-635 from mirbase.targets	www.mirbase.org...
Null hsa-miR-634	View Gene Set	0.0003624	714	0.02342	11	microRNA targets for hsa-miR-634 from mirbase.targets	www.mirbase.org...
Null hsa-let-7f	View Gene Set	0.0005999	753	0.03171	12	microRNA targets for hsa-let-7f from mirbase.targets	www.mirbase.org...
Null hsa-miR-331-3p	View Gene Set	0.0006243	712	0.03171	12	microRNA targets for hsa-miR-331-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-455-3p	View Gene Set	0.0006048	824	0.03171	12	microRNA targets for hsa-miR-455-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	0.0006835	773	0.0324	15	microRNA targets for hsa-miR-486-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-29a	View Gene Set	0.0007589	828	0.03372	16	microRNA targets for hsa-miR-29a from mirbase.targets	www.mirbase.org...
Null hsa-miR-345	View Gene Set	0.001081	696	0.04519	17	microRNA targets for hsa-miR-345 from mirbase.targets	www.mirbase.org...
Null hsa-miR-208	View Gene Set	0.001238	664	0.04889	18	microRNA targets for hsa-miR-208 from mirbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-let-7b	View Gene Set	0.001226	83	0.03779	1	microRNA targets for hsa-let-7b from tarbase.targets	www.mirbase.org...
Null hsa-miR-16	View Gene Set	0.001482	91	0.03779	1	microRNA targets for hsa-miR-16 from tarbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null V_E2F_02	View Gene Set	1.962e-06	134	0.000418	1	List of genes containing a conserved (FDR < 0.1%) V$E2F_02 TFBS located within 3 kb around the TSS for the E2F transcription factor	www.gene-regula...
Null V_MYCMAX_01	View Gene Set	0.0001154	136	0.01175	2	List of genes containing a conserved (FDR < 0.1%) V$MYCMAX_01 TFBS located within 3 kb around the TSS for the c-Myc transcription factor	www.gene-regula...
Null V_NFY_C	View Gene Set	0.0001655	17	0.01175	2	List of genes containing a conserved (FDR < 0.1%) V$NFY_C TFBS located within 3 kb around the TSS for the CP1A transcription factor	www.gene-regula...

Results

AFA results for: tVPAda4PC3

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: tarbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down