Results

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Go to: Gene Set Collection: KEGG
Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c2.CGP
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Go to: Gene Set Collection: Broad.c2.CP.BIOCARTA
Go to: Gene Set Collection: Broad.c2.CP.KEGG
Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c3.MIR
Go to: Gene Set Collection: Broad.c3.TFT
Go to: Gene Set Collection: Broad.c4.CGN
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: Broad.c5.CC
Go to: Gene Set Collection: Broad.c5.MF
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: Enzyme
Go to: Gene Set Collection: ppi.BIND
Go to: Gene Set Collection: ppi.BioGRID
Go to: Gene Set Collection: ppi.HPRD
Go to: Gene Set Collection: ppi.anyDB
Go to: Gene Set Collection: pathwayCommons.cell-map
Go to: Gene Set Collection: pathwayCommons.humancyc
Go to: Gene Set Collection: pathwayCommons.nci-nature
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: mirbase.targets
Go to: Gene Set Collection: pictar.targets
Go to: Gene Set Collection: tarbase.targets
Go to: Gene Set Collection: targetscan.targets
Go to: Gene Set Collection: miRNAtargetIntersection
Go to: Gene Set Collection: miRNAtargetUnion
Go to: Gene Set Collection: hprdBatch.UP
Go to: Gene Set Collection: hprdBatch.DOWN
Go to: Gene Set Collection: hprdBatch.DIFFERENT
Go to: Gene Set Collection: hprdManual.UP
Go to: Gene Set Collection: hprdManual.DOWN
Go to: Gene Set Collection: hprdManual.DIFFERENT
Go to: Gene Set Collection: tfbsK3Z3

AFA results for: TSAvsControl

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 03010 View Gene Set 1.015e-18 88 2.173e-16 1 Ribosome www.genome.jp/d...
KEGG 01100 View Gene Set 4.68e-11 1120 3.339e-09 2 Metabolic pathways www.genome.jp/d...
KEGG 04141 View Gene Set 3.53e-11 167 3.339e-09 2 Protein processing in endoplasmic reticulum www.genome.jp/d...
KEGG 03040 View Gene Set 8.238e-09 128 4.407e-07 4 Spliceosome www.genome.jp/d...
KEGG 04110 View Gene Set 1.497e-06 128 6.408e-05 5 Cell cycle www.genome.jp/d...
KEGG 05010 View Gene Set 2.219e-06 168 6.787e-05 6 Alzheimer's disease www.genome.jp/d...
KEGG 05012 View Gene Set 2.22e-06 132 6.787e-05 6 Parkinson's disease www.genome.jp/d...
KEGG 00670 View Gene Set 1.905e-05 17 0.0005095 8 One carbon pool by folate www.genome.jp/d...
KEGG 00030 View Gene Set 2.914e-05 27 0.0005669 9 Pentose phosphate pathway www.genome.jp/d...
KEGG 03050 View Gene Set 2.574e-05 48 0.0005669 9 Proteasome www.genome.jp/d...
KEGG 05220 View Gene Set 2.706e-05 73 0.0005669 9 Chronic myeloid leukemia www.genome.jp/d...
KEGG 00190 View Gene Set 6.215e-05 134 0.001108 12 Oxidative phosphorylation www.genome.jp/d...
KEGG 03060 View Gene Set 8.56e-05 24 0.001409 13 Protein export www.genome.jp/d...
KEGG 05130 View Gene Set 0.0001123 59 0.001716 14 Pathogenic Escherichia coli infection www.genome.jp/d...
KEGG 04114 View Gene Set 0.0001538 114 0.002194 15 Oocyte meiosis www.genome.jp/d...
KEGG 05212 View Gene Set 0.0001872 70 0.002503 16 Pancreatic cancer www.genome.jp/d...
KEGG 05100 View Gene Set 0.0003296 73 0.004149 17 Bacterial invasion of epithelial cells www.genome.jp/d...
KEGG 00480 View Gene Set 0.0005425 50 0.006239 18 Glutathione metabolism www.genome.jp/d...
KEGG 04120 View Gene Set 0.000583 139 0.006239 18 Ubiquitin mediated proteolysis www.genome.jp/d...
KEGG 05131 View Gene Set 0.0005731 64 0.006239 18 Shigellosis www.genome.jp/d...
KEGG 00240 View Gene Set 0.000734 99 0.00748 21 Pyrimidine metabolism www.genome.jp/d...
KEGG 00010 View Gene Set 0.0008044 64 0.007825 22 Glycolysis / Gluconeogenesis www.genome.jp/d...
KEGG 05210 View Gene Set 0.0009694 62 0.00902 23 Colorectal cancer www.genome.jp/d...
KEGG 00510 View Gene Set 0.001086 48 0.009681 24 N-Glycan biosynthesis www.genome.jp/d...
KEGG 00310 View Gene Set 0.001152 46 0.009863 25 Lysine degradation www.genome.jp/d...
KEGG 05219 View Gene Set 0.001522 42 0.01252 26 Bladder cancer www.genome.jp/d...
KEGG 04115 View Gene Set 0.002084 69 0.01592 27 p53 signaling pathway www.genome.jp/d...
KEGG 04914 View Gene Set 0.002038 87 0.01592 27 Progesterone-mediated oocyte maturation www.genome.jp/d...
KEGG 05200 View Gene Set 0.002568 328 0.01895 29 Pathways in cancer www.genome.jp/d...
KEGG 00052 View Gene Set 0.003124 26 0.02157 30 Galactose metabolism www.genome.jp/d...
KEGG 05223 View Gene Set 0.003078 54 0.02157 30 Non-small cell lung cancer www.genome.jp/d...
KEGG 00230 View Gene Set 0.003285 161 0.02197 32 Purine metabolism www.genome.jp/d...
KEGG 00270 View Gene Set 0.003745 34 0.0224 33 Cysteine and methionine metabolism www.genome.jp/d...
KEGG 03420 View Gene Set 0.003494 44 0.0224 33 Nucleotide excision repair www.genome.jp/d...
KEGG 04910 View Gene Set 0.003769 137 0.0224 33 Insulin signaling pathway www.genome.jp/d...
KEGG 05016 View Gene Set 0.003731 184 0.0224 33 Huntington's disease www.genome.jp/d...
KEGG 00020 View Gene Set 0.005161 31 0.02985 37 Citrate cycle (TCA cycle) www.genome.jp/d...
KEGG 04722 View Gene Set 0.005392 126 0.03036 38 Neurotrophin signaling pathway www.genome.jp/d...
KEGG 00290 View Gene Set 0.005899 11 0.03237 39 Valine leucine and isoleucine biosynthesis www.genome.jp/d...
KEGG 00620 View Gene Set 0.007923 40 0.04239 40 Pyruvate metabolism www.genome.jp/d...
KEGG 04150 View Gene Set 0.008412 52 0.04391 41 mTOR signaling pathway www.genome.jp/d...
KEGG 00630 View Gene Set 0.00905 16 0.04611 42 Glyoxylate and dicarboxylate metabolism www.genome.jp/d...
KEGG 05110 View Gene Set 0.009498 56 0.04727 43 Vibrio cholerae infection www.genome.jp/d...
KEGG 05214 View Gene Set 0.009719 65 0.04727 43 Glioma www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0005622 View Gene Set 2.178e-92 11329 2.91e-88 1 intracellular amigo.geneontol...
GO GO:0044424 View Gene Set 6.724e-92 10976 4.492e-88 2 intracellular part amigo.geneontol...
GO GO:0005737 View Gene Set 1.985e-87 7676 8.84e-84 3 cytoplasm amigo.geneontol...
GO GO:0043229 View Gene Set 3.918e-67 9346 1.309e-63 4 intracellular organelle amigo.geneontol...
GO GO:0043226 View Gene Set 8.786e-67 9360 2.348e-63 5 organelle amigo.geneontol...
GO GO:0043227 View Gene Set 1.011e-65 8383 2.252e-62 6 membrane-bounded organelle amigo.geneontol...
GO GO:0043231 View Gene Set 2.377e-65 8376 4.536e-62 7 intracellular membrane-bounded organelle amigo.geneontol...
GO GO:0044444 View Gene Set 3.919e-62 5184 6.544e-59 8 cytoplasmic part amigo.geneontol...
GO GO:0044422 View Gene Set 4.193e-49 5089 5.602e-46 9 organelle part amigo.geneontol...
GO GO:0044446 View Gene Set 3.871e-49 5019 5.602e-46 9 intracellular organelle part amigo.geneontol...
GO GO:0005515 View Gene Set 2.32e-45 8146 2.818e-42 11 protein binding amigo.geneontol...
GO GO:0009987 View Gene Set 1.788e-42 11620 1.991e-39 12 cellular process amigo.geneontol...
GO GO:0030529 View Gene Set 5.226e-41 504 5.371e-38 13 ribonucleoprotein complex amigo.geneontol...
GO GO:0032991 View Gene Set 2.102e-40 3237 2.006e-37 14 macromolecular complex amigo.geneontol...
GO GO:0005623 View Gene Set 1.407e-37 15067 1.175e-34 15 cell amigo.geneontol...
GO GO:0044464 View Gene Set 1.351e-37 15066 1.175e-34 15 cell part amigo.geneontol...
GO GO:0005739 View Gene Set 4.138e-35 1274 3.252e-32 17 mitochondrion amigo.geneontol...
GO GO:0044237 View Gene Set 4.36e-33 7431 3.236e-30 18 cellular metabolic process amigo.geneontol...
GO GO:0005488 View Gene Set 2.829e-32 12334 1.989e-29 19 binding amigo.geneontol...
GO GO:0003723 View Gene Set 5.98e-32 732 3.995e-29 20 RNA binding amigo.geneontol...
GO GO:0044428 View Gene Set 1.687e-31 1938 1.073e-28 21 nuclear part amigo.geneontol...
GO GO:0070013 View Gene Set 3.231e-31 1845 1.962e-28 22 intracellular organelle lumen amigo.geneontol...
GO GO:0005840 View Gene Set 4.996e-31 198 2.781e-28 23 ribosome amigo.geneontol...
GO GO:0031974 View Gene Set 4.931e-31 1917 2.781e-28 23 membrane-enclosed lumen amigo.geneontol...
GO GO:0008152 View Gene Set 1.544e-30 8439 8.249e-28 25 metabolic process amigo.geneontol...
GO GO:0005829 View Gene Set 1.978e-30 1323 1.016e-27 26 cytosol amigo.geneontol...
GO GO:0043233 View Gene Set 1.416e-29 1881 7.005e-27 27 organelle lumen amigo.geneontol...
GO GO:0006412 View Gene Set 2.473e-28 412 1.18e-25 28 translation amigo.geneontol...
GO GO:0043228 View Gene Set 3.988e-27 2690 1.776e-24 29 non-membrane-bounded organelle amigo.geneontol...
GO GO:0043232 View Gene Set 3.988e-27 2690 1.776e-24 29 intracellular non-membrane-bounded organelle amigo.geneontol...
GO GO:0005634 View Gene Set 6.102e-27 5198 2.63e-24 31 nucleus amigo.geneontol...
GO GO:0044238 View Gene Set 4.299e-26 7629 1.795e-23 32 primary metabolic process amigo.geneontol...
GO GO:0005575 View Gene Set 4.798e-26 16391 1.942e-23 33 cellular_component amigo.geneontol...
GO GO:0003735 View Gene Set 1.016e-24 158 3.991e-22 34 structural constituent of ribosome amigo.geneontol...
GO GO:0031981 View Gene Set 1.635e-24 1518 6.242e-22 35 nuclear lumen amigo.geneontol...
GO GO:0044260 View Gene Set 1.645e-22 5699 6.103e-20 36 cellular macromolecule metabolic process amigo.geneontol...
GO GO:0044267 View Gene Set 1.374e-21 2465 4.96e-19 37 cellular protein metabolic process amigo.geneontol...
GO GO:0003824 View Gene Set 3.024e-21 5198 1.063e-18 38 catalytic activity amigo.geneontol...
GO GO:0033279 View Gene Set 1.111e-20 121 3.806e-18 39 ribosomal subunit amigo.geneontol...
GO GO:0043170 View Gene Set 3.806e-20 6274 1.271e-17 40 macromolecule metabolic process amigo.geneontol...
GO GO:0008150 View Gene Set 8.654e-20 14318 2.82e-17 41 biological_process amigo.geneontol...
GO GO:0003674 View Gene Set 1.238e-19 15462 3.939e-17 42 molecular_function amigo.geneontol...
GO GO:0043234 View Gene Set 1.912e-19 2680 5.942e-17 43 protein complex amigo.geneontol...
GO GO:0006414 View Gene Set 2.146e-19 104 6.515e-17 44 translational elongation amigo.geneontol...
GO GO:0000166 View Gene Set 2.717e-19 2257 8.066e-17 45 nucleotide binding amigo.geneontol...
GO GO:0019538 View Gene Set 1.569e-18 2935 4.556e-16 46 protein metabolic process amigo.geneontol...
GO GO:0006396 View Gene Set 9.305e-18 578 2.645e-15 47 RNA processing amigo.geneontol...
GO GO:0031090 View Gene Set 5.177e-16 1905 1.441e-13 48 organelle membrane amigo.geneontol...
GO GO:0005730 View Gene Set 8.418e-16 734 2.295e-13 49 nucleolus amigo.geneontol...
GO GO:0031967 View Gene Set 8.688e-16 672 2.321e-13 50 organelle envelope amigo.geneontol...
GO GO:0016043 View Gene Set 1.919e-15 2937 5.027e-13 51 cellular component organization amigo.geneontol...
GO GO:0022626 View Gene Set 2.087e-15 75 5.363e-13 52 cytosolic ribosome amigo.geneontol...
GO GO:0006996 View Gene Set 3.118e-15 1501 7.751e-13 53 organelle organization amigo.geneontol...
GO GO:0044445 View Gene Set 3.133e-15 148 7.751e-13 53 cytosolic part amigo.geneontol...
GO GO:0008380 View Gene Set 3.981e-15 300 9.671e-13 55 RNA splicing amigo.geneontol...
GO GO:0010467 View Gene Set 4.088e-15 3806 9.753e-13 56 gene expression amigo.geneontol...
GO GO:0031975 View Gene Set 7.181e-15 685 1.683e-12 57 envelope amigo.geneontol...
GO GO:0005654 View Gene Set 9.303e-15 939 2.143e-12 58 nucleoplasm amigo.geneontol...
GO GO:0046907 View Gene Set 2.371e-14 753 5.369e-12 59 intracellular transport amigo.geneontol...
GO GO:0044429 View Gene Set 4.373e-14 619 9.737e-12 60 mitochondrial part amigo.geneontol...
GO GO:0007049 View Gene Set 3.529e-13 1006 7.729e-11 61 cell cycle amigo.geneontol...
GO GO:0015934 View Gene Set 9.569e-13 64 2.062e-10 62 large ribosomal subunit amigo.geneontol...
GO GO:0016071 View Gene Set 2.421e-12 381 5.053e-10 63 mRNA metabolic process amigo.geneontol...
GO GO:0044265 View Gene Set 2.397e-12 479 5.053e-10 63 cellular macromolecule catabolic process amigo.geneontol...
GO GO:0034641 View Gene Set 4.384e-12 4584 9.011e-10 65 cellular nitrogen compound metabolic process amigo.geneontol...
GO GO:0022613 View Gene Set 1.466e-11 194 2.968e-09 66 ribonucleoprotein complex biogenesis amigo.geneontol...
GO GO:0006397 View Gene Set 1.58e-11 317 3.151e-09 67 mRNA processing amigo.geneontol...
GO GO:0006807 View Gene Set 2.184e-11 4698 4.291e-09 68 nitrogen compound metabolic process amigo.geneontol...
GO GO:0005198 View Gene Set 2.734e-11 606 5.294e-09 69 structural molecule activity amigo.geneontol...
GO GO:0017076 View Gene Set 3.271e-11 1934 6.243e-09 70 purine nucleotide binding amigo.geneontol...
GO GO:0005740 View Gene Set 3.793e-11 444 7.137e-09 71 mitochondrial envelope amigo.geneontol...
GO GO:0044249 View Gene Set 3.959e-11 4326 7.346e-09 72 cellular biosynthetic process amigo.geneontol...
GO GO:0032553 View Gene Set 5.015e-11 1851 9.055e-09 73 ribonucleotide binding amigo.geneontol...
GO GO:0032555 View Gene Set 5.015e-11 1851 9.055e-09 73 purine ribonucleotide binding amigo.geneontol...
GO GO:0009058 View Gene Set 7.01e-11 4436 1.249e-08 75 biosynthetic process amigo.geneontol...
GO GO:0044085 View Gene Set 9.454e-11 1167 1.662e-08 76 cellular component biogenesis amigo.geneontol...
GO GO:0015935 View Gene Set 1.472e-10 59 2.555e-08 77 small ribosomal subunit amigo.geneontol...
GO GO:0009057 View Gene Set 2.108e-10 570 3.61e-08 78 macromolecule catabolic process amigo.geneontol...
GO GO:0051641 View Gene Set 2.196e-10 1206 3.714e-08 79 cellular localization amigo.geneontol...
GO GO:0031966 View Gene Set 2.243e-10 420 3.746e-08 80 mitochondrial membrane amigo.geneontol...
GO GO:0006139 View Gene Set 2.753e-10 4294 4.532e-08 81 nucleobase nucleoside nucleotide and nucleic acid metabolic process amigo.geneontol...
GO GO:0030554 View Gene Set 2.782e-10 1584 4.532e-08 81 adenyl nucleotide binding amigo.geneontol...
GO GO:0012505 View Gene Set 3.323e-10 1454 5.349e-08 83 endomembrane system amigo.geneontol...
GO GO:0032559 View Gene Set 4.154e-10 1503 6.606e-08 84 adenyl ribonucleotide binding amigo.geneontol...
GO GO:0005524 View Gene Set 6.339e-10 1480 9.963e-08 85 ATP binding amigo.geneontol...
GO GO:0051649 View Gene Set 8.306e-10 1116 1.29e-07 86 establishment of localization in cell amigo.geneontol...
GO GO:0044248 View Gene Set 9.868e-10 1005 1.498e-07 87 cellular catabolic process amigo.geneontol...
GO GO:0042802 View Gene Set 9.856e-10 697 1.498e-07 87 identical protein binding amigo.geneontol...
GO GO:0030530 View Gene Set 1.069e-09 17 1.605e-07 89 heterogeneous nuclear ribonucleoprotein complex amigo.geneontol...
GO GO:0044451 View Gene Set 1.218e-09 600 1.809e-07 90 nucleoplasm part amigo.geneontol...
GO GO:0044432 View Gene Set 2.393e-09 689 3.513e-07 91 endoplasmic reticulum part amigo.geneontol...
GO GO:0051603 View Gene Set 2.485e-09 346 3.609e-07 92 proteolysis involved in cellular protein catabolic process amigo.geneontol...
GO GO:0016265 View Gene Set 2.69e-09 1253 3.823e-07 93 death amigo.geneontol...
GO GO:0071212 View Gene Set 2.665e-09 723 3.823e-07 93 subsynaptic reticulum amigo.geneontol...
GO GO:0008219 View Gene Set 2.836e-09 1250 3.938e-07 95 cell death amigo.geneontol...
GO GO:0019941 View Gene Set 2.859e-09 302 3.938e-07 95 modification-dependent protein catabolic process amigo.geneontol...
GO GO:0043632 View Gene Set 2.859e-09 302 3.938e-07 95 modification-dependent macromolecule catabolic process amigo.geneontol...
GO GO:0042254 View Gene Set 3.266e-09 130 4.452e-07 98 ribosome biogenesis amigo.geneontol...
GO GO:0090304 View Gene Set 3.36e-09 3724 4.535e-07 99 nucleic acid metabolic process amigo.geneontol...
GO GO:0001883 View Gene Set 3.847e-09 1620 5.139e-07 100 purine nucleoside binding amigo.geneontol...
GO GO:0006511 View Gene Set 5.092e-09 296 6.736e-07 101 ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0044257 View Gene Set 5.163e-09 349 6.762e-07 102 cellular protein catabolic process amigo.geneontol...
GO GO:0033036 View Gene Set 8.285e-09 1256 1.075e-06 103 macromolecule localization amigo.geneontol...
GO GO:0005783 View Gene Set 9.983e-09 1024 1.282e-06 104 endoplasmic reticulum amigo.geneontol...
GO GO:0001882 View Gene Set 1.048e-08 1630 1.334e-06 105 nucleoside binding amigo.geneontol...
GO GO:0000278 View Gene Set 1.094e-08 489 1.379e-06 106 mitotic cell cycle amigo.geneontol...
GO GO:0010498 View Gene Set 1.107e-08 166 1.382e-06 107 proteasomal protein catabolic process amigo.geneontol...
GO GO:0042175 View Gene Set 1.234e-08 637 1.527e-06 108 nuclear membrane-endoplasmic reticulum network amigo.geneontol...
GO GO:0003676 View Gene Set 1.345e-08 2979 1.648e-06 109 nucleic acid binding amigo.geneontol...
GO GO:0043933 View Gene Set 1.37e-08 836 1.664e-06 110 macromolecular complex subunit organization amigo.geneontol...
GO GO:0005789 View Gene Set 1.392e-08 622 1.676e-06 111 endoplasmic reticulum membrane amigo.geneontol...
GO GO:0006259 View Gene Set 1.576e-08 592 1.864e-06 112 DNA metabolic process amigo.geneontol...
GO GO:0022625 View Gene Set 1.576e-08 36 1.864e-06 112 cytosolic large ribosomal subunit amigo.geneontol...
GO GO:0012501 View Gene Set 1.607e-08 1141 1.873e-06 114 programmed cell death amigo.geneontol...
GO GO:0030163 View Gene Set 1.612e-08 398 1.873e-06 114 protein catabolic process amigo.geneontol...
GO GO:0043161 View Gene Set 1.862e-08 162 2.145e-06 116 proteasomal ubiquitin-dependent protein catabolic process amigo.geneontol...
GO GO:0009056 View Gene Set 1.887e-08 1255 2.155e-06 117 catabolic process amigo.geneontol...
GO GO:0015031 View Gene Set 2.308e-08 888 2.613e-06 118 protein transport amigo.geneontol...
GO GO:0034645 View Gene Set 2.556e-08 3529 2.869e-06 119 cellular macromolecule biosynthetic process amigo.geneontol...
GO GO:0009059 View Gene Set 2.746e-08 3597 3.032e-06 120 macromolecule biosynthetic process amigo.geneontol...
GO GO:0019866 View Gene Set 2.745e-08 334 3.032e-06 120 organelle inner membrane amigo.geneontol...
GO GO:0006915 View Gene Set 2.89e-08 1133 3.165e-06 122 apoptosis amigo.geneontol...
GO GO:0065003 View Gene Set 3.015e-08 763 3.248e-06 123 macromolecular complex assembly amigo.geneontol...
GO GO:0022627 View Gene Set 3.01e-08 36 3.248e-06 123 cytosolic small ribosomal subunit amigo.geneontol...
GO GO:0045184 View Gene Set 3.135e-08 904 3.351e-06 125 establishment of protein localization amigo.geneontol...
GO GO:0015630 View Gene Set 3.893e-08 587 4.127e-06 126 microtubule cytoskeleton amigo.geneontol...
GO GO:0006886 View Gene Set 4.225e-08 439 4.444e-06 127 intracellular protein transport amigo.geneontol...
GO GO:0034621 View Gene Set 4.353e-08 458 4.544e-06 128 cellular macromolecular complex subunit organization amigo.geneontol...
GO GO:0005681 View Gene Set 5.27e-08 135 5.458e-06 129 spliceosomal complex amigo.geneontol...
GO GO:0008565 View Gene Set 6.171e-08 85 6.342e-06 130 protein transporter activity amigo.geneontol...
GO GO:0008135 View Gene Set 6.34e-08 86 6.466e-06 131 translation factor activity nucleic acid binding amigo.geneontol...
GO GO:0000375 View Gene Set 6.725e-08 106 6.806e-06 132 RNA splicing via transesterification reactions amigo.geneontol...
GO GO:0051179 View Gene Set 6.975e-08 3376 7.007e-06 133 localization amigo.geneontol...
GO GO:0022402 View Gene Set 7.811e-08 676 7.787e-06 134 cell cycle process amigo.geneontol...
GO GO:0000377 View Gene Set 9.056e-08 97 8.896e-06 135 RNA splicing via transesterification reactions with bulged adenosine as nucleophile amigo.geneontol...
GO GO:0000398 View Gene Set 9.056e-08 97 8.896e-06 135 nuclear mRNA splicing via spliceosome amigo.geneontol...
GO GO:0044419 View Gene Set 9.978e-08 343 9.73e-06 137 interspecies interaction between organisms amigo.geneontol...
GO GO:0008104 View Gene Set 1.044e-07 1048 1.01e-05 138 protein localization amigo.geneontol...
GO GO:0051246 View Gene Set 1.248e-07 652 1.199e-05 139 regulation of protein metabolic process amigo.geneontol...
GO GO:0031324 View Gene Set 1.589e-07 809 1.516e-05 140 negative regulation of cellular metabolic process amigo.geneontol...
GO GO:0033554 View Gene Set 1.681e-07 698 1.593e-05 141 cellular response to stress amigo.geneontol...
GO GO:0016491 View Gene Set 1.697e-07 689 1.596e-05 142 oxidoreductase activity amigo.geneontol...
GO GO:0005743 View Gene Set 1.719e-07 305 1.606e-05 143 mitochondrial inner membrane amigo.geneontol...
GO GO:0006091 View Gene Set 2.329e-07 339 2.161e-05 144 generation of precursor metabolites and energy amigo.geneontol...
GO GO:0048523 View Gene Set 2.397e-07 1895 2.208e-05 145 negative regulation of cellular process amigo.geneontol...
GO GO:0005759 View Gene Set 2.644e-07 223 2.403e-05 146 mitochondrial matrix amigo.geneontol...
GO GO:0031980 View Gene Set 2.644e-07 223 2.403e-05 146 mitochondrial lumen amigo.geneontol...
GO GO:0044281 View Gene Set 2.923e-07 1698 2.638e-05 148 small molecule metabolic process amigo.geneontol...
GO GO:0022607 View Gene Set 3.09e-07 1043 2.771e-05 149 cellular component assembly amigo.geneontol...
GO GO:0009892 View Gene Set 3.116e-07 889 2.775e-05 150 negative regulation of metabolic process amigo.geneontol...
GO GO:0006461 View Gene Set 3.667e-07 595 3.223e-05 151 protein complex assembly amigo.geneontol...
GO GO:0070271 View Gene Set 3.667e-07 595 3.223e-05 151 protein complex biogenesis amigo.geneontol...
GO GO:0016192 View Gene Set 4.514e-07 672 3.941e-05 153 vesicle-mediated transport amigo.geneontol...
GO GO:0034622 View Gene Set 4.788e-07 393 4.154e-05 154 cellular macromolecular complex assembly amigo.geneontol...
GO GO:0070727 View Gene Set 5.576e-07 503 4.775e-05 155 cellular macromolecule localization amigo.geneontol...
GO GO:0016818 View Gene Set 5.544e-07 765 4.775e-05 155 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides amigo.geneontol...
GO GO:0016462 View Gene Set 5.773e-07 762 4.912e-05 157 pyrophosphatase activity amigo.geneontol...
GO GO:0016817 View Gene Set 6.734e-07 769 5.694e-05 158 hydrolase activity acting on acid anhydrides amigo.geneontol...
GO GO:0042470 View Gene Set 7.088e-07 93 5.919e-05 159 melanosome amigo.geneontol...
GO GO:0048770 View Gene Set 7.088e-07 93 5.919e-05 159 pigment granule amigo.geneontol...
GO GO:0010605 View Gene Set 7.33e-07 827 6.083e-05 161 negative regulation of macromolecule metabolic process amigo.geneontol...
GO GO:0000502 View Gene Set 8.152e-07 63 6.723e-05 162 proteasome complex amigo.geneontol...
GO GO:0034613 View Gene Set 8.582e-07 501 7.034e-05 163 cellular protein localization amigo.geneontol...
GO GO:0006457 View Gene Set 8.87e-07 172 7.226e-05 164 protein folding amigo.geneontol...
GO GO:0055114 View Gene Set 9.457e-07 647 7.658e-05 165 oxidation reduction amigo.geneontol...
GO GO:0016604 View Gene Set 1.036e-06 198 8.334e-05 166 nuclear body amigo.geneontol...
GO GO:0042180 View Gene Set 1.068e-06 627 8.541e-05 167 cellular ketone metabolic process amigo.geneontol...
GO GO:0051234 View Gene Set 1.214e-06 2928 9.652e-05 168 establishment of localization amigo.geneontol...
GO GO:0019899 View Gene Set 1.225e-06 641 9.687e-05 169 enzyme binding amigo.geneontol...
GO GO:0070647 View Gene Set 1.331e-06 356 0.000104 170 protein modification by small protein conjugation or removal amigo.geneontol...
GO GO:0017053 View Gene Set 1.327e-06 43 0.000104 170 transcriptional repressor complex amigo.geneontol...
GO GO:0006974 View Gene Set 1.414e-06 412 0.0001098 172 response to DNA damage stimulus amigo.geneontol...
GO GO:0006605 View Gene Set 1.456e-06 273 0.0001125 173 protein targeting amigo.geneontol...
GO GO:0016568 View Gene Set 1.541e-06 324 0.0001183 174 chromatin modification amigo.geneontol...
GO GO:0051439 View Gene Set 1.66e-06 68 0.0001267 175 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle amigo.geneontol...
GO GO:0017111 View Gene Set 1.724e-06 733 0.0001309 176 nucleoside-triphosphatase activity amigo.geneontol...
GO GO:0022618 View Gene Set 1.832e-06 76 0.0001381 177 ribonucleoprotein complex assembly amigo.geneontol...
GO GO:0050789 View Gene Set 1.84e-06 6579 0.0001381 177 regulation of biological process amigo.geneontol...
GO GO:0006810 View Gene Set 1.881e-06 2892 0.0001396 179 transport amigo.geneontol...
GO GO:0043623 View Gene Set 1.872e-06 224 0.0001396 179 cellular protein complex assembly amigo.geneontol...
GO GO:0006006 View Gene Set 2.088e-06 171 0.0001541 181 glucose metabolic process amigo.geneontol...
GO GO:0007005 View Gene Set 2.144e-06 139 0.0001566 182 mitochondrion organization amigo.geneontol...
GO GO:0016853 View Gene Set 2.134e-06 132 0.0001566 182 isomerase activity amigo.geneontol...
GO GO:0048519 View Gene Set 2.338e-06 2064 0.0001698 184 negative regulation of biological process amigo.geneontol...
GO GO:0051082 View Gene Set 2.393e-06 113 0.0001728 185 unfolded protein binding amigo.geneontol...
GO GO:0007015 View Gene Set 2.407e-06 145 0.0001729 186 actin filament organization amigo.geneontol...
GO GO:0034470 View Gene Set 2.542e-06 193 0.0001816 187 ncRNA processing amigo.geneontol...
GO GO:0034660 View Gene Set 2.577e-06 236 0.0001831 188 ncRNA metabolic process amigo.geneontol...
GO GO:0048193 View Gene Set 2.878e-06 137 0.0002009 189 Golgi vesicle transport amigo.geneontol...
GO GO:0050657 View Gene Set 2.886e-06 102 0.0002009 189 nucleic acid transport amigo.geneontol...
GO GO:0050658 View Gene Set 2.886e-06 102 0.0002009 189 RNA transport amigo.geneontol...
GO GO:0051236 View Gene Set 2.886e-06 102 0.0002009 189 establishment of RNA localization amigo.geneontol...
GO GO:0019752 View Gene Set 3.048e-06 613 0.0002099 193 carboxylic acid metabolic process amigo.geneontol...
GO GO:0043436 View Gene Set 3.048e-06 613 0.0002099 193 oxoacid metabolic process amigo.geneontol...
GO GO:0032268 View Gene Set 3.14e-06 576 0.0002144 195 regulation of cellular protein metabolic process amigo.geneontol...
GO GO:0016585 View Gene Set 3.145e-06 84 0.0002144 195 chromatin remodeling complex amigo.geneontol...
GO GO:0006082 View Gene Set 3.392e-06 620 0.00023 197 organic acid metabolic process amigo.geneontol...
GO GO:0048522 View Gene Set 4.193e-06 2042 0.0002815 198 positive regulation of cellular process amigo.geneontol...
GO GO:0044455 View Gene Set 4.179e-06 133 0.0002815 198 mitochondrial membrane part amigo.geneontol...
GO GO:0016787 View Gene Set 4.503e-06 2285 0.0003008 200 hydrolase activity amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP View Gene Set 3.065e-72 1353 7.332e-69 1 Genes up-regulated in CD34+ [Gene ID=947] cells isolated from bone marrow of CML (chronic myelogenous leukemia) patients compared to those from normal donors. www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES View Gene Set 1.747e-63 384 2.09e-60 2 Housekeeping genes identified as expressed across 19 normal tissues. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 3.453e-51 577 2.753e-48 3 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 5.436e-48 1582 3.25e-45 4 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 2.561e-41 744 1.225e-38 5 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 4.382e-41 711 1.747e-38 6 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN View Gene Set 1.742e-40 639 5.952e-38 7 Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts. www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN View Gene Set 4.408e-39 351 1.318e-36 8 Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids. www.broad.mit.e...
Broad ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP View Gene Set 3.942e-32 806 1.048e-29 9 Genes up-regulated in liver tumor compared to the normal adjacent tissue. www.broad.mit.e...
Broad DANG_BOUND_BY_MYC View Gene Set 7.451e-32 1045 1.782e-29 10 Genes whose promoters are bound by MYC [Gene ID=4609] according to MYC Target Gene Database. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 1.262e-31 537 2.744e-29 11 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 1.858e-31 331 3.703e-29 12 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 5.048e-31 1253 9.288e-29 13 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 6.566e-31 832 1.122e-28 14 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 9.842e-31 920 1.569e-28 15 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 2.178e-29 757 3.255e-27 16 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS View Gene Set 6.001e-29 855 8.444e-27 17 Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 6.931e-29 1209 9.21e-27 18 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 2.353e-28 1180 2.962e-26 19 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM View Gene Set 9.119e-27 154 1.091e-24 20 Cluster 7: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] and down-regulated by the combination of MYC and serum. www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP View Gene Set 2.914e-26 290 3.32e-24 21 Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma. www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP View Gene Set 3.491e-26 388 3.796e-24 22 Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195]. www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN View Gene Set 3.666e-26 241 3.813e-24 23 Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_UP View Gene Set 5.773e-25 915 5.753e-23 24 Genes up-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2 View Gene Set 6.161e-25 265 5.895e-23 25 Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 4.221e-23 127 3.883e-21 26 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP View Gene Set 8.706e-23 469 7.713e-21 27 Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 1.238e-22 532 1.058e-20 28 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_DN View Gene Set 2.748e-22 208 2.266e-20 29 Genes down-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP View Gene Set 1.034e-21 1641 8.245e-20 30 Genes up-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 1.599e-21 475 1.234e-19 31 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN View Gene Set 2.171e-21 303 1.623e-19 32 Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes. www.broad.mit.e...
Broad STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN View Gene Set 1.969e-20 437 1.427e-18 33 Genes down-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad BENPORATH_MYC_MAX_TARGETS View Gene Set 3.506e-20 768 2.467e-18 34 Set 'Myc targets2': targets of c-Myc [Gene ID=4609] and Max [Gene ID=4149] identified by ChIP on chip in a Burkitt???s lymphoma cell line; overlap set. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 5.38e-20 485 3.677e-18 35 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad BENPORATH_SOX2_TARGETS View Gene Set 6.316e-20 704 4.197e-18 36 Set 'Sox2 targets': genes upregulated and identified by ChIP on chip as SOX2 [Gene ID=6657] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad LI_AMPLIFIED_IN_LUNG_CANCER View Gene Set 8.132e-20 165 5.257e-18 37 Genes with increased copy number that correlates with increased expression across six different lung adenocarcinoma cell lines. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14 View Gene Set 2.28e-19 131 1.435e-17 38 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 14. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 4.39e-19 276 2.693e-17 39 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_HAPTOTAXIS_DN View Gene Set 8.282e-19 607 4.953e-17 40 Transcripts depleted from pseudopodia of NIH/3T3 cells (fibroblast) in response to haptotactic migratory stimulus by fibronectin FN1 [Gene ID=2335]. www.broad.mit.e...
Broad ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN View Gene Set 1.071e-18 346 6.248e-17 41 Genes down-regulated in normal tissue adjacent to liver tumor compared to the normal liver samples. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 1.855e-18 243 1.056e-16 42 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 2.203e-18 422 1.226e-16 43 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP View Gene Set 5.659e-18 279 3.076e-16 44 Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi. www.broad.mit.e...
Broad LIU_SOX4_TARGETS_DN View Gene Set 7.118e-18 297 3.784e-16 45 Genes down-regulated in LNCaP cells (prostate cancer) by overexpression of SOX4 [Gene ID=6659] and up-regulated by its RNAi knockdown. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_UP View Gene Set 9.299e-18 739 4.835e-16 46 Genes up-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad MUELLER_PLURINET View Gene Set 1.149e-17 294 5.846e-16 47 Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells). www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 1.624e-17 433 8.092e-16 48 Mitochondrial genes www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP View Gene Set 2.32e-17 213 1.132e-15 49 Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples. www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN View Gene Set 2.452e-17 289 1.173e-15 50 Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 3.89e-17 332 1.824e-15 51 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_DN View Gene Set 5.326e-17 571 2.45e-15 52 Genes down-regulated in lymphoblastoid cells from the European population compared to those from the Asian population. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP View Gene Set 9.649e-17 184 4.355e-15 53 Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 2.9e-16 758 1.285e-14 54 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 3.398e-16 420 1.478e-14 55 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 4.552e-16 329 1.944e-14 56 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 5.407e-16 859 2.269e-14 57 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad MILI_PSEUDOPODIA_CHEMOTAXIS_DN View Gene Set 5.54e-16 430 2.285e-14 58 Transcripts depleted in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988]. www.broad.mit.e...
Broad DOUGLAS_BMI1_TARGETS_UP View Gene Set 7.897e-16 497 3.202e-14 59 Genes up-regulated in A4573 cells (Ewing's sarcoma ESFT) after knockdown of BMI1 [Gene ID=648] by RNAi. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 View Gene Set 2.581e-15 165 1.029e-13 60 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 17. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 4.585e-15 317 1.798e-13 61 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN View Gene Set 7.012e-15 124 2.705e-13 62 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad BENPORATH_NANOG_TARGETS View Gene Set 7.757e-15 946 2.945e-13 63 Set 'Nanog targets': genes upregulated and identified by ChIP on chip as Nanog [Gene ID=79923] transcription factor targets in human embryonic stem cells. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_6HR_UP View Gene Set 9.493e-15 50 3.548e-13 64 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 6h. www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK View Gene Set 9.944e-15 1375 3.659e-13 65 Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues. www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK View Gene Set 2.052e-14 410 7.437e-13 66 Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues. www.broad.mit.e...
Broad GARY_CD5_TARGETS_UP View Gene Set 2.121e-14 463 7.571e-13 67 Genes up-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 3.133e-14 203 1.102e-12 68 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_UP View Gene Set 4.2e-14 348 1.456e-12 69 Genes up-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX View Gene Set 5.23e-14 229 1.787e-12 70 Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_DN View Gene Set 5.985e-14 168 2.016e-12 71 Genes down-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN View Gene Set 6.445e-14 158 2.141e-12 72 Genes down-regulated in Wilm's tumor samples compared to fetal kidney. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 6.543e-14 408 2.144e-12 73 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 7.146e-14 208 2.31e-12 74 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL View Gene Set 8.921e-14 109 2.845e-12 75 Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples. www.broad.mit.e...
Broad WAMUNYOKOLI_OVARIAN_CANCER_LMP_UP View Gene Set 1.126e-13 244 3.543e-12 76 Genes up-regulated in mucinous ovarian carcinoma tumors of low malignant potential (LMP) compared to normal ovarian surface epithelium tissue. www.broad.mit.e...
Broad ACEVEDO_METHYLATED_IN_LIVER_CANCER_UP View Gene Set 1.319e-13 2268 4.099e-12 77 Genes whose DNA is hypo-methylated in hepatocellular carcinoma (HCC) compared to normal liver. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1 View Gene Set 1.398e-13 491 4.288e-12 78 The 'group 1 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN View Gene Set 3.252e-13 742 9.847e-12 79 Genes with copy number losses in primary neuroblastoma tumors. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 3.385e-13 68 1.012e-11 80 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad WANG_LMO4_TARGETS_UP View Gene Set 3.665e-13 341 1.082e-11 81 Genes up-regulated in MCF7 cells (breast cancer) engineered to conditionally express LMO4 [Gene ID=8543] by a Tet Off system. www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE View Gene Set 8.632e-13 54 2.518e-11 82 Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 9.891e-13 314 2.851e-11 83 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2 View Gene Set 1.145e-12 111 3.261e-11 84 'Cancer prone response profile' (CPRP): genes common to estradiol and bisphenol A [PubChem=5757 6623] response of epithelial cell cultures from patients at high risk of breast cancer. www.broad.mit.e...
Broad ONKEN_UVEAL_MELANOMA_DN View Gene Set 1.75e-12 509 4.924e-11 85 Genes down-regulated in uveal melanoma: class 2 vs class 1 tumors. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 1.961e-12 436 5.456e-11 86 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 2.046e-12 415 5.624e-11 87 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN View Gene Set 2.107e-12 136 5.728e-11 88 Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP View Gene Set 2.783e-12 589 7.481e-11 89 Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 3.282e-12 532 8.722e-11 90 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad SWEET_LUNG_CANCER_KRAS_UP View Gene Set 3.436e-12 436 9.033e-11 91 Genes up-regulated in the mouse lung cancer model with mutated KRAS [Gene ID=3845]. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN View Gene Set 3.821e-12 123 9.934e-11 92 Genes highly expressed in hepatocellular carcinoma with poor survival. www.broad.mit.e...
Broad FLECHNER_PBL_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 4.377e-12 147 1.126e-10 93 Genes upreglated in peripheral blood lymphocytes (PBL) from patients with well functioning kidneys more than 1-year post transplant compared to those from normal living kidney donors. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 6.067e-12 46 1.544e-10 94 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN View Gene Set 6.282e-12 76 1.582e-10 95 Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298]. www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_UP View Gene Set 6.941e-12 132 1.729e-10 96 The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad SANA_RESPONSE_TO_IFNG_DN View Gene Set 7.039e-12 79 1.736e-10 97 Genes down-regulated in five primary endothelial cell types (lung aortic iliac dermal and colon) by IFNG [Gene ID=3458]. www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP View Gene Set 7.964e-12 283 1.944e-10 98 Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 8.373e-12 143 2.018e-10 99 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 8.438e-12 301 2.018e-10 99 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 8.674e-12 406 2.054e-10 101 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad PROVENZANI_METASTASIS_UP View Gene Set 9.605e-12 188 2.252e-10 102 Genes up-regulated in polysomal and total RNA samples from SW480 cells (primary colorectal carcinoma CRC) compared to the SW620 cells (lymph node metastasis from the same individual). www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 9.754e-12 435 2.265e-10 103 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP View Gene Set 1.25e-11 114 2.876e-10 104 Genes up-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_11 View Gene Set 1.353e-11 93 3.082e-10 105 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 1.508e-11 152 3.402e-10 106 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN View Gene Set 2.205e-11 212 4.929e-10 107 Genes down-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199]. www.broad.mit.e...
Broad ALONSO_METASTASIS_UP View Gene Set 2.377e-11 152 5.265e-10 108 Up-regulated genes in melanoma tumous that developed metastatic disease compared to primary melanoma that did not. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP View Gene Set 2.876e-11 359 6.312e-10 109 The postradiation tumor escape signature: genes up-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad LUI_THYROID_CANCER_PAX8_PPARG_DN View Gene Set 2.981e-11 42 6.482e-10 110 Top genes distinguishing between follicular thyroid carcinoma (FTC) samples by the presence or absence of the PAX8-PPARG [Gene ID=7849 5468] fusion protein. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP View Gene Set 3.194e-11 517 6.884e-10 111 Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_UP View Gene Set 4.06e-11 240 8.671e-10 112 Selected genes up-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP View Gene Set 5.077e-11 178 1.075e-09 113 Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi. www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK View Gene Set 6.358e-11 164 1.334e-09 114 Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues. www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN View Gene Set 6.429e-11 62 1.337e-09 115 Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN View Gene Set 7.176e-11 201 1.48e-09 116 Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1. www.broad.mit.e...
Broad BENPORATH_PROLIFERATION View Gene Set 7.471e-11 140 1.527e-09 117 Set 'Proliferation Cluster': genes defined in human breast tumor expression data. www.broad.mit.e...
Broad PELLICCIOTTA_HDAC_IN_ANTIGEN_PRESENTATION_DN View Gene Set 1.043e-10 49 2.115e-09 118 Antigen processing and presentation genes down-regulated in JY cells (B lymphocytes) treated with trichostatin A (TSA) [PubChem=5562]. www.broad.mit.e...
Broad CHAUHAN_RESPONSE_TO_METHOXYESTRADIOL_DN View Gene Set 1.248e-10 99 2.508e-09 119 Genes down-regulated by 2-methoxyestradiol (2ME2) [PubChem=1573] in the MM.1S cell line (multiple myeloma) sensitive to dexamethasone [PubChem=5743]. www.broad.mit.e...
Broad CHNG_MULTIPLE_MYELOMA_HYPERPLOID_UP View Gene Set 1.451e-10 51 2.893e-09 120 Protein biosynthesis transport or catabolism genes up-regulated in hyperploid multiple myeloma (MM) compared to the non-hyperploid MM samples. www.broad.mit.e...
Broad MARTINEZ_RB1_AND_TP53_TARGETS_DN View Gene Set 1.768e-10 539 3.495e-09 121 Genes down-regulated in mice with skin specific double knockout of both RB1 and TP53 [Gene ID=5925 7157] by Cre-lox. www.broad.mit.e...
Broad WOOD_EBV_EBNA1_TARGETS_UP View Gene Set 2.297e-10 104 4.503e-09 122 Genes up-regulated in the Ad/AH cells (adenocarcinoma) engineered to stably express the Epstein-Barr virus (EBV) gene EBNA1. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 2.34e-10 353 4.55e-09 123 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad BHATTACHARYA_EMBRYONIC_STEM_CELL View Gene Set 2.724e-10 76 5.255e-09 124 The 'stemnes' signature: genes up-regulated and common to 6 human embryonic stem cell lines tested. www.broad.mit.e...
Broad WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_UP View Gene Set 3.08e-10 99 5.894e-09 125 Genes up-regulated in rectal cancer patients resistant to radiotherapy (non-responders) relative to the sensitive ones (responders). www.broad.mit.e...
Broad BENPORATH_ES_1 View Gene Set 3.33e-10 367 6.323e-09 126 Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies. www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK View Gene Set 3.462e-10 92 6.521e-09 127 Genes constituting the BRCA-centered network (BCN). www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_UP View Gene Set 3.505e-10 88 6.551e-09 128 Genes up-regulated in prostate cancer samples. www.broad.mit.e...
Broad TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP View Gene Set 3.641e-10 195 6.751e-09 129 Genes up-regulated in monocytes by RUNX1-RUNX1T1 [Gene ID=861 862] fusion. www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN View Gene Set 3.961e-10 96 7.289e-09 130 Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444]. www.broad.mit.e...
Broad MULLIGHAN_MLL_SIGNATURE_2_UP View Gene Set 6.605e-10 393 1.206e-08 131 The 'MLL signature 2': genes up-regulated in pediatric AML (acute myeloid leukemia) with rearranged MLL [Gene ID=4297] compared to the AML cases with intact MLL and NPM1 [Gene ID=4869]. www.broad.mit.e...
Broad PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP View Gene Set 7.049e-10 257 1.277e-08 132 Genes up-regulated in post-GC BCL6 [Gene ID=604] dependent B cell non-Hodgkin's lymphoma (B-NHL) vs MYC [Gene ID=4609] driven pre-GC lymphoma; GC = germinal center. www.broad.mit.e...
Broad NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP View Gene Set 7.752e-10 263 1.384e-08 133 Up-regulated genes in peripheral zone of human pancreatic cancer growing in the pancreas of nude mice compared to that of the tumor from the central zone. www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER View Gene Set 7.745e-10 167 1.384e-08 133 Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines. www.broad.mit.e...
Broad MULLIGHAN_MLL_SIGNATURE_1_UP View Gene Set 7.851e-10 358 1.391e-08 135 The 'MLL signature 1': genes up-regulated in pediatric AML (acute myeloid leukemia) with rearranged MLL [Gene ID=4297] compared to all AML cases with the intact gene. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_DN View Gene Set 8.414e-10 250 1.469e-08 136 Genes down-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13 View Gene Set 8.358e-10 158 1.469e-08 136 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 13. www.broad.mit.e...
Broad LIAO_METASTASIS View Gene Set 9.123e-10 513 1.57e-08 138 Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C7 View Gene Set 9.112e-10 69 1.57e-08 138 Cluster 7: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad HOLLMAN_APOPTOSIS_VIA_CD40_DN View Gene Set 1.024e-09 255 1.75e-08 140 Genes down-regulated in DLBCL (diffuse large B-cell lymphoma) cell lines sensitive to stimulation of CD40 [Gene ID=958] relative to the resistant ones. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 1.12e-09 402 1.9e-08 141 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad UDAYAKUMAR_MED1_TARGETS_UP View Gene Set 1.143e-09 129 1.912e-08 142 Genes up-regulated in HeLa cells after knockdown of MED1 [Gene ID=5469] by RNAi. www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP View Gene Set 1.137e-09 370 1.912e-08 142 Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells. www.broad.mit.e...
Broad SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP View Gene Set 1.391e-09 45 2.311e-08 144 Top 50 up-regulated markers distinguishing diffuse large B-cell lymphoma (DLBCL) from follicular lymphoma (FL) samples. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 1.621e-09 368 2.673e-08 145 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_UP View Gene Set 1.732e-09 45 2.819e-08 146 Cluster 5: genes up-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] alone or in combination with serum but not by serum alone. www.broad.mit.e...
Broad CAFFAREL_RESPONSE_TO_THC_DN View Gene Set 1.725e-09 25 2.819e-08 146 Genes down-regulated in EVSA-T cells (breast cancer) treated THC (delta-9-tetrahydrocannabinol) [PubChem=6610319]. www.broad.mit.e...
Broad ALCALA_APOPTOSIS View Gene Set 1.828e-09 87 2.955e-08 148 Genes able to induce cell death in an expression cDNA library screen. www.broad.mit.e...
Broad SHEPARD_CRUSH_AND_BURN_MUTANT_UP View Gene Set 1.89e-09 135 3.034e-08 149 Human orthologs of genes up-regulated in the crb ('crash and burn') zebrafish mutant that represents a loss-of-function mutation in BMYB [Gene ID=4605]. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_10 View Gene Set 2.371e-09 63 3.78e-08 150 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 11. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 2.478e-09 80 3.926e-08 151 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP View Gene Set 2.617e-09 539 4.118e-08 152 Genes up-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin LGALS1) [Gene ID=3956] compared to that with bacterial lipopolysaccharide (LPS). www.broad.mit.e...
Broad KIM_MYC_AMPLIFICATION_TARGETS_UP View Gene Set 2.728e-09 155 4.265e-08 153 Genes positively correlated with amplifications of MYC [Gene ID=4609] in SCLC (small cell lung cancer) cell lines. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 3.818e-09 53 5.931e-08 154 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS View Gene Set 4.553e-09 805 7.026e-08 155 Transcripts in hematopoietic stem cells (HSC) which are trans-regulated (i.e. modulated by a QTL (quantitative trait locus) not in a close proximity to the gene). www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES View Gene Set 4.803e-09 630 7.365e-08 156 Genes showing cell-cycle stage-specific expression [PMID=12058064]. www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 5.72e-09 138 8.715e-08 157 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad KAAB_HEART_ATRIUM_VS_VENTRICLE_DN View Gene Set 6.508e-09 257 9.852e-08 158 Genes up-regulated in the ventricles of healthy hearts compared to atria. www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS View Gene Set 7.041e-09 92 1.059e-07 159 Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 8.383e-09 599 1.253e-07 160 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad TOOKER_GEMCITABINE_RESISTANCE_DN View Gene Set 8.754e-09 122 1.293e-07 161 Down-regulated genes in Calu3 cells (non-small cell lung cancer NSCLC) resistant to gemcitabine [PubChem=3461] compared to the parental line sensitive to the drug. www.broad.mit.e...
Broad TOOKER_RESPONSE_TO_BEXAROTENE_UP View Gene Set 8.754e-09 122 1.293e-07 161 Up-regulated genes in Calu3 cells (non-small lung cancer cells NSCLC) resitant to gemcitabine [PubChem=3461] in response to bexarotene [PubChem=82146]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_DN View Gene Set 8.996e-09 241 1.32e-07 163 Genes down-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad GENTILE_UV_RESPONSE_CLUSTER_D4 View Gene Set 1.057e-08 49 1.542e-07 164 Cluster d4: genes progressively down-regulated in WS1 cells (fibroblast) through 12 h after irradiation with high dose UV-C. www.broad.mit.e...
Broad KAAB_FAILED_HEART_ATRIUM_DN View Gene Set 1.174e-08 139 1.702e-07 165 Genes down-regulated in atria of failing hearts (DCM and ICM) compared to healthy controls. www.broad.mit.e...
Broad GENTILE_UV_HIGH_DOSE_DN View Gene Set 1.188e-08 240 1.712e-07 166 Selected genes down-regulated in WS1 (fibroblast) in response to irradiation with high dose UV-C. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP View Gene Set 1.3e-08 681 1.862e-07 167 Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad LUI_TARGETS_OF_PAX8_PPARG_FUSION View Gene Set 1.362e-08 31 1.94e-07 168 Genes down-regulated in follicular thyroid carcinoma (FTC) samples that bear PAX8-PPARG [Gene ID=7849 5468] fusion protein. www.broad.mit.e...
Broad GRUETZMANN_PANCREATIC_CANCER_UP View Gene Set 1.54e-08 345 2.179e-07 169 Genes up-regulated in pancreatic ductal adenocarcinoma (PDAC) identified in a meta analysis across four independent studies. www.broad.mit.e...
Broad FERNANDEZ_BOUND_BY_MYC View Gene Set 1.628e-08 176 2.291e-07 170 Genes identified by ChIP within the high-affinity group of MYC [Gene ID=4609] targets. www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE View Gene Set 1.795e-08 315 2.51e-07 171 Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells. www.broad.mit.e...
Broad MARTINEZ_TP53_TARGETS_UP View Gene Set 1.859e-08 539 2.585e-07 172 Genes up-regulated in mice with skin specific knockout of TP53 [Gene ID=7157]. www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP View Gene Set 2.022e-08 220 2.795e-07 173 Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC View Gene Set 2.114e-08 101 2.906e-07 174 Cluster 2: genes up-regulated in B493-6 cells (B lymphocytes) by serum alone or in combination with MYC [Gene ID=4609] but not by MYC alone. www.broad.mit.e...
Broad FARMER_BREAST_CANCER_APOCRINE_VS_BASAL View Gene Set 2.131e-08 321 2.913e-07 175 Genes which best discriminate between two groups of breast cancer according the status of ESR1 and AR [Gene ID=2099 367]: apocrine (ESR1- AR+) vs basal (ESR1- AR-). www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 2.213e-08 427 3.003e-07 176 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad POMEROY_MEDULLOBLASTOMA_PROGNOSIS_DN View Gene Set 2.222e-08 39 3.003e-07 176 Top marker genes in medulloblastoma associated with poor response to treatment (poor outcome). www.broad.mit.e...
Broad FLECHNER_PBL_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP View Gene Set 2.688e-08 61 3.613e-07 178 Genes diffierentially expressed in peripheral blood lymphocytes (PBL) from patients with acute transplant rejection compared to those from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad JIANG_HYPOXIA_NORMAL View Gene Set 2.735e-08 213 3.654e-07 179 Genes up-regulated in RPTEC cells (normal kidney) by hypoxia. www.broad.mit.e...
Broad OSMAN_BLADDER_CANCER_DN View Gene Set 2.915e-08 358 3.874e-07 180 Genes down-regulated in blood samples from bladder cancer patients. www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_7 View Gene Set 2.965e-08 65 3.918e-07 181 Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 7. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 3.246e-08 155 4.266e-07 182 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad PENG_GLUTAMINE_DEPRIVATION_DN View Gene Set 3.483e-08 84 4.553e-07 183 Genes down-regulated in BJAB cells (B-lymphoma) after glutamine [PubChem=738] deprivation. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN View Gene Set 3.923e-08 732 5.1e-07 184 Genes down-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 4.551e-08 508 5.885e-07 185 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN View Gene Set 4.636e-08 215 5.961e-07 186 Genes down-regulated in polymorphonuclear neutrophilic granulocytes (PMNs) attracted to skin wounds. www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN View Gene Set 6.413e-08 308 8.203e-07 187 Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only. www.broad.mit.e...
Broad ACEVEDO_LIVER_CANCER_DN View Gene Set 7.243e-08 516 9.215e-07 188 Genes down-regulated in hepatocellular carcinoma (HCC) compared to normal liver samples. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 7.433e-08 138 9.407e-07 189 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad MOOTHA_VOXPHOS View Gene Set 7.729e-08 82 9.73e-07 190 Genes involved in oxidative phosphorylation; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad JIANG_HYPOXIA_CANCER View Gene Set 8.1e-08 56 1.014e-06 191 Genes up-regulated in 786-0 cells (renal carcinoma RCC) by hypoxia and in the absensce of VHL [Gene ID=7428]. www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN View Gene Set 8.146e-08 49 1.015e-06 192 Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 8.229e-08 171 1.02e-06 193 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_UP View Gene Set 8.65e-08 166 1.067e-06 194 Genes up-regulated in normal tissue adjacent to liver tumor compared to the normal liver samples. www.broad.mit.e...
Broad SHAFFER_IRF4_TARGETS_IN_ACTIVATED_B_LYMPHOCYTE View Gene Set 9.388e-08 78 1.152e-06 195 IRF4 [Gene ID=3662] target genes induced after activation of primary B lymphocytes by anti-IgM crosslinking. www.broad.mit.e...
Broad DITTMER_PTHLH_TARGETS_UP View Gene Set 9.861e-08 108 1.203e-06 196 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of PTHLH [Gene ID=5744] by RNAi. www.broad.mit.e...
Broad TAKAO_RESPONSE_TO_UVB_RADIATION_DN View Gene Set 9.908e-08 89 1.203e-06 196 Genes down-regulated in primary tissue culture of epidermal kerationcytes after UVB irradiation. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN View Gene Set 1.105e-07 111 1.335e-06 198 Genes down-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad MARTINEZ_RB1_TARGETS_DN View Gene Set 1.232e-07 488 1.481e-06 199 Genes down-regulated in mice with skin specific knockout of RB1 [Gene ID=5925] by Cre-lox. www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_DN View Gene Set 1.308e-07 487 1.565e-06 200 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad SA_G1_AND_S_PHASES View Gene Set 0.0001821 15 0.008561 1 Cdk2 4 and 6 bind cyclin D in G1 while cdk2/cyclin E promotes the G1/S transition. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad BIOCARTA_EIF_PATHWAY View Gene Set 5.258e-05 16 0.003804 1 Eukaryotic protein translation www.broad.mit.e...
Broad BIOCARTA_PROTEASOME_PATHWAY View Gene Set 4.563e-05 19 0.003804 1 Proteasome Complex www.broad.mit.e...
Broad BIOCARTA_CHREBP2_PATHWAY View Gene Set 2.105e-05 42 0.003804 1 Regulation And Function Of ChREBP in Liver www.broad.mit.e...
Broad BIOCARTA_ACTINY_PATHWAY View Gene Set 7.968e-05 20 0.004323 4 Y branching of actin filaments www.broad.mit.e...
Broad BIOCARTA_AKAP95_PATHWAY View Gene Set 0.0002467 12 0.01037 5 AKAP95 role in mitosis and chromosome dynamics www.broad.mit.e...
Broad BIOCARTA_SALMONELLA_PATHWAY View Gene Set 0.0003355 13 0.01037 5 How does salmonella hijack a cell www.broad.mit.e...
Broad BIOCARTA_INTEGRIN_PATHWAY View Gene Set 0.0003469 38 0.01037 5 Integrin Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_P27_PATHWAY View Gene Set 0.0003822 13 0.01037 5 Regulation of p27 Phosphorylation during Cell Cycle Progression www.broad.mit.e...
Broad BIOCARTA_MTA3_PATHWAY View Gene Set 0.0005238 19 0.01137 9 Downregulated of MTA-3 in ER-negative Breast Tumors www.broad.mit.e...
Broad BIOCARTA_UCALPAIN_PATHWAY View Gene Set 0.000501 18 0.01137 9 uCalpain and friends in Cell spread www.broad.mit.e...
Broad BIOCARTA_MTOR_PATHWAY View Gene Set 0.0005874 23 0.01159 11 mTOR Signaling Pathway www.broad.mit.e...
Broad BIOCARTA_CELLCYCLE_PATHWAY View Gene Set 0.0008418 23 0.01522 12 Cyclins and Cell Cycle Regulation www.broad.mit.e...
Broad BIOCARTA_CDC42RAC_PATHWAY View Gene Set 0.001791 16 0.0299 13 Role of PI3K subunit p85 in regulation of Actin Organization and Cell Migration www.broad.mit.e...
Broad BIOCARTA_RACCYCD_PATHWAY View Gene Set 0.002213 26 0.0331 14 Influence of Ras and Rho proteins on G1 to S Transition www.broad.mit.e...
Broad BIOCARTA_RHO_PATHWAY View Gene Set 0.002288 32 0.0331 14 Rho cell motility signaling pathway www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY View Gene Set 0.00259 10 0.03513 16 Role of Ran in mitotic spindle regulation www.broad.mit.e...
Broad BIOCARTA_GLYCOLYSIS_PATHWAY View Gene Set 0.003458 10 0.04169 17 Glycolysis Pathway www.broad.mit.e...
Broad BIOCARTA_NFAT_PATHWAY View Gene Set 0.00332 54 0.04169 17 NFAT and Hypertrophy of the heart (Transcription in the broken heart) www.broad.mit.e...
Broad BIOCARTA_MCALPAIN_PATHWAY View Gene Set 0.004333 25 0.04948 19 mCalpain and friends in Cell motility www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_RIBOSOME View Gene Set 1.015e-18 88 1.888e-16 1 Ribosome www.broad.mit.e...
Broad KEGG_SPLICEOSOME View Gene Set 1.117e-06 118 8.259e-05 2 Spliceosome www.broad.mit.e...
Broad KEGG_CELL_CYCLE View Gene Set 1.497e-06 128 8.259e-05 2 Cell cycle www.broad.mit.e...
Broad KEGG_ALZHEIMERS_DISEASE View Gene Set 2.219e-06 169 8.259e-05 2 Alzheimer's disease www.broad.mit.e...
Broad KEGG_PARKINSONS_DISEASE View Gene Set 2.22e-06 133 8.259e-05 2 Parkinson's disease www.broad.mit.e...
Broad KEGG_ONE_CARBON_POOL_BY_FOLATE View Gene Set 1.905e-05 17 0.0005905 6 One carbon pool by folate www.broad.mit.e...
Broad KEGG_PENTOSE_PHOSPHATE_PATHWAY View Gene Set 2.914e-05 27 0.0006023 7 Pentose phosphate pathway www.broad.mit.e...
Broad KEGG_PROTEASOME View Gene Set 2.574e-05 48 0.0006023 7 Proteasome www.broad.mit.e...
Broad KEGG_CHRONIC_MYELOID_LEUKEMIA View Gene Set 2.706e-05 73 0.0006023 7 Chronic myeloid leukemia www.broad.mit.e...
Broad KEGG_OXIDATIVE_PHOSPHORYLATION View Gene Set 6.215e-05 135 0.001156 10 Oxidative phosphorylation www.broad.mit.e...
Broad KEGG_PROTEIN_EXPORT View Gene Set 8.56e-05 24 0.001447 11 Protein export www.broad.mit.e...
Broad KEGG_PATHOGENIC_ESCHERICHIA_COLI_INFECTION View Gene Set 0.0001123 59 0.00174 12 Pathogenic Escherichia coli infection www.broad.mit.e...
Broad KEGG_OOCYTE_MEIOSIS View Gene Set 0.0001538 114 0.002201 13 Oocyte meiosis www.broad.mit.e...
Broad KEGG_PANCREATIC_CANCER View Gene Set 0.0001872 70 0.002487 14 Pancreatic cancer www.broad.mit.e...
Broad KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS View Gene Set 0.0004399 138 0.005455 15 Ubiquitin mediated proteolysis www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM View Gene Set 0.0004958 98 0.005763 16 Pyrimidine metabolism www.broad.mit.e...
Broad KEGG_GLUTATHIONE_METABOLISM View Gene Set 0.0005425 50 0.005936 17 Glutathione metabolism www.broad.mit.e...
Broad KEGG_COLORECTAL_CANCER View Gene Set 0.0009694 62 0.01002 18 Colorectal cancer www.broad.mit.e...
Broad KEGG_GLYCOLYSIS_GLUCONEOGENESIS View Gene Set 0.001499 62 0.01348 19 Glycolysis / Gluconeogenesis www.broad.mit.e...
Broad KEGG_N_GLYCAN_BIOSYNTHESIS View Gene Set 0.001457 46 0.01348 19 N-Glycan biosynthesis www.broad.mit.e...
Broad KEGG_BLADDER_CANCER View Gene Set 0.001522 42 0.01348 19 Bladder cancer www.broad.mit.e...
Broad KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION View Gene Set 0.001838 86 0.01554 22 Progesterone-mediated oocyte maturation www.broad.mit.e...
Broad KEGG_LYSINE_DEGRADATION View Gene Set 0.002018 44 0.01615 23 Lysine degradation www.broad.mit.e...
Broad KEGG_P53_SIGNALING_PATHWAY View Gene Set 0.002084 69 0.01615 23 p53 signaling pathway www.broad.mit.e...
Broad KEGG_PATHWAYS_IN_CANCER View Gene Set 0.002568 328 0.01911 25 Pathways in cancer www.broad.mit.e...
Broad KEGG_GALACTOSE_METABOLISM View Gene Set 0.003124 26 0.02152 26 Galactose metabolism www.broad.mit.e...
Broad KEGG_NON_SMALL_CELL_LUNG_CANCER View Gene Set 0.003078 54 0.02152 26 Non-small cell lung cancer www.broad.mit.e...
Broad KEGG_CYSTEINE_AND_METHIONINE_METABOLISM View Gene Set 0.003745 34 0.02261 28 Cysteine and methionine metabolism www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR View Gene Set 0.003494 44 0.02261 28 Nucleotide excision repair www.broad.mit.e...
Broad KEGG_INSULIN_SIGNALING_PATHWAY View Gene Set 0.003769 137 0.02261 28 Insulin signaling pathway www.broad.mit.e...
Broad KEGG_HUNTINGTONS_DISEASE View Gene Set 0.003731 185 0.02261 28 Huntington's disease www.broad.mit.e...
Broad KEGG_CITRATE_CYCLE_TCA_CYCLE View Gene Set 0.005161 32 0.0295 32 Citrate cycle (TCA cycle) www.broad.mit.e...
Broad KEGG_PURINE_METABOLISM View Gene Set 0.005323 157 0.0295 32 Purine metabolism www.broad.mit.e...
Broad KEGG_NEUROTROPHIN_SIGNALING_PATHWAY View Gene Set 0.005392 126 0.0295 32 Neurotrophin signaling pathway www.broad.mit.e...
Broad KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS View Gene Set 0.005899 11 0.03135 35 Valine leucine and isoleucine biosynthesis www.broad.mit.e...
Broad KEGG_PYRUVATE_METABOLISM View Gene Set 0.007923 40 0.04093 36 Pyruvate metabolism www.broad.mit.e...
Broad KEGG_MTOR_SIGNALING_PATHWAY View Gene Set 0.008412 52 0.04229 37 mTOR signaling pathway www.broad.mit.e...
Broad KEGG_GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM View Gene Set 0.00905 16 0.0443 38 Glyoxylate and dicarboxylate metabolism www.broad.mit.e...
Broad KEGG_VIBRIO_CHOLERAE_INFECTION View Gene Set 0.009498 56 0.04519 39 Vibrio cholerae infection www.broad.mit.e...
Broad KEGG_GLIOMA View Gene Set 0.009719 65 0.04519 39 Glioma www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_METABOLISM_OF_PROTEINS View Gene Set 1.07e-26 215 4.602e-24 1 Genes involved in Metabolism of proteins www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 2.423e-24 120 5.209e-22 2 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 7.194e-24 415 1.031e-21 3 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT View Gene Set 2.142e-22 106 2.303e-20 4 Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit www.broad.mit.e...
Broad REACTOME_DIABETES_PATHWAYS View Gene Set 2.383e-20 383 2.049e-18 5 Genes involved in Diabetes pathways www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS View Gene Set 5.503e-20 95 3.944e-18 6 Genes involved in Formation of a pool of free 40S subunits www.broad.mit.e...
Broad REACTOME_INSULIN_SYNTHESIS_AND_SECRETION View Gene Set 1.034e-19 129 6.354e-18 7 Genes involved in Insulin Synthesis and Secretion www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE View Gene Set 2.463e-19 137 1.324e-17 8 Genes involved in Influenza Life Cycle www.broad.mit.e...
Broad REACTOME_PEPTIDE_CHAIN_ELONGATION View Gene Set 2.885e-19 84 1.378e-17 9 Genes involved in Peptide chain elongation www.broad.mit.e...
Broad REACTOME_VIRAL_MRNA_TRANSLATION View Gene Set 4.584e-18 84 1.971e-16 10 Genes involved in Viral mRNA Translation www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GENE_EXPRESSION_IN_BETA_CELLS View Gene Set 3.105e-15 101 1.214e-13 11 Genes involved in Regulation of gene expression in beta cells www.broad.mit.e...
Broad REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION View Gene Set 6.099e-15 100 2.185e-13 12 Genes involved in Influenza Viral RNA Transcription and Replication www.broad.mit.e...
Broad REACTOME_REGULATION_OF_BETA_CELL_DEVELOPMENT View Gene Set 9.532e-15 114 3.153e-13 13 Genes involved in Regulation of beta-cell development www.broad.mit.e...
Broad REACTOME_TRANSLATION_INITIATION_COMPLEX_FORMATION View Gene Set 5.162e-13 56 1.586e-11 14 Genes involved in Translation initiation complex formation www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA View Gene Set 6.119e-12 128 1.754e-10 15 Genes involved in Processing of Capped Intron-Containing Pre-mRNA www.broad.mit.e...
Broad REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS View Gene Set 7.487e-11 120 2.012e-09 16 Genes involved in Host Interactions of HIV factors www.broad.mit.e...
Broad REACTOME_INTEGRATION_OF_ENERGY_METABOLISM View Gene Set 1.239e-10 229 3.133e-09 17 Genes involved in Integration of energy metabolism www.broad.mit.e...
Broad REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX View Gene Set 5.836e-10 49 1.394e-08 18 Genes involved in Formation of the ternary complex and subsequently the 43S complex www.broad.mit.e...
Broad REACTOME_G1_S_TRANSITION View Gene Set 8.811e-10 102 1.994e-08 19 Genes involved in G1/S Transition www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS View Gene Set 5.187e-09 124 1.115e-07 20 Genes involved in Elongation and Processing of Capped Transcripts www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING View Gene Set 5.859e-09 97 1.2e-07 21 Genes involved in mRNA Splicing www.broad.mit.e...
Broad REACTOME_GLUCOSE_REGULATION_OF_INSULIN_SECRETION View Gene Set 6.005e-08 161 1.144e-06 22 Genes involved in Glucose Regulation of Insulin Secretion www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES View Gene Set 6.118e-08 157 1.144e-06 22 Genes involved in Mitotic M-M/G1 phases www.broad.mit.e...
Broad REACTOME_HIV_INFECTION View Gene Set 9.537e-08 183 1.709e-06 24 Genes involved in HIV Infection www.broad.mit.e...
Broad REACTOME_M_G1_TRANSITION View Gene Set 1.524e-07 61 2.521e-06 25 Genes involved in M/G1 Transition www.broad.mit.e...
Broad REACTOME_METABLISM_OF_NUCLEOTIDES View Gene Set 1.524e-07 71 2.521e-06 25 Genes involved in Metablism of nucleotides www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES View Gene Set 1.998e-07 119 3.182e-06 27 Genes involved in Metabolism of carbohydrates www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC View Gene Set 2.573e-07 306 3.815e-06 28 Genes involved in Cell Cycle Mitotic www.broad.mit.e...
Broad REACTOME_S_PHASE View Gene Set 2.5e-07 103 3.815e-06 28 Genes involved in S Phase www.broad.mit.e...
Broad REACTOME_ORC1_REMOVAL_FROM_CHROMATIN View Gene Set 2.964e-07 63 4.248e-06 30 Genes involved in Orc1 removal from chromatin www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT View Gene Set 3.94e-07 142 5.465e-06 31 Genes involved in Formation and Maturation of mRNA Transcript www.broad.mit.e...
Broad REACTOME_REGULATION_OF_INSULIN_SECRETION View Gene Set 6.884e-07 212 9.25e-06 32 Genes involved in Regulation of Insulin Secretion www.broad.mit.e...
Broad REACTOME_REGULATION_OF_APC_ACTIVATORS_BETWEEN_G1_S_AND_EARLY_ANAPHASE View Gene Set 9.12e-07 71 1.188e-05 33 Genes involved in Regulation of APC/C activators between G1/S and early anaphase www.broad.mit.e...
Broad REACTOME_SIGNALING_BY_WNT View Gene Set 1.019e-06 58 1.288e-05 34 Genes involved in Signaling by Wnt www.broad.mit.e...
Broad REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE View Gene Set 1.151e-06 47 1.414e-05 35 Genes involved in Regulation of ornithine decarboxylase (ODC) www.broad.mit.e...
Broad REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION View Gene Set 1.251e-06 23 1.495e-05 36 Genes involved in Cytosolic tRNA aminoacylation www.broad.mit.e...
Broad REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ View Gene Set 1.653e-06 58 1.92e-05 37 Genes involved in Cyclin E associated events during G1/S transition www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA View Gene Set 2.02e-06 95 2.286e-05 38 Genes involved in Metabolism of RNA www.broad.mit.e...
Broad REACTOME_SIGNALLING_BY_NGF View Gene Set 3.864e-06 216 4.261e-05 39 Genes involved in Signalling by NGF www.broad.mit.e...
Broad REACTOME_CDC20_PHOSPHO_APC_MEDIATED_DEGRADATION_OF_CYCLIN_A View Gene Set 4.085e-06 63 4.392e-05 40 Genes involved in Cdc20:Phospho-APC/C mediated degradation of Cyclin A www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S View Gene Set 4.574e-06 22 4.797e-05 41 Genes involved in E2F transcriptional targets at G1/S www.broad.mit.e...
Broad REACTOME_NUCLEAR_IMPORT_OF_REV_PROTEIN View Gene Set 5.208e-06 30 5.332e-05 42 Genes involved in Nuclear import of Rev protein www.broad.mit.e...
Broad REACTOME_DNA_REPLICATION_PRE_INITIATION View Gene Set 5.546e-06 76 5.535e-05 43 Genes involved in DNA Replication Pre-Initiation www.broad.mit.e...
Broad REACTOME_PREFOLDIN_MEDIATED_TRANSFER_OF_SUBSTRATE_TO_CCT_TRIC View Gene Set 5.664e-06 28 5.535e-05 43 Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC www.broad.mit.e...
Broad REACTOME_APOPTOSIS View Gene Set 8.238e-06 129 7.872e-05 45 Genes involved in Apoptosis www.broad.mit.e...
Broad REACTOME_ELECTRON_TRANSPORT_CHAIN View Gene Set 1.005e-05 75 9e-05 46 Genes involved in Electron Transport Chain www.broad.mit.e...
Broad REACTOME_MEMBRANE_TRAFFICKING View Gene Set 9.676e-06 78 9e-05 46 Genes involved in Membrane Trafficking www.broad.mit.e...
Broad REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21 View Gene Set 9.915e-06 52 9e-05 46 Genes involved in SCF(Skp2)-mediated degradation of p2721 www.broad.mit.e...
Broad REACTOME_SYNTHESIS_OF_DNA View Gene Set 1.043e-05 89 9.155e-05 49 Genes involved in Synthesis of DNA www.broad.mit.e...
Broad REACTOME_CHAPERONIN_MEDIATED_PROTEIN_FOLDING View Gene Set 1.397e-05 50 0.0001201 50 Genes involved in Chaperonin-mediated protein folding www.broad.mit.e...
Broad REACTOME_P53_INDEPENDENT_DNA_DAMAGE_RESPONSE View Gene Set 1.528e-05 43 0.0001254 51 Genes involved in p53-Independent DNA Damage Response www.broad.mit.e...
Broad REACTOME_REV_MEDIATED_NUCLEAR_EXPORT_OF_HIV1_RNA View Gene Set 1.507e-05 31 0.0001254 51 Genes involved in Rev-mediated nuclear export of HIV-1 RNA www.broad.mit.e...
Broad REACTOME_STABILIZATION_OF_P53 View Gene Set 1.545e-05 46 0.0001254 51 Genes involved in Stabilization of p53 www.broad.mit.e...
Broad REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY View Gene Set 1.788e-05 29 0.0001424 54 Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING View Gene Set 2.238e-05 61 0.0001719 55 Genes involved in Clathrin derived vesicle budding www.broad.mit.e...
Broad REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 View Gene Set 2.238e-05 48 0.0001719 55 Genes involved in SCF-beta-TrCP mediated degradation of Emi1 www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY View Gene Set 2.471e-05 50 0.0001864 57 Genes involved in snRNP Assembly www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS View Gene Set 2.609e-05 54 0.0001934 58 Genes involved in Golgi Associated Vesicle Biogenesis www.broad.mit.e...
Broad REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G View Gene Set 2.863e-05 47 0.0002087 59 Genes involved in Vif-mediated degradation of APOBEC3G www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_AMINO_ACIDS View Gene Set 3.102e-05 162 0.0002223 60 Genes involved in Metabolism of amino acids www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_CHECKPOINTS View Gene Set 4.625e-05 110 0.000326 61 Genes involved in Cell Cycle Checkpoints www.broad.mit.e...
Broad REACTOME_SYNTHESIS_AND_INTERCONVERSION_OF_NUCLEOTIDE_DI_AND_TRIPHOSPHATES View Gene Set 5.613e-05 18 0.0003893 62 Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates www.broad.mit.e...
Broad REACTOME_GLUCOSE_METABOLISM View Gene Set 6.533e-05 56 0.0004459 63 Genes involved in Glucose metabolism www.broad.mit.e...
Broad REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX View Gene Set 6.91e-05 52 0.0004643 64 Genes involved in CDT1 association with the CDC6:ORC:origin complex www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT View Gene Set 7.641e-05 42 0.0005055 65 Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS View Gene Set 8.084e-05 29 0.0005267 66 Genes involved in Transport of Ribonucleoproteins into the Host Nucleus www.broad.mit.e...
Broad REACTOME_FORMATION_OF_TUBULIN_FOLDING_INTERMEDIATES_BY_CCT_TRIC View Gene Set 9.887e-05 22 0.0006346 67 Genes involved in Formation of tubulin folding intermediates by CCT/TriC www.broad.mit.e...
Broad REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC View Gene Set 0.0001113 57 0.0007041 68 Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C www.broad.mit.e...
Broad REACTOME_VPR_MEDIATED_NUCLEAR_IMPORT_OF_PICS View Gene Set 0.0001142 31 0.0007115 69 Genes involved in Vpr-mediated nuclear import of PICs www.broad.mit.e...
Broad REACTOME_DARPP32_EVENTS View Gene Set 0.000119 26 0.0007309 70 Genes involved in DARPP-32 events www.broad.mit.e...
Broad REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN View Gene Set 0.0001255 29 0.00076 71 Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein www.broad.mit.e...
Broad REACTOME_AXON_GUIDANCE View Gene Set 0.0002932 160 0.001751 72 Genes involved in Axon guidance www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION View Gene Set 0.0002997 15 0.001766 73 Genes involved in Cyclin A1 associated events during G2/M transition www.broad.mit.e...
Broad REACTOME_FURTHER_PLATELET_RELEASATE View Gene Set 0.0003153 24 0.001832 74 Genes involved in Further platelet releasate www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION View Gene Set 0.0003212 33 0.001841 75 Genes involved in E2F mediated regulation of DNA replication www.broad.mit.e...
Broad REACTOME_PURINE_RIBONUCLEOSIDE_MONOPHOSPHATE_BIOSYNTHESIS View Gene Set 0.0003501 11 0.001981 76 Genes involved in Purine ribonucleoside monophosphate biosynthesis www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_THE_SLBP_INDEPENDENT_MATURE_MRNA View Gene Set 0.0004013 32 0.002241 77 Genes involved in Transport of the SLBP independent Mature mRNA www.broad.mit.e...
Broad REACTOME_RHO_GTPASE_CYCLE View Gene Set 0.00046 124 0.002536 78 Genes involved in Rho GTPase cycle www.broad.mit.e...
Broad REACTOME_GLUCOSE_TRANSPORT View Gene Set 0.0004955 38 0.002697 79 Genes involved in Glucose transport www.broad.mit.e...
Broad REACTOME_MTORC1_MEDIATED_SIGNALLING View Gene Set 0.0005452 11 0.002931 80 Genes involved in mTORC1-mediated signalling www.broad.mit.e...
Broad REACTOME_GENES_INVOLVED_IN_APOPTOTIC_CLEAVAGE_OF_CELLULAR_PROTEINS View Gene Set 0.0005769 37 0.003062 81 Genes involved in Apoptotic cleavage of cellular proteins www.broad.mit.e...
Broad REACTOME_TRKA_SIGNALLING_FROM_THE_PLASMA_MEMBRANE View Gene Set 0.0008012 103 0.004201 82 Genes involved in TRKA signalling from the plasma membrane www.broad.mit.e...
Broad REACTOME_SEMA3A_PLEXIN_REPULSION_SIGNALING_BY_INHIBITING_INTEGRIN_ADHESION View Gene Set 0.0008161 14 0.004228 83 Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion www.broad.mit.e...
Broad REACTOME_PURINE_METABOLISM View Gene Set 0.001218 30 0.006233 84 Genes involved in Purine metabolism www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_BH3_ONLY_PROTEINS View Gene Set 0.001314 16 0.006648 85 Genes involved in Activation of BH3-only proteins www.broad.mit.e...
Broad REACTOME_SEMA3A_PAK_DEPENDENT_AXON_REPULSION View Gene Set 0.001382 15 0.006908 86 Genes involved in Sema3A PAK dependent Axon repulsion www.broad.mit.e...
Broad REACTOME_TRNA_AMINOACYLATION View Gene Set 0.001432 40 0.007078 87 Genes involved in tRNA Aminoacylation www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA View Gene Set 0.001594 11 0.007791 88 Genes involved in Unwinding of DNA www.broad.mit.e...
Broad REACTOME_GLUCONEOGENESIS View Gene Set 0.0018 31 0.008698 89 Genes involved in Gluconeogenesis www.broad.mit.e...
Broad REACTOME_ZINC_INFLUX_INTO_CELLS_BY_THE_SLC39_GENES_FAMILY View Gene Set 0.001846 10 0.008817 90 Genes involved in Zinc influx into cells by the SLC39 Genes family www.broad.mit.e...
Broad REACTOME_P75_NTR_RECEPTOR_MEDIATED_SIGNALLING View Gene Set 0.002118 83 0.01001 91 Genes involved in p75 NTR receptor-mediated signalling www.broad.mit.e...
Broad REACTOME_ASSOCIATION_OF_TRIC_CCT_WITH_TARGET_PROTEINS_DURING_BIOSYNTHESIS View Gene Set 0.002397 29 0.0112 92 Genes involved in Association of TriC/CCT with target proteins during biosynthesis www.broad.mit.e...
Broad REACTOME_DEADENYLATION_OF_MRNA View Gene Set 0.002688 21 0.01243 93 Genes involved in Deadenylation of mRNA www.broad.mit.e...
Broad REACTOME_OPIOID_SIGNALLING View Gene Set 0.003039 83 0.0139 94 Genes involved in Opioid Signalling www.broad.mit.e...
Broad REACTOME_GLUCAGON_SIGNALING_IN_METABOLIC_REGULATION View Gene Set 0.003356 34 0.01519 95 Genes involved in Glucagon signaling in metabolic regulation www.broad.mit.e...
Broad REACTOME_MTOR_SIGNALLING View Gene Set 0.003663 27 0.01641 96 Genes involved in mTOR signalling www.broad.mit.e...
Broad REACTOME_SEMAPHORIN_INTERACTIONS View Gene Set 0.003854 66 0.01709 97 Genes involved in Semaphorin interactions www.broad.mit.e...
Broad REACTOME_CAM_PATHWAY View Gene Set 0.004018 26 0.01763 98 Genes involved in CaM pathway www.broad.mit.e...
Broad REACTOME_METAL_ION_SLC_TRANSPORTERS View Gene Set 0.004804 23 0.02086 99 Genes involved in Metal ion SLC transporters www.broad.mit.e...
Broad REACTOME_INHIBITION_OF_INSULIN_SECRETION_BY_ADRENALINE_NORADRENALINE View Gene Set 0.004867 30 0.02093 100 Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline www.broad.mit.e...
Broad REACTOME_SMOOTH_MUSCLE_CONTRACTION View Gene Set 0.005156 24 0.02195 101 Genes involved in Smooth Muscle Contraction www.broad.mit.e...
Broad REACTOME_LYSOSOME_VESICLE_BIOGENESIS View Gene Set 0.005359 24 0.02259 102 Genes involved in Lysosome Vesicle Biogenesis www.broad.mit.e...
Broad REACTOME_BETACATENIN_PHOSPHORYLATION_CASCADE View Gene Set 0.00564 13 0.02355 103 Genes involved in Beta-catenin phosphorylation cascade www.broad.mit.e...
Broad REACTOME_APOPTOTIC_EXECUTION_PHASE View Gene Set 0.006192 48 0.02548 104 Genes involved in Apoptotic execution phase www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE View Gene Set 0.006222 92 0.02548 104 Genes involved in Mitotic Prometaphase www.broad.mit.e...
Broad REACTOME_GS_ALPHA_MEDIATED_EVENTS_IN_GLUCAGON_SIGNALLING View Gene Set 0.006889 27 0.02795 106 Genes involved in G(s)-alpha mediated events in glucagon signalling www.broad.mit.e...
Broad REACTOME_INTRINSIC_PATHWAY_FOR_APOPTOSIS View Gene Set 0.007201 29 0.02894 107 Genes involved in Intrinsic Pathway for Apoptosis www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE View Gene Set 0.007482 103 0.02979 108 Genes involved in HIV Life Cycle www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_VITAMINS_AND_COFACTORS View Gene Set 0.007683 42 0.03031 109 Genes involved in Metabolism of vitamins and cofactors www.broad.mit.e...
Broad REACTOME_SEMA4D_IN_SEMAPHORIN_SIGNALING View Gene Set 0.007932 29 0.03081 110 Genes involved in Sema4D in semaphorin signaling www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_MRNA View Gene Set 0.007954 45 0.03081 110 Genes involved in Metabolism of mRNA www.broad.mit.e...
Broad REACTOME_G1_PHASE View Gene Set 0.008127 16 0.03106 112 Genes involved in G1 Phase www.broad.mit.e...
Broad REACTOME_SEMA4D_INDUCED_CELL_MIGRATION_AND_GROWTH_CONE_COLLAPSE View Gene Set 0.008162 24 0.03106 112 Genes involved in Sema4D induced cell migration and growth-cone collapse www.broad.mit.e...
Broad REACTOME_GLYCOLYSIS View Gene Set 0.008433 22 0.0317 114 Genes involved in Glycolysis www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_NITRIC_OXIDE View Gene Set 0.008624 13 0.0317 114 Genes involved in Metabolism of nitric oxide www.broad.mit.e...
Broad REACTOME_PEROXISOMAL_LIPID_METABOLISM View Gene Set 0.008498 20 0.0317 114 Genes involved in Peroxisomal lipid metabolism www.broad.mit.e...
Broad REACTOME_AMINO_ACID_SYNTHESIS_AND_INTERCONVERSION View Gene Set 0.008614 12 0.0317 114 Genes involved in Amino acid synthesis and interconversion (transamination) www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_GG_NER View Gene Set 0.009099 20 0.03316 118 Genes involved in Dual incision reaction in GG-NER www.broad.mit.e...
Broad REACTOME_UNFOLDED_PROTEIN_RESPONSE View Gene Set 0.00919 19 0.03321 119 Genes involved in Unfolded Protein Response www.broad.mit.e...
Broad REACTOME_THE_ROLE_OF_NEF_IN_HIV1_REPLICATION_AND_DISEASE_PATHOGENESIS View Gene Set 0.009509 28 0.03408 120 Genes involved in The role of Nef in HIV-1 replication and disease pathogenesis www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_KAINATE_RECEPTORS_UPON_GLUTAMATE_BINDING View Gene Set 0.00967 32 0.03436 121 Genes involved in Activation of Kainate Receptors upon glutamate binding www.broad.mit.e...
Broad REACTOME_PI3K_AKT_SIGNALLING View Gene Set 0.01073 37 0.03781 122 Genes involved in PI3K/AKT signalling www.broad.mit.e...
Broad REACTOME_P75NTR_SIGNALS_VIA_NFKB View Gene Set 0.01216 13 0.04252 123 Genes involved in p75NTR signals via NF-kB www.broad.mit.e...
Broad REACTOME_VITAMIN_B5_(PANTOTHENATE)_METABOLISM View Gene Set 0.01248 11 0.04328 124 Genes involved in Vitamin B5 (pantothenate) metabolism www.broad.mit.e...
Broad REACTOME_POST_TRANSLATIONAL_PROTEIN_MODIFICATION View Gene Set 0.01272 40 0.04377 125 Genes involved in Post-translational protein modification www.broad.mit.e...
Broad REACTOME_ZINC_TRANSPORTATION View Gene Set 0.01363 17 0.04652 126 Genes involved in Zinc transportation www.broad.mit.e...
Broad REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE View Gene Set 0.01394 90 0.0472 127 Genes involved in Late Phase of HIV Life Cycle www.broad.mit.e...
Broad REACTOME_APOPTOTIC_CLEAVAGE_OF_CELL_ADHESION_PROTEINS View Gene Set 0.01448 11 0.04827 128 Genes involved in Apoptotic cleavage of cell adhesion proteins www.broad.mit.e...
Broad REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH View Gene Set 0.01445 68 0.04827 128 Genes involved in NCAM signaling for neurite out-growth www.broad.mit.e...
Broad REACTOME_NEF_MEDIATES_DOWN_MODULATION_OF_CELL_SURFACE_RECEPTORS_BY_RECRUITING_THEM_TO_CLATHRIN_ADAPTERS View Gene Set 0.01497 21 0.0491 130 Genes involved in Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters www.broad.mit.e...
Broad REACTOME_PURINE_SALVAGE_REACTIONS View Gene Set 0.01507 12 0.0491 130 Genes involved in Purine salvage reactions www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM View Gene Set 0.015 22 0.0491 130 Genes involved in Pyrimidine metabolism www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad TCCAGAG MIR-518C View Gene Set 1.672e-09 127 3.695e-07 1 Targets of MicroRNA TCCAGAG MIR-518C www.broad.mit.e... MIR-518C...
Broad ACTGCCT MIR-34B View Gene Set 7.476e-07 190 8.261e-05 2 Targets of MicroRNA ACTGCCT MIR-34B www.broad.mit.e... MIR-34B...
Broad GGGACCA MIR-133A MIR-133B View Gene Set 1.577e-06 173 9.712e-05 3 Targets of MicroRNA GGGACCA MIR-133A MIR-133B www.broad.mit.e... MIR-133A... MIR-133B...
Broad TGTGTGA MIR-377 View Gene Set 1.758e-06 162 9.712e-05 3 Targets of MicroRNA TGTGTGA MIR-377 www.broad.mit.e... MIR-377...
Broad TTTTGAG MIR-373 View Gene Set 2.531e-06 189 0.0001119 5 Targets of MicroRNA TTTTGAG MIR-373 www.broad.mit.e... MIR-373...
Broad CTCAGGG MIR-125B MIR-125A View Gene Set 4.373e-06 277 0.0001611 6 Targets of MicroRNA CTCAGGG MIR-125B MIR-125A www.broad.mit.e... MIR-125B... MIR-125A...
Broad ATGTACA MIR-493 View Gene Set 1.017e-05 261 0.000321 7 Targets of MicroRNA ATGTACA MIR-493 www.broad.mit.e... MIR-493...
Broad ACTGCAG MIR-17-3P View Gene Set 2.708e-05 88 0.0007482 8 Targets of MicroRNA ACTGCAG MIR-17-3P www.broad.mit.e... MIR-17-3P...
Broad ATGAAGG MIR-205 View Gene Set 3.316e-05 128 0.0008143 9 Targets of MicroRNA ATGAAGG MIR-205 www.broad.mit.e... MIR-205...
Broad TTGCCAA MIR-182 View Gene Set 8.053e-05 274 0.00178 10 Targets of MicroRNA TTGCCAA MIR-182 www.broad.mit.e... MIR-182...
Broad GACTGTT MIR-212 MIR-132 View Gene Set 0.0001213 134 0.002436 11 Targets of MicroRNA GACTGTT MIR-212 MIR-132 www.broad.mit.e... MIR-212... MIR-132...
Broad CAGTGTT MIR-141 MIR-200A View Gene Set 0.0001633 262 0.002933 12 Targets of MicroRNA CAGTGTT MIR-141 MIR-200A www.broad.mit.e... MIR-141... MIR-200A...
Broad ACCATTT MIR-522 View Gene Set 0.0001725 137 0.002933 12 Targets of MicroRNA ACCATTT MIR-522 www.broad.mit.e... MIR-522...
Broad CACTGTG MIR-128A MIR-128B View Gene Set 0.0002154 276 0.00337 14 Targets of MicroRNA CACTGTG MIR-128A MIR-128B www.broad.mit.e... MIR-128A... MIR-128B...
Broad ACCAAAG MIR-9 View Gene Set 0.0002287 428 0.00337 14 Targets of MicroRNA ACCAAAG MIR-9 www.broad.mit.e... MIR-9...
Broad TATCTGG MIR-488 View Gene Set 0.0003074 49 0.004069 16 Targets of MicroRNA TATCTGG MIR-488 www.broad.mit.e... MIR-488...
Broad CAGCTTT MIR-320 View Gene Set 0.000313 220 0.004069 16 Targets of MicroRNA CAGCTTT MIR-320 www.broad.mit.e... MIR-320...
Broad AACATTC MIR-409-3P View Gene Set 0.0004074 115 0.004739 18 Targets of MicroRNA AACATTC MIR-409-3P www.broad.mit.e... MIR-409-3P...
Broad CAATGCA MIR-33 View Gene Set 0.000396 85 0.004739 18 Targets of MicroRNA CAATGCA MIR-33 www.broad.mit.e... MIR-33...
Broad CTGAGCC MIR-24 View Gene Set 0.0004723 195 0.005219 20 Targets of MicroRNA CTGAGCC MIR-24 www.broad.mit.e... MIR-24...
Broad CCTGCTG MIR-214 View Gene Set 0.0005135 194 0.005403 21 Targets of MicroRNA CCTGCTG MIR-214 www.broad.mit.e... MIR-214...
Broad ACATTCC MIR-1 MIR-206 View Gene Set 0.0005533 248 0.005558 22 Targets of MicroRNA ACATTCC MIR-1 MIR-206 www.broad.mit.e... MIR-1... MIR-206...
Broad TTTGCAC MIR-19A MIR-19B View Gene Set 0.0006149 440 0.005909 23 Targets of MicroRNA TTTGCAC MIR-19A MIR-19B www.broad.mit.e... MIR-19A... MIR-19B...
Broad GAGCCAG MIR-149 View Gene Set 0.0007321 125 0.006741 24 Targets of MicroRNA GAGCCAG MIR-149 www.broad.mit.e... MIR-149...
Broad TGGTGCT MIR-29A MIR-29B MIR-29C View Gene Set 0.00113 436 0.00999 25 Targets of MicroRNA TGGTGCT MIR-29A MIR-29B MIR-29C www.broad.mit.e... MIR-29A... MIR-29B... MIR-29C...
Broad AGGGCAG MIR-18A View Gene Set 0.001216 116 0.01034 26 Targets of MicroRNA AGGGCAG MIR-18A www.broad.mit.e... MIR-18A...
Broad TCTATGA MIR-376A MIR-376B View Gene Set 0.001359 71 0.01112 27 Targets of MicroRNA TCTATGA MIR-376A MIR-376B www.broad.mit.e... MIR-376A... MIR-376B...
Broad TCCAGAT MIR-516-5P View Gene Set 0.001476 93 0.01165 28 Targets of MicroRNA TCCAGAT MIR-516-5P www.broad.mit.e... MIR-516-5P...
Broad TAATGTG MIR-323 View Gene Set 0.001659 135 0.01264 29 Targets of MicroRNA TAATGTG MIR-323 www.broad.mit.e... MIR-323...
Broad ACTGTAG MIR-139 View Gene Set 0.00183 111 0.01348 30 Targets of MicroRNA ACTGTAG MIR-139 www.broad.mit.e... MIR-139...
Broad TGCCTTA MIR-124A View Gene Set 0.001982 471 0.01413 31 Targets of MicroRNA TGCCTTA MIR-124A www.broad.mit.e... MIR-124A...
Broad CCATCCA MIR-432 View Gene Set 0.002104 51 0.01453 32 Targets of MicroRNA CCATCCA MIR-432 www.broad.mit.e... MIR-432...
Broad TTGGGAG MIR-150 View Gene Set 0.002194 65 0.01469 33 Targets of MicroRNA TTGGGAG MIR-150 www.broad.mit.e... MIR-150...
Broad TGTTTAC MIR-30A-5P MIR-30C MIR-30D MIR-30B MIR-30E-5P View Gene Set 0.002413 492 0.01523 34 Targets of MicroRNA TGTTTAC MIR-30A-5P MIR-30C MIR-30D MIR-30B MIR-30E-5P www.broad.mit.e... MIR-30A-5P... MIR-30C... MIR-30D... MIR-30B... MIR-30E-5P...
Broad GCTGAGT MIR-512-5P View Gene Set 0.002381 48 0.01523 34 Targets of MicroRNA GCTGAGT MIR-512-5P www.broad.mit.e... MIR-512-5P...
Broad CCAGGTT MIR-490 View Gene Set 0.00254 52 0.01559 36 Targets of MicroRNA CCAGGTT MIR-490 www.broad.mit.e... MIR-490...
Broad CCCACAT MIR-299-3P View Gene Set 0.002906 48 0.01615 37 Targets of MicroRNA CCCACAT MIR-299-3P www.broad.mit.e... MIR-299-3P...
Broad AACGGTT MIR-451 View Gene Set 0.002923 9 0.01615 37 Targets of MicroRNA AACGGTT MIR-451 www.broad.mit.e... MIR-451...
Broad AACTGAC MIR-223 View Gene Set 0.002901 84 0.01615 37 Targets of MicroRNA AACTGAC MIR-223 www.broad.mit.e... MIR-223...
Broad GACAATC MIR-219 View Gene Set 0.002765 124 0.01615 37 Targets of MicroRNA GACAATC MIR-219 www.broad.mit.e... MIR-219...
Broad GTGCCTT MIR-506 View Gene Set 0.0032 605 0.01725 41 Targets of MicroRNA GTGCCTT MIR-506 www.broad.mit.e... MIR-506...
Broad GTACAGG MIR-486 View Gene Set 0.003855 45 0.02029 42 Targets of MicroRNA GTACAGG MIR-486 www.broad.mit.e... MIR-486...
Broad GTGTTGA MIR-505 View Gene Set 0.00409 85 0.02102 43 Targets of MicroRNA GTGTTGA MIR-505 www.broad.mit.e... MIR-505...
Broad GGCAGCT MIR-22 View Gene Set 0.004405 198 0.02213 44 Targets of MicroRNA GGCAGCT MIR-22 www.broad.mit.e... MIR-22...
Broad GGGATGC MIR-324-5P View Gene Set 0.004633 44 0.02275 45 Targets of MicroRNA GGGATGC MIR-324-5P www.broad.mit.e... MIR-324-5P...
Broad TATTATA MIR-374 View Gene Set 0.005381 237 0.0253 46 Targets of MicroRNA TATTATA MIR-374 www.broad.mit.e... MIR-374...
Broad ACACTAC MIR-142-3P View Gene Set 0.005293 110 0.0253 46 Targets of MicroRNA ACACTAC MIR-142-3P www.broad.mit.e... MIR-142-3P...
Broad TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D View Gene Set 0.006217 418 0.02748 48 Targets of MicroRNA TGAATGT MIR-181A MIR-181B MIR-181C MIR-181D www.broad.mit.e... MIR-181A... MIR-181B... MIR-181C... MIR-181D...
Broad TCTGGAC MIR-198 View Gene Set 0.00606 69 0.02748 48 Targets of MicroRNA TCTGGAC MIR-198 www.broad.mit.e... MIR-198...
Broad ATGCAGT MIR-217 View Gene Set 0.006161 93 0.02748 48 Targets of MicroRNA ATGCAGT MIR-217 www.broad.mit.e... MIR-217...
Broad GCACCTT MIR-18A MIR-18B View Gene Set 0.006743 90 0.02922 51 Targets of MicroRNA GCACCTT MIR-18A MIR-18B www.broad.mit.e... MIR-18A... MIR-18B...
Broad GTCTTCC MIR-7 View Gene Set 0.007484 132 0.03106 52 Targets of MicroRNA GTCTTCC MIR-7 www.broad.mit.e... MIR-7...
Broad ATGTTTC MIR-494 View Gene Set 0.007588 136 0.03106 52 Targets of MicroRNA ATGTTTC MIR-494 www.broad.mit.e... MIR-494...
Broad CTCAAGA MIR-526B View Gene Set 0.007516 64 0.03106 52 Targets of MicroRNA CTCAAGA MIR-526B www.broad.mit.e... MIR-526B...
Broad ACTTTAT MIR-142-5P View Gene Set 0.00827 250 0.03323 55 Targets of MicroRNA ACTTTAT MIR-142-5P www.broad.mit.e... MIR-142-5P...
Broad TGCTGCT MIR-15A MIR-16 MIR-15B MIR-195 MIR-424 MIR-497 View Gene Set 0.009169 512 0.03618 56 Targets of MicroRNA TGCTGCT MIR-15A MIR-16 MIR-15B MIR-195 MIR-424 MIR-497 www.broad.mit.e... MIR-15A... MIR-16... MIR-15B... MIR-195... MIR-424... MIR-497...
Broad GTGTGAG MIR-342 View Gene Set 0.009839 60 0.03815 57 Targets of MicroRNA GTGTGAG MIR-342 www.broad.mit.e... MIR-342...
Broad CCACACA MIR-147 View Gene Set 0.01223 56 0.04662 58 Targets of MicroRNA CCACACA MIR-147 www.broad.mit.e... MIR-147...
Broad TTGGAGA MIR-515-5P MIR-519E View Gene Set 0.01257 120 0.04692 59 Targets of MicroRNA TTGGAGA MIR-515-5P MIR-519E www.broad.mit.e... MIR-515-5P... MIR-519E...
Broad CCAGGGG MIR-331 View Gene Set 0.01274 83 0.04692 59 Targets of MicroRNA CCAGGGG MIR-331 www.broad.mit.e... MIR-331...
Broad CACTGCC MIR-34A MIR-34C MIR-449 View Gene Set 0.0133 249 0.0474 61 Targets of MicroRNA CACTGCC MIR-34A MIR-34C MIR-449 www.broad.mit.e... MIR-34A... MIR-34C... MIR-449...
Broad GCTCTTG MIR-335 View Gene Set 0.01328 70 0.0474 61 Targets of MicroRNA GCTCTTG MIR-335 www.broad.mit.e... MIR-335...
Broad ACAACTT MIR-382 View Gene Set 0.01423 64 0.04991 63 Targets of MicroRNA ACAACTT MIR-382 www.broad.mit.e... MIR-382...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GGGCGGR_V$SP1_Q6 View Gene Set 4.764e-27 2120 2.93e-24 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad CACGTG_V$MYC_Q2 View Gene Set 2.75e-21 734 8.457e-19 2 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad GCCATNTTG_V$YY1_Q6 View Gene Set 5.497e-16 289 1.127e-13 3 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTG which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02 View Gene Set 5.812e-13 784 8.936e-11 4 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6 View Gene Set 2.331e-12 580 2.867e-10 5 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$USF_01 View Gene Set 1.081e-10 186 1.108e-08 6 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRYCACGTGRYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MAX_01 View Gene Set 2.762e-10 194 2.427e-08 7 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X www.broad.mit.e...
Broad V$YY1_Q6 View Gene Set 3.689e-10 166 2.836e-08 8 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$MYCMAX_01 View Gene Set 5.718e-10 189 3.907e-08 9 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad V$USF_Q6 View Gene Set 1.957e-09 178 1.204e-07 10 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GYCACGTGNC. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGCNKCCATNK_UNKNOWN View Gene Set 6.517e-09 84 3.644e-07 11 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNKCCATNK. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q4_01 View Gene Set 1.15e-08 171 5.895e-07 12 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$NFMUE1_Q6 View Gene Set 2.186e-08 175 1.034e-06 13 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGCCATCT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$YY1_02 View Gene Set 4.251e-08 168 1.868e-06 14 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNCGGCCATCTTGNCTSNW which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$E2F1DP1RB_01 View Gene Set 5.87e-08 168 2.407e-06 15 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad V$E2F_Q3 View Gene Set 7.193e-08 162 2.765e-06 16 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad KCCGNSWTTT_UNKNOWN View Gene Set 9.664e-08 76 3.496e-06 17 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KCCGNSWTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad SMTTTTGT_UNKNOWN View Gene Set 2.067e-07 319 7.064e-06 18 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif SMTTTTGT. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$ARNT_01 View Gene Set 2.724e-07 196 8.734e-06 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NDDNNCACGTGNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...
Broad CTTTGT_V$LEF1_Q2 View Gene Set 2.84e-07 1458 8.734e-06 19 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGT which matches annotation for LEF1: lymphoid enhancer-binding factor 1 www.broad.mit.e...
Broad GGGAGGRR_V$MAZ_Q6 View Gene Set 3.964e-07 1701 1.161e-05 21 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAGGRR which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor) www.broad.mit.e...
Broad V$E2F_02 View Gene Set 4.656e-07 169 1.301e-05 22 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1DP1_01 View Gene Set 1.152e-06 169 2.833e-05 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$E2F1DP2_01 View Gene Set 1.152e-06 169 2.833e-05 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad V$E2F4DP2_01 View Gene Set 1.152e-06 169 2.833e-05 23 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2) www.broad.mit.e...
Broad GGCNNMSMYNTTG_UNKNOWN View Gene Set 1.359e-06 56 3.214e-05 26 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNNMSMYNTTG. Motif does not match any known transcription factor www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01 View Gene Set 1.52e-06 122 3.463e-05 27 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma) www.broad.mit.e...
Broad V$E2F4DP1_01 View Gene Set 1.844e-06 174 4.05e-05 28 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$ZF5_B View Gene Set 2.055e-06 184 4.358e-05 29 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NRNGNGCGCGCWN which matches annotation for ZFP161: zinc finger protein 161 homolog (mouse) www.broad.mit.e...
Broad V$E2F1_Q3 View Gene Set 2.137e-06 176 4.381e-05 30 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$MYCMAX_03 View Gene Set 2.302e-06 187 4.567e-05 31 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNNNCACGTGNNNNNNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad V$USF2_Q6 View Gene Set 3.659e-06 182 7.033e-05 32 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CASGYG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6 View Gene Set 3.825e-06 165 7.085e-05 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_03 View Gene Set 3.917e-06 171 7.085e-05 33 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q2 View Gene Set 4.176e-06 120 7.337e-05 35 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01 View Gene Set 5.324e-06 830 9.096e-05 36 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad CCCNNGGGAR_V$OLF1_01 View Gene Set 5.5e-06 238 9.142e-05 37 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCCNNGGGAR which matches annotation for EBF2: early B-cell factor 2 www.broad.mit.e...
Broad V$MYC_Q2 View Gene Set 5.721e-06 135 9.258e-05 38 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTGS which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian) www.broad.mit.e...
Broad V$E2F_Q4 View Gene Set 7.48e-06 166 0.000118 39 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F1_Q4_01 View Gene Set 9.089e-06 167 0.0001397 40 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$USF_Q6_01 View Gene Set 1.063e-05 168 0.0001594 41 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NRCCACGTGASN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$USF_C View Gene Set 1.339e-05 211 0.0001961 42 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NCACGTGN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AP1_Q4 View Gene Set 1.861e-05 212 0.0002602 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RGTGACTMANN which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$E2F1_Q6 View Gene Set 1.856e-05 167 0.0002602 43 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$E2F_Q3_01 View Gene Set 2.415e-05 171 0.00033 45 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$NRF2_Q4 View Gene Set 3.225e-05 190 0.0004311 46 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGCTGAGTCAKN which matches annotation for NFE2L2: nuclear factor (erythroid-derived 2)-like 2 www.broad.mit.e...
Broad V$NMYC_01 View Gene Set 3.802e-05 201 0.0004872 47 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNCCACGTGNNN which matches annotation for MYCN: v-myc myelocytomatosis viral related oncogene neuroblastoma derived (avian) www.broad.mit.e...
Broad V$E2F1_Q6_01 View Gene Set 3.735e-05 177 0.0004872 47 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$STAT1_02 View Gene Set 4.137e-05 179 0.0005089 49 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CANTTCCS which matches annotation for STAT1: signal transducer and activator of transcription 1 91kDa www.broad.mit.e...
Broad TGCGCANK_UNKNOWN View Gene Set 4.073e-05 361 0.0005089 49 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TGCGCANK. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$MYCMAX_B View Gene Set 4.234e-05 193 0.0005105 51 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X www.broad.mit.e...
Broad ACAWNRNSRCGG_UNKNOWN View Gene Set 4.644e-05 50 0.0005388 52 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACAWNRNSRCGG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$TCF11MAFG_01 View Gene Set 4.57e-05 158 0.0005388 52 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNATGACTCAGCANTTNNG which matches annotation for TCF11<br> MAFG: v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) www.broad.mit.e...
Broad V$NFY_01 View Gene Set 4.943e-05 178 0.0005629 54 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNRRCCAATSRGNNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B View Gene Set 6.849e-05 512 0.0007659 55 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$E2F1_Q4 View Gene Set 7.199e-05 178 0.0007906 56 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad V$USF_02 View Gene Set 9.963e-05 197 0.001075 57 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNRNCACGTGNYNN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E2F_Q6_01 View Gene Set 0.0001613 167 0.00171 58 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1 www.broad.mit.e...
Broad V$NRF2_01 View Gene Set 0.000171 166 0.001732 59 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif ACCGGAAGNG which matches annotation for GABPB1: GA binding protein transcription factor beta subunit 1. www.broad.mit.e...
Broad V$MAZR_01 View Gene Set 0.0001692 167 0.001732 59 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NSGGGGGGGGMCN. Motif does not match any known transcription factor www.broad.mit.e...
Broad GGGTGGRR_V$PAX4_03 View Gene Set 0.0001718 994 0.001732 59 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGTGGRR which matches annotation for PAX4: paired box gene 4 www.broad.mit.e...
Broad V$E4F1_Q6 View Gene Set 0.0001922 203 0.001877 62 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SYTACGTCAC which matches annotation for E4F1: E4F transcription factor 1 www.broad.mit.e...
Broad GTGACGY_V$E4F1_Q6 View Gene Set 0.0001914 462 0.001877 62 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GTGACGY which matches annotation for E4F1: E4F transcription factor 1 www.broad.mit.e...
Broad V$ZF5_01 View Gene Set 0.0002124 180 0.002041 64 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GSGCGCGR which matches annotation for ZFP161: zinc finger protein 161 homolog (mouse) www.broad.mit.e...
Broad ACTAYRNNNCCCR_UNKNOWN View Gene Set 0.0002213 293 0.002094 65 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ACTAYRNNNCCCR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AR_01 View Gene Set 0.0002459 106 0.002257 66 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGTACANNRTGTTCT which matches annotation for AR: androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) www.broad.mit.e...
Broad YGCGYRCGC_UNKNOWN View Gene Set 0.0002429 207 0.002257 66 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCGYRCGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SPZ1_01 View Gene Set 0.0002548 189 0.002305 68 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif DNNGGRGGGWWNNNN which matches annotation for SPZ1: spermatogenic leucine zipper 1 www.broad.mit.e...
Broad ATCMNTCCGY_UNKNOWN View Gene Set 0.0002961 36 0.002565 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif ATCMNTCCGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SOX9_B1 View Gene Set 0.0002965 183 0.002565 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNAACAATRGNN which matches annotation for SOX9: SRY (sex determining region Y)-box 9 (campomelic dysplasia autosomal sex-reversal) www.broad.mit.e...
Broad V$ARNT_02 View Gene Set 0.0003003 179 0.002565 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNRTCACGTGAYNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator www.broad.mit.e...
Broad V$E2F1_Q3_01 View Gene Set 0.0002897 188 0.002565 69 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGGCGCGRAANNGNM which matches annotation for E2F1: E2F transcription factor 1 www.broad.mit.e...
Broad GGGYGTGNY_UNKNOWN View Gene Set 0.0003187 487 0.002685 73 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGGYGTGNY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$PAX4_01 View Gene Set 0.0004368 201 0.00363 74 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGNVGTCANGCGTGNNSNNYN which matches annotation for PAX4: paired box gene 4 www.broad.mit.e...
Broad V$AP1FJ_Q2 View Gene Set 0.0004579 223 0.003754 75 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RSTGACTNMNW which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$ELK1_02 View Gene Set 0.0004801 170 0.003885 76 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNCCGGAARTNN which matches annotation for ELK1: ELK1 member of ETS oncogene family www.broad.mit.e...
Broad V$PAX5_01 View Gene Set 0.0005969 115 0.004767 77 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif BCNNNRNGCANBGNTGNRTAGCSGCHNB which matches annotation for PAX5: paired box gene 5 (B-cell lineage specific activator) www.broad.mit.e...
Broad V$CACCCBINDINGFACTOR_Q6 View Gene Set 0.0006315 203 0.004925 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CANCCNNWGGGTGDGG. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGANNYRGCA_V$TCF11MAFG_01 View Gene Set 0.0006326 218 0.004925 78 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGANNYRGCA which matches annotation for NFE2L1: nuclear factor (erythroid-derived 2)-like 1<br> MAFG: v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) www.broad.mit.e...
Broad V$HNF4_01 View Gene Set 0.000656 193 0.005043 80 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNRGGNCAAAGKTCANNN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha www.broad.mit.e...
Broad TGANTCA_V$AP1_C View Gene Set 0.0006693 850 0.005082 81 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGANTCA which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad WTTGKCTG_UNKNOWN View Gene Set 0.0007169 387 0.005377 82 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif WTTGKCTG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$IRF7_01 View Gene Set 0.0007312 201 0.005383 83 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TNSGAAWNCGAAANTNNN which matches annotation for IRF7: interferon regulatory factor 7 www.broad.mit.e...
Broad V$EGR_Q6 View Gene Set 0.0007353 208 0.005383 83 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GTGGGSGCRRS which matches annotation for EGR1: early growth response 1<br> EGR2: early growth response 2 (Krox-20 homolog Drosophila)<br> EGR3: early growth response 3 www.broad.mit.e...
Broad V$PTF1BETA_Q6 View Gene Set 0.0007524 179 0.005444 85 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GRGAAAMBBWCAGS which matches annotation for PTF1A: pancreas specific transcription factor 1a www.broad.mit.e...
Broad V$E2F_01 View Gene Set 0.0008362 55 0.00598 86 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TWSGCGCGAAAAYKR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$WHN_B View Gene Set 0.0008484 186 0.005998 87 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif ANNGACGCTNN which matches annotation for FOXN1: forkhead box N1 www.broad.mit.e...
Broad V$GABP_B View Gene Set 0.0008899 162 0.006174 88 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2 www.broad.mit.e...
Broad V$NFY_Q6_01 View Gene Set 0.0008934 185 0.006174 88 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNNRRCCAATSR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AP1_Q6 View Gene Set 0.0009738 199 0.006654 90 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNTGACTCANN which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad GCGNNANTTCC_UNKNOWN View Gene Set 0.001048 85 0.007033 91 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGNNANTTCC. Motif does not match any known transcription factor www.broad.mit.e...
Broad TTCNRGNNNNTTC_V$HSF_Q6 View Gene Set 0.001052 111 0.007033 91 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTCNRGNNNNTTC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CREL_01 View Gene Set 0.001155 203 0.007636 93 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGGRNTTTCC which matches annotation for REL: v-rel reticuloendotheliosis viral oncogene homolog (avian) www.broad.mit.e...
Broad GGCNRNWCTTYS_UNKNOWN View Gene Set 0.001182 52 0.00772 94 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGCNRNWCTTYS. Motif does not match any known transcription factor www.broad.mit.e...
Broad TAANNYSGCG_UNKNOWN View Gene Set 0.001193 60 0.00772 94 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TAANNYSGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SREBP1_Q6 View Gene Set 0.001216 195 0.007788 96 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACSCCA which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad V$NRF1_Q6 View Gene Set 0.001247 151 0.007905 97 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGCATGCGCR which matches annotation for NRF1: nuclear respiratory factor 1 www.broad.mit.e...
Broad V$STAT3_02 View Gene Set 0.001271 113 0.007979 98 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTTCCN which matches annotation for STAT3: signal transducer and activator of transcription 3 (acute-phase response factor) www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN View Gene Set 0.001436 130 0.008924 99 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$HNF4_01_B View Gene Set 0.001525 184 0.009376 100 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NRGGNCAAAGGTCAN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha www.broad.mit.e...
Broad CCAWNWWNNNGGC_UNKNOWN View Gene Set 0.001945 56 0.01185 101 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CCAWNWWNNNGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad CGGAARNGGCNG_UNKNOWN View Gene Set 0.001971 33 0.01188 102 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CGGAARNGGCNG. Motif does not match any known transcription factor www.broad.mit.e...
Broad TGASTMAGC_V$NFE2_01 View Gene Set 0.002024 151 0.01208 103 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGASTMAGC which matches annotation for NFE2: nuclear factor (erythroid-derived 2) 45kDa www.broad.mit.e...
Broad AAGWWRNYGGC_UNKNOWN View Gene Set 0.002374 85 0.01404 104 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif AAGWWRNYGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad GCGSCMNTTT_UNKNOWN View Gene Set 0.002475 49 0.0145 105 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GCGSCMNTTT. Motif does not match any known transcription factor www.broad.mit.e...
Broad CTGCAGY_UNKNOWN View Gene Set 0.0028 570 0.01624 106 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CTGCAGY. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$HSF_Q6 View Gene Set 0.002887 140 0.0165 107 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTCCMGARGYTTC. Motif does not match any known transcription factor www.broad.mit.e...
Broad RNGTGGGC_UNKNOWN View Gene Set 0.002897 557 0.0165 107 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RNGTGGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$AP1_Q2 View Gene Set 0.003012 216 0.01699 109 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RSTGACTNANW which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad TMTCGCGANR_UNKNOWN View Gene Set 0.003041 100 0.017 110 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TMTCGCGANR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$SREBP1_01 View Gene Set 0.003074 133 0.01703 111 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1 www.broad.mit.e...
Broad TGACCTY_V$ERR1_Q2 View Gene Set 0.003101 772 0.01703 111 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACCTY which matches annotation for ESRRA: estrogen-related receptor alpha www.broad.mit.e...
Broad V$YY1_01 View Gene Set 0.003149 190 0.01714 113 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNCCATNTWNNNWN which matches annotation for YY1: YY1 transcription factor www.broad.mit.e...
Broad V$AHR_Q5 View Gene Set 0.00324 153 0.01736 114 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTNGCGTGNNN which matches annotation for AHR: aryl hydrocarbon receptor www.broad.mit.e...
Broad YGCANTGCR_UNKNOWN View Gene Set 0.003246 93 0.01736 114 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCANTGCR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CACBINDINGPROTEIN_Q6 View Gene Set 0.003351 175 0.01769 116 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GRGGSTGGG. Motif does not match any known transcription factor www.broad.mit.e...
Broad WGGAATGY_V$TEF1_Q6 View Gene Set 0.003366 281 0.01769 116 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGGAATGY which matches annotation for TEAD1: TEA domain family member 1 (SV40 transcriptional enhancer factor) www.broad.mit.e...
Broad V$TCF1P_Q6 View Gene Set 0.003582 181 0.01867 118 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GKCRGKTT which matches annotation for TCF1: transcription factor 1 hepatic; LF-B1 hepatic nuclear factor (HNF1) albumin proximal factor www.broad.mit.e...
Broad V$ALPHACP1_01 View Gene Set 0.003758 186 0.01942 119 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGCCAATGAG which matches annotation for PCBP1: poly(rC) binding protein 1 www.broad.mit.e...
Broad V$E4BP4_01 View Gene Set 0.004064 159 0.02083 120 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NRTTAYGTAAYN which matches annotation for NFIL3: nuclear factor interleukin 3 regulated www.broad.mit.e...
Broad V$TEL2_Q6 View Gene Set 0.004123 158 0.02093 121 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif YTACTTCCTG which matches annotation for ETV7: ets variant gene 7 (TEL2 oncogene) www.broad.mit.e...
Broad V$GR_Q6_01 View Gene Set 0.004152 201 0.02093 121 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNTGTYCT which matches annotation for NR3C1: nuclear receptor subfamily 3 group C member 1 (glucocorticoid receptor) www.broad.mit.e...
Broad GCANCTGNY_V$MYOD_Q6 View Gene Set 0.004219 673 0.0211 123 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCANCTGNY which matches annotation for MYOD1: myogenic differentiation 1 www.broad.mit.e...
Broad V$NFY_Q6 View Gene Set 0.004421 187 0.02193 124 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TRRCCAATSRN. Motif does not match any known transcription factor www.broad.mit.e...
Broad CRGAARNNNNCGA_UNKNOWN View Gene Set 0.004604 34 0.02265 125 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CRGAARNNNNCGA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$COUP_01 View Gene Set 0.005221 188 0.02528 126 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAMCTTTGMMCYT which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha www.broad.mit.e...
Broad MCAATNNNNNGCG_UNKNOWN View Gene Set 0.005206 62 0.02528 126 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif MCAATNNNNNGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NFKB_Q6_01 View Gene Set 0.00527 173 0.02532 128 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NNNNKGGRAANTCCCN. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$T3R_Q6 View Gene Set 0.00576 188 0.02746 129 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif MNTGWCCTN. Motif does not match any known transcription factor www.broad.mit.e...
Broad TTCYRGAA_UNKNOWN View Gene Set 0.006537 221 0.03093 130 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTCYRGAA. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$CETS1P54_01 View Gene Set 0.006969 183 0.03272 131 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCMGGAWGYN which matches annotation for ETS1: v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) www.broad.mit.e...
Broad V$GRE_C View Gene Set 0.007348 96 0.03398 132 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGTACAANNTGTYCTK which matches annotation for NR3C1: nuclear receptor subfamily 3 group C member 1 (glucocorticoid receptor) www.broad.mit.e...
Broad V$BACH2_01 View Gene Set 0.007293 214 0.03398 132 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SRTGAGTCANC which matches annotation for BACH2: BTB and CNC homology 1 basic leucine zipper transcription factor 2 www.broad.mit.e...
Broad V$ATF4_Q2 View Gene Set 0.007475 188 0.03431 134 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CVTGACGYMABG which matches annotation for ATF4: activating transcription factor 4 (tax-responsive enhancer element B67) www.broad.mit.e...
Broad V$AP4_Q5 View Gene Set 0.007608 206 0.03466 135 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VDCAGCTGNN which matches annotation for TFAP4: transcription factor AP-4 (activating enhancer binding protein 4) www.broad.mit.e...
Broad V$XBP1_01 View Gene Set 0.007868 103 0.03558 136 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNGNTGACGTGKNNNWT which matches annotation for XBP1: X-box binding protein 1 www.broad.mit.e...
Broad V$CP2_01 View Gene Set 0.007927 194 0.03559 137 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCHCDAMCCAG which matches annotation for TFCP2: transcription factor CP2 www.broad.mit.e...
Broad GATGKMRGCG_UNKNOWN View Gene Set 0.007994 47 0.03563 138 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATGKMRGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$E47_01 View Gene Set 0.008239 201 0.03619 139 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VSNGCAGGTGKNCNN which matches annotation for TCF3: transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) www.broad.mit.e...
Broad V$AP1_Q2_01 View Gene Set 0.008198 221 0.03619 139 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACTCANNSKN which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$NFE2_01 View Gene Set 0.008967 208 0.03911 141 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGCTGAGTCAY which matches annotation for NFE2: nuclear factor (erythroid-derived 2) 45kDa www.broad.mit.e...
Broad V$SP1_Q6 View Gene Set 0.009253 177 0.04008 142 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGGGGGCGGGGYN which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...
Broad V$AP1_Q6_01 View Gene Set 0.009749 201 0.04193 143 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTGACTCAN which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad V$CREB_Q3 View Gene Set 0.009935 187 0.04214 144 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGTCAN which matches annotation for CREB1: cAMP responsive element binding protein 1 www.broad.mit.e...
Broad WWTAAGGC_UNKNOWN View Gene Set 0.009935 118 0.04214 144 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif WWTAAGGC. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$P300_01 View Gene Set 0.01067 182 0.04464 146 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGGGAGTNNNNS which matches annotation for PCAF: p300/CBP-associated factor www.broad.mit.e...
Broad V$AP1_01 View Gene Set 0.01065 204 0.04464 146 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNTGAGTCAKCN which matches annotation for JUN: jun oncogene www.broad.mit.e...
Broad CCAATNNSNNNGCG_UNKNOWN View Gene Set 0.01081 45 0.04492 148 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CCAATNNSNNNGCG. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$STAT6_01 View Gene Set 0.0111 194 0.04582 149 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NAWTTCCN which matches annotation for STAT6: signal transducer and activator of transcription 6 interleukin-4 induced www.broad.mit.e...
Broad V$NFKAPPAB65_01 View Gene Set 0.01133 186 0.04644 150 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGRATTTCC which matches annotation for RELA: v-rel reticuloendotheliosis viral oncogene homolog A nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 p65 (avian) www.broad.mit.e...
Broad V$AR_Q6 View Gene Set 0.01169 174 0.04763 151 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WGAGCANRN which matches annotation for AR: androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) www.broad.mit.e...
Broad V$AP2REP_01 View Gene Set 0.01201 133 0.04829 152 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CAGTGGG which matches annotation for KLF12: Kruppel-like factor 12 www.broad.mit.e...
Broad RYTGCNWTGGNR_UNKNOWN View Gene Set 0.01198 85 0.04829 152 Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RYTGCNWTGGNR. Motif does not match any known transcription factor www.broad.mit.e...
Broad V$NGFIC_01 View Gene Set 0.01211 181 0.04836 154 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WTGCGTGGGYGG which matches annotation for EGR4: early growth response 4 www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MORF_RAD23A View Gene Set 8.71e-46 316 3.719e-43 1 Neighborhood of RAD23A www.broad.mit.e...
Broad MORF_BUB3 View Gene Set 6.041e-45 256 1.266e-42 2 Neighborhood of BUB3 www.broad.mit.e...
Broad MORF_UBE2I View Gene Set 8.898e-45 208 1.266e-42 2 Neighborhood of UBE2I www.broad.mit.e...
Broad MORF_RAN View Gene Set 1.027e-43 242 1.096e-41 4 Neighborhood of RAN www.broad.mit.e...
Broad MORF_GNB1 View Gene Set 3.121e-43 276 2.665e-41 5 Neighborhood of GNB1 www.broad.mit.e...
Broad MORF_NPM1 View Gene Set 1.411e-41 152 1.004e-39 6 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_SOD1 View Gene Set 1.157e-40 247 7.057e-39 7 Neighborhood of SOD1 www.broad.mit.e...
Broad MORF_CSNK2B View Gene Set 4.911e-39 256 2.621e-37 8 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_EIF3S2 View Gene Set 2.512e-38 220 1.192e-36 9 Neighborhood of EIF3S2 www.broad.mit.e...
Broad MORF_DEK View Gene Set 5.468e-38 229 2.335e-36 10 Neighborhood of DEK www.broad.mit.e...
Broad MORF_ANP32B View Gene Set 3.03e-37 174 1.176e-35 11 Neighborhood of ANP32B www.broad.mit.e...
Broad MORF_ACTG1 View Gene Set 6.723e-37 134 2.392e-35 12 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_HDAC1 View Gene Set 9.197e-36 222 2.805e-34 13 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_ACP1 View Gene Set 8.663e-36 178 2.805e-34 13 Neighborhood of ACP1 www.broad.mit.e...
Broad MORF_NME2 View Gene Set 3.075e-35 145 8.754e-34 15 Neighborhood of NME2 www.broad.mit.e...
Broad MORF_EIF4A2 View Gene Set 1.702e-32 120 4.542e-31 16 Neighborhood of EIF4A2 www.broad.mit.e...
Broad MORF_AP2M1 View Gene Set 2.59e-32 197 6.505e-31 17 Neighborhood of AP2M1 www.broad.mit.e...
Broad MORF_XRCC5 View Gene Set 1.33e-31 210 3.155e-30 18 Neighborhood of XRCC5 www.broad.mit.e...
Broad MORF_RAD21 View Gene Set 2.031e-30 157 4.565e-29 19 Neighborhood of RAD21 www.broad.mit.e...
Broad MORF_CTBP1 View Gene Set 5.683e-30 149 1.213e-28 20 Neighborhood of CTBP1 www.broad.mit.e...
Broad MORF_G22P1 View Gene Set 4.45e-29 145 9.049e-28 21 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_DAP3 View Gene Set 8.478e-29 175 1.645e-27 22 Neighborhood of DAP3 www.broad.mit.e...
Broad MORF_HDAC2 View Gene Set 1.169e-28 256 2.17e-27 23 Neighborhood of HDAC2 www.broad.mit.e...
Broad MORF_FBL View Gene Set 7.469e-28 121 1.329e-26 24 Neighborhood of FBL www.broad.mit.e...
Broad MORF_TPT1 View Gene Set 9.699e-28 100 1.657e-26 25 Neighborhood of TPT1 www.broad.mit.e...
Broad MORF_PRKDC View Gene Set 2.339e-26 173 3.842e-25 26 Neighborhood of PRKDC www.broad.mit.e...
Broad GCM_APEX1 View Gene Set 2.556e-26 102 4.042e-25 27 Neighborhood of APEX1 www.broad.mit.e...
Broad GNF2_EIF3S6 View Gene Set 3.8e-26 109 5.795e-25 28 Neighborhood of EIF3S6 www.broad.mit.e...
Broad GNF2_FBL View Gene Set 7.289e-26 119 1.073e-24 29 Neighborhood of FBL www.broad.mit.e...
Broad MORF_PPP1CC View Gene Set 1.204e-24 150 1.713e-23 30 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_EIF3S6 View Gene Set 1.427e-24 108 1.965e-23 31 Neighborhood of EIF3S6 www.broad.mit.e...
Broad MORF_HAT1 View Gene Set 3.379e-24 155 4.509e-23 32 Neighborhood of HAT1 www.broad.mit.e...
Broad GCM_NPM1 View Gene Set 9.667e-24 108 1.251e-22 33 Neighborhood of NPM1 www.broad.mit.e...
Broad MORF_CCNI View Gene Set 2.443e-23 76 3.068e-22 34 Neighborhood of CCNI www.broad.mit.e...
Broad MORF_SKP1A View Gene Set 4.189e-23 175 5.11e-22 35 Neighborhood of SKP1A www.broad.mit.e...
Broad MORF_AATF View Gene Set 7.006e-23 179 8.309e-22 36 Neighborhood of AATF www.broad.mit.e...
Broad GNF2_PA2G4 View Gene Set 2.546e-22 73 2.938e-21 37 Neighborhood of PA2G4 www.broad.mit.e...
Broad MORF_EI24 View Gene Set 2.938e-22 136 3.301e-21 38 Neighborhood of EI24 www.broad.mit.e...
Broad GNF2_RAN View Gene Set 5.081e-22 78 5.563e-21 39 Neighborhood of RAN www.broad.mit.e...
Broad MORF_ERH View Gene Set 9.064e-22 103 9.676e-21 40 Neighborhood of ERH www.broad.mit.e...
Broad GCM_ACTG1 View Gene Set 1.228e-21 113 1.279e-20 41 Neighborhood of ACTG1 www.broad.mit.e...
Broad MORF_PRKAG1 View Gene Set 1.376e-21 202 1.399e-20 42 Neighborhood of PRKAG1 www.broad.mit.e...
Broad MORF_RFC4 View Gene Set 1.436e-21 137 1.426e-20 43 Neighborhood of RFC4 www.broad.mit.e...
Broad MORF_PCNA View Gene Set 2.401e-21 71 2.33e-20 44 Neighborhood of PCNA www.broad.mit.e...
Broad MORF_AP3D1 View Gene Set 8.597e-21 119 8.158e-20 45 Neighborhood of AP3D1 www.broad.mit.e...
Broad MORF_PSMC1 View Gene Set 1.051e-20 162 9.754e-20 46 Neighborhood of PSMC1 www.broad.mit.e...
Broad GCM_TPT1 View Gene Set 1.578e-20 69 1.434e-19 47 Neighborhood of TPT1 www.broad.mit.e...
Broad GNF2_DAP3 View Gene Set 2.281e-20 98 2.029e-19 48 Neighborhood of DAP3 www.broad.mit.e...
Broad GCM_CSNK2B View Gene Set 3.697e-20 88 3.222e-19 49 Neighborhood of CSNK2B www.broad.mit.e...
Broad MORF_PPP1CA View Gene Set 9.944e-20 145 8.492e-19 50 Neighborhood of PPP1CA www.broad.mit.e...
Broad GNF2_ST13 View Gene Set 2.339e-19 56 1.958e-18 51 Neighborhood of ST13 www.broad.mit.e...
Broad MORF_PRKAR1A View Gene Set 2.219e-18 133 1.822e-17 52 Neighborhood of PRKAR1A www.broad.mit.e...
Broad MORF_DNMT1 View Gene Set 2.415e-18 105 1.945e-17 53 Neighborhood of DNMT1 www.broad.mit.e...
Broad MORF_PAPSS1 View Gene Set 3.324e-18 98 2.628e-17 54 Neighborhood of PAPSS1 www.broad.mit.e...
Broad MORF_DDB1 View Gene Set 1.088e-17 220 8.446e-17 55 Neighborhood of DDB1 www.broad.mit.e...
Broad MORF_RAC1 View Gene Set 2.129e-17 196 1.623e-16 56 Neighborhood of RAC1 www.broad.mit.e...
Broad MORF_PPP2CA View Gene Set 2.648e-17 110 1.984e-16 57 Neighborhood of PPP2CA www.broad.mit.e...
Broad MORF_JUND View Gene Set 8.652e-17 63 6.37e-16 58 Neighborhood of JUND www.broad.mit.e...
Broad MORF_RAD23B View Gene Set 1.204e-16 159 8.717e-16 59 Neighborhood of RAD23B www.broad.mit.e...
Broad MORF_MAP2K2 View Gene Set 5.008e-16 123 3.564e-15 60 Neighborhood of MAP2K2 www.broad.mit.e...
Broad GCM_PSME1 View Gene Set 8.374e-16 76 5.862e-15 61 Neighborhood of PSME1 www.broad.mit.e...
Broad GCM_CBFB View Gene Set 1.693e-15 59 1.166e-14 62 Neighborhood of CBFB www.broad.mit.e...
Broad MORF_FEN1 View Gene Set 4.476e-15 58 3.034e-14 63 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_APEX1 View Gene Set 4.764e-14 72 3.179e-13 64 Neighborhood of APEX1 www.broad.mit.e...
Broad MORF_UNG View Gene Set 5.97e-14 65 3.922e-13 65 Neighborhood of UNG www.broad.mit.e...
Broad MORF_CDC10 View Gene Set 6.422e-14 120 4.155e-13 66 Neighborhood of CDC10 www.broad.mit.e...
Broad MORF_PTPN11 View Gene Set 1.509e-13 93 9.614e-13 67 Neighborhood of PTPN11 www.broad.mit.e...
Broad MORF_SART1 View Gene Set 2.523e-13 55 1.585e-12 68 Neighborhood of SART1 www.broad.mit.e...
Broad MORF_RPA2 View Gene Set 3.371e-13 170 2.086e-12 69 Neighborhood of RPA2 www.broad.mit.e...
Broad GCM_DDX5 View Gene Set 5.433e-13 52 3.314e-12 70 Neighborhood of DDX5 www.broad.mit.e...
Broad MORF_RRM1 View Gene Set 5.595e-13 90 3.365e-12 71 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_RAF1 View Gene Set 1.407e-12 94 8.23e-12 72 Neighborhood of RAF1 www.broad.mit.e...
Broad GNF2_NS View Gene Set 1.389e-12 35 8.23e-12 72 Neighborhood of NS www.broad.mit.e...
Broad GNF2_TPT1 View Gene Set 1.513e-12 38 8.732e-12 74 Neighborhood of TPT1 www.broad.mit.e...
Broad MORF_ESPL1 View Gene Set 2.012e-12 58 1.146e-11 75 Neighborhood of ESPL1 www.broad.mit.e...
Broad GNF2_RRM1 View Gene Set 2.402e-12 82 1.35e-11 76 Neighborhood of RRM1 www.broad.mit.e...
Broad MORF_RAB1A View Gene Set 2.558e-12 179 1.419e-11 77 Neighborhood of RAB1A www.broad.mit.e...
Broad MORF_MTA1 View Gene Set 2.751e-12 95 1.506e-11 78 Neighborhood of MTA1 www.broad.mit.e...
Broad GNF2_NPM1 View Gene Set 2.888e-12 57 1.561e-11 79 Neighborhood of NPM1 www.broad.mit.e...
Broad GCM_PPP1CC View Gene Set 5.185e-12 47 2.768e-11 80 Neighborhood of PPP1CC www.broad.mit.e...
Broad MORF_SP3 View Gene Set 7.113e-12 69 3.75e-11 81 Neighborhood of SP3 www.broad.mit.e...
Broad MORF_PRDX3 View Gene Set 1.296e-11 79 6.75e-11 82 Neighborhood of PRDX3 www.broad.mit.e...
Broad MORF_SNRP70 View Gene Set 1.77e-11 50 9.105e-11 83 Neighborhood of SNRP70 www.broad.mit.e...
Broad GNF2_SMC4L1 View Gene Set 3.648e-11 75 1.855e-10 84 Neighborhood of SMC4L1 www.broad.mit.e...
Broad GCM_RAF1 View Gene Set 4.212e-11 34 2.116e-10 85 Neighborhood of RAF1 www.broad.mit.e...
Broad MORF_BUB1 View Gene Set 4.422e-11 49 2.196e-10 86 Neighborhood of BUB1 www.broad.mit.e...
Broad MORF_CDK2 View Gene Set 4.56e-11 63 2.238e-10 87 Neighborhood of CDK2 www.broad.mit.e...
Broad MORF_RAD54L View Gene Set 5.907e-11 94 2.866e-10 88 Neighborhood of RAD54L www.broad.mit.e...
Broad MORF_DEAF1 View Gene Set 6.173e-11 54 2.962e-10 89 Neighborhood of DEAF1 www.broad.mit.e...
Broad MORF_UBE2N View Gene Set 6.391e-11 79 3.032e-10 90 Neighborhood of UBE2N www.broad.mit.e...
Broad GNF2_HDAC1 View Gene Set 7.929e-11 85 3.72e-10 91 Neighborhood of HDAC1 www.broad.mit.e...
Broad MORF_SMC1L1 View Gene Set 9.095e-11 47 4.221e-10 92 Neighborhood of SMC1L1 www.broad.mit.e...
Broad GNF2_MCM5 View Gene Set 1.233e-10 51 5.663e-10 93 Neighborhood of MCM5 www.broad.mit.e...
Broad GNF2_HAT1 View Gene Set 1.566e-10 45 7.115e-10 94 Neighborhood of HAT1 www.broad.mit.e...
Broad MORF_CUL1 View Gene Set 1.984e-10 62 8.919e-10 95 Neighborhood of CUL1 www.broad.mit.e...
Broad GNF2_XRCC5 View Gene Set 2.273e-10 61 1.011e-09 96 Neighborhood of XRCC5 www.broad.mit.e...
Broad GCM_PFN1 View Gene Set 3.811e-10 47 1.677e-09 97 Neighborhood of PFN1 www.broad.mit.e...
Broad MORF_TERF1 View Gene Set 4.336e-10 57 1.889e-09 98 Neighborhood of TERF1 www.broad.mit.e...
Broad MORF_ATOX1 View Gene Set 6.066e-10 72 2.616e-09 99 Neighborhood of ATOX1 www.broad.mit.e...
Broad GNF2_CDC20 View Gene Set 9.832e-10 52 4.198e-09 100 Neighborhood of CDC20 www.broad.mit.e...
Broad MORF_MSH2 View Gene Set 1.456e-09 52 6.154e-09 101 Neighborhood of MSH2 www.broad.mit.e...
Broad MORF_CDC16 View Gene Set 2.062e-09 67 8.632e-09 102 Neighborhood of CDC16 www.broad.mit.e...
Broad MORF_GMPS View Gene Set 2.208e-09 48 9.153e-09 103 Neighborhood of GMPS www.broad.mit.e...
Broad MORF_GSPT1 View Gene Set 2.338e-09 41 9.6e-09 104 Neighborhood of GSPT1 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 4.172e-09 53 1.697e-08 105 Neighborhood of CCNB2 www.broad.mit.e...
Broad MORF_PSMC2 View Gene Set 7.86e-09 100 3.166e-08 106 Neighborhood of PSMC2 www.broad.mit.e...
Broad GNF2_FEN1 View Gene Set 9.297e-09 49 3.71e-08 107 Neighborhood of FEN1 www.broad.mit.e...
Broad GNF2_PCNA View Gene Set 1.008e-08 62 3.986e-08 108 Neighborhood of PCNA www.broad.mit.e...
Broad GNF2_CENPF View Gene Set 1.686e-08 56 6.547e-08 109 Neighborhood of CENPF www.broad.mit.e...
Broad GNF2_CCNA2 View Gene Set 1.68e-08 62 6.547e-08 109 Neighborhood of CCNA2 www.broad.mit.e...
Broad GCM_ANP32B View Gene Set 2.891e-08 32 1.112e-07 111 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_RBBP6 View Gene Set 3.476e-08 54 1.325e-07 112 Neighborhood of RBBP6 www.broad.mit.e...
Broad GNF2_RFC3 View Gene Set 3.595e-08 38 1.358e-07 113 Neighborhood of RFC3 www.broad.mit.e...
Broad GCM_NF2 View Gene Set 4.343e-08 235 1.612e-07 114 Neighborhood of NF2 www.broad.mit.e...
Broad GNF2_RRM2 View Gene Set 4.337e-08 36 1.612e-07 114 Neighborhood of RRM2 www.broad.mit.e...
Broad GNF2_BUB1B View Gene Set 5.424e-08 46 1.997e-07 116 Neighborhood of BUB1B www.broad.mit.e...
Broad GCM_RAD21 View Gene Set 5.854e-08 30 2.136e-07 117 Neighborhood of RAD21 www.broad.mit.e...
Broad GNF2_ESPL1 View Gene Set 5.936e-08 35 2.148e-07 118 Neighborhood of ESPL1 www.broad.mit.e...
Broad MORF_DAP View Gene Set 6.029e-08 72 2.163e-07 119 Neighborhood of DAP www.broad.mit.e...
Broad GNF2_RFC4 View Gene Set 7.835e-08 57 2.788e-07 120 Neighborhood of RFC4 www.broad.mit.e...
Broad GCM_HDAC1 View Gene Set 8.111e-08 30 2.862e-07 121 Neighborhood of HDAC1 www.broad.mit.e...
Broad GNF2_UBE2I View Gene Set 8.346e-08 33 2.921e-07 122 Neighborhood of UBE2I www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 1.203e-07 45 4.177e-07 123 Neighborhood of CKS2 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 1.247e-07 43 4.293e-07 124 Neighborhood of HMMR www.broad.mit.e...
Broad MORF_RAB6A View Gene Set 1.347e-07 63 4.602e-07 125 Neighborhood of RAB6A www.broad.mit.e...
Broad MORF_PHB View Gene Set 1.695e-07 112 5.743e-07 126 Neighborhood of PHB www.broad.mit.e...
Broad GNF2_MSH6 View Gene Set 1.736e-07 30 5.836e-07 127 Neighborhood of MSH6 www.broad.mit.e...
Broad MORF_RPA1 View Gene Set 2.248e-07 55 7.498e-07 128 Neighborhood of RPA1 www.broad.mit.e...
Broad GNF2_MLH1 View Gene Set 2.791e-07 36 9.238e-07 129 Neighborhood of MLH1 www.broad.mit.e...
Broad GCM_GSPT1 View Gene Set 3.085e-07 129 1.013e-06 130 Neighborhood of GSPT1 www.broad.mit.e...
Broad GNF2_DEK View Gene Set 5.504e-07 45 1.794e-06 131 Neighborhood of DEK www.broad.mit.e...
Broad GNF2_CKS1B View Gene Set 6.826e-07 36 2.208e-06 132 Neighborhood of CKS1B www.broad.mit.e...
Broad GNF2_CDC2 View Gene Set 7.587e-07 56 2.436e-06 133 Neighborhood of CDC2 www.broad.mit.e...
Broad MORF_TERF2IP View Gene Set 7.779e-07 99 2.479e-06 134 Neighborhood of TERF2IP www.broad.mit.e...
Broad MORF_BECN1 View Gene Set 8.444e-07 93 2.671e-06 135 Neighborhood of BECN1 www.broad.mit.e...
Broad MORF_BUB1B View Gene Set 8.901e-07 61 2.776e-06 136 Neighborhood of BUB1B www.broad.mit.e...
Broad GNF2_DENR View Gene Set 8.908e-07 39 2.776e-06 136 Neighborhood of DENR www.broad.mit.e...
Broad GNF2_MCM4 View Gene Set 9.397e-07 50 2.908e-06 138 Neighborhood of MCM4 www.broad.mit.e...
Broad MORF_PPP6C View Gene Set 9.66e-07 88 2.961e-06 139 Neighborhood of PPP6C www.broad.mit.e...
Broad GNF2_GLTSCR2 View Gene Set 9.707e-07 31 2.961e-06 139 Neighborhood of GLTSCR2 www.broad.mit.e...
Broad GNF2_H2AFX View Gene Set 9.79e-07 28 2.965e-06 141 Neighborhood of H2AFX www.broad.mit.e...
Broad MORF_PPP2R4 View Gene Set 1.041e-06 44 3.13e-06 142 Neighborhood of PPP2R4 www.broad.mit.e...
Broad GNF2_CENPE View Gene Set 1.448e-06 37 4.322e-06 143 Neighborhood of CENPE www.broad.mit.e...
Broad GNF2_STAT6 View Gene Set 1.849e-06 75 5.483e-06 144 Neighborhood of STAT6 www.broad.mit.e...
Broad GCM_MSN View Gene Set 2.283e-06 24 6.724e-06 145 Neighborhood of MSN www.broad.mit.e...
Broad MORF_XPC View Gene Set 2.682e-06 55 7.845e-06 146 Neighborhood of XPC www.broad.mit.e...
Broad GCM_GSTA4 View Gene Set 3.34e-06 57 9.702e-06 147 Neighborhood of GSTA4 www.broad.mit.e...
Broad MORF_BMI1 View Gene Set 3.991e-06 71 1.151e-05 148 Neighborhood of BMI1 www.broad.mit.e...
Broad GCM_RAN View Gene Set 4.15e-06 160 1.189e-05 149 Neighborhood of RAN www.broad.mit.e...
Broad MORF_USP5 View Gene Set 4.848e-06 46 1.38e-05 150 Neighborhood of USP5 www.broad.mit.e...
Broad GNF2_BUB3 View Gene Set 6.191e-06 22 1.751e-05 151 Neighborhood of BUB3 www.broad.mit.e...
Broad GCM_BECN1 View Gene Set 6.778e-06 59 1.904e-05 152 Neighborhood of BECN1 www.broad.mit.e...
Broad GCM_CALM1 View Gene Set 9.36e-06 91 2.612e-05 153 Neighborhood of CALM1 www.broad.mit.e...
Broad GCM_DENR View Gene Set 1.026e-05 40 2.844e-05 154 Neighborhood of DENR www.broad.mit.e...
Broad GNF2_G22P1 View Gene Set 1.469e-05 29 4.047e-05 155 Neighborhood of G22P1 www.broad.mit.e...
Broad MORF_MBD4 View Gene Set 1.801e-05 76 4.929e-05 156 Neighborhood of MBD4 www.broad.mit.e...
Broad GNF2_MKI67 View Gene Set 1.913e-05 26 5.204e-05 157 Neighborhood of MKI67 www.broad.mit.e...
Broad GNF2_TTK View Gene Set 3.397e-05 34 9.181e-05 158 Neighborhood of TTK www.broad.mit.e...
Broad GCM_CSNK1A1 View Gene Set 4.79e-05 28 0.0001286 159 Neighborhood of CSNK1A1 www.broad.mit.e...
Broad GNF2_CBFB View Gene Set 5.033e-05 26 0.0001343 160 Neighborhood of CBFB www.broad.mit.e...
Broad GCM_SMARCC1 View Gene Set 5.452e-05 33 0.0001442 161 Neighborhood of SMARCC1 www.broad.mit.e...
Broad GNF2_MBD4 View Gene Set 5.47e-05 21 0.0001442 161 Neighborhood of MBD4 www.broad.mit.e...
Broad GCM_CHUK View Gene Set 6.346e-05 61 0.0001652 163 Neighborhood of CHUK www.broad.mit.e...
Broad GNF2_MSH2 View Gene Set 6.337e-05 26 0.0001652 163 Neighborhood of MSH2 www.broad.mit.e...
Broad GNF2_ANP32B View Gene Set 6.578e-05 29 0.0001702 165 Neighborhood of ANP32B www.broad.mit.e...
Broad GNF2_BNIP2 View Gene Set 7.44e-05 31 0.0001914 166 Neighborhood of BNIP2 www.broad.mit.e...
Broad MORF_GPX4 View Gene Set 0.0001187 49 0.0003034 167 Neighborhood of GPX4 www.broad.mit.e...
Broad MORF_BAG5 View Gene Set 0.0001206 48 0.0003065 168 Neighborhood of BAG5 www.broad.mit.e...
Broad MORF_UBE2A View Gene Set 0.0001266 44 0.0003198 169 Neighborhood of UBE2A www.broad.mit.e...
Broad GNF2_BUB1 View Gene Set 0.0001496 25 0.0003759 170 Neighborhood of BUB1 www.broad.mit.e...
Broad GCM_RBM8A View Gene Set 0.0001582 64 0.0003951 171 Neighborhood of RBM8A www.broad.mit.e...
Broad GCM_BCL2L1 View Gene Set 0.0001627 25 0.000404 172 Neighborhood of BCL2L1 www.broad.mit.e...
Broad GCM_NUMA1 View Gene Set 0.0001945 45 0.00048 173 Neighborhood of NUMA1 www.broad.mit.e...
Broad GCM_UBE2N View Gene Set 0.000221 125 0.0005423 174 Neighborhood of UBE2N www.broad.mit.e...
Broad GNF2_TDG View Gene Set 0.0004031 23 0.0009835 175 Neighborhood of TDG www.broad.mit.e...
Broad GCM_DFFA View Gene Set 0.0004911 100 0.001191 176 Neighborhood of DFFA www.broad.mit.e...
Broad GCM_RAB10 View Gene Set 0.0005638 143 0.00136 177 Neighborhood of RAB10 www.broad.mit.e...
Broad MORF_RFC1 View Gene Set 0.0005923 98 0.001421 178 Neighborhood of RFC1 www.broad.mit.e...
Broad GNF2_SMC2L1 View Gene Set 0.0006689 30 0.001596 179 Neighborhood of SMC2L1 www.broad.mit.e...
Broad GCM_AIP View Gene Set 0.0007724 36 0.001832 180 Neighborhood of AIP www.broad.mit.e...
Broad MORF_EIF4E View Gene Set 0.0007959 76 0.001878 181 Neighborhood of EIF4E www.broad.mit.e...
Broad MORF_SS18 View Gene Set 0.0008155 55 0.001913 182 Neighborhood of SS18 www.broad.mit.e...
Broad MORF_RAB5A View Gene Set 0.0008684 83 0.002026 183 Neighborhood of RAB5A www.broad.mit.e...
Broad GCM_BMPR2 View Gene Set 0.00109 68 0.002529 184 Neighborhood of BMPR2 www.broad.mit.e...
Broad GCM_NCAM1 View Gene Set 0.001514 111 0.003495 185 Neighborhood of NCAM1 www.broad.mit.e...
Broad GNF2_TYK2 View Gene Set 0.0018 31 0.004132 186 Neighborhood of TYK2 www.broad.mit.e...
Broad GCM_HBP1 View Gene Set 0.001851 54 0.004205 187 Neighborhood of HBP1 www.broad.mit.e...
Broad GCM_MAP4K4 View Gene Set 0.001847 144 0.004205 187 Neighborhood of MAP4K4 www.broad.mit.e...
Broad GNF2_PPP6C View Gene Set 0.001994 33 0.004504 189 Neighborhood of PPP6C www.broad.mit.e...
Broad GCM_MYST2 View Gene Set 0.002095 138 0.004709 190 Neighborhood of MYST2 www.broad.mit.e...
Broad MORF_TPR View Gene Set 0.002277 131 0.005091 191 Neighborhood of TPR www.broad.mit.e...
Broad GCM_ERBB2IP View Gene Set 0.003617 57 0.008002 192 Neighborhood of ERBB2IP www.broad.mit.e...
Broad GNF2_DDX5 View Gene Set 0.003614 54 0.008002 192 Neighborhood of DDX5 www.broad.mit.e...
Broad GCM_PTK2 View Gene Set 0.00416 126 0.00911 194 Neighborhood of PTK2 www.broad.mit.e...
Broad GNF2_PTPRC View Gene Set 0.004155 60 0.00911 194 Neighborhood of PTPRC www.broad.mit.e...
Broad GNF2_KPNB1 View Gene Set 0.005095 52 0.0111 196 Neighborhood of KPNB1 www.broad.mit.e...
Broad GCM_IL6ST View Gene Set 0.005354 48 0.01161 197 Neighborhood of IL6ST www.broad.mit.e...
Broad GCM_DLG1 View Gene Set 0.006466 63 0.01394 198 Neighborhood of DLG1 www.broad.mit.e...
Broad GNF2_RPA1 View Gene Set 0.007232 20 0.01552 199 Neighborhood of RPA1 www.broad.mit.e...
Broad GCM_MAP1B View Gene Set 0.007475 55 0.01596 200 Neighborhood of MAP1B www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_83 View Gene Set 8.971e-44 296 4.073e-41 1 Genes in module_83 www.broad.mit.e...
Broad module_114 View Gene Set 2.363e-41 314 5.364e-39 2 Genes in module_114 www.broad.mit.e...
Broad module_151 View Gene Set 3.558e-39 297 5.384e-37 3 Genes in module_151 www.broad.mit.e...
Broad module_32 View Gene Set 2.618e-35 227 2.972e-33 4 Genes in module_32 www.broad.mit.e...
Broad module_8 View Gene Set 5.321e-27 403 4.831e-25 5 Genes in module_8 www.broad.mit.e...
Broad module_3 View Gene Set 5.198e-24 374 3.933e-22 6 Genes in module_3 www.broad.mit.e...
Broad module_17 View Gene Set 1.722e-23 351 1.117e-21 7 Genes in module_17 www.broad.mit.e...
Broad module_18 View Gene Set 1.248e-20 434 7.082e-19 8 Genes in module_18 www.broad.mit.e...
Broad module_52 View Gene Set 5.899e-18 415 2.976e-16 9 Genes in module_52 www.broad.mit.e...
Broad module_198 View Gene Set 5.995e-17 288 2.722e-15 10 Genes in module_198 www.broad.mit.e...
Broad module_126 View Gene Set 2.579e-15 173 1.065e-13 11 Genes in module_126 www.broad.mit.e...
Broad module_98 View Gene Set 3.206e-15 375 1.213e-13 12 Genes in module_98 www.broad.mit.e...
Broad module_252 View Gene Set 1.381e-14 224 4.823e-13 13 Genes in module_252 www.broad.mit.e...
Broad module_149 View Gene Set 1.166e-12 36 3.781e-11 14 Genes in module_149 www.broad.mit.e...
Broad module_115 View Gene Set 1.712e-10 27 5.181e-09 15 Genes in module_115 www.broad.mit.e...
Broad module_16 View Gene Set 2.123e-10 495 6.025e-09 16 Genes in module_16 www.broad.mit.e...
Broad module_15 View Gene Set 2.486e-10 347 6.639e-09 17 Genes in module_15 www.broad.mit.e...
Broad module_212 View Gene Set 3.479e-10 316 8.776e-09 18 Genes in module_212 www.broad.mit.e...
Broad module_183 View Gene Set 4.424e-10 52 1.057e-08 19 Genes in module_183 www.broad.mit.e...
Broad module_159 View Gene Set 5.004e-10 81 1.136e-08 20 Genes in module_159 www.broad.mit.e...
Broad module_61 View Gene Set 1.103e-09 50 2.384e-08 21 Genes in module_61 www.broad.mit.e...
Broad module_54 View Gene Set 1.519e-09 242 3.135e-08 22 Genes in module_54 www.broad.mit.e...
Broad module_72 View Gene Set 1.378e-08 293 2.719e-07 23 Genes in module_72 www.broad.mit.e...
Broad module_219 View Gene Set 1.704e-08 26 3.224e-07 24 Genes in module_219 www.broad.mit.e...
Broad module_245 View Gene Set 1.806e-08 26 3.279e-07 25 Genes in module_245 www.broad.mit.e...
Broad module_155 View Gene Set 5.293e-08 25 9.242e-07 26 Genes in module_155 www.broad.mit.e...
Broad module_81 View Gene Set 6.532e-08 20 1.098e-06 27 Genes in module_81 www.broad.mit.e...
Broad module_403 View Gene Set 9.434e-08 44 1.53e-06 28 Genes in module_403 www.broad.mit.e...
Broad module_152 View Gene Set 1.48e-07 121 2.29e-06 29 Genes in module_152 www.broad.mit.e...
Broad module_239 View Gene Set 1.513e-07 112 2.29e-06 29 Genes in module_239 www.broad.mit.e...
Broad module_177 View Gene Set 3.663e-07 101 5.365e-06 31 Genes in module_177 www.broad.mit.e...
Broad module_105 View Gene Set 3.872e-07 192 5.494e-06 32 Genes in module_105 www.broad.mit.e...
Broad module_118 View Gene Set 5.19e-07 393 7.141e-06 33 Genes in module_118 www.broad.mit.e...
Broad module_29 View Gene Set 6.402e-07 28 8.549e-06 34 Genes in module_29 www.broad.mit.e...
Broad module_124 View Gene Set 7.368e-07 92 9.558e-06 35 Genes in module_124 www.broad.mit.e...
Broad module_91 View Gene Set 1.381e-06 37 1.742e-05 36 Genes in module_91 www.broad.mit.e...
Broad module_53 View Gene Set 1.473e-06 389 1.807e-05 37 Genes in module_53 www.broad.mit.e...
Broad module_299 View Gene Set 1.595e-06 33 1.905e-05 38 Genes in module_299 www.broad.mit.e...
Broad module_133 View Gene Set 2.766e-06 15 3.22e-05 39 Genes in module_133 www.broad.mit.e...
Broad module_278 View Gene Set 3.602e-06 34 4.089e-05 40 Genes in module_278 www.broad.mit.e...
Broad module_257 View Gene Set 8.352e-06 137 9.248e-05 41 Genes in module_257 www.broad.mit.e...
Broad module_28 View Gene Set 9.043e-06 32 9.775e-05 42 Genes in module_28 www.broad.mit.e...
Broad module_102 View Gene Set 1.887e-05 18 0.0001947 43 Genes in module_102 www.broad.mit.e...
Broad module_197 View Gene Set 1.844e-05 170 0.0001947 43 Genes in module_197 www.broad.mit.e...
Broad module_457 View Gene Set 2.024e-05 9 0.0002042 45 Genes in module_457 www.broad.mit.e...
Broad module_62 View Gene Set 2.879e-05 88 0.0002842 46 Genes in module_62 www.broad.mit.e...
Broad module_337 View Gene Set 2.978e-05 59 0.0002876 47 Genes in module_337 www.broad.mit.e...
Broad module_180 View Gene Set 3.281e-05 113 0.0003103 48 Genes in module_180 www.broad.mit.e...
Broad module_57 View Gene Set 3.68e-05 54 0.0003409 49 Genes in module_57 www.broad.mit.e...
Broad module_160 View Gene Set 5.413e-05 15 0.0004915 50 Genes in module_160 www.broad.mit.e...
Broad module_363 View Gene Set 8.057e-05 48 0.0007173 51 Genes in module_363 www.broad.mit.e...
Broad module_392 View Gene Set 0.000116 18 0.001013 52 Genes in module_392 www.broad.mit.e...
Broad module_93 View Gene Set 0.0001389 180 0.00119 53 Genes in module_93 www.broad.mit.e...
Broad module_451 View Gene Set 0.0001453 29 0.001221 54 Genes in module_451 www.broad.mit.e...
Broad module_147 View Gene Set 0.0001576 102 0.001255 55 Genes in module_147 www.broad.mit.e...
Broad module_244 View Gene Set 0.0001535 182 0.001255 55 Genes in module_244 www.broad.mit.e...
Broad module_519 View Gene Set 0.0001561 15 0.001255 55 Genes in module_519 www.broad.mit.e...
Broad module_503 View Gene Set 0.0002208 106 0.001728 58 Genes in module_503 www.broad.mit.e...
Broad module_233 View Gene Set 0.0002291 22 0.001746 59 Genes in module_233 www.broad.mit.e...
Broad module_576 View Gene Set 0.0002308 104 0.001746 59 Genes in module_576 www.broad.mit.e...
Broad module_429 View Gene Set 0.0002618 14 0.001948 61 Genes in module_429 www.broad.mit.e...
Broad module_139 View Gene Set 0.0002837 74 0.002078 62 Genes in module_139 www.broad.mit.e...
Broad module_243 View Gene Set 0.0003963 73 0.002843 63 Genes in module_243 www.broad.mit.e...
Broad module_355 View Gene Set 0.0004008 28 0.002843 63 Genes in module_355 www.broad.mit.e...
Broad module_56 View Gene Set 0.0005022 12 0.003507 65 Genes in module_56 www.broad.mit.e...
Broad module_22 View Gene Set 0.0005666 45 0.003898 66 Genes in module_22 www.broad.mit.e...
Broad module_306 View Gene Set 0.0005861 26 0.003971 67 Genes in module_306 www.broad.mit.e...
Broad module_321 View Gene Set 0.0006672 107 0.004455 68 Genes in module_321 www.broad.mit.e...
Broad module_195 View Gene Set 0.0008861 138 0.00583 69 Genes in module_195 www.broad.mit.e...
Broad module_235 View Gene Set 0.000915 81 0.005934 70 Genes in module_235 www.broad.mit.e...
Broad module_150 View Gene Set 0.001044 15 0.006676 71 Genes in module_150 www.broad.mit.e...
Broad module_21 View Gene Set 0.001104 10 0.006959 72 Genes in module_21 www.broad.mit.e...
Broad module_82 View Gene Set 0.001238 24 0.007596 73 Genes in module_82 www.broad.mit.e...
Broad module_110 View Gene Set 0.001235 15 0.007596 73 Genes in module_110 www.broad.mit.e...
Broad module_42 View Gene Set 0.001256 25 0.007601 75 Genes in module_42 www.broad.mit.e...
Broad module_277 View Gene Set 0.00136 48 0.008125 76 Genes in module_277 www.broad.mit.e...
Broad module_4 View Gene Set 0.001589 21 0.009369 77 Genes in module_4 www.broad.mit.e...
Broad module_35 View Gene Set 0.001648 16 0.009593 78 Genes in module_35 www.broad.mit.e...
Broad module_567 View Gene Set 0.001711 90 0.009831 79 Genes in module_567 www.broad.mit.e...
Broad module_77 View Gene Set 0.00182 28 0.01024 80 Genes in module_77 www.broad.mit.e...
Broad module_439 View Gene Set 0.001828 20 0.01024 80 Genes in module_439 www.broad.mit.e...
Broad module_331 View Gene Set 0.001926 65 0.01066 82 Genes in module_331 www.broad.mit.e...
Broad module_352 View Gene Set 0.002191 17 0.01199 83 Genes in module_352 www.broad.mit.e...
Broad module_206 View Gene Set 0.00226 139 0.01218 84 Genes in module_206 www.broad.mit.e...
Broad module_356 View Gene Set 0.002281 141 0.01218 84 Genes in module_356 www.broad.mit.e...
Broad module_484 View Gene Set 0.002343 39 0.01237 86 Genes in module_484 www.broad.mit.e...
Broad module_524 View Gene Set 0.002436 30 0.01271 87 Genes in module_524 www.broad.mit.e...
Broad module_447 View Gene Set 0.00261 35 0.01346 88 Genes in module_447 www.broad.mit.e...
Broad module_485 View Gene Set 0.002649 44 0.01351 89 Genes in module_485 www.broad.mit.e...
Broad module_31 View Gene Set 0.003133 7 0.0158 90 Genes in module_31 www.broad.mit.e...
Broad module_323 View Gene Set 0.003431 54 0.01697 91 Genes in module_323 www.broad.mit.e...
Broad module_397 View Gene Set 0.003439 114 0.01697 91 Genes in module_397 www.broad.mit.e...
Broad module_40 View Gene Set 0.004308 81 0.02103 93 Genes in module_40 www.broad.mit.e...
Broad module_25 View Gene Set 0.0045 13 0.02174 94 Genes in module_25 www.broad.mit.e...
Broad module_273 View Gene Set 0.005266 50 0.02517 95 Genes in module_273 www.broad.mit.e...
Broad module_552 View Gene Set 0.005532 18 0.02616 96 Genes in module_552 www.broad.mit.e...
Broad module_2 View Gene Set 0.005933 373 0.02777 97 Genes in module_2 www.broad.mit.e...
Broad module_19 View Gene Set 0.006093 306 0.02823 98 Genes in module_19 www.broad.mit.e...
Broad module_50 View Gene Set 0.007099 13 0.03256 99 Genes in module_50 www.broad.mit.e...
Broad module_349 View Gene Set 0.00743 17 0.03373 100 Genes in module_349 www.broad.mit.e...
Broad module_312 View Gene Set 0.007807 45 0.03509 101 Genes in module_312 www.broad.mit.e...
Broad module_350 View Gene Set 0.009573 57 0.04226 102 Genes in module_350 www.broad.mit.e...
Broad module_486 View Gene Set 0.009587 88 0.04226 102 Genes in module_486 www.broad.mit.e...
Broad module_254 View Gene Set 0.01066 58 0.04652 104 Genes in module_254 www.broad.mit.e...
Broad module_38 View Gene Set 0.01144 453 0.04946 105 Genes in module_38 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 7.905e-13 1197 6.522e-10 1 Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad INTRACELLULAR_TRANSPORT View Gene Set 1.665e-09 271 5.387e-07 2 Genes annotated by the GO term GO:0046907. The directed movement of substances within a cell. www.broad.mit.e...
Broad TRANSLATION View Gene Set 1.959e-09 177 5.387e-07 2 Genes annotated by the GO term GO:0006412. The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS View Gene Set 3.238e-09 1623 6.678e-07 4 Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS View Gene Set 1.496e-08 458 2.08e-06 5 Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell. www.broad.mit.e...
Broad CELLULAR_BIOSYNTHETIC_PROCESS View Gene Set 1.513e-08 311 2.08e-06 5 Genes annotated by the GO term GO:0044249. The chemical reactions and pathways resulting in the formation of substances carried out by individual cells. www.broad.mit.e...
Broad RNA_PROCESSING View Gene Set 2.352e-08 147 2.772e-06 7 Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. www.broad.mit.e...
Broad BIOSYNTHETIC_PROCESS View Gene Set 3.452e-08 459 2.848e-06 8 Genes annotated by the GO term GO:0009058. The energy-requiring part of metabolism in which simpler substances are transformed into more complex ones as in growth and other biosynthetic processes. www.broad.mit.e...
Broad ESTABLISHMENT_OF_CELLULAR_LOCALIZATION View Gene Set 3.08e-08 342 2.848e-06 8 Genes annotated by the GO term GO:0051649. The directed movement of a substance or cellular entity such as a protein complex or organelle to a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad PROTEIN_METABOLIC_PROCESS View Gene Set 3.409e-08 1198 2.848e-06 8 Genes annotated by the GO term GO:0019538. The chemical reactions and pathways involving a specific protein rather than of proteins in general. Includes protein modification. www.broad.mit.e...
Broad CELLULAR_PROTEIN_METABOLIC_PROCESS View Gene Set 6.542e-08 1085 4.907e-06 11 Genes annotated by the GO term GO:0044267. The chemical reactions and pathways involving a specific protein rather than of proteins in general occurring at the level of an individual cell. Includes protein modification. www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS View Gene Set 9.447e-08 801 5.567e-06 12 Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. www.broad.mit.e...
Broad CELLULAR_LOCALIZATION View Gene Set 8.802e-08 360 5.567e-06 12 Genes annotated by the GO term GO:0051641. The processes by which a substance or cellular entity such as a protein complex or organelle is transported to and/or maintained in a specific location within or in the membrane of a cell. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_METABOLIC_PROCESS View Gene Set 9.251e-08 1099 5.567e-06 12 Genes annotated by the GO term GO:0044260. The chemical reactions and pathways involving macromolecules large molecules including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad MACROMOLECULE_BIOSYNTHETIC_PROCESS View Gene Set 2.167e-07 313 1.192e-05 15 Genes annotated by the GO term GO:0009059. The chemical reactions and pathways resulting in the formation of macromolecules large molecules including proteins nucleic acids and carbohydrates. www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY View Gene Set 1.25e-06 59 6.444e-05 16 Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY View Gene Set 1.861e-06 74 9.03e-05 17 Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together. www.broad.mit.e...
Broad MACROMOLECULE_LOCALIZATION View Gene Set 5.915e-06 228 0.0002568 18 Genes annotated by the GO term GO:0033036. The processes by which a macromolecule is transported to or maintained in a specific location. www.broad.mit.e...
Broad PROTEIN_TRANSPORT View Gene Set 5.604e-06 150 0.0002568 18 Genes annotated by the GO term GO:0015031. The directed movement of proteins into out of within or between cells. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY View Gene Set 9.183e-06 271 0.0003788 20 Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex. www.broad.mit.e...
Broad INTRACELLULAR_PROTEIN_TRANSPORT View Gene Set 1.161e-05 138 0.0004559 21 Genes annotated by the GO term GO:0006886. The directed movement of proteins in a cell including the movement of proteins between specific compartments or structures within a cell such as organelles of a eukaryotic cell. www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS View Gene Set 1.614e-05 779 0.0006052 22 Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS View Gene Set 1.933e-05 767 0.0006935 23 Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. www.broad.mit.e...
Broad PROTEIN_LOCALIZATION View Gene Set 2.553e-05 207 0.0008775 24 Genes annotated by the GO term GO:0008104. The processes by which a protein is transported to or maintained in a specific location. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION View Gene Set 2.856e-05 660 0.0009146 25 Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY View Gene Set 2.882e-05 288 0.0009146 25 Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell. www.broad.mit.e...
Broad PROTEIN_TARGETING View Gene Set 5.623e-05 103 0.001718 27 Genes annotated by the GO term GO:0006605. The process of targeting specific proteins to particular membrane-bound subcellular organelles. Usually requires an organelle specific protein sequence motif. www.broad.mit.e...
Broad TRANSLATIONAL_INITIATION View Gene Set 6.527e-05 39 0.001795 28 Genes annotated by the GO term GO:0006413. The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome mRNA and an initiation complex that contains the first aminoacyl-tRNA. www.broad.mit.e...
Broad MITOCHONDRION_ORGANIZATION_AND_BIOGENESIS View Gene Set 6.285e-05 47 0.001795 28 Genes annotated by the GO term GO:0007005. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a mitochondrion; includes mitochondrial morphology and distribution and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. www.broad.mit.e...
Broad RNA_SPLICING View Gene Set 6.446e-05 73 0.001795 28 Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. www.broad.mit.e...
Broad ESTABLISHMENT_OF_PROTEIN_LOCALIZATION View Gene Set 8.705e-05 183 0.002179 31 Genes annotated by the GO term GO:0045184. The directed movement of a protein to a specific location. www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049 View Gene Set 8.257e-05 304 0.002179 31 Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. www.broad.mit.e...
Broad MITOCHONDRIAL_TRANSPORT View Gene Set 8.716e-05 20 0.002179 31 Genes annotated by the GO term GO:0006839. Transport of substances into out of or within a mitochondrion. www.broad.mit.e...
Broad CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001019 206 0.002473 34 Genes annotated by the GO term GO:0007010. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures. www.broad.mit.e...
Broad TRANSCRIPTION View Gene Set 0.0001049 738 0.002474 35 Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad NUCLEAR_TRANSPORT View Gene Set 0.0001714 84 0.003928 36 Genes annotated by the GO term GO:0051169. The directed movement of substances into out of or within the nucleus. www.broad.mit.e...
Broad PROGRAMMED_CELL_DEATH View Gene Set 0.0001799 424 0.004011 37 Genes annotated by the GO term GO:0012501. Cell death resulting from activation of endogenous cellular processes. www.broad.mit.e...
Broad APOPTOSIS_GO View Gene Set 0.000199 423 0.00432 38 Genes annotated by the GO term GO:0006915. A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface. www.broad.mit.e...
Broad CELL_CYCLE_ARREST_GO_0007050 View Gene Set 0.0002285 56 0.004833 39 Genes annotated by the GO term GO:0007050. Any process by which progression through the cell cycle is halted during one of the normal phases (G1 S G2 M). www.broad.mit.e...
Broad COENZYME_METABOLIC_PROCESS View Gene Set 0.0002874 37 0.005854 40 Genes annotated by the GO term GO:0006732. The chemical reactions and pathways involving coenzymes any of various nonprotein organic cofactors that are required in addition to an enzyme and a substrate for an enzymatic reaction to proceed. www.broad.mit.e...
Broad NUCLEOCYTOPLASMIC_TRANSPORT View Gene Set 0.0002909 83 0.005854 40 Genes annotated by the GO term GO:0006913. The directed movement of molecules between the nucleus and the cytoplasm. www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE View Gene Set 0.0003394 148 0.006666 42 Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent. www.broad.mit.e...
Broad REGULATION_OF_TRANSLATIONAL_INITIATION View Gene Set 0.0003679 31 0.007059 43 Genes annotated by the GO term GO:0006446. Any process that modulates the frequency rate or extent of translational initiation. www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS View Gene Set 0.0004136 601 0.007756 44 Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids. www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS View Gene Set 0.0005812 253 0.01024 45 Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides. www.broad.mit.e...
Broad PROTEIN_FOLDING View Gene Set 0.000587 56 0.01024 45 Genes annotated by the GO term GO:0006457. The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. www.broad.mit.e...
Broad ACTIN_FILAMENT_BASED_PROCESS View Gene Set 0.0006079 115 0.01024 45 Genes annotated by the GO term GO:0030029. Any cellular process that depends upon or alters the actin cytoskeleton that part of the cytoskeleton comprising actin filaments and their associated proteins. www.broad.mit.e...
Broad PROTEIN_EXPORT_FROM_NUCLEUS View Gene Set 0.0006084 10 0.01024 45 Genes annotated by the GO term GO:0006611. The directed movement of a protein from the nucleus into the cytoplasm. www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 0.0005833 101 0.01024 45 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...
Broad ORGANIC_ACID_METABOLIC_PROCESS View Gene Set 0.0006474 175 0.01047 50 Genes annotated by the GO term GO:0006082. The chemical reactions and pathways involving organic acids any acidic compound containing carbon in covalent linkage. www.broad.mit.e...
Broad TRANSPORT View Gene Set 0.000644 777 0.01047 50 Genes annotated by the GO term GO:0006810. The directed movement of substances (such as macromolecules small molecules ions) into out of within or between cells. www.broad.mit.e...
Broad AROMATIC_COMPOUND_METABOLIC_PROCESS View Gene Set 0.0006882 26 0.01092 52 Genes annotated by the GO term GO:0006725. The chemical reactions and pathways involving aromatic compounds any organic compound characterized by one or more planar rings each of which contains conjugated double bonds and delocalized pi electrons. www.broad.mit.e...
Broad BIOPOLYMER_CATABOLIC_PROCESS View Gene Set 0.0007221 115 0.01103 53 Genes annotated by the GO term GO:0043285. The chemical reactions and pathways resulting in the breakdown of biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins. www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS View Gene Set 0.0007116 70 0.01103 53 Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes. www.broad.mit.e...
Broad CARBOXYLIC_ACID_METABOLIC_PROCESS View Gene Set 0.000866 173 0.01299 55 Genes annotated by the GO term GO:0019752. The chemical reactions and pathways involving carboxylic acids any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION View Gene Set 0.0009771 555 0.0144 56 Genes annotated by the GO term GO:0045449. Any process that modulates the frequency rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. www.broad.mit.e...
Broad CELL_DEVELOPMENT View Gene Set 0.001206 568 0.01745 57 Genes annotated by the GO term GO:0048468. The process whose specific outcome is the progression of the cell over time from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. www.broad.mit.e...
Broad VIRAL_GENOME_REPLICATION View Gene Set 0.001267 21 0.01745 57 Genes annotated by the GO term GO:0019079. Any process involved directly in viral genome replication including viral nucleotide metabolism. www.broad.mit.e...
Broad ESTABLISHMENT_OF_LOCALIZATION View Gene Set 0.00129 851 0.01745 57 Genes annotated by the GO term GO:0051234. The directed movement of a cell substance or cellular entity such as a protein complex or organelle to a specific location. www.broad.mit.e...
Broad COFACTOR_METABOLIC_PROCESS View Gene Set 0.001274 53 0.01745 57 Genes annotated by the GO term GO:0051186. The chemical reactions and pathways involving a cofactor a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic such as the metal atoms zinc iron and copper in certain forms or organic in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. www.broad.mit.e...
Broad NUCLEAR_EXPORT View Gene Set 0.001273 31 0.01745 57 Genes annotated by the GO term GO:0051168. The directed movement of substances out of the nucleus. www.broad.mit.e...
Broad ACTIN_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.001535 105 0.02042 62 Genes annotated by the GO term GO:0030036. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. www.broad.mit.e...
Broad VESICLE_MEDIATED_TRANSPORT View Gene Set 0.001576 188 0.02064 63 Genes annotated by the GO term GO:0016192. The directed movement of substances either within a vesicle or in the vesicle membrane into out of or within a cell. www.broad.mit.e...
Broad TRANSCRIPTION_DNA_DEPENDENT View Gene Set 0.001609 623 0.02073 64 Genes annotated by the GO term GO:0006351. The synthesis of RNA on a template of DNA. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_PROCESS View Gene Set 0.001709 629 0.02169 65 Genes annotated by the GO term GO:0048523. Any process that stops prevents or reduces the frequency rate or extent of cellular processes those that are carried out at the cellular level but are not necessarily restricted to a single cell. For example cell communication occurs among more than one cell but occurs at the cellular level. www.broad.mit.e...
Broad CELLULAR_MACROMOLECULE_CATABOLIC_PROCESS View Gene Set 0.001992 103 0.02489 66 Genes annotated by the GO term GO:0044265. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates as carried out by individual cells. www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS View Gene Set 0.002111 625 0.026 67 Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. www.broad.mit.e...
Broad MACROMOLECULE_CATABOLIC_PROCESS View Gene Set 0.00247 135 0.02996 68 Genes annotated by the GO term GO:0009057. The chemical reactions and pathways resulting in the breakdown of a macromolecule any large molecule including proteins nucleic acids and carbohydrates. www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.002562 449 0.03063 69 Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). www.broad.mit.e...
Broad INSULIN_RECEPTOR_SIGNALING_PATHWAY View Gene Set 0.002662 18 0.03065 70 Genes annotated by the GO term GO:0008286. The series of molecular signals generated as a consequence of the insulin receptor binding to insulin. www.broad.mit.e...
Broad NUCLEAR_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.002642 29 0.03065 70 Genes annotated by the GO term GO:0006997. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the nucleus. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 0.002675 659 0.03065 70 Genes annotated by the GO term GO:0048519. Any process that stops prevents or reduces the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELL_CYCLE View Gene Set 0.00276 78 0.03103 73 Genes annotated by the GO term GO:0045786. Any process that stops prevents or reduces the rate or extent of progression through the cell cycle. www.broad.mit.e...
Broad CELL_CYCLE_PHASE View Gene Set 0.002783 167 0.03103 73 Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER View Gene Set 0.002845 285 0.03129 75 Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter. www.broad.mit.e...
Broad VIRAL_REPRODUCTIVE_PROCESS View Gene Set 0.002899 36 0.03147 76 Genes annotated by the GO term GO:0022415. A reproductive process involved in viral reproduction. Usually this is by infection of a host cell replication of the viral genome and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently under particular circumstances 'complete' its life cycle. www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.003032 124 0.03248 77 Genes annotated by the GO term GO:0051128. Any process that modulates the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. www.broad.mit.e...
Broad CERAMIDE_METABOLIC_PROCESS View Gene Set 0.003276 11 0.03465 78 Genes annotated by the GO term GO:0006672. The chemical reactions and pathways involving ceramides any N-acylated sphingoid. www.broad.mit.e...
Broad SPHINGOID_METABOLIC_PROCESS View Gene Set 0.003422 12 0.03573 79 Genes annotated by the GO term GO:0046519. The chemical reactions and pathways involving sphingoids any of a class of compounds comprising sphinganine and its homologues and stereoisomers and derivatives of these compounds. www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397 View Gene Set 0.003517 59 0.03627 80 Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. www.broad.mit.e...
Broad MONOCARBOXYLIC_ACID_METABOLIC_PROCESS View Gene Set 0.003627 86 0.03665 81 Genes annotated by the GO term GO:0032787. The chemical reactions and pathways involving monocarboxylic acids any organic acid containing one carboxyl (COOH) group or anion (COO-). www.broad.mit.e...
Broad RIBOSOME_BIOGENESIS_AND_ASSEMBLY View Gene Set 0.003643 14 0.03665 81 Genes annotated by the GO term GO:0042254. The process of the formation of the constituents of the ribosome subunits their assembly and their transport to the sites of protein synthesis. www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION_EPIGENETIC View Gene Set 0.003701 30 0.03679 83 Genes annotated by the GO term GO:0040029. Any process that modulates the frequency rate or extent of gene expression; the process is mitotically or meiotically heritable or is stably self-propagated in the cytoplasm of a resting cell and does not entail a change in DNA sequence. www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_BIOLOGICAL_PROCESS View Gene Set 0.004684 685 0.046 84 Genes annotated by the GO term GO:0048518. Any process that activates or increases the frequency rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression protein modification or interaction with a protein or substrate molecule. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_METABOLIC_PROCESS View Gene Set 0.004819 255 0.04612 85 Genes annotated by the GO term GO:0009892. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways within a cell or an organism. www.broad.mit.e...
Broad CHROMATIN_MODIFICATION View Gene Set 0.004864 50 0.04612 85 Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure. www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_PHOSPHATE_METABOLIC_PROCESS View Gene Set 0.004769 13 0.04612 85 Genes annotated by the GO term GO:0045936. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving phosphates. www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDE_AND_NUCLEOTIDE_METABOLIC_PROCESS View Gene Set 0.005264 50 0.04813 88 Genes annotated by the GO term GO:0055086. The chemical reactions and pathways involving nucleobases nucleosides and nucleotides. www.broad.mit.e...
Broad VIRAL_INFECTIOUS_CYCLE View Gene Set 0.005309 32 0.04813 88 Genes annotated by the GO term GO:0019058. A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle decoding of genome information translation of viral mRNA by host ribosomes genome replication and assembly and release of viral particles containing the genome. www.broad.mit.e...
Broad CELL_CYCLE_PROCESS View Gene Set 0.005243 187 0.04813 88 Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. www.broad.mit.e...
Broad RAS_PROTEIN_SIGNAL_TRANSDUCTION View Gene Set 0.005304 66 0.04813 88 Genes annotated by the GO term GO:0007265. A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state. www.broad.mit.e...
Broad RHO_PROTEIN_SIGNAL_TRANSDUCTION View Gene Set 0.005368 38 0.04813 92 Genes annotated by the GO term GO:0007266. A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state. www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS View Gene Set 0.005481 457 0.04862 93 Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA. www.broad.mit.e...
Broad PROTEIN_TARGETING_TO_MITOCHONDRION View Gene Set 0.00568 10 0.04984 94 Genes annotated by the GO term GO:0006626. The process of directing proteins towards and into the mitochondrion mediated by mitochondrial proteins that recognize signals contained within the imported protein. www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT View Gene Set 0.005739 452 0.04984 94 Genes annotated by the GO term GO:0006355. Any process that modulates the frequency rate or extent of DNA-dependent transcription. www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CYTOPLASM View Gene Set 4.143e-35 2054 9.654e-33 1 Genes annotated by the GO term GO:0005737. All of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 4.377e-26 1350 5.099e-24 2 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...
Broad ORGANELLE_PART View Gene Set 1.185e-25 1149 6.902e-24 3 Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART View Gene Set 9.499e-26 1144 6.902e-24 3 Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane. www.broad.mit.e...
Broad NUCLEUS View Gene Set 2.021e-18 1353 9.418e-17 5 Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent. www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX View Gene Set 2.161e-16 914 8.394e-15 6 Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together. www.broad.mit.e...
Broad ORGANELLE_MEMBRANE View Gene Set 5.868e-14 290 1.953e-12 7 Genes annotated by the GO term GO:0031090. The lipid bilayer surrounding an organelle. www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 3.158e-13 613 7.358e-12 8 Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE View Gene Set 3.158e-13 613 7.358e-12 8 Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes. www.broad.mit.e...
Broad MITOCHONDRION View Gene Set 2.652e-13 335 7.358e-12 8 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad NUCLEAR_PART View Gene Set 1.962e-11 543 4.155e-10 11 Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX View Gene Set 1.455e-10 129 2.608e-09 12 Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules. www.broad.mit.e...
Broad PROTEIN_COMPLEX View Gene Set 1.425e-10 799 2.608e-09 12 Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups. www.broad.mit.e...
Broad ENDOMEMBRANE_SYSTEM View Gene Set 4.359e-10 213 7.254e-09 14 Genes annotated by the GO term GO:0012505. A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum Golgi bodies vesicles cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. www.broad.mit.e...
Broad ENVELOPE View Gene Set 1.479e-09 165 2.154e-08 15 Genes annotated by the GO term GO:0031975. A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers and may include a cell wall layer also includes the space between layers. www.broad.mit.e...
Broad ORGANELLE_ENVELOPE View Gene Set 1.479e-09 165 2.154e-08 15 Genes annotated by the GO term GO:0031967. A double membrane structure enclosing an organelle including two lipid bilayers and the region between them. In some cases an organelle envelope may have more than two membranes. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM_PART View Gene Set 9.821e-09 93 1.346e-07 17 Genes annotated by the GO term GO:0044432. Any constituent part of the endoplasmic reticulum the irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM View Gene Set 2.837e-08 282 3.673e-07 18 Genes annotated by the GO term GO:0005783. The irregular network of unit membranes visible only by electron microscopy that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels which are often expanded into slitlike cavities called cisternae. The ER takes two forms rough (or granular) with ribosomes adhering to the outer surface and smooth (with no ribosomes attached). www.broad.mit.e...
Broad MITOCHONDRIAL_PART View Gene Set 9.949e-08 140 1.22e-06 19 Genes annotated by the GO term GO:0044429. Any constituent part of a mitochondrion a semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE View Gene Set 1.168e-07 85 1.36e-06 20 Genes annotated by the GO term GO:0031966. Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad ORGANELLE_LUMEN View Gene Set 1.3e-07 434 1.377e-06 21 Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen. www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN View Gene Set 1.3e-07 434 1.377e-06 21 Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM_MEMBRANE View Gene Set 2.442e-07 82 2.474e-06 23 Genes annotated by the GO term GO:0005789. The lipid bilayer surrounding the endoplasmic reticulum. www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 2.815e-07 95 2.732e-06 24 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE_ENDOPLASMIC_RETICULUM_NETWORK View Gene Set 4.507e-07 91 4.201e-06 25 Genes annotated by the GO term GO:0042175. The continuous network of membranes encompassing the outer nuclear membrane and the endoplasmic reticulum. www.broad.mit.e...
Broad RIBOSOME View Gene Set 1.942e-06 39 1.74e-05 26 Genes annotated by the GO term GO:0005840. An intracellular organelle about 200 A in diameter consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits one large and one small each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients expressed in Svedberg units (symbol: S). Hence the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes eukaryotes mitochondria and chloroplasts have characteristically distinct ribosomal proteins. www.broad.mit.e...
Broad NUCLEAR_LUMEN View Gene Set 3.944e-06 365 3.404e-05 27 Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane. www.broad.mit.e...
Broad MITOCHONDRIAL_MEMBRANE_PART View Gene Set 6.608e-06 52 5.499e-05 28 Genes annotated by the GO term GO:0044455. Any constituent part of the mitochondrial membrane either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope. www.broad.mit.e...
Broad CYTOSKELETON View Gene Set 1.13e-05 359 9.078e-05 29 Genes annotated by the GO term GO:0005856. Any of the various filamentous elements that form the internal framework of cells and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments microfilaments microtubules the microtrabecular lattice and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions including cellular movement cell division endocytosis and movement of organelles. www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 1.96e-05 9 0.0001522 30 Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA. www.broad.mit.e...
Broad ACTIN_CYTOSKELETON View Gene Set 2.616e-05 127 0.0001915 31 Genes annotated by the GO term GO:0015629. The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. www.broad.mit.e...
Broad NUCLEOLUS View Gene Set 2.63e-05 116 0.0001915 31 Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. www.broad.mit.e...
Broad MITOCHONDRIAL_INNER_MEMBRANE View Gene Set 2.868e-05 66 0.0002025 33 Genes annotated by the GO term GO:0005743. The inner i.e. lumen-facing lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. www.broad.mit.e...
Broad ORGANELLE_INNER_MEMBRANE View Gene Set 4.26e-05 74 0.000292 34 Genes annotated by the GO term GO:0019866. The inner i.e. lumen-facing lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. www.broad.mit.e...
Broad CYTOSKELETAL_PART View Gene Set 5.109e-05 231 0.0003401 35 Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice. www.broad.mit.e...
Broad CHROMOSOME View Gene Set 0.0001859 122 0.001203 36 Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad ER_GOLGI_INTERMEDIATE_COMPARTMENT View Gene Set 0.0002692 22 0.00165 37 Genes annotated by the GO term GO:0005793. A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex with a distinctive membrane protein composition; involved in ER-to-Golgi transport. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE View Gene Set 0.000267 48 0.00165 37 Genes annotated by the GO term GO:0031965. Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. www.broad.mit.e...
Broad GOLGI_ASSOCIATED_VESICLE View Gene Set 0.0003725 27 0.002225 39 Genes annotated by the GO term GO:0005798. Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME View Gene Set 0.0004583 53 0.00267 40 Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad GOLGI_APPARATUS_PART View Gene Set 0.0005273 98 0.002996 41 Genes annotated by the GO term GO:0044431. Any constituent part of the Golgi apparatus a compound membranous cytoplasmic organelle of eukaryotic cells consisting of flattened ribosome-free vesicles arranged in a more or less regular stack. www.broad.mit.e...
Broad CYTOSOL View Gene Set 0.0005407 203 0.003 42 Genes annotated by the GO term GO:0005829. That part of the cytoplasm that does not contain membranous or particulate subcellular components. www.broad.mit.e...
Broad NUCLEAR_ENVELOPE View Gene Set 0.0005609 71 0.003039 43 Genes annotated by the GO term GO:0005635. The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space a gap of width 20-40 nm (also called the perinuclear space). www.broad.mit.e...
Broad COATED_VESICLE View Gene Set 0.0007381 45 0.003909 44 Genes annotated by the GO term GO:0030135. Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin whereas others are made from other proteins. www.broad.mit.e...
Broad OLIGOSACCHARYL_TRANSFERASE_COMPLEX View Gene Set 0.001053 9 0.005452 45 Genes annotated by the GO term GO:0008250. A multisubunit protein complex in the endoplasmic reticulum membrane of eukaryotes that transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins; includes at least nine different subunits at least in yeast. www.broad.mit.e...
Broad EUKARYOTIC_TRANSLATION_INITIATION_FACTOR_3_COMPLEX View Gene Set 0.001144 10 0.005796 46 Genes annotated by the GO term GO:0005852. A complex of several polypeptides that plays at least two important roles in protein synthesis: First eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. www.broad.mit.e...
Broad CYTOPLASMIC_VESICLE_MEMBRANE View Gene Set 0.001203 26 0.00584 47 Genes annotated by the GO term GO:0030659. The lipid bilayer surrounding a cytoplasmic vesicle. www.broad.mit.e...
Broad CYTOPLASMIC_VESICLE_PART View Gene Set 0.001203 26 0.00584 47 Genes annotated by the GO term GO:0044433. Any constituent part of cytoplasmic vesicle a vesicle formed of membrane or protein found in the cytoplasm of a cell. www.broad.mit.e...
Broad SPLICEOSOME View Gene Set 0.001337 44 0.00636 49 Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron. www.broad.mit.e...
Broad CHROMOSOMAL_PART View Gene Set 0.001804 95 0.008408 50 Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. www.broad.mit.e...
Broad RIBOSOMAL_SUBUNIT View Gene Set 0.002053 20 0.009379 51 Genes annotated by the GO term GO:0033279. Either of the two ribonucleoprotein complexes that associate to form a ribosome. www.broad.mit.e...
Broad VESICLE_MEMBRANE View Gene Set 0.002107 28 0.00944 52 Genes annotated by the GO term GO:0012506. The lipid bilayer surrounding any membrane-bounded vesicle in the cell. www.broad.mit.e...
Broad CLATHRIN_COATED_VESICLE View Gene Set 0.002526 35 0.01111 53 Genes annotated by the GO term GO:0030136. A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. www.broad.mit.e...
Broad NADH_DEHYDROGENASE_COMPLEX View Gene Set 0.002813 15 0.01171 54 Genes annotated by the GO term GO:0030964. An integral membrane complex that possesses NADH oxidoreductase activity. The complex is one of the components of the electron transport chain. It catalyses the transfer of a pair of electrons from NADH to a quinone. www.broad.mit.e...
Broad MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_I View Gene Set 0.002813 15 0.01171 54 Genes annotated by the GO term GO:0005747. A part of the respiratory chain located in the mitochondrion. It contains about 25 different polypeptide subunits including NADH dehydrogenase (ubiquinone) flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III) and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone. www.broad.mit.e...
Broad RESPIRATORY_CHAIN_COMPLEX_I View Gene Set 0.002813 15 0.01171 54 Genes annotated by the GO term GO:0045271. Respiratory chain complex I is an enzyme of the respiratory chain. It consists of at least 34 polypeptide chains and is L-shaped with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix. The electrons of NADH enter the chain at this complex. www.broad.mit.e...
Broad PROTON_TRANSPORTING_TWO_SECTOR_ATPASE_COMPLEX View Gene Set 0.002866 15 0.01171 57 Genes annotated by the GO term GO:0016469. A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0 V0 or A0) that carries out proton transport and a cytoplasmic compartment sector (F1 V1 or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient whereas F-type ATPases also known as ATP synthases normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type A-type ATPases have been found in archaea and are closely related to eukaryotic V-type ATPases but are reversible. www.broad.mit.e...
Broad ENDOPLASMIC_RETICULUM_LUMEN View Gene Set 0.003016 12 0.01211 58 Genes annotated by the GO term GO:0005788. The volume enclosed by the membranes of the endoplasmic reticulum. www.broad.mit.e...
Broad OUTER_MEMBRANE View Gene Set 0.003304 25 0.01305 59 Genes annotated by the GO term GO:0019867. The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. www.broad.mit.e...
Broad NUCLEOPLASM View Gene Set 0.003825 266 0.01467 60 Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus. www.broad.mit.e...
Broad MITOCHONDRIAL_OUTER_MEMBRANE View Gene Set 0.003859 18 0.01467 60 Genes annotated by the GO term GO:0005741. The outer i.e. cytoplasm-facing lipid bilayer of the mitochondrial envelope. www.broad.mit.e...
Broad PROTEASOME_COMPLEX View Gene Set 0.003904 23 0.01467 60 Genes annotated by the GO term GO:0000502. A large multisubunit complex which catalyzes protein degradation. This complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. www.broad.mit.e...
Broad CELL_CORTEX View Gene Set 0.0044 38 0.01627 63 Genes annotated by the GO term GO:0005938. The region of a cell that lies just beneath the plasma membrane and often but not always contains a network of actin filaments and associated proteins. www.broad.mit.e...
Broad CHROMATIN View Gene Set 0.004587 35 0.0167 64 Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome. www.broad.mit.e...
Broad GOLGI_MEMBRANE View Gene Set 0.005585 43 0.02002 65 Genes annotated by the GO term GO:0000139. The lipid bilayer surrounding any of the compartments of the Golgi apparatus. www.broad.mit.e...
Broad NUCLEAR_PORE View Gene Set 0.005791 29 0.02044 66 Genes annotated by the GO term GO:0005643. Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell where the inner and outer nuclear membranes are joined. www.broad.mit.e...
Broad NUCLEAR_MEMBRANE_PART View Gene Set 0.00612 40 0.02128 67 Genes annotated by the GO term GO:0044453. Any constituent part of the nuclear membrane the envelope that surrounds the nucleus of eukaryotic cells. www.broad.mit.e...
Broad ADHERENS_JUNCTION View Gene Set 0.006955 21 0.02383 68 Genes annotated by the GO term GO:0005912. A cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. www.broad.mit.e...
Broad PORE_COMPLEX View Gene Set 0.007109 34 0.02401 69 Genes annotated by the GO term GO:0046930. Any small opening in a membrane that allows the passage of gases and/or liquids. www.broad.mit.e...
Broad ORGANELLE_OUTER_MEMBRANE View Gene Set 0.007638 24 0.02542 70 Genes annotated by the GO term GO:0031968. The outer i.e. cytoplasm-facing lipid bilayer of an organelle envelope. www.broad.mit.e...
Broad GOLGI_APPARATUS View Gene Set 0.00826 222 0.02688 71 Genes annotated by the GO term GO:0005794. A compound membranous cytoplasmic organelle of eukaryotic cells consisting of flattened ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle while in invertebrates and plants where they are known usually as dictyosomes there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis in the vicinity of the cis face trans in the vicinity of the trans face and medial lying between the cis and trans regions. www.broad.mit.e...
Broad TRANS_GOLGI_NETWORK_TRANSPORT_VESICLE View Gene Set 0.008307 11 0.02688 71 Genes annotated by the GO term GO:0030140. A vesicle that mediates transport between the trans-Golgi network and other parts of the cell. www.broad.mit.e...
Broad INTRINSIC_TO_ENDOPLASMIC_RETICULUM_MEMBRANE View Gene Set 0.009054 24 0.02787 73 Genes annotated by the GO term GO:0031227. Located in the endoplasmic reticulum membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane. www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX View Gene Set 0.00886 20 0.02787 73 Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs. www.broad.mit.e...
Broad INTEGRAL_TO_ENDOPLASMIC_RETICULUM_MEMBRANE View Gene Set 0.009054 24 0.02787 73 Genes annotated by the GO term GO:0030176. Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. www.broad.mit.e...
Broad ENDOSOME View Gene Set 0.009091 64 0.02787 73 Genes annotated by the GO term GO:0005768. A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. www.broad.mit.e...
Broad SYNAPTIC_VESICLE View Gene Set 0.0109 15 0.03299 77 Genes annotated by the GO term GO:0008021. Secretory organelles some 50 nm in diameter of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane. www.broad.mit.e...
Broad MICROTUBULE_ASSOCIATED_COMPLEX View Gene Set 0.01142 47 0.034 78 Genes annotated by the GO term GO:0005875. Any multimeric complex connected to a microtubule. www.broad.mit.e...
Broad INSOLUBLE_FRACTION View Gene Set 0.01153 14 0.034 78 Genes annotated by the GO term GO:0005626. That fraction of cells prepared by disruptive biochemical methods that is not soluble in water. www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART View Gene Set 0.0127 33 0.037 80 Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell. www.broad.mit.e...
Broad EARLY_ENDOSOME View Gene Set 0.01354 18 0.03896 81 Genes annotated by the GO term GO:0005769. Small irregularly shaped intracellular vesicles to which endocytosed molecules are initially delivered. www.broad.mit.e...
Broad PERINUCLEAR_REGION_OF_CYTOPLASM View Gene Set 0.01497 55 0.04202 82 Genes annotated by the GO term GO:0048471. Cytoplasm situated near or occurring around the nucleus. www.broad.mit.e...
Broad TRANS_GOLGI_NETWORK View Gene Set 0.01492 21 0.04202 82 Genes annotated by the GO term GO:0005802. The network of interconnected tubular and cisternal structures located at the side of the Golgi apparatus distal to the endoplasmic reticulum from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination. www.broad.mit.e...
Broad CELL_MATRIX_JUNCTION View Gene Set 0.01567 16 0.04347 84 Genes annotated by the GO term GO:0030055. A specialized region of connection between a cell and the extracellular matrix. www.broad.mit.e...
Broad PROTEIN_SERINE_THREONINE_PHOSPHATASE_COMPLEX View Gene Set 0.01682 10 0.04568 85 Genes annotated by the GO term GO:0008287. A complex normally consisting of a catalytic and a regulatory subunit which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein. www.broad.mit.e...
Broad MICROBODY View Gene Set 0.01706 46 0.04568 85 Genes annotated by the GO term GO:0042579. Cytoplasmic organelles spherical or oval in shape that are bounded by a single membrane and contain oxidative enzymes especially those utilizing hydrogen peroxide (H2O2). www.broad.mit.e...
Broad PEROXISOME View Gene Set 0.01706 46 0.04568 85 Genes annotated by the GO term GO:0005777. A small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2). www.broad.mit.e...
Broad RUFFLE View Gene Set 0.01786 31 0.04676 88 Genes annotated by the GO term GO:0001726. Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork. www.broad.mit.e...
Broad CORTICAL_ACTIN_CYTOSKELETON View Gene Set 0.01772 13 0.04676 88 Genes annotated by the GO term GO:0030864. The portion of the actin cytoskeleton comprising filamentous actin and associated proteins that lies just beneath the plasma membrane. www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad RNA_BINDING View Gene Set 4.051e-23 236 1.604e-20 1 Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof. www.broad.mit.e...
Broad STRUCTURAL_CONSTITUENT_OF_RIBOSOME View Gene Set 3.336e-16 80 6.605e-14 2 Genes annotated by the GO term GO:0003735. The action of a molecule that contributes to the structural integrity of the ribosome. www.broad.mit.e...
Broad STRUCTURAL_MOLECULE_ACTIVITY View Gene Set 6.091e-08 243 8.04e-06 3 Genes annotated by the GO term GO:0005198. The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell. www.broad.mit.e...
Broad IDENTICAL_PROTEIN_BINDING View Gene Set 3.827e-07 300 3.789e-05 4 Genes annotated by the GO term GO:0042802. Interacting selectively with an identical protein or proteins. www.broad.mit.e...
Broad TRANSLATION_REGULATOR_ACTIVITY View Gene Set 7.985e-07 41 6.324e-05 5 Genes annotated by the GO term GO:0045182. Any substance involved in the initiation activation perpetuation repression or termination of polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad TRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING View Gene Set 9.737e-07 39 6.426e-05 6 Genes annotated by the GO term GO:0008135. Functions during translation by binding nucleic acids during polypeptide synthesis at the ribosome. www.broad.mit.e...
Broad TRANSLATION_INITIATION_FACTOR_ACTIVITY View Gene Set 1.355e-06 24 7.667e-05 7 Genes annotated by the GO term GO:0003743. Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. www.broad.mit.e...
Broad PROTEIN_HETERODIMERIZATION_ACTIVITY View Gene Set 3.221e-06 77 0.0001594 8 Genes annotated by the GO term GO:0046982. Interacting selectively with a nonidentical protein to form a heterodimer. www.broad.mit.e...
Broad CYTOSKELETAL_PROTEIN_BINDING View Gene Set 7.471e-06 158 0.0003287 9 Genes annotated by the GO term GO:0008092. Interacting selectively with any protein component of any cytoskeleton (actin microtubule or intermediate filament cytoskeleton). www.broad.mit.e...
Broad HYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDES View Gene Set 2.356e-05 224 0.0008136 10 Genes annotated by the GO term GO:0016817. Catalysis of the hydrolysis of any acid anhydride. www.broad.mit.e...
Broad NUCLEOSIDE_TRIPHOSPHATASE_ACTIVITY View Gene Set 2.466e-05 208 0.0008136 10 Genes annotated by the GO term GO:0017111. Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate. www.broad.mit.e...
Broad PYROPHOSPHATASE_ACTIVITY View Gene Set 2.434e-05 222 0.0008136 10 Genes annotated by the GO term GO:0016462. Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups leaving one phosphate on each of the two fragments. www.broad.mit.e...
Broad LIGASE_ACTIVITY View Gene Set 5.296e-05 97 0.001613 13 Genes annotated by the GO term GO:0016874. Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. www.broad.mit.e...
Broad ACTIN_BINDING View Gene Set 0.0001459 76 0.003737 14 Genes annotated by the GO term GO:0003779. Interacting selectively with monomeric or multimeric forms of actin including actin filaments. www.broad.mit.e...
Broad TRANSFERASE_ACTIVITY_TRANSFERRING_ALKYL_OR_ARYLOTHER_THAN_METHYLGROUPS View Gene Set 0.0001409 30 0.003737 14 Genes annotated by the GO term GO:0016765. Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). www.broad.mit.e...
Broad PROTEIN_DIMERIZATION_ACTIVITY View Gene Set 0.000151 181 0.003737 14 Genes annotated by the GO term GO:0046983. The formation of a protein dimer a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. www.broad.mit.e...
Broad SIGNAL_SEQUENCE_BINDING View Gene Set 0.0002235 15 0.005206 17 Genes annotated by the GO term GO:0005048. Interacting selectively with a signal sequence a specific peptide sequence found on protein precursors or mature proteins that dictates where the mature protein is localized. www.broad.mit.e...
Broad ENZYME_BINDING View Gene Set 0.0003683 175 0.008104 18 Genes annotated by the GO term GO:0019899. Interacting selectively with any enzyme. www.broad.mit.e...
Broad OXIDOREDUCTASE_ACTIVITY View Gene Set 0.0004828 280 0.00956 19 Genes annotated by the GO term GO:0016491. Catalysis of an oxidation-reduction (redox) reaction a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized while the other acts as hydrogen or electron acceptor and becomes reduced. www.broad.mit.e...
Broad DNA_BINDING View Gene Set 0.0004609 587 0.00956 19 Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid). www.broad.mit.e...
Broad PROTEIN_PHOSPHATASE_TYPE_2A_REGULATOR_ACTIVITY View Gene Set 0.000745 14 0.01405 21 Genes annotated by the GO term GO:0008601. Modulation of the activity of the enzyme protein phosphatase type 2A. www.broad.mit.e...
Broad RNA_DEPENDENT_ATPASE_ACTIVITY View Gene Set 0.0008656 18 0.01521 22 Genes annotated by the GO term GO:0008186. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of RNA; drives another reaction. www.broad.mit.e...
Broad ATPASE_ACTIVITY View Gene Set 0.0008832 109 0.01521 22 Genes annotated by the GO term GO:0016887. Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction. www.broad.mit.e...
Broad UNFOLDED_PROTEIN_BINDING View Gene Set 0.001036 41 0.01709 24 Genes annotated by the GO term GO:0051082. Interacting selectively with an unfolded protein. www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS View Gene Set 0.001178 68 0.01865 25 Genes annotated by the GO term GO:0016879. Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad MRNA_BINDING View Gene Set 0.001365 22 0.02078 26 Genes annotated by the GO term GO:0003729. Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA). www.broad.mit.e...
Broad RNA_HELICASE_ACTIVITY View Gene Set 0.001927 24 0.02825 27 Genes annotated by the GO term GO:0003724. Catalysis of the unwinding of an RNA helix. www.broad.mit.e...
Broad LIGASE_ACTIVITY_FORMING_CARBON_OXYGEN_BONDS View Gene Set 0.001998 14 0.02825 27 Genes annotated by the GO term GO:0016875. Catalysis of the ligation of two substances via a carbon-oxygen bond with concomitant breakage of a diphosphate linkage usually in a nucleoside triphosphate. www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING View Gene Set 0.002177 34 0.02972 29 Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA. www.broad.mit.e...
Broad ATP_DEPENDENT_RNA_HELICASE_ACTIVITY View Gene Set 0.002371 17 0.03029 30 Genes annotated by the GO term GO:0004004. Catalysis of the reaction: ATP + H2O = ADP + phosphate driving the unwinding of an RNA helix. www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_BINDING View Gene Set 0.002297 300 0.03029 30 Genes annotated by the GO term GO:0008134. Interacting selectively with a transcription factor any protein required to initiate or regulate transcription. www.broad.mit.e...
Broad CHROMATIN_BINDING View Gene Set 0.002804 32 0.0347 32 Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase. www.broad.mit.e...
Broad TUBULIN_BINDING View Gene Set 0.003049 46 0.03551 33 Genes annotated by the GO term GO:0015631. Interacting selectively with monomeric or multimeric forms of tubulin including microtubules. www.broad.mit.e...
Broad CYSTEINE_TYPE_ENDOPEPTIDASE_ACTIVITY View Gene Set 0.002964 40 0.03551 33 Genes annotated by the GO term GO:0004197. Catalysis of the hydrolysis of nonterminal peptide linkages in oligopeptides or polypeptides; a cysteine residue is at the active center. www.broad.mit.e...
Broad TRANSCRIPTION_COFACTOR_ACTIVITY View Gene Set 0.003186 222 0.03605 35 Genes annotated by the GO term GO:0003712. The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself. www.broad.mit.e...
Broad INTRAMOLECULAR_OXIDOREDUCTASE_ACTIVITY View Gene Set 0.003627 18 0.0399 36 Genes annotated by the GO term GO:0016860. Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor are the same molecule and no oxidized product appears. www.broad.mit.e...
Broad PROTEIN_HOMODIMERIZATION_ACTIVITY View Gene Set 0.003953 120 0.0423 37 Genes annotated by the GO term GO:0042803. Interacting selectively with an identical protein to form a homodimer. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15635413 View Gene Set 3.139e-37 421 7.87e-34 1 Nucleolar proteome dynamics. www.ncbi.nlm.ni...
PMID 15302935 View Gene Set 2.5e-31 773 3.134e-28 2 Large-scale characterization of HeLa cell nuclear phosphoproteins. www.ncbi.nlm.ni...
PMID 11790298 View Gene Set 2.312e-28 208 1.932e-25 3 Directed proteomic analysis of the human nucleolus. www.ncbi.nlm.ni...
PMID 17643375 View Gene Set 2.558e-24 391 1.603e-21 4 Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. www.ncbi.nlm.ni...
PMID 15592455 View Gene Set 2.466e-22 317 1.237e-19 5 Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. www.ncbi.nlm.ni...
PMID 8619474 View Gene Set 8.824e-22 534 3.687e-19 6 A "double adaptor" method for improved shotgun library construction. www.ncbi.nlm.ni...
PMID 9110174 View Gene Set 1.87e-21 528 6.697e-19 7 Large-scale concatenation cDNA sequencing. www.ncbi.nlm.ni...
PMID 16964243 View Gene Set 3.326e-21 504 1.042e-18 8 A probability-based approach for high-throughput protein phosphorylation analysis and site localization. www.ncbi.nlm.ni...
PMID 15189156 View Gene Set 6.618e-20 88 1.843e-17 9 The molecular mechanics of eukaryotic translation. www.ncbi.nlm.ni...
PMID 8722009 View Gene Set 5.166e-18 80 1.295e-15 10 Structure and evolution of mammalian ribosomal proteins. www.ncbi.nlm.ni...
PMID 9582194 View Gene Set 1.357e-15 67 3.093e-13 11 A map of 75 human ribosomal protein genes. www.ncbi.nlm.ni...
PMID 14559993 View Gene Set 3.05e-15 51 6.373e-13 12 Regulation of alternative splicing by SRrp86 and its interacting proteins. www.ncbi.nlm.ni...
PMID 17220478 View Gene Set 6.453e-15 63 1.245e-12 13 Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells. www.ncbi.nlm.ni...
PMID 11042152 View Gene Set 1.91e-14 315 3.42e-12 14 Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. www.ncbi.nlm.ni...
PMID 15231747 View Gene Set 2.107e-13 212 3.521e-11 15 A protein interaction framework for human mRNA degradation. www.ncbi.nlm.ni...
PMID 16236267 View Gene Set 2.354e-13 77 3.688e-11 16 Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress. www.ncbi.nlm.ni...
PMID 12588972 View Gene Set 6.937e-13 56 1.023e-10 17 Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region. www.ncbi.nlm.ni...
PMID 14567916 View Gene Set 1.418e-12 50 1.974e-10 18 Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control. www.ncbi.nlm.ni...
PMID 15952740 View Gene Set 1.656e-12 58 2.185e-10 19 Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry. www.ncbi.nlm.ni...
PMID 16130169 View Gene Set 2.998e-12 74 3.758e-10 20 Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. www.ncbi.nlm.ni...
PMID 15782174 View Gene Set 4.56e-12 31 5.444e-10 21 Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. www.ncbi.nlm.ni...
PMID 19710015 View Gene Set 5.439e-12 48 5.928e-10 22 The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor. www.ncbi.nlm.ni...
PMID 7821789 View Gene Set 5.209e-12 59 5.928e-10 22 Construction of a human full-length cDNA bank. www.ncbi.nlm.ni...
PMID 12226669 View Gene Set 1.015e-11 108 1.061e-09 24 Comprehensive proteomic analysis of the human spliceosome. www.ncbi.nlm.ni...
PMID 16303743 View Gene Set 2.028e-11 427 2.034e-09 25 Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. www.ncbi.nlm.ni...
PMID 17289661 View Gene Set 5.288e-09 35 5.099e-07 26 Molecular composition of IMP1 ribonucleoprotein granules. www.ncbi.nlm.ni...
PMID 12665801 View Gene Set 5.755e-09 261 5.343e-07 27 Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. www.ncbi.nlm.ni...
PMID 11991638 View Gene Set 5.984e-09 74 5.357e-07 28 Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. www.ncbi.nlm.ni...
PMID 15324660 View Gene Set 7.009e-09 242 6.059e-07 29 Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization. www.ncbi.nlm.ni...
PMID 12706105 View Gene Set 7.391e-09 182 6.176e-07 30 Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. www.ncbi.nlm.ni...
PMID 11875025 View Gene Set 9.04e-09 41 7.181e-07 31 The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. www.ncbi.nlm.ni...
PMID 16341674 View Gene Set 9.166e-09 392 7.181e-07 31 Transcriptome analysis of human gastric cancer. www.ncbi.nlm.ni...
PMID 10810093 View Gene Set 1.618e-08 151 1.229e-06 33 Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. www.ncbi.nlm.ni...
PMID 8706699 View Gene Set 1.915e-08 35 1.412e-06 34 Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing and mass spectrometry. www.ncbi.nlm.ni...
PMID 15231748 View Gene Set 4.255e-08 519 3.048e-06 35 Functional proteomics mapping of a human signaling pathway. www.ncbi.nlm.ni...
PMID 12388589 View Gene Set 4.554e-08 17 3.172e-06 36 A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. www.ncbi.nlm.ni...
PMID 15498874 View Gene Set 4.808e-08 113 3.258e-06 37 Large-scale cDNA transfection screening for genes related to cancer development and progression. www.ncbi.nlm.ni...
PMID 17081065 View Gene Set 5.42e-08 80 3.576e-06 38 Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. www.ncbi.nlm.ni...
PMID 11401437 View Gene Set 6.83e-08 27 4.39e-06 39 A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. www.ncbi.nlm.ni...
PMID 16565220 View Gene Set 7.386e-08 210 4.629e-06 40 Phosphoproteome analysis of the human mitotic spindle. www.ncbi.nlm.ni...
PMID 15383276 View Gene Set 8.799e-08 67 5.38e-06 41 A protein interaction network links GIT1 an enhancer of huntingtin aggregation to Huntington's disease. www.ncbi.nlm.ni...
PMID 16094384 View Gene Set 1.012e-07 80 6.041e-06 42 Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. www.ncbi.nlm.ni...
PMID 18809582 View Gene Set 1.653e-07 25 9.637e-06 43 Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome. www.ncbi.nlm.ni...
PMID 20085707 View Gene Set 1.72e-07 42 9.801e-06 44 Aire's partners in the molecular control of immunological tolerance. www.ncbi.nlm.ni...
PMID 15883184 View Gene Set 2.336e-07 31 1.301e-05 45 Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes. www.ncbi.nlm.ni...
PMID 10931946 View Gene Set 3.928e-07 118 2.112e-05 46 Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. www.ncbi.nlm.ni...
PMID 12429849 View Gene Set 3.959e-07 106 2.112e-05 46 Functional proteomic analysis of human nucleolus. www.ncbi.nlm.ni...
PMID 16713569 View Gene Set 4.596e-07 570 2.401e-05 48 A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. www.ncbi.nlm.ni...
PMID 11531413 View Gene Set 9.151e-07 27 4.682e-05 49 HIV-1 Vpr induces cell cycle G2 arrest in fission yeast (Schizosaccharomyces pombe) through a pathway involving regulatory and catalytic subunits of PP2A and acting on both Wee1 and Cdc25. www.ncbi.nlm.ni...
PMID 12962325 View Gene Set 1.158e-06 22 5.807e-05 50 Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. www.ncbi.nlm.ni...
PMID 8076819 View Gene Set 1.85e-06 37 9.093e-05 51 The addition of 5'-coding information to a 3'-directed cDNA library improves analysis of gene expression. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 1.896e-06 58 9.14e-05 52 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 15456888 View Gene Set 2.245e-06 24 0.0001062 53 The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo. www.ncbi.nlm.ni...
PMID 18377426 View Gene Set 2.799e-06 20 0.0001299 54 Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex. www.ncbi.nlm.ni...
PMID 11101529 View Gene Set 3.139e-06 34 0.0001415 55 Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. www.ncbi.nlm.ni...
PMID 15489336 View Gene Set 3.161e-06 722 0.0001415 55 From ORFeome to biology: a functional genomics pipeline. www.ncbi.nlm.ni...
PMID 11285280 View Gene Set 3.38e-06 62 0.0001487 57 Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. www.ncbi.nlm.ni...
PMID 12791267 View Gene Set 3.999e-06 50 0.0001729 58 Prophase destruction of Emi1 by the SCF(betaTrCP/Slimb) ubiquitin ligase activates the anaphase promoting complex to allow progression beyond prometaphase. www.ncbi.nlm.ni...
PMID 18162579 View Gene Set 4.105e-06 22 0.0001744 59 Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1. www.ncbi.nlm.ni...
PMID 16381901 View Gene Set 4.301e-06 720 0.0001797 60 The LIFEdb database in 2006. www.ncbi.nlm.ni...
PMID 2286373 View Gene Set 5.879e-06 12 0.0002416 61 Human metallothionein genes: structure of the functional locus at 16q13. www.ncbi.nlm.ni...
PMID 15308636 View Gene Set 8.564e-06 25 0.0003462 62 Proteomics of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membranes from brefeldin A-treated HepG2 cells identifies ERGIC-32 a new cycling protein that interacts with human Erv46. www.ncbi.nlm.ni...
PMID 7788527 View Gene Set 8.7e-06 42 0.0003462 62 Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 16083285 View Gene Set 9.591e-06 59 0.0003757 64 Global phosphoproteome of HT-29 human colon adenocarcinoma cells. www.ncbi.nlm.ni...
PMID 19596235 View Gene Set 9.824e-06 85 0.0003789 65 Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. www.ncbi.nlm.ni...
PMID 1602151 View Gene Set 1.131e-05 99 0.0004297 66 Treatment of Haemophilus aphrophilus endocarditis with ciprofloxacin. www.ncbi.nlm.ni...
PMID 11230166 View Gene Set 1.176e-05 748 0.0004401 67 Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. www.ncbi.nlm.ni...
PMID 19019082 View Gene Set 1.352e-05 49 0.0004983 68 Proteomic analysis reveals Hrs ubiquitin-interacting motif-mediated ubiquitin signaling in multiple cellular processes. www.ncbi.nlm.ni...
PMID 18715871 View Gene Set 1.5e-05 20 0.0005416 69 PP4R4/KIAA1622 forms a novel stable cytosolic complex with phosphoprotein phosphatase 4. www.ncbi.nlm.ni...
PMID 9150948 View Gene Set 1.512e-05 15 0.0005416 69 A two-dimensional gel database of human colon carcinoma proteins. www.ncbi.nlm.ni...
PMID 16916647 View Gene Set 1.928e-05 76 0.0006806 71 Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. www.ncbi.nlm.ni...
PMID 10893419 View Gene Set 2.151e-05 41 0.0007003 72 Degradation of HIV-1 integrase by the N-end rule pathway. www.ncbi.nlm.ni...
PMID 12419264 View Gene Set 2.151e-05 41 0.0007003 72 The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing. www.ncbi.nlm.ni...
PMID 12539042 View Gene Set 2.114e-05 45 0.0007003 72 HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophages. www.ncbi.nlm.ni...
PMID 14550573 View Gene Set 2.151e-05 41 0.0007003 72 Human immunodeficiency virus-1 Tat protein interacts with distinct proteasomal alpha and beta subunits. www.ncbi.nlm.ni...
PMID 7584026 View Gene Set 2.113e-05 43 0.0007003 72 Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1. www.ncbi.nlm.ni...
PMID 9079628 View Gene Set 2.151e-05 41 0.0007003 72 HIV-1 tat inhibits the 20 S proteasome and its 11 S regulator-mediated activation. www.ncbi.nlm.ni...
PMID 14667819 View Gene Set 2.571e-05 112 0.0008262 78 Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. www.ncbi.nlm.ni...
PMID 16097034 View Gene Set 2.776e-05 36 0.0008811 79 Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC. www.ncbi.nlm.ni...
PMID 14564014 View Gene Set 3.097e-05 47 0.0009704 80 Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. www.ncbi.nlm.ni...
PMID 19405953 View Gene Set 3.271e-05 25 0.001012 81 Proteome analysis of schizophrenia patients Wernicke's area reveals an energy metabolism dysregulation. www.ncbi.nlm.ni...
PMID 15835887 View Gene Set 3.687e-05 12 0.001127 82 Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61 TRAP and two potential new subunits. www.ncbi.nlm.ni...
PMID 12719574 View Gene Set 4.21e-05 42 0.001135 83 Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions. www.ncbi.nlm.ni...
PMID 12750511 View Gene Set 4.21e-05 42 0.001135 83 Hypermutation of HIV-1 DNA in the absence of the Vif protein. www.ncbi.nlm.ni...
PMID 12830140 View Gene Set 4.21e-05 42 0.001135 83 DNA deamination: not just a trigger for antibody diversification but also a mechanism for defense against retroviruses. www.ncbi.nlm.ni...
PMID 12840737 View Gene Set 4.21e-05 42 0.001135 83 Good to CU. www.ncbi.nlm.ni...
PMID 1286667 View Gene Set 4.087e-05 45 0.001135 83 Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes. www.ncbi.nlm.ni...
PMID 12914693 View Gene Set 4.21e-05 42 0.001135 83 Death by deamination: a novel host restriction system for HIV-1. www.ncbi.nlm.ni...
PMID 12920286 View Gene Set 4.21e-05 42 0.001135 83 Virology. Weapons of mutational destruction. www.ncbi.nlm.ni...
PMID 14614829 View Gene Set 4.21e-05 42 0.001135 83 The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G. www.ncbi.nlm.ni...
PMID 19165527 View Gene Set 3.779e-05 84 0.001135 83 Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia. www.ncbi.nlm.ni...
PMID 9811770 View Gene Set 4.21e-05 42 0.001135 83 An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein. www.ncbi.nlm.ni...
PMID 9846577 View Gene Set 4.21e-05 42 0.001135 83 Evidence for a newly discovered cellular anti-HIV-1 phenotype. www.ncbi.nlm.ni...
PMID 15862967 View Gene Set 4.346e-05 50 0.001154 94 Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin. www.ncbi.nlm.ni...
PMID 20381070 View Gene Set 4.373e-05 40 0.001154 94 Sex-specific proteome differences in the anterior cingulate cortex of schizophrenia. www.ncbi.nlm.ni...
PMID 10508479 View Gene Set 4.691e-05 63 0.001225 96 Antigens recognized by autologous antibody in patients with renal-cell carcinoma. www.ncbi.nlm.ni...
PMID 12840015 View Gene Set 4.793e-05 12 0.001239 97 Nuclear coactivator-62 kDa/Ski-interacting protein is a nuclear matrix-associated coactivator that may couple vitamin D receptor-mediated transcription and RNA splicing. www.ncbi.nlm.ni...
PMID 11078522 View Gene Set 5.057e-05 12 0.001281 98 The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes. www.ncbi.nlm.ni...
PMID 9763677 View Gene Set 5.025e-05 15 0.001281 98 Intron based radiation hybrid mapping of 15 complex I genes of the human electron transport chain. www.ncbi.nlm.ni...
PMID 8811196 View Gene Set 5.326e-05 37 0.001335 100 Structure and functions of the 20S and 26S proteasomes. www.ncbi.nlm.ni...
PMID 19047128 View Gene Set 5.599e-05 19 0.00139 101 Single nucleotide polymorphisms of microRNA machinery genes modify the risk of renal cell carcinoma. www.ncbi.nlm.ni...
PMID 15146197 View Gene Set 5.928e-05 693 0.001457 102 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. www.ncbi.nlm.ni...
PMID 11984006 View Gene Set 6.089e-05 27 0.001482 103 The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins. www.ncbi.nlm.ni...
PMID 12228227 View Gene Set 6.59e-05 30 0.001588 104 Docking of HIV-1 Vpr to the nuclear envelope is mediated by the interaction with the nucleoporin hCG1. www.ncbi.nlm.ni...
PMID 19048631 View Gene Set 7.464e-05 29 0.001782 105 Oral facial clefts and gene polymorphisms in metabolism of folate/one-carbon and vitamin A: a pathway-wide association study. www.ncbi.nlm.ni...
PMID 10921877 View Gene Set 7.805e-05 20 0.001829 106 Human immunodeficiency virus type 1 Vpr-mediated G(2) cell cycle arrest: Vpr interferes with cell cycle signaling cascades by interacting with the B subunit of serine/threonine protein phosphatase 2A. www.ncbi.nlm.ni...
PMID 12110603 View Gene Set 7.805e-05 20 0.001829 106 Human immunodeficiency virus type 1 Vpr-mediated G(2) cell cycle arrest: Vpr interferes with cell cycle signaling cascades by interacting with the B subunit of serine/threonine protein phosphatase 2A. www.ncbi.nlm.ni...
PMID 12859895 View Gene Set 8.082e-05 47 0.001842 108 Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif. www.ncbi.nlm.ni...
PMID 16582619 View Gene Set 8.067e-05 15 0.001842 108 Identification of novel ARF binding proteins by two-hybrid screening. www.ncbi.nlm.ni...
PMID 19738611 View Gene Set 8.027e-05 39 0.001842 108 Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis. www.ncbi.nlm.ni...
PMID 12754519 View Gene Set 9.147e-05 71 0.002066 111 Identification and quantification of N-linked glycoproteins using hydrazide chemistry stable isotope labeling and mass spectrometry. www.ncbi.nlm.ni...
PMID 16712791 View Gene Set 0.0001027 342 0.002298 112 Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. www.ncbi.nlm.ni...
PMID 11784859 View Gene Set 0.000106 16 0.002351 113 Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1). www.ncbi.nlm.ni...
PMID 11013263 View Gene Set 0.0001167 16 0.002398 114 A novel nuclear receptor corepressor complex N-CoR contains components of the mammalian SWI/SNF complex and the corepressor KAP-1. www.ncbi.nlm.ni...
PMID 11076863 View Gene Set 0.0001221 794 0.002398 114 DNA cloning using in vitro site-specific recombination. www.ncbi.nlm.ni...
PMID 11551941 View Gene Set 0.0001153 26 0.002398 114 The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 12167863 View Gene Set 0.0001224 43 0.002398 114 Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. www.ncbi.nlm.ni...
PMID 12808465 View Gene Set 0.0001224 43 0.002398 114 The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. www.ncbi.nlm.ni...
PMID 12808466 View Gene Set 0.0001224 43 0.002398 114 Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. www.ncbi.nlm.ni...
PMID 12809610 View Gene Set 0.0001224 43 0.002398 114 DNA deamination mediates innate immunity to retroviral infection. www.ncbi.nlm.ni...
PMID 12970355 View Gene Set 0.0001224 43 0.002398 114 The enzymatic activity of CEM15/Apobec-3G is essential for the regulation of the infectivity of HIV-1 virion but not a sole determinant of its antiviral activity. www.ncbi.nlm.ni...
PMID 14527406 View Gene Set 0.0001224 43 0.002398 114 HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. www.ncbi.nlm.ni...
PMID 14528300 View Gene Set 0.0001224 43 0.002398 114 The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. www.ncbi.nlm.ni...
PMID 14528301 View Gene Set 0.0001224 43 0.002398 114 HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation. www.ncbi.nlm.ni...
PMID 14557625 View Gene Set 0.0001224 43 0.002398 114 The human immunodeficiency virus type 1 Vif protein reduces intracellular expression and inhibits packaging of APOBEC3G (CEM15) a cellular inhibitor of virus infectivity. www.ncbi.nlm.ni...
PMID 15029244 View Gene Set 0.0001113 57 0.002398 114 Mammalian Cdh1/Fzr mediates its own degradation. www.ncbi.nlm.ni...
PMID 9039502 View Gene Set 0.0001211 84 0.002398 114 Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. www.ncbi.nlm.ni...
PMID 9822659 View Gene Set 0.0001143 11 0.002398 114 Characterization of cDNAs encoding the p44 and p35 subunits of human translation initiation factor eIF3. www.ncbi.nlm.ni...
PMID 11031247 View Gene Set 0.0001306 51 0.002537 129 Secretory protein trafficking and organelle dynamics in living cells. www.ncbi.nlm.ni...
PMID 12665591 View Gene Set 0.000137 10 0.002643 130 Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner. www.ncbi.nlm.ni...
PMID 15747776 View Gene Set 0.0001412 14 0.002703 131 Dose-dependent transcriptome changes by metal ores on a human acute lymphoblastic leukemia cell line. www.ncbi.nlm.ni...
PMID 14729942 View Gene Set 0.0001478 18 0.002807 132 Identification of phosphoproteins and their phosphorylation sites in the WEHI-231 B lymphoma cell line. www.ncbi.nlm.ni...
PMID 7584028 View Gene Set 0.0001507 37 0.002842 133 Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1 (supplement). www.ncbi.nlm.ni...
PMID 20516191 View Gene Set 0.0001546 12 0.002892 134 A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). www.ncbi.nlm.ni...
PMID 11256614 View Gene Set 0.0001664 522 0.00309 135 Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. www.ncbi.nlm.ni...
PMID 17540176 View Gene Set 0.0001678 28 0.003094 136 The tumor suppressor PP2A Abeta regulates the RalA GTPase. www.ncbi.nlm.ni...
PMID 9472028 View Gene Set 0.0001716 12 0.00314 137 SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells. www.ncbi.nlm.ni...
PMID 16289162 View Gene Set 0.0002011 35 0.003654 138 The identification of myocilin-associated proteins in the human trabecular meshwork. www.ncbi.nlm.ni...
PMID 12639940 View Gene Set 0.0002085 18 0.003713 139 Rab8B GTPase and junction dynamics in the testis. www.ncbi.nlm.ni...
PMID 15009096 View Gene Set 0.0002067 39 0.003713 139 Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase. www.ncbi.nlm.ni...
PMID 17215244 View Gene Set 0.0002103 31 0.003713 139 Purification and identification of G protein-coupled receptor protein complexes under native conditions. www.ncbi.nlm.ni...
PMID 18697920 View Gene Set 0.0002094 14 0.003713 139 The role of human ribosomal proteins in the maturation of rRNA and ribosome production. www.ncbi.nlm.ni...
PMID 11252894 View Gene Set 0.0002412 44 0.004004 143 Three ways to make a vesicle. www.ncbi.nlm.ni...
PMID 11714285 View Gene Set 0.0002404 11 0.004004 143 The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function. www.ncbi.nlm.ni...
PMID 16055448 View Gene Set 0.0002404 11 0.004004 143 The C-terminal appended domain of human cytosolic leucyl-tRNA synthetase is indispensable in its interaction with arginyl-tRNA synthetase in the multi-tRNA synthetase complex. www.ncbi.nlm.ni...
PMID 8052601 View Gene Set 0.0002404 11 0.004004 143 Human cytoplasmic isoleucyl-tRNA synthetase: selective divergence of the anticodon-binding domain and acquisition of a new structural unit. www.ncbi.nlm.ni...
PMID 8078941 View Gene Set 0.0002404 11 0.004004 143 Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer. www.ncbi.nlm.ni...
PMID 8188258 View Gene Set 0.0002404 11 0.004004 143 The human EPRS locus (formerly the QARS locus): a gene encoding a class I and a class II aminoacyl-tRNA synthetase. www.ncbi.nlm.ni...
PMID 8449960 View Gene Set 0.0002404 11 0.004004 143 Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix. www.ncbi.nlm.ni...
PMID 9278442 View Gene Set 0.0002404 11 0.004004 143 Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant. www.ncbi.nlm.ni...
PMID 9878551 View Gene Set 0.0002361 34 0.004004 143 cDNA of eight nuclear encoded subunits of NADH:ubiquinone oxidoreductase: human complex I cDNA characterization completed. www.ncbi.nlm.ni...
PMID 17148452 View Gene Set 0.0002428 87 0.004005 152 Characterization of the interactome of the human MutL homologues MLH1 PMS1 and PMS2. www.ncbi.nlm.ni...
PMID 18276110 View Gene Set 0.0002581 16 0.00423 153 E3 ubiquitin ligase SIAH1 mediates ubiquitination and degradation of TRB3. www.ncbi.nlm.ni...
PMID 8995409 View Gene Set 0.0002663 11 0.004308 154 Conservation and diversity of eukaryotic translation initiation factor eIF3. www.ncbi.nlm.ni...
PMID 8995410 View Gene Set 0.0002663 10 0.004308 154 The human homologue of the yeast Prt1 protein is an integral part of the eukaryotic initiation factor 3 complex and interacts with p170. www.ncbi.nlm.ni...
PMID 11591653 View Gene Set 0.0002744 70 0.004382 156 Protein-protein interaction panel using mouse full-length cDNAs. www.ncbi.nlm.ni...
PMID 11829477 View Gene Set 0.0002741 13 0.004382 156 Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex. www.ncbi.nlm.ni...
PMID 12670868 View Gene Set 0.000287 21 0.004554 158 Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. www.ncbi.nlm.ni...
PMID 14733938 View Gene Set 0.0003128 13 0.004873 159 Protein-protein interactions among human 20S proteasome subunits and proteassemblin. www.ncbi.nlm.ni...
PMID 14760703 View Gene Set 0.0003129 40 0.004873 159 Proteomic identification of brain proteins that interact with dynein light chain LC8. www.ncbi.nlm.ni...
PMID 15949438 View Gene Set 0.0003106 11 0.004873 159 Binding of pRB to the PHD protein RBP2 promotes cellular differentiation. www.ncbi.nlm.ni...
PMID 7584044 View Gene Set 0.0003275 41 0.005068 162 Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. www.ncbi.nlm.ni...
PMID 11205743 View Gene Set 0.0003386 15 0.005175 163 Polo-like kinase interacts with proteasomes and regulates their activity. www.ncbi.nlm.ni...
PMID 19064571 View Gene Set 0.0003381 75 0.005175 163 Polymorphisms in mitochondrial genes and prostate cancer risk. www.ncbi.nlm.ni...
PMID 1574589 View Gene Set 0.0003501 11 0.00532 165 De novo purine nucleotide biosynthesis. www.ncbi.nlm.ni...
PMID 9545232 View Gene Set 0.0003565 10 0.005385 166 ER-60 a chaperone with thiol-dependent reductase activity involved in MHC class I assembly. www.ncbi.nlm.ni...
PMID 11721045 View Gene Set 0.0003676 10 0.005518 167 Crystal structure of Arp2/3 complex. www.ncbi.nlm.ni...
PMID 18954305 View Gene Set 0.0003774 13 0.005631 168 Structural basis and specificity of human otubain 1-mediated deubiquitination. www.ncbi.nlm.ni...
PMID 12234937 View Gene Set 0.0003868 34 0.005707 169 Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein. www.ncbi.nlm.ni...
PMID 14634002 View Gene Set 0.000387 12 0.005707 169 Selective contribution of eukaryotic prefoldin subunits to actin and tubulin binding. www.ncbi.nlm.ni...
PMID 16085932 View Gene Set 0.0003951 18 0.005793 171 A novel evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity. www.ncbi.nlm.ni...
PMID 11279123 View Gene Set 0.0004138 31 0.005996 172 The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. www.ncbi.nlm.ni...
PMID 19161160 View Gene Set 0.000413 49 0.005996 172 An association study of 45 folate-related genes in spina bifida: Involvement of cubilin (CUBN) and tRNA aspartic acid methyltransferase 1 (TRDMT1). www.ncbi.nlm.ni...
PMID 14743216 View Gene Set 0.000418 132 0.006022 174 A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. www.ncbi.nlm.ni...
PMID 12171929 View Gene Set 0.000424 31 0.006073 175 A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. www.ncbi.nlm.ni...
PMID 19110265 View Gene Set 0.0004675 24 0.006659 176 Proteomic analysis of dorsolateral prefrontal cortex indicates the involvement of cytoskeleton oligodendrocyte energy metabolism and new potential markers in schizophrenia. www.ncbi.nlm.ni...
PMID 10942595 View Gene Set 0.0004778 25 0.006756 177 A visual intracellular classification strategy for uncharacterized human proteins. www.ncbi.nlm.ni...
PMID 12493763 View Gene Set 0.0004797 18 0.006756 177 A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes. www.ncbi.nlm.ni...
PMID 12963728 View Gene Set 0.0004857 21 0.006802 179 Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex. www.ncbi.nlm.ni...
PMID 12421765 View Gene Set 0.0004944 119 0.006886 180 Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. www.ncbi.nlm.ni...
PMID 10078207 View Gene Set 0.0005027 10 0.006962 181 Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. www.ncbi.nlm.ni...
PMID 9731529 View Gene Set 0.0005305 24 0.007308 182 Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. www.ncbi.nlm.ni...
PMID 18782753 View Gene Set 0.0005465 45 0.007486 183 A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein. www.ncbi.nlm.ni...
PMID 14676191 View Gene Set 0.0005563 32 0.007579 184 Comprehensive proteomic analysis of human Par protein complexes reveals an interconnected protein network. www.ncbi.nlm.ni...
PMID 14532270 View Gene Set 0.0005661 12 0.00763 185 A product of the human gene adjacent to parkin is a component of Lewy bodies and suppresses Pael receptor-induced cell death. www.ncbi.nlm.ni...
PMID 8895581 View Gene Set 0.0005661 12 0.00763 185 Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. www.ncbi.nlm.ni...
PMID 10766737 View Gene Set 0.0006022 11 0.008049 187 Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression. www.ncbi.nlm.ni...
PMID 12433946 View Gene Set 0.0006036 10 0.008049 187 Interaction with 14-3-3 proteins promotes functional expression of the potassium channels TASK-1 and TASK-3. www.ncbi.nlm.ni...
PMID 9891079 View Gene Set 0.0006084 15 0.00807 189 Cyclin E associates with BAF155 and BRG1 components of the mammalian SWI-SNF complex and alters the ability of BRG1 to induce growth arrest. www.ncbi.nlm.ni...
PMID 11734557 View Gene Set 0.0006243 12 0.008194 190 SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones. www.ncbi.nlm.ni...
PMID 7811265 View Gene Set 0.0006212 16 0.008194 190 Human proteasome subunits from 2-dimensional gels identified by partial sequencing. www.ncbi.nlm.ni...
PMID 15050687 View Gene Set 0.0006485 11 0.008468 192 Proliferation inhibition of astrocytes neurons and non-glial cells by intracellularly expressed human immunodeficiency virus type 1 (HIV-1) Tat protein. www.ncbi.nlm.ni...
PMID 16526095 View Gene Set 0.0006601 23 0.008574 193 Modifications in the human T cell proteome induced by intracellular HIV-1 Tat protein expression. www.ncbi.nlm.ni...
PMID 15778465 View Gene Set 0.0006806 91 0.008795 194 Targeted proteomic analysis of 14-3-3 sigma a p53 effector commonly silenced in cancer. www.ncbi.nlm.ni...
PMID 10851237 View Gene Set 0.000743 11 0.009491 195 Specific sequences of the Sm and Sm-like (Lsm) proteins mediate their interaction with the spinal muscular atrophy disease gene product (SMN). www.ncbi.nlm.ni...
PMID 11713266 View Gene Set 0.0007458 12 0.009491 195 The methylosome a 20S complex containing JBP1 and pICln produces dimethylarginine-modified Sm proteins. www.ncbi.nlm.ni...
PMID 9222609 View Gene Set 0.000739 10 0.009491 195 A pathway of multi-chaperone interactions common to diverse regulatory proteins: estrogen receptor Fes tyrosine kinase heat shock transcription factor Hsf1 and the aryl hydrocarbon receptor. www.ncbi.nlm.ni...
PMID 17601350 View Gene Set 0.0007589 119 0.009561 198 A genetic association analysis of cognitive ability and cognitive ageing using 325 markers for 109 genes associated with oxidative stress or cognition. www.ncbi.nlm.ni...
PMID 9653160 View Gene Set 0.000758 36 0.009561 198 Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. www.ncbi.nlm.ni...
PMID 14519125 View Gene Set 0.0008209 12 0.01029 200 Characterization of eIF3k: a newly discovered subunit of mammalian translation initiation factor elF3. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr11_62.5-67.5Mb View Gene Set 5.205e-05 119 0.01068 1 Genomic tile: chr11 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr12_52.5-57.5Mb View Gene Set 6.42e-05 86 0.01068 1 Genomic tile: chr12 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr14_17.5-22.5Mb View Gene Set 1.496e-05 50 0.01068 1 Genomic tile: chr14 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr19_12.5-17.5Mb View Gene Set 2.072e-05 85 0.01068 1 Genomic tile: chr19 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr2_25-30Mb View Gene Set 6.711e-05 51 0.01068 1 Genomic tile: chr2 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr6_32.5-37.5Mb View Gene Set 3.021e-05 76 0.01068 1 Genomic tile: chr6 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr8_142.5-147.5Mb View Gene Set 6.352e-05 64 0.01068 1 Genomic tile: chr8 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr19_0-5Mb View Gene Set 0.0001102 105 0.01535 8 Genomic tile: chr19 ; 1-5000001 Mb genome.ucsc.edu...
Null chr14_102.5-107.5Mb View Gene Set 0.0002089 19 0.02328 9 Genomic tile: chr14 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr17_40-45Mb View Gene Set 0.0001946 92 0.02328 9 Genomic tile: chr17 ; 40000001-45000001 Mb genome.ucsc.edu...
Null chr11_0-5Mb View Gene Set 0.0005384 69 0.04341 11 Genomic tile: chr11 ; 1-5000001 Mb genome.ucsc.edu...
Null chr16_52.5-57.5Mb View Gene Set 0.0004396 38 0.04341 11 Genomic tile: chr16 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr19_10-15Mb View Gene Set 0.0005845 87 0.04341 11 Genomic tile: chr19 ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr1_150-155Mb View Gene Set 0.0005674 106 0.04341 11 Genomic tile: chr1 ; 150000001-155000001 Mb genome.ucsc.edu...
Null chr21_42.5-47.5Mb View Gene Set 0.0005482 49 0.04341 11 Genomic tile: chr21 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr14_20-25Mb View Gene Set 0.0006445 56 0.04487 16 Genomic tile: chr14 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr15_72.5-77.5Mb View Gene Set 0.0006928 55 0.0454 17 Genomic tile: chr15 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr16_27.5-32.5Mb View Gene Set 0.0008365 76 0.04945 18 Genomic tile: chr16 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr16_42.5-47.5Mb View Gene Set 0.0009322 8 0.04945 18 Genomic tile: chr16 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr19_2.5-7.5Mb View Gene Set 0.0009112 75 0.04945 18 Genomic tile: chr19 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr5_67.5-72.5Mb View Gene Set 0.0008926 16 0.04945 18 Genomic tile: chr5 ; 67500001-72500001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50102 View Gene Set 1.308e-13 229 9.613e-11 1 RRM expasy.org/pros...
Null PS00203 View Gene Set 2.932e-07 13 0.0001077 2 METALLOTHIONEIN_VRT expasy.org/pros...
Null PS50127 View Gene Set 4.265e-06 41 0.001045 3 UBIQUITIN_CONJUGAT_2 expasy.org/pros...
Null PS50166 View Gene Set 9.4e-05 13 0.01727 4 IMPORTIN_B_NT expasy.org/pros...
Null PS00194 View Gene Set 0.0003291 17 0.03047 5 THIOREDOXIN_1 expasy.org/pros...
Null PS00750 View Gene Set 0.0004974 9 0.03047 5 TCP1_1 expasy.org/pros...
Null PS00751 View Gene Set 0.0004974 9 0.03047 5 TCP1_2 expasy.org/pros...
Null PS00847 View Gene Set 0.0003162 6 0.03047 5 MCM_1 expasy.org/pros...
Null PS00995 View Gene Set 0.0004974 9 0.03047 5 TCP1_3 expasy.org/pros...
Null PS50200 View Gene Set 0.0003544 40 0.03047 5 RA expasy.org/pros...
Null PS51058 View Gene Set 0.0004192 11 0.03047 5 ZF_CXXC expasy.org/pros...
Null PS51352 View Gene Set 0.0002808 36 0.03047 5 THIOREDOXIN_2 expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:6.3.2.19 View Gene Set 4.652e-05 79 0.00735 1 Ubiquitin--protein ligase expasy.org/enzy...
Null EC:3.6.4.13 View Gene Set 0.0002611 13 0.02063 2 RNA helicase expasy.org/enzy...
Null EC:1.6.99.3 View Gene Set 0.0004039 35 0.02127 3 NADH dehydrogenase expasy.org/enzy...
Null EC:1.6.5.3 View Gene Set 0.0006138 43 0.02424 4 NADH dehydrogenase (ubiquinone) expasy.org/enzy...
Null EC:2.1.1.43 View Gene Set 0.001046 19 0.03306 5 Histone-lysine N-methyltransferase expasy.org/enzy...
Null EC:3.4.25.1 View Gene Set 0.001658 20 0.04367 6 Proteasome endopeptidase complex expasy.org/enzy...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.RB1 View Gene Set 0.0001089 44 0.02059 1 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.E2F1 View Gene Set 0.0006221 12 0.03919 2 Protein-protein-interaction for E2F1 www.ncbi.nlm.ni...
Null ppi.RBL2 View Gene Set 0.0004429 14 0.03919 2 Protein-protein-interaction for RBL2 www.ncbi.nlm.ni...
Null ppi.1491938 View Gene Set 0.0008299 25 0.03921 4 Protein-protein-interaction for 1491938 www.ncbi.nlm.ni...

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SRRM2 View Gene Set 4.444e-18 101 1.021e-14 1 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.132e-17 147 1.3e-14 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.155871 View Gene Set 3.578e-16 236 2.74e-13 3 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 1.051e-12 42 6.035e-10 4 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 7.521e-10 64 3.455e-07 5 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 1.355e-08 46 4.445e-06 6 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 1.33e-08 21 4.445e-06 6 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 4.309e-08 31 1.237e-05 8 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 5.607e-08 64 1.431e-05 9 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.TOPORS View Gene Set 1.426e-07 27 2.978e-05 10 Protein-protein-interaction for TOPORS www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 1.345e-07 53 2.978e-05 10 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 2.63e-07 37 5.035e-05 12 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.GSTK1 View Gene Set 4.828e-07 26 8.531e-05 13 Protein-protein-interaction for GSTK1 www.ncbi.nlm.ni...
Null ppi.GIYD2 View Gene Set 6.905e-07 32 0.0001133 14 Protein-protein-interaction for GIYD2 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.109e-06 168 0.0001698 15 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.EIF1B View Gene Set 2.147e-06 25 0.0002694 16 Protein-protein-interaction for EIF1B www.ncbi.nlm.ni...
Null ppi.RFWD2 View Gene Set 2.228e-06 26 0.0002694 16 Protein-protein-interaction for RFWD2 www.ncbi.nlm.ni...
Null ppi.HIST1H4A View Gene Set 2.096e-06 28 0.0002694 16 Protein-protein-interaction for HIST1H4A www.ncbi.nlm.ni...
Null ppi.EIF3F View Gene Set 2.104e-06 22 0.0002694 16 Protein-protein-interaction for EIF3F www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 3.583e-06 35 0.0003919 20 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.MTA2 View Gene Set 3.539e-06 25 0.0003919 20 Protein-protein-interaction for MTA2 www.ncbi.nlm.ni...
Null ppi.GPN1 View Gene Set 4.553e-06 27 0.0004753 22 Protein-protein-interaction for GPN1 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 4.881e-06 28 0.0004875 23 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.MBD2 View Gene Set 6.472e-06 11 0.0006194 24 Protein-protein-interaction for MBD2 www.ncbi.nlm.ni...
Null ppi.EGFR View Gene Set 1.144e-05 35 0.001036 25 Protein-protein-interaction for EGFR www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 1.173e-05 104 0.001036 25 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.MDM2 View Gene Set 1.278e-05 28 0.001048 27 Protein-protein-interaction for MDM2 www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 1.233e-05 50 0.001048 27 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.WDR5 View Gene Set 1.386e-05 23 0.001062 29 Protein-protein-interaction for WDR5 www.ncbi.nlm.ni...
Null ppi.BANF1 View Gene Set 1.373e-05 34 0.001062 29 Protein-protein-interaction for BANF1 www.ncbi.nlm.ni...
Null ppi.PINX1 View Gene Set 2.284e-05 19 0.001692 31 Protein-protein-interaction for PINX1 www.ncbi.nlm.ni...
Null ppi.MOBKL3 View Gene Set 2.737e-05 34 0.001964 32 Protein-protein-interaction for MOBKL3 www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 2.931e-05 38 0.00204 33 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 3.109e-05 38 0.0021 34 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 3.216e-05 35 0.002111 35 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.PABPC1 View Gene Set 3.388e-05 26 0.002162 36 Protein-protein-interaction for PABPC1 www.ncbi.nlm.ni...
Null ppi.PSMD6 View Gene Set 4.088e-05 21 0.002538 37 Protein-protein-interaction for PSMD6 www.ncbi.nlm.ni...
Null ppi.TH1L View Gene Set 4.5e-05 26 0.00272 38 Protein-protein-interaction for TH1L www.ncbi.nlm.ni...
Null ppi.DDA1 View Gene Set 5.117e-05 44 0.003014 39 Protein-protein-interaction for DDA1 www.ncbi.nlm.ni...
Null ppi.EED View Gene Set 6.023e-05 24 0.003459 40 Protein-protein-interaction for EED www.ncbi.nlm.ni...
Null ppi.CNBP View Gene Set 6.513e-05 17 0.003649 41 Protein-protein-interaction for CNBP www.ncbi.nlm.ni...
Null ppi.HABP4 View Gene Set 7.324e-05 16 0.003861 42 Protein-protein-interaction for HABP4 www.ncbi.nlm.ni...
Null ppi.PRMT1 View Gene Set 7.396e-05 15 0.003861 42 Protein-protein-interaction for PRMT1 www.ncbi.nlm.ni...
Null ppi.PAAF1 View Gene Set 7.152e-05 20 0.003861 42 Protein-protein-interaction for PAAF1 www.ncbi.nlm.ni...
Null ppi.SRPK2 View Gene Set 7.683e-05 7 0.003921 45 Protein-protein-interaction for SRPK2 www.ncbi.nlm.ni...
Null ppi.DDX20 View Gene Set 8.068e-05 17 0.004022 46 Protein-protein-interaction for DDX20 www.ncbi.nlm.ni...
Null ppi.MAPK6 View Gene Set 8.23e-05 6 0.004022 46 Protein-protein-interaction for MAPK6 www.ncbi.nlm.ni...
Null ppi.SETDB1 View Gene Set 8.41e-05 45 0.004025 48 Protein-protein-interaction for SETDB1 www.ncbi.nlm.ni...
Null ppi.HNRNPAB View Gene Set 8.782e-05 6 0.004117 49 Protein-protein-interaction for HNRNPAB www.ncbi.nlm.ni...
Null ppi.USP50 View Gene Set 9.682e-05 22 0.004427 50 Protein-protein-interaction for USP50 www.ncbi.nlm.ni...
Null ppi.CHFR View Gene Set 0.0001002 18 0.004427 50 Protein-protein-interaction for CHFR www.ncbi.nlm.ni...
Null ppi.PIAS2 View Gene Set 9.903e-05 24 0.004427 50 Protein-protein-interaction for PIAS2 www.ncbi.nlm.ni...
Null ppi.XPOT View Gene Set 0.0001151 6 0.004752 53 Protein-protein-interaction for XPOT www.ncbi.nlm.ni...
Null ppi.TRIB3 View Gene Set 0.0001099 24 0.004752 53 Protein-protein-interaction for TRIB3 www.ncbi.nlm.ni...
Null ppi.WNK1 View Gene Set 0.0001179 20 0.004752 53 Protein-protein-interaction for WNK1 www.ncbi.nlm.ni...
Null ppi.ZMYM2 View Gene Set 0.0001148 14 0.004752 53 Protein-protein-interaction for ZMYM2 www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 0.0001178 38 0.004752 53 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.HSPA4 View Gene Set 0.0001341 22 0.005311 58 Protein-protein-interaction for HSPA4 www.ncbi.nlm.ni...
Null ppi.XPO1 View Gene Set 0.0001554 24 0.006048 59 Protein-protein-interaction for XPO1 www.ncbi.nlm.ni...
Null ppi.PSMD13 View Gene Set 0.0001601 20 0.006128 60 Protein-protein-interaction for PSMD13 www.ncbi.nlm.ni...
Null ppi.SMARCA2 View Gene Set 0.0001697 29 0.00639 61 Protein-protein-interaction for SMARCA2 www.ncbi.nlm.ni...
Null ppi.U2AF2 View Gene Set 0.0001737 14 0.006435 62 Protein-protein-interaction for U2AF2 www.ncbi.nlm.ni...
Null ppi.HNRNPL View Gene Set 0.0001845 8 0.006635 63 Protein-protein-interaction for HNRNPL www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 0.0001911 46 0.006635 63 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.VHL View Gene Set 0.0001875 50 0.006635 63 Protein-protein-interaction for VHL www.ncbi.nlm.ni...
Null ppi.HIST2H2BE View Gene Set 0.000191 17 0.006635 63 Protein-protein-interaction for HIST2H2BE www.ncbi.nlm.ni...
Null ppi.EIF3A View Gene Set 0.0001935 12 0.006635 63 Protein-protein-interaction for EIF3A www.ncbi.nlm.ni...
Null ppi.CARM1 View Gene Set 0.000206 32 0.006856 68 Protein-protein-interaction for CARM1 www.ncbi.nlm.ni...
Null ppi.GEMIN4 View Gene Set 0.0002053 21 0.006856 68 Protein-protein-interaction for GEMIN4 www.ncbi.nlm.ni...
Null ppi.LARP1 View Gene Set 0.0002332 6 0.007621 70 Protein-protein-interaction for LARP1 www.ncbi.nlm.ni...
Null ppi.EIF3H View Gene Set 0.0002356 16 0.007621 70 Protein-protein-interaction for EIF3H www.ncbi.nlm.ni...
Null ppi.EEF1G View Gene Set 0.0002665 9 0.008382 72 Protein-protein-interaction for EEF1G www.ncbi.nlm.ni...
Null ppi.KIAA0368 View Gene Set 0.00027 6 0.008382 72 Protein-protein-interaction for KIAA0368 www.ncbi.nlm.ni...
Null ppi.IGSF21 View Gene Set 0.0002693 28 0.008382 72 Protein-protein-interaction for IGSF21 www.ncbi.nlm.ni...
Null ppi.HEATR2 View Gene Set 0.0002895 13 0.008642 75 Protein-protein-interaction for HEATR2 www.ncbi.nlm.ni...
Null ppi.PSTPIP1 View Gene Set 0.0002897 25 0.008642 75 Protein-protein-interaction for PSTPIP1 www.ncbi.nlm.ni...
Null ppi.USP14 View Gene Set 0.0002842 22 0.008642 75 Protein-protein-interaction for USP14 www.ncbi.nlm.ni...
Null ppi.IRS2 View Gene Set 0.0002983 18 0.008783 78 Protein-protein-interaction for IRS2 www.ncbi.nlm.ni...
Null ppi.DDX56 View Gene Set 0.0003062 20 0.008903 79 Protein-protein-interaction for DDX56 www.ncbi.nlm.ni...
Null ppi.CCDC53 View Gene Set 0.0003188 13 0.009154 80 Protein-protein-interaction for CCDC53 www.ncbi.nlm.ni...
Null ppi.GCN1L1 View Gene Set 0.0003298 15 0.009353 81 Protein-protein-interaction for GCN1L1 www.ncbi.nlm.ni...
Null ppi.ARFIP2 View Gene Set 0.0003435 9 0.009621 82 Protein-protein-interaction for ARFIP2 www.ncbi.nlm.ni...
Null ppi.ALL1 View Gene Set 0.000358 19 0.009826 83 Protein-protein-interaction for ALL1 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 0.0003722 95 0.009826 83 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.TAPBP View Gene Set 0.0003606 6 0.009826 83 Protein-protein-interaction for TAPBP www.ncbi.nlm.ni...
Null ppi.ZNRF1 View Gene Set 0.0003682 12 0.009826 83 Protein-protein-interaction for ZNRF1 www.ncbi.nlm.ni...
Null ppi.EIF3B View Gene Set 0.0003648 10 0.009826 83 Protein-protein-interaction for EIF3B www.ncbi.nlm.ni...
Null ppi.BRF2 View Gene Set 0.0003784 23 0.009876 88 Protein-protein-interaction for BRF2 www.ncbi.nlm.ni...
Null ppi.C20orf20 View Gene Set 0.0004009 15 0.01012 89 Protein-protein-interaction for C20orf20 www.ncbi.nlm.ni...
Null ppi.UBC View Gene Set 0.0003986 293 0.01012 89 Protein-protein-interaction for UBC www.ncbi.nlm.ni...
Null ppi.UBA5 View Gene Set 0.0003965 35 0.01012 89 Protein-protein-interaction for UBA5 www.ncbi.nlm.ni...
Null ppi.NUP54 View Gene Set 0.0004197 9 0.01048 92 Protein-protein-interaction for NUP54 www.ncbi.nlm.ni...
Null ppi.CBX1 View Gene Set 0.0004298 17 0.01054 93 Protein-protein-interaction for CBX1 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 0.0004314 15 0.01054 93 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.BCL7C View Gene Set 0.0004378 11 0.01058 95 Protein-protein-interaction for BCL7C www.ncbi.nlm.ni...
Null ppi.HNRNPR View Gene Set 0.0004429 9 0.0106 96 Protein-protein-interaction for HNRNPR www.ncbi.nlm.ni...
Null ppi.STRN3 View Gene Set 0.0004503 22 0.01066 97 Protein-protein-interaction for STRN3 www.ncbi.nlm.ni...
Null ppi.RCOR1 View Gene Set 0.0004601 21 0.01078 98 Protein-protein-interaction for RCOR1 www.ncbi.nlm.ni...
Null ppi.UBAC1 View Gene Set 0.0004764 9 0.01098 99 Protein-protein-interaction for UBAC1 www.ncbi.nlm.ni...
Null ppi.NFKBIA View Gene Set 0.0004782 12 0.01098 99 Protein-protein-interaction for NFKBIA www.ncbi.nlm.ni...
Null ppi.FBXW11 View Gene Set 0.0004848 25 0.01103 101 Protein-protein-interaction for FBXW11 www.ncbi.nlm.ni...
Null ppi.XPO5 View Gene Set 0.0004957 11 0.01116 102 Protein-protein-interaction for XPO5 www.ncbi.nlm.ni...
Null ppi.PPP4C View Gene Set 0.0005058 8 0.01128 103 Protein-protein-interaction for PPP4C www.ncbi.nlm.ni...
Null ppi.C20orf94 View Gene Set 0.0005184 15 0.01145 104 Protein-protein-interaction for C20orf94 www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.0005601 17 0.01184 105 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.PDCD4 View Gene Set 0.0005617 10 0.01184 105 Protein-protein-interaction for PDCD4 www.ncbi.nlm.ni...
Null ppi.PA2G4 View Gene Set 0.0005559 7 0.01184 105 Protein-protein-interaction for PA2G4 www.ncbi.nlm.ni...
Null ppi.XRN1 View Gene Set 0.0005521 12 0.01184 105 Protein-protein-interaction for XRN1 www.ncbi.nlm.ni...
Null ppi.64196 View Gene Set 0.0005445 6 0.01184 105 Protein-protein-interaction for 64196 www.ncbi.nlm.ni...
Null ppi.LSM1 View Gene Set 0.0005988 13 0.01228 110 Protein-protein-interaction for LSM1 www.ncbi.nlm.ni...
Null ppi.GAR1 View Gene Set 0.0005982 9 0.01228 110 Protein-protein-interaction for GAR1 www.ncbi.nlm.ni...
Null ppi.BCL11B View Gene Set 0.000594 12 0.01228 110 Protein-protein-interaction for BCL11B www.ncbi.nlm.ni...
Null ppi.HDAC6 View Gene Set 0.0006116 38 0.01243 113 Protein-protein-interaction for HDAC6 www.ncbi.nlm.ni...
Null ppi.EHMT1 View Gene Set 0.0006351 8 0.0128 114 Protein-protein-interaction for EHMT1 www.ncbi.nlm.ni...
Null ppi.LYAR View Gene Set 0.000666 26 0.01308 115 Protein-protein-interaction for LYAR www.ncbi.nlm.ni...
Null ppi.MKRN3 View Gene Set 0.0006668 14 0.01308 115 Protein-protein-interaction for MKRN3 www.ncbi.nlm.ni...
Null ppi.YTHDC1 View Gene Set 0.0006629 7 0.01308 115 Protein-protein-interaction for YTHDC1 www.ncbi.nlm.ni...
Null ppi.RPL23 View Gene Set 0.000672 6 0.01308 115 Protein-protein-interaction for RPL23 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 0.0006812 11 0.01315 119 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.COPG View Gene Set 0.0007077 17 0.01341 120 Protein-protein-interaction for COPG www.ncbi.nlm.ni...
Null ppi.RNF125 View Gene Set 0.000718 11 0.01341 120 Protein-protein-interaction for RNF125 www.ncbi.nlm.ni...
Null ppi.ASF1B View Gene Set 0.0007138 23 0.01341 120 Protein-protein-interaction for ASF1B www.ncbi.nlm.ni...
Null ppi.RAC1 View Gene Set 0.0007127 28 0.01341 120 Protein-protein-interaction for RAC1 www.ncbi.nlm.ni...
Null ppi.RNF167 View Gene Set 0.0007622 8 0.01385 124 Protein-protein-interaction for RNF167 www.ncbi.nlm.ni...
Null ppi.RAB8B View Gene Set 0.0007645 13 0.01385 124 Protein-protein-interaction for RAB8B www.ncbi.nlm.ni...
Null ppi.WDR48 View Gene Set 0.0007571 52 0.01385 124 Protein-protein-interaction for WDR48 www.ncbi.nlm.ni...
Null ppi.CCNA1 View Gene Set 0.0007655 22 0.01385 124 Protein-protein-interaction for CCNA1 www.ncbi.nlm.ni...
Null ppi.SUPT16H View Gene Set 0.0007827 11 0.01394 128 Protein-protein-interaction for SUPT16H www.ncbi.nlm.ni...
Null ppi.FAF2 View Gene Set 0.0007815 7 0.01394 128 Protein-protein-interaction for FAF2 www.ncbi.nlm.ni...
Null ppi.DPY30 View Gene Set 0.0008145 9 0.01428 130 Protein-protein-interaction for DPY30 www.ncbi.nlm.ni...
Null ppi.EIF3J View Gene Set 0.0008142 8 0.01428 130 Protein-protein-interaction for EIF3J www.ncbi.nlm.ni...
Null ppi.PTP4A2 View Gene Set 0.0008351 6 0.01453 132 Protein-protein-interaction for PTP4A2 www.ncbi.nlm.ni...
Null ppi.SAP25 View Gene Set 0.0008464 29 0.01462 133 Protein-protein-interaction for SAP25 www.ncbi.nlm.ni...
Null ppi.PSMD10 View Gene Set 0.0008695 14 0.0149 134 Protein-protein-interaction for PSMD10 www.ncbi.nlm.ni...
Null ppi.HSPA8 View Gene Set 0.0008944 21 0.01522 135 Protein-protein-interaction for HSPA8 www.ncbi.nlm.ni...
Null ppi.MPRIP View Gene Set 0.0009244 6 0.01561 136 Protein-protein-interaction for MPRIP www.ncbi.nlm.ni...
Null ppi.PSMD14 View Gene Set 0.00097 16 0.01569 137 Protein-protein-interaction for PSMD14 www.ncbi.nlm.ni...
Null ppi.TMBIM4 View Gene Set 0.0009644 9 0.01569 137 Protein-protein-interaction for TMBIM4 www.ncbi.nlm.ni...
Null ppi.CAND1 View Gene Set 0.0009697 11 0.01569 137 Protein-protein-interaction for CAND1 www.ncbi.nlm.ni...
Null ppi.SLC2A1 View Gene Set 0.0009577 6 0.01569 137 Protein-protein-interaction for SLC2A1 www.ncbi.nlm.ni...
Null ppi.SIP1 View Gene Set 0.0009666 6 0.01569 137 Protein-protein-interaction for SIP1 www.ncbi.nlm.ni...
Null ppi.CDYL View Gene Set 0.0009593 8 0.01569 137 Protein-protein-interaction for CDYL www.ncbi.nlm.ni...
Null ppi.SCMH1 View Gene Set 0.001006 7 0.01581 143 Protein-protein-interaction for SCMH1 www.ncbi.nlm.ni...
Null ppi.MAPT View Gene Set 0.0009932 7 0.01581 143 Protein-protein-interaction for MAPT www.ncbi.nlm.ni...
Null ppi.NPDC1 View Gene Set 0.001019 11 0.01581 143 Protein-protein-interaction for NPDC1 www.ncbi.nlm.ni...
Null ppi.KIAA1377 View Gene Set 0.001019 57 0.01581 143 Protein-protein-interaction for KIAA1377 www.ncbi.nlm.ni...
Null ppi.UBE2I View Gene Set 0.001002 62 0.01581 143 Protein-protein-interaction for UBE2I www.ncbi.nlm.ni...
Null ppi.TRIM5 View Gene Set 0.0009914 14 0.01581 143 Protein-protein-interaction for TRIM5 www.ncbi.nlm.ni...
Null ppi.STK24 View Gene Set 0.00104 16 0.01603 149 Protein-protein-interaction for STK24 www.ncbi.nlm.ni...
Null ppi.RGS20 View Gene Set 0.001047 8 0.01603 149 Protein-protein-interaction for RGS20 www.ncbi.nlm.ni...
Null ppi.HDAC2 View Gene Set 0.001095 34 0.01655 151 Protein-protein-interaction for HDAC2 www.ncbi.nlm.ni...
Null ppi.USP36 View Gene Set 0.001095 17 0.01655 151 Protein-protein-interaction for USP36 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 0.001117 9 0.01676 153 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.TGIF1 View Gene Set 0.001128 10 0.01683 154 Protein-protein-interaction for TGIF1 www.ncbi.nlm.ni...
Null ppi.BCL2L11 View Gene Set 0.001156 12 0.01713 155 Protein-protein-interaction for BCL2L11 www.ncbi.nlm.ni...
Null ppi.MBD3L2 View Gene Set 0.001164 11 0.01714 156 Protein-protein-interaction for MBD3L2 www.ncbi.nlm.ni...
Null ppi.NEDD4L View Gene Set 0.001223 11 0.0179 157 Protein-protein-interaction for NEDD4L www.ncbi.nlm.ni...
Null ppi.IKBKE View Gene Set 0.00125 19 0.01818 158 Protein-protein-interaction for IKBKE www.ncbi.nlm.ni...
Null ppi.KDELR1 View Gene Set 0.001259 5 0.01819 159 Protein-protein-interaction for KDELR1 www.ncbi.nlm.ni...
Null ppi.LRPPRC View Gene Set 0.00129 11 0.01845 160 Protein-protein-interaction for LRPPRC www.ncbi.nlm.ni...
Null ppi.HIST1H3A View Gene Set 0.001293 30 0.01845 160 Protein-protein-interaction for HIST1H3A www.ncbi.nlm.ni...
Null ppi.HUWE1 View Gene Set 0.001319 8 0.0187 162 Protein-protein-interaction for HUWE1 www.ncbi.nlm.ni...
Null ppi.PTBP1 View Gene Set 0.001343 5 0.01893 163 Protein-protein-interaction for PTBP1 www.ncbi.nlm.ni...
Null ppi.USP19 View Gene Set 0.001365 17 0.01912 164 Protein-protein-interaction for USP19 www.ncbi.nlm.ni...
Null ppi.OTUB1 View Gene Set 0.001429 18 0.01978 165 Protein-protein-interaction for OTUB1 www.ncbi.nlm.ni...
Null ppi.CUL4A View Gene Set 0.001429 19 0.01978 165 Protein-protein-interaction for CUL4A www.ncbi.nlm.ni...
Null ppi.SMARCA4 View Gene Set 0.001457 59 0.02005 167 Protein-protein-interaction for SMARCA4 www.ncbi.nlm.ni...
Null ppi.SIRT1 View Gene Set 0.001513 37 0.02057 168 Protein-protein-interaction for SIRT1 www.ncbi.nlm.ni...
Null ppi.64015 View Gene Set 0.001509 6 0.02057 168 Protein-protein-interaction for 64015 www.ncbi.nlm.ni...
Null ppi.ABTB2 View Gene Set 0.001568 6 0.02103 170 Protein-protein-interaction for ABTB2 www.ncbi.nlm.ni...
Null ppi.UBQLN4 View Gene Set 0.001575 19 0.02103 170 Protein-protein-interaction for UBQLN4 www.ncbi.nlm.ni...
Null ppi.USP3 View Gene Set 0.001567 15 0.02103 170 Protein-protein-interaction for USP3 www.ncbi.nlm.ni...
Null ppi.DZIP3 View Gene Set 0.001598 18 0.02122 173 Protein-protein-interaction for DZIP3 www.ncbi.nlm.ni...
Null ppi.HNRNPH1 View Gene Set 0.001639 9 0.02139 174 Protein-protein-interaction for HNRNPH1 www.ncbi.nlm.ni...
Null ppi.RPL5 View Gene Set 0.001627 6 0.02139 174 Protein-protein-interaction for RPL5 www.ncbi.nlm.ni...
Null ppi.TRIO View Gene Set 0.001636 6 0.02139 174 Protein-protein-interaction for TRIO www.ncbi.nlm.ni...
Null ppi.CDCA5 View Gene Set 0.001658 6 0.02151 177 Protein-protein-interaction for CDCA5 www.ncbi.nlm.ni...
Null ppi.HDAC5 View Gene Set 0.001751 52 0.02198 178 Protein-protein-interaction for HDAC5 www.ncbi.nlm.ni...
Null ppi.CD2BP2 View Gene Set 0.001718 13 0.02198 178 Protein-protein-interaction for CD2BP2 www.ncbi.nlm.ni...
Null ppi.CYCS View Gene Set 0.001742 10 0.02198 178 Protein-protein-interaction for CYCS www.ncbi.nlm.ni...
Null ppi.NUP93 View Gene Set 0.001733 8 0.02198 178 Protein-protein-interaction for NUP93 www.ncbi.nlm.ni...
Null ppi.HDAC4 View Gene Set 0.00173 78 0.02198 178 Protein-protein-interaction for HDAC4 www.ncbi.nlm.ni...
Null ppi.KEAP1 View Gene Set 0.001746 21 0.02198 178 Protein-protein-interaction for KEAP1 www.ncbi.nlm.ni...
Null ppi.PPID View Gene Set 0.001774 7 0.02214 184 Protein-protein-interaction for PPID www.ncbi.nlm.ni...
Null ppi.IMMT View Gene Set 0.001808 15 0.02227 185 Protein-protein-interaction for IMMT www.ncbi.nlm.ni...
Null ppi.EZH2 View Gene Set 0.001813 11 0.02227 185 Protein-protein-interaction for EZH2 www.ncbi.nlm.ni...
Null ppi.HAP1 View Gene Set 0.001807 23 0.02227 185 Protein-protein-interaction for HAP1 www.ncbi.nlm.ni...
Null ppi.SH3GL3 View Gene Set 0.001843 10 0.02252 188 Protein-protein-interaction for SH3GL3 www.ncbi.nlm.ni...
Null ppi.MAPKAPK5 View Gene Set 0.001858 6 0.02258 189 Protein-protein-interaction for MAPKAPK5 www.ncbi.nlm.ni...
Null ppi.GORASP1 View Gene Set 0.001869 6 0.02259 190 Protein-protein-interaction for GORASP1 www.ncbi.nlm.ni...
Null ppi.DLEU1 View Gene Set 0.001908 10 0.02262 191 Protein-protein-interaction for DLEU1 www.ncbi.nlm.ni...
Null ppi.UHRF2 View Gene Set 0.00191 9 0.02262 191 Protein-protein-interaction for UHRF2 www.ncbi.nlm.ni...
Null ppi.USP49 View Gene Set 0.001904 24 0.02262 191 Protein-protein-interaction for USP49 www.ncbi.nlm.ni...
Null ppi.CCDC106 View Gene Set 0.00191 10 0.02262 191 Protein-protein-interaction for CCDC106 www.ncbi.nlm.ni...
Null ppi.CCT7 View Gene Set 0.00195 14 0.02297 195 Protein-protein-interaction for CCT7 www.ncbi.nlm.ni...
Null ppi.NEK6 View Gene Set 0.001979 10 0.02319 196 Protein-protein-interaction for NEK6 www.ncbi.nlm.ni...
Null ppi.PGAM5 View Gene Set 0.002017 13 0.02352 197 Protein-protein-interaction for PGAM5 www.ncbi.nlm.ni...
Null ppi.ILK View Gene Set 0.002039 7 0.02365 198 Protein-protein-interaction for ILK www.ncbi.nlm.ni...
Null ppi.ROCK1 View Gene Set 0.002069 9 0.02388 199 Protein-protein-interaction for ROCK1 www.ncbi.nlm.ni...
Null ppi.TUBA1B View Gene Set 0.002103 9 0.02408 200 Protein-protein-interaction for TUBA1B www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SFRS12 View Gene Set 3.272e-14 49 6.634e-11 1 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 5.589e-14 76 6.634e-11 1 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.NDRG1 View Gene Set 2.695e-13 58 2.133e-10 3 Protein-protein-interaction for NDRG1 www.ncbi.nlm.ni...
Null ppi.YWHAG View Gene Set 2.304e-08 106 1.368e-05 4 Protein-protein-interaction for YWHAG www.ncbi.nlm.ni...
Null ppi.PABPC1 View Gene Set 4.132e-08 21 1.962e-05 5 Protein-protein-interaction for PABPC1 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 1.792e-06 20 0.0007089 6 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.SETDB1 View Gene Set 8.613e-06 43 0.002921 7 Protein-protein-interaction for SETDB1 www.ncbi.nlm.ni...
Null ppi.TUBB View Gene Set 1.55e-05 43 0.0046 8 Protein-protein-interaction for TUBB www.ncbi.nlm.ni...
Null ppi.U2AF2 View Gene Set 2.942e-05 18 0.00738 9 Protein-protein-interaction for U2AF2 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 3.109e-05 92 0.00738 9 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 4.279e-05 166 0.009235 11 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.UPF2 View Gene Set 9.693e-05 16 0.01394 12 Protein-protein-interaction for UPF2 www.ncbi.nlm.ni...
Null ppi.PRMT1 View Gene Set 9.617e-05 13 0.01394 12 Protein-protein-interaction for PRMT1 www.ncbi.nlm.ni...
Null ppi.PCBP2 View Gene Set 9.985e-05 7 0.01394 12 Protein-protein-interaction for PCBP2 www.ncbi.nlm.ni...
Null ppi.SRPK1 View Gene Set 9.362e-05 12 0.01394 12 Protein-protein-interaction for SRPK1 www.ncbi.nlm.ni...
Null ppi.IGSF21 View Gene Set 8.468e-05 29 0.01394 12 Protein-protein-interaction for IGSF21 www.ncbi.nlm.ni...
Null ppi.EIF3J View Gene Set 9.661e-05 8 0.01394 12 Protein-protein-interaction for EIF3J www.ncbi.nlm.ni...
Null ppi.SGOL1 View Gene Set 0.0001109 20 0.01462 18 Protein-protein-interaction for SGOL1 www.ncbi.nlm.ni...
Null ppi.NUP54 View Gene Set 0.0001187 6 0.01484 19 Protein-protein-interaction for NUP54 www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 0.0001609 55 0.01736 20 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.SH3GL3 View Gene Set 0.0001531 13 0.01736 20 Protein-protein-interaction for SH3GL3 www.ncbi.nlm.ni...
Null ppi.TAPBP View Gene Set 0.0001578 7 0.01736 20 Protein-protein-interaction for TAPBP www.ncbi.nlm.ni...
Null ppi.RAC1 View Gene Set 0.0001941 44 0.0185 23 Protein-protein-interaction for RAC1 www.ncbi.nlm.ni...
Null ppi.SIP1 View Gene Set 0.0001805 13 0.0185 23 Protein-protein-interaction for SIP1 www.ncbi.nlm.ni...
Null ppi.CCNA1 View Gene Set 0.0001948 17 0.0185 23 Protein-protein-interaction for CCNA1 www.ncbi.nlm.ni...
Null ppi.C20orf20 View Gene Set 0.0002041 10 0.01863 26 Protein-protein-interaction for C20orf20 www.ncbi.nlm.ni...
Null ppi.TCF4 View Gene Set 0.0002163 18 0.01902 27 Protein-protein-interaction for TCF4 www.ncbi.nlm.ni...
Null ppi.IPO7 View Gene Set 0.0002411 8 0.02044 28 Protein-protein-interaction for IPO7 www.ncbi.nlm.ni...
Null ppi.MYOC View Gene Set 0.0002684 25 0.02197 29 Protein-protein-interaction for MYOC www.ncbi.nlm.ni...
Null ppi.HIST2H3C View Gene Set 0.000388 7 0.02282 30 Protein-protein-interaction for HIST2H3C www.ncbi.nlm.ni...
Null ppi.HABP4 View Gene Set 0.0003941 21 0.02282 30 Protein-protein-interaction for HABP4 www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 0.0003554 47 0.02282 30 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.LSM1 View Gene Set 0.0003736 16 0.02282 30 Protein-protein-interaction for LSM1 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 0.0003119 11 0.02282 30 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.CCDC53 View Gene Set 0.0003188 13 0.02282 30 Protein-protein-interaction for CCDC53 www.ncbi.nlm.ni...
Null ppi.XRN1 View Gene Set 0.0003355 24 0.02282 30 Protein-protein-interaction for XRN1 www.ncbi.nlm.ni...
Null ppi.PPP2R1B View Gene Set 0.0002982 13 0.02282 30 Protein-protein-interaction for PPP2R1B www.ncbi.nlm.ni...
Null ppi.KIAA1377 View Gene Set 0.0003885 62 0.02282 30 Protein-protein-interaction for KIAA1377 www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 0.0003754 77 0.02282 30 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.STAU1 View Gene Set 0.0003313 20 0.02282 30 Protein-protein-interaction for STAU1 www.ncbi.nlm.ni...
Null ppi.DYNLL1 View Gene Set 0.0003769 48 0.02282 30 Protein-protein-interaction for DYNLL1 www.ncbi.nlm.ni...
Null ppi.ACTR3 View Gene Set 0.0005095 7 0.02535 42 Protein-protein-interaction for ACTR3 www.ncbi.nlm.ni...
Null ppi.DDX20 View Gene Set 0.0004969 20 0.02535 42 Protein-protein-interaction for DDX20 www.ncbi.nlm.ni...
Null ppi.ESR1 View Gene Set 0.0004952 31 0.02535 42 Protein-protein-interaction for ESR1 www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 0.0005361 9 0.02535 42 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.HNRNPL View Gene Set 0.0004785 6 0.02535 42 Protein-protein-interaction for HNRNPL www.ncbi.nlm.ni...
Null ppi.STMN1 View Gene Set 0.0005359 6 0.02535 42 Protein-protein-interaction for STMN1 www.ncbi.nlm.ni...
Null ppi.TH1L View Gene Set 0.0005772 12 0.02535 42 Protein-protein-interaction for TH1L www.ncbi.nlm.ni...
Null ppi.EXOSC4 View Gene Set 0.0004609 21 0.02535 42 Protein-protein-interaction for EXOSC4 www.ncbi.nlm.ni...
Null ppi.EXOSC5 View Gene Set 0.0005401 18 0.02535 42 Protein-protein-interaction for EXOSC5 www.ncbi.nlm.ni...
Null ppi.SHBG View Gene Set 0.0005584 24 0.02535 42 Protein-protein-interaction for SHBG www.ncbi.nlm.ni...
Null ppi.SLC2A1 View Gene Set 0.0004548 7 0.02535 42 Protein-protein-interaction for SLC2A1 www.ncbi.nlm.ni...
Null ppi.VHL View Gene Set 0.0005873 13 0.02535 42 Protein-protein-interaction for VHL www.ncbi.nlm.ni...
Null ppi.YWHAE View Gene Set 0.0005748 45 0.02535 42 Protein-protein-interaction for YWHAE www.ncbi.nlm.ni...
Null ppi.YTHDC1 View Gene Set 0.0005517 11 0.02535 42 Protein-protein-interaction for YTHDC1 www.ncbi.nlm.ni...
Null ppi.IRS2 View Gene Set 0.0006031 33 0.02557 56 Protein-protein-interaction for IRS2 www.ncbi.nlm.ni...
Null ppi.HAP1 View Gene Set 0.0006265 30 0.02609 57 Protein-protein-interaction for HAP1 www.ncbi.nlm.ni...
Null ppi.ZMYM2 View Gene Set 0.0006565 12 0.02687 58 Protein-protein-interaction for ZMYM2 www.ncbi.nlm.ni...
Null ppi.KIF1B View Gene Set 0.0007089 12 0.02776 59 Protein-protein-interaction for KIF1B www.ncbi.nlm.ni...
Null ppi.RPL5 View Gene Set 0.0007024 10 0.02776 59 Protein-protein-interaction for RPL5 www.ncbi.nlm.ni...
Null ppi.GORASP1 View Gene Set 0.0007134 9 0.02776 59 Protein-protein-interaction for GORASP1 www.ncbi.nlm.ni...
Null ppi.EEF1G View Gene Set 0.0007444 10 0.02781 62 Protein-protein-interaction for EEF1G www.ncbi.nlm.ni...
Null ppi.PSMA7 View Gene Set 0.0007943 10 0.02781 62 Protein-protein-interaction for PSMA7 www.ncbi.nlm.ni...
Null ppi.UBQLN4 View Gene Set 0.00078 115 0.02781 62 Protein-protein-interaction for UBQLN4 www.ncbi.nlm.ni...
Null ppi.TRIO View Gene Set 0.0007803 7 0.02781 62 Protein-protein-interaction for TRIO www.ncbi.nlm.ni...
Null ppi.TSC1 View Gene Set 0.0007966 9 0.02781 62 Protein-protein-interaction for TSC1 www.ncbi.nlm.ni...
Null ppi.YWHAZ View Gene Set 0.0007757 85 0.02781 62 Protein-protein-interaction for YWHAZ www.ncbi.nlm.ni...
Null ppi.C7orf64 View Gene Set 0.0007741 44 0.02781 62 Protein-protein-interaction for C7orf64 www.ncbi.nlm.ni...
Null ppi.HDHD2 View Gene Set 0.0008204 12 0.02823 69 Protein-protein-interaction for HDHD2 www.ncbi.nlm.ni...
Null ppi.ORC2L View Gene Set 0.0008618 11 0.02923 70 Protein-protein-interaction for ORC2L www.ncbi.nlm.ni...
Null ppi.EIF3I View Gene Set 0.0008886 7 0.02971 71 Protein-protein-interaction for EIF3I www.ncbi.nlm.ni...
Null ppi.PGR View Gene Set 0.0009153 9 0.02994 72 Protein-protein-interaction for PGR www.ncbi.nlm.ni...
Null ppi.ASAP2 View Gene Set 0.0009207 8 0.02994 72 Protein-protein-interaction for ASAP2 www.ncbi.nlm.ni...
Null ppi.NUP50 View Gene Set 0.000947 6 0.03038 74 Protein-protein-interaction for NUP50 www.ncbi.nlm.ni...
Null ppi.MYF6 View Gene Set 0.001126 6 0.03564 75 Protein-protein-interaction for MYF6 www.ncbi.nlm.ni...
Null ppi.GSN View Gene Set 0.001142 12 0.03568 76 Protein-protein-interaction for GSN www.ncbi.nlm.ni...
Null ppi.EED View Gene Set 0.001162 14 0.03583 77 Protein-protein-interaction for EED www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.00124 17 0.03774 78 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.KAT5 View Gene Set 0.001288 55 0.03814 79 Protein-protein-interaction for KAT5 www.ncbi.nlm.ni...
Null ppi.XRN2 View Gene Set 0.001398 9 0.03814 79 Protein-protein-interaction for XRN2 www.ncbi.nlm.ni...
Null ppi.ITPR1 View Gene Set 0.001334 11 0.03814 79 Protein-protein-interaction for ITPR1 www.ncbi.nlm.ni...
Null ppi.PTBP1 View Gene Set 0.001359 7 0.03814 79 Protein-protein-interaction for PTBP1 www.ncbi.nlm.ni...
Null ppi.PTPRF View Gene Set 0.001387 12 0.03814 79 Protein-protein-interaction for PTPRF www.ncbi.nlm.ni...
Null ppi.KCNK15 View Gene Set 0.001392 8 0.03814 79 Protein-protein-interaction for KCNK15 www.ncbi.nlm.ni...
Null ppi.YY1 View Gene Set 0.001291 13 0.03814 79 Protein-protein-interaction for YY1 www.ncbi.nlm.ni...
Null ppi.BAT2 View Gene Set 0.001305 16 0.03814 79 Protein-protein-interaction for BAT2 www.ncbi.nlm.ni...
Null ppi.COPS3 View Gene Set 0.001383 9 0.03814 79 Protein-protein-interaction for COPS3 www.ncbi.nlm.ni...
Null ppi.TUBA1B View Gene Set 0.001418 14 0.03827 88 Protein-protein-interaction for TUBA1B www.ncbi.nlm.ni...
Null ppi.CAPN1 View Gene Set 0.001482 6 0.03954 89 Protein-protein-interaction for CAPN1 www.ncbi.nlm.ni...
Null ppi.MYBBP1A View Gene Set 0.001536 6 0.04036 90 Protein-protein-interaction for MYBBP1A www.ncbi.nlm.ni...
Null ppi.MBP View Gene Set 0.001598 8 0.04036 90 Protein-protein-interaction for MBP www.ncbi.nlm.ni...
Null ppi.SLC2A4 View Gene Set 0.001577 20 0.04036 90 Protein-protein-interaction for SLC2A4 www.ncbi.nlm.ni...
Null ppi.EZR View Gene Set 0.001553 37 0.04036 90 Protein-protein-interaction for EZR www.ncbi.nlm.ni...
Null ppi.CAV1 View Gene Set 0.001584 9 0.04036 90 Protein-protein-interaction for CAV1 www.ncbi.nlm.ni...
Null ppi.EIF2AK2 View Gene Set 0.001635 20 0.04085 95 Protein-protein-interaction for EIF2AK2 www.ncbi.nlm.ni...
Null ppi.MOBKL3 View Gene Set 0.001739 21 0.04255 96 Protein-protein-interaction for MOBKL3 www.ncbi.nlm.ni...
Null ppi.PCNA View Gene Set 0.001732 33 0.04255 96 Protein-protein-interaction for PCNA www.ncbi.nlm.ni...
Null ppi.BCL2L11 View Gene Set 0.001968 13 0.04551 98 Protein-protein-interaction for BCL2L11 www.ncbi.nlm.ni...
Null ppi.GNB2L1 View Gene Set 0.001899 47 0.04551 98 Protein-protein-interaction for GNB2L1 www.ncbi.nlm.ni...
Null ppi.ITGB3BP View Gene Set 0.00196 10 0.04551 98 Protein-protein-interaction for ITGB3BP www.ncbi.nlm.ni...
Null ppi.CCDC106 View Gene Set 0.00191 10 0.04551 98 Protein-protein-interaction for CCDC106 www.ncbi.nlm.ni...
Null ppi.A2BP1 View Gene Set 0.001975 17 0.04551 98 Protein-protein-interaction for A2BP1 www.ncbi.nlm.ni...
Null ppi.TJP2 View Gene Set 0.001927 9 0.04551 98 Protein-protein-interaction for TJP2 www.ncbi.nlm.ni...
Null ppi.SF3B1 View Gene Set 0.002021 9 0.04613 104 Protein-protein-interaction for SF3B1 www.ncbi.nlm.ni...
Null ppi.CFL1 View Gene Set 0.002118 7 0.04631 105 Protein-protein-interaction for CFL1 www.ncbi.nlm.ni...
Null ppi.GADD45G View Gene Set 0.00218 24 0.04631 105 Protein-protein-interaction for GADD45G www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 0.002093 11 0.04631 105 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.DEF6 View Gene Set 0.002204 7 0.04631 105 Protein-protein-interaction for DEF6 www.ncbi.nlm.ni...
Null ppi.PRNP View Gene Set 0.002181 25 0.04631 105 Protein-protein-interaction for PRNP www.ncbi.nlm.ni...
Null ppi.RBP1 View Gene Set 0.002095 7 0.04631 105 Protein-protein-interaction for RBP1 www.ncbi.nlm.ni...
Null ppi.FSCN1 View Gene Set 0.002192 9 0.04631 105 Protein-protein-interaction for FSCN1 www.ncbi.nlm.ni...
Null ppi.UBE2A View Gene Set 0.002195 6 0.04631 105 Protein-protein-interaction for UBE2A www.ncbi.nlm.ni...
Null ppi.NR1H4 View Gene Set 0.002087 9 0.04631 105 Protein-protein-interaction for NR1H4 www.ncbi.nlm.ni...
Null ppi.KCNK9 View Gene Set 0.002275 8 0.04738 114 Protein-protein-interaction for KCNK9 www.ncbi.nlm.ni...
Null ppi.PLD2 View Gene Set 0.00232 20 0.0479 115 Protein-protein-interaction for PLD2 www.ncbi.nlm.ni...
Null ppi.PBK View Gene Set 0.002407 11 0.04926 116 Protein-protein-interaction for PBK www.ncbi.nlm.ni...

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.SRRM2 View Gene Set 4.444e-18 101 1.597e-14 1 Protein-protein-interaction for SRRM2 www.ncbi.nlm.ni...
Null ppi.MEPCE View Gene Set 1.132e-17 147 2.035e-14 2 Protein-protein-interaction for MEPCE www.ncbi.nlm.ni...
Null ppi.155871 View Gene Set 1.88e-17 251 2.252e-14 3 Protein-protein-interaction for 155871 www.ncbi.nlm.ni...
Null ppi.SFRS12 View Gene Set 1.331e-14 50 1.196e-11 4 Protein-protein-interaction for SFRS12 www.ncbi.nlm.ni...
Null ppi.SUMO4 View Gene Set 5.589e-14 76 4.017e-11 5 Protein-protein-interaction for SUMO4 www.ncbi.nlm.ni...
Null ppi.NDRG1 View Gene Set 2.695e-13 58 1.614e-10 6 Protein-protein-interaction for NDRG1 www.ncbi.nlm.ni...
Null ppi.72462 View Gene Set 1.051e-12 42 5.396e-10 7 Protein-protein-interaction for 72462 www.ncbi.nlm.ni...
Null ppi.SRRM1 View Gene Set 4.214e-10 66 1.893e-07 8 Protein-protein-interaction for SRRM1 www.ncbi.nlm.ni...
Null ppi.PRPF40A View Gene Set 4.804e-09 96 1.919e-06 9 Protein-protein-interaction for PRPF40A www.ncbi.nlm.ni...
Null ppi.PABPC1 View Gene Set 1.086e-08 37 3.903e-06 10 Protein-protein-interaction for PABPC1 www.ncbi.nlm.ni...
Null ppi.KHDRBS2 View Gene Set 1.357e-08 48 4.064e-06 11 Protein-protein-interaction for KHDRBS2 www.ncbi.nlm.ni...
Null ppi.RRP1B View Gene Set 1.33e-08 21 4.064e-06 11 Protein-protein-interaction for RRP1B www.ncbi.nlm.ni...
Null ppi.PUF60 View Gene Set 1.795e-08 35 4.961e-06 13 Protein-protein-interaction for PUF60 www.ncbi.nlm.ni...
Null ppi.TOPORS View Gene Set 1.426e-07 28 3.661e-05 14 Protein-protein-interaction for TOPORS www.ncbi.nlm.ni...
Null ppi.RUVBL2 View Gene Set 1.876e-07 72 4.426e-05 15 Protein-protein-interaction for RUVBL2 www.ncbi.nlm.ni...
Null ppi.YWHAG View Gene Set 1.97e-07 119 4.426e-05 15 Protein-protein-interaction for YWHAG www.ncbi.nlm.ni...
Null ppi.CDT1 View Gene Set 3.096e-07 42 6.545e-05 17 Protein-protein-interaction for CDT1 www.ncbi.nlm.ni...
Null ppi.GSTK1 View Gene Set 4.828e-07 26 9.64e-05 18 Protein-protein-interaction for GSTK1 www.ncbi.nlm.ni...
Null ppi.GIYD2 View Gene Set 6.905e-07 32 0.0001306 19 Protein-protein-interaction for GIYD2 www.ncbi.nlm.ni...
Null ppi.HIST1H4A View Gene Set 9.594e-07 31 0.0001724 20 Protein-protein-interaction for HIST1H4A www.ncbi.nlm.ni...
Null ppi.TP53 View Gene Set 1.46e-06 220 0.0002498 21 Protein-protein-interaction for TP53 www.ncbi.nlm.ni...
Null ppi.EIF1B View Gene Set 2.147e-06 25 0.0003482 22 Protein-protein-interaction for EIF1B www.ncbi.nlm.ni...
Null ppi.RFWD2 View Gene Set 2.228e-06 26 0.0003482 22 Protein-protein-interaction for RFWD2 www.ncbi.nlm.ni...
Null ppi.SIN3A View Gene Set 2.341e-06 116 0.0003506 24 Protein-protein-interaction for SIN3A www.ncbi.nlm.ni...
Null ppi.RAC1 View Gene Set 2.974e-06 57 0.0004275 25 Protein-protein-interaction for RAC1 www.ncbi.nlm.ni...
Null ppi.WBP4 View Gene Set 3.583e-06 35 0.000477 26 Protein-protein-interaction for WBP4 www.ncbi.nlm.ni...
Null ppi.MTA2 View Gene Set 3.539e-06 25 0.000477 26 Protein-protein-interaction for MTA2 www.ncbi.nlm.ni...
Null ppi.GPN1 View Gene Set 4.553e-06 27 0.0005844 28 Protein-protein-interaction for GPN1 www.ncbi.nlm.ni...
Null ppi.MGMT View Gene Set 4.881e-06 28 0.000605 29 Protein-protein-interaction for MGMT www.ncbi.nlm.ni...
Null ppi.RB1 View Gene Set 5.388e-06 93 0.0006454 30 Protein-protein-interaction for RB1 www.ncbi.nlm.ni...
Null ppi.SIP1 View Gene Set 5.586e-06 17 0.0006476 31 Protein-protein-interaction for SIP1 www.ncbi.nlm.ni...
Null ppi.WDR5 View Gene Set 7.609e-06 24 0.0008546 32 Protein-protein-interaction for WDR5 www.ncbi.nlm.ni...
Null ppi.TCERG1 View Gene Set 8.07e-06 39 0.0008789 33 Protein-protein-interaction for TCERG1 www.ncbi.nlm.ni...
Null ppi.MDM2 View Gene Set 9.954e-06 34 0.001052 34 Protein-protein-interaction for MDM2 www.ncbi.nlm.ni...
Null ppi.EGFR View Gene Set 1.046e-05 53 0.001074 35 Protein-protein-interaction for EGFR www.ncbi.nlm.ni...
Null ppi.RNPS1 View Gene Set 1.106e-05 44 0.001104 36 Protein-protein-interaction for RNPS1 www.ncbi.nlm.ni...
Null ppi.PINX1 View Gene Set 1.998e-05 20 0.001889 37 Protein-protein-interaction for PINX1 www.ncbi.nlm.ni...
Null ppi.BANF1 View Gene Set 1.991e-05 35 0.001889 37 Protein-protein-interaction for BANF1 www.ncbi.nlm.ni...
Null ppi.CNBP View Gene Set 2.054e-05 18 0.001893 39 Protein-protein-interaction for CNBP www.ncbi.nlm.ni...
Null ppi.MOBKL3 View Gene Set 2.571e-05 41 0.002274 40 Protein-protein-interaction for MOBKL3 www.ncbi.nlm.ni...
Null ppi.HNRNPAB View Gene Set 2.595e-05 7 0.002274 40 Protein-protein-interaction for HNRNPAB www.ncbi.nlm.ni...
Null ppi.DDX20 View Gene Set 3.047e-05 26 0.002546 42 Protein-protein-interaction for DDX20 www.ncbi.nlm.ni...
Null ppi.SETDB1 View Gene Set 3.008e-05 52 0.002546 42 Protein-protein-interaction for SETDB1 www.ncbi.nlm.ni...
Null ppi.EED View Gene Set 3.4e-05 25 0.002777 44 Protein-protein-interaction for EED www.ncbi.nlm.ni...
Null ppi.TUBB View Gene Set 4.124e-05 53 0.003293 45 Protein-protein-interaction for TUBB www.ncbi.nlm.ni...
Null ppi.TH1L View Gene Set 4.297e-05 29 0.003357 46 Protein-protein-interaction for TH1L www.ncbi.nlm.ni...
Null ppi.PSMD6 View Gene Set 4.711e-05 23 0.003603 47 Protein-protein-interaction for PSMD6 www.ncbi.nlm.ni...
Null ppi.HNRNPL View Gene Set 5.152e-05 9 0.003779 48 Protein-protein-interaction for HNRNPL www.ncbi.nlm.ni...
Null ppi.DDA1 View Gene Set 5.117e-05 44 0.003779 48 Protein-protein-interaction for DDA1 www.ncbi.nlm.ni...
Null ppi.CHFR View Gene Set 5.333e-05 22 0.003834 50 Protein-protein-interaction for CHFR www.ncbi.nlm.ni...
Null ppi.PBRM1 View Gene Set 5.635e-05 7 0.003971 51 Protein-protein-interaction for PBRM1 www.ncbi.nlm.ni...
Null ppi.HNRNPR View Gene Set 6.036e-05 12 0.004172 52 Protein-protein-interaction for HNRNPR www.ncbi.nlm.ni...
Null ppi.U2AF2 View Gene Set 6.336e-05 23 0.004296 53 Protein-protein-interaction for U2AF2 www.ncbi.nlm.ni...
Null ppi.MBD2 View Gene Set 6.603e-05 12 0.004395 54 Protein-protein-interaction for MBD2 www.ncbi.nlm.ni...
Null ppi.CARM1 View Gene Set 6.902e-05 35 0.004432 55 Protein-protein-interaction for CARM1 www.ncbi.nlm.ni...
Null ppi.SGOL1 View Gene Set 7.093e-05 24 0.004432 55 Protein-protein-interaction for SGOL1 www.ncbi.nlm.ni...
Null ppi.PPP2R1B View Gene Set 7.023e-05 15 0.004432 55 Protein-protein-interaction for PPP2R1B www.ncbi.nlm.ni...
Null ppi.PAAF1 View Gene Set 7.152e-05 20 0.004432 55 Protein-protein-interaction for PAAF1 www.ncbi.nlm.ni...
Null ppi.SRPK2 View Gene Set 7.683e-05 7 0.00468 59 Protein-protein-interaction for SRPK2 www.ncbi.nlm.ni...
Null ppi.WNK1 View Gene Set 8.01e-05 24 0.004798 60 Protein-protein-interaction for WNK1 www.ncbi.nlm.ni...
Null ppi.CCDC47 View Gene Set 8.435e-05 6 0.004831 61 Protein-protein-interaction for CCDC47 www.ncbi.nlm.ni...
Null ppi.IGSF21 View Gene Set 8.468e-05 30 0.004831 61 Protein-protein-interaction for IGSF21 www.ncbi.nlm.ni...
Null ppi.EIF3F View Gene Set 8.274e-05 25 0.004831 61 Protein-protein-interaction for EIF3F www.ncbi.nlm.ni...
Null ppi.SUPT16H View Gene Set 9.735e-05 15 0.005222 64 Protein-protein-interaction for SUPT16H www.ncbi.nlm.ni...
Null ppi.USP50 View Gene Set 9.682e-05 22 0.005222 64 Protein-protein-interaction for USP50 www.ncbi.nlm.ni...
Null ppi.SRPK1 View Gene Set 9.362e-05 12 0.005222 64 Protein-protein-interaction for SRPK1 www.ncbi.nlm.ni...
Null ppi.EIF3J View Gene Set 9.521e-05 11 0.005222 64 Protein-protein-interaction for EIF3J www.ncbi.nlm.ni...
Null ppi.RUVBL1 View Gene Set 0.0001 41 0.005287 68 Protein-protein-interaction for RUVBL1 www.ncbi.nlm.ni...
Null ppi.VHL View Gene Set 0.0001029 51 0.005361 69 Protein-protein-interaction for VHL www.ncbi.nlm.ni...
Null ppi.SUMO2 View Gene Set 0.0001062 55 0.005453 70 Protein-protein-interaction for SUMO2 www.ncbi.nlm.ni...
Null ppi.TUBA1B View Gene Set 0.0001084 22 0.005465 71 Protein-protein-interaction for TUBA1B www.ncbi.nlm.ni...
Null ppi.GEMIN4 View Gene Set 0.0001095 29 0.005465 71 Protein-protein-interaction for GEMIN4 www.ncbi.nlm.ni...
Null ppi.IKBKE View Gene Set 0.0001142 23 0.005623 73 Protein-protein-interaction for IKBKE www.ncbi.nlm.ni...
Null ppi.XPO1 View Gene Set 0.0001163 43 0.005644 74 Protein-protein-interaction for XPO1 www.ncbi.nlm.ni...
Null ppi.DYNLL1 View Gene Set 0.0001178 55 0.005644 74 Protein-protein-interaction for DYNLL1 www.ncbi.nlm.ni...
Null ppi.STAU1 View Gene Set 0.0001223 21 0.005783 76 Protein-protein-interaction for STAU1 www.ncbi.nlm.ni...
Null ppi.NUP54 View Gene Set 0.0001242 10 0.005798 77 Protein-protein-interaction for NUP54 www.ncbi.nlm.ni...
Null ppi.TRIB3 View Gene Set 0.0001362 26 0.006275 78 Protein-protein-interaction for TRIB3 www.ncbi.nlm.ni...
Null ppi.C20orf20 View Gene Set 0.0001444 16 0.006327 79 Protein-protein-interaction for C20orf20 www.ncbi.nlm.ni...
Null ppi.ZMYM2 View Gene Set 0.0001426 20 0.006327 79 Protein-protein-interaction for ZMYM2 www.ncbi.nlm.ni...
Null ppi.TRIM5 View Gene Set 0.0001442 16 0.006327 79 Protein-protein-interaction for TRIM5 www.ncbi.nlm.ni...
Null ppi.CCNA1 View Gene Set 0.0001408 25 0.006327 79 Protein-protein-interaction for CCNA1 www.ncbi.nlm.ni...
Null ppi.TAPBP View Gene Set 0.0001578 7 0.006833 83 Protein-protein-interaction for TAPBP www.ncbi.nlm.ni...
Null ppi.PSMD13 View Gene Set 0.0001601 20 0.006848 84 Protein-protein-interaction for PSMD13 www.ncbi.nlm.ni...
Null ppi.PRMT1 View Gene Set 0.0001646 17 0.006958 85 Protein-protein-interaction for PRMT1 www.ncbi.nlm.ni...
Null ppi.IPO7 View Gene Set 0.0001698 9 0.006964 86 Protein-protein-interaction for IPO7 www.ncbi.nlm.ni...
Null ppi.GORASP2 View Gene Set 0.0001705 19 0.006964 86 Protein-protein-interaction for GORASP2 www.ncbi.nlm.ni...
Null ppi.SMARCA2 View Gene Set 0.0001697 29 0.006964 86 Protein-protein-interaction for SMARCA2 www.ncbi.nlm.ni...
Null ppi.EHMT1 View Gene Set 0.0001779 9 0.00717 89 Protein-protein-interaction for EHMT1 www.ncbi.nlm.ni...
Null ppi.IRS2 View Gene Set 0.0001796 38 0.00717 89 Protein-protein-interaction for IRS2 www.ncbi.nlm.ni...
Null ppi.XPOT View Gene Set 0.0001873 9 0.007399 91 Protein-protein-interaction for XPOT www.ncbi.nlm.ni...
Null ppi.SYVN1 View Gene Set 0.0001896 17 0.007407 92 Protein-protein-interaction for SYVN1 www.ncbi.nlm.ni...
Null ppi.XRN1 View Gene Set 0.0002195 25 0.008483 93 Protein-protein-interaction for XRN1 www.ncbi.nlm.ni...
Null ppi.UBOX5 View Gene Set 0.0002233 13 0.008539 94 Protein-protein-interaction for UBOX5 www.ncbi.nlm.ni...
Null ppi.SSRP1 View Gene Set 0.0002305 21 0.008721 95 Protein-protein-interaction for SSRP1 www.ncbi.nlm.ni...
Null ppi.LARP1 View Gene Set 0.0002332 6 0.008728 96 Protein-protein-interaction for LARP1 www.ncbi.nlm.ni...
Null ppi.EIF3H View Gene Set 0.0002356 16 0.008728 96 Protein-protein-interaction for EIF3H www.ncbi.nlm.ni...
Null ppi.COPS3 View Gene Set 0.0002415 18 0.008858 98 Protein-protein-interaction for COPS3 www.ncbi.nlm.ni...
Null ppi.GORASP1 View Gene Set 0.0002487 10 0.009028 99 Protein-protein-interaction for GORASP1 www.ncbi.nlm.ni...
Null ppi.STRN3 View Gene Set 0.0002516 26 0.009041 100 Protein-protein-interaction for STRN3 www.ncbi.nlm.ni...
Null ppi.COPG View Gene Set 0.0002572 18 0.009151 101 Protein-protein-interaction for COPG www.ncbi.nlm.ni...
Null ppi.KIAA0368 View Gene Set 0.00027 6 0.009331 102 Protein-protein-interaction for KIAA0368 www.ncbi.nlm.ni...
Null ppi.MYOC View Gene Set 0.0002684 25 0.009331 102 Protein-protein-interaction for MYOC www.ncbi.nlm.ni...
Null ppi.BCL11B View Gene Set 0.0002695 14 0.009331 102 Protein-protein-interaction for BCL11B www.ncbi.nlm.ni...
Null ppi.CBX5 View Gene Set 0.0002772 46 0.00949 105 Protein-protein-interaction for CBX5 www.ncbi.nlm.ni...
Null ppi.NR1H4 View Gene Set 0.0002812 17 0.009534 106 Protein-protein-interaction for NR1H4 www.ncbi.nlm.ni...
Null ppi.HEATR2 View Gene Set 0.0002895 13 0.009545 107 Protein-protein-interaction for HEATR2 www.ncbi.nlm.ni...
Null ppi.USP14 View Gene Set 0.0002842 22 0.009545 107 Protein-protein-interaction for USP14 www.ncbi.nlm.ni...
Null ppi.YTHDC1 View Gene Set 0.0002886 12 0.009545 107 Protein-protein-interaction for YTHDC1 www.ncbi.nlm.ni...
Null ppi.C1orf103 View Gene Set 0.0002931 100 0.009575 110 Protein-protein-interaction for C1orf103 www.ncbi.nlm.ni...
Null ppi.BCL2L11 View Gene Set 0.000299 18 0.009682 111 Protein-protein-interaction for BCL2L11 www.ncbi.nlm.ni...
Null ppi.DDX56 View Gene Set 0.0003062 20 0.009802 112 Protein-protein-interaction for DDX56 www.ncbi.nlm.ni...
Null ppi.EIF3A View Gene Set 0.0003082 13 0.009802 112 Protein-protein-interaction for EIF3A www.ncbi.nlm.ni...
Null ppi.GCN1L1 View Gene Set 0.0003298 15 0.009846 114 Protein-protein-interaction for GCN1L1 www.ncbi.nlm.ni...
Null ppi.FBXW11 View Gene Set 0.0003315 27 0.009846 114 Protein-protein-interaction for FBXW11 www.ncbi.nlm.ni...
Null ppi.ARFIP2 View Gene Set 0.0003236 10 0.009846 114 Protein-protein-interaction for ARFIP2 www.ncbi.nlm.ni...
Null ppi.CCDC53 View Gene Set 0.0003188 13 0.009846 114 Protein-protein-interaction for CCDC53 www.ncbi.nlm.ni...
Null ppi.BRF2 View Gene Set 0.0003239 25 0.009846 114 Protein-protein-interaction for BRF2 www.ncbi.nlm.ni...
Null ppi.UBQLN4 View Gene Set 0.0003173 122 0.009846 114 Protein-protein-interaction for UBQLN4 www.ncbi.nlm.ni...
Null ppi.SH3GL3 View Gene Set 0.0003267 14 0.009846 114 Protein-protein-interaction for SH3GL3 www.ncbi.nlm.ni...
Null ppi.RPL23 View Gene Set 0.0003229 7 0.009846 114 Protein-protein-interaction for RPL23 www.ncbi.nlm.ni...
Null ppi.MCM7 View Gene Set 0.000337 12 0.009848 122 Protein-protein-interaction for MCM7 www.ncbi.nlm.ni...
Null ppi.PSMD10 View Gene Set 0.0003347 16 0.009848 122 Protein-protein-interaction for PSMD10 www.ncbi.nlm.ni...
Null ppi.GSN View Gene Set 0.0003516 13 0.01003 124 Protein-protein-interaction for GSN www.ncbi.nlm.ni...
Null ppi.RPL5 View Gene Set 0.0003514 11 0.01003 124 Protein-protein-interaction for RPL5 www.ncbi.nlm.ni...
Null ppi.CDYL View Gene Set 0.0003485 9 0.01003 124 Protein-protein-interaction for CDYL www.ncbi.nlm.ni...
Null ppi.ALL1 View Gene Set 0.000358 19 0.01013 127 Protein-protein-interaction for ALL1 www.ncbi.nlm.ni...
Null ppi.ZNRF1 View Gene Set 0.0003682 12 0.01034 128 Protein-protein-interaction for ZNRF1 www.ncbi.nlm.ni...
Null ppi.HABP4 View Gene Set 0.0003941 21 0.01094 129 Protein-protein-interaction for HABP4 www.ncbi.nlm.ni...
Null ppi.UBC View Gene Set 0.0003986 293 0.01094 129 Protein-protein-interaction for UBC www.ncbi.nlm.ni...
Null ppi.UBA5 View Gene Set 0.0003965 35 0.01094 129 Protein-protein-interaction for UBA5 www.ncbi.nlm.ni...
Null ppi.LSM1 View Gene Set 0.0004302 18 0.01171 132 Protein-protein-interaction for LSM1 www.ncbi.nlm.ni...
Null ppi.CAV1 View Gene Set 0.0004384 10 0.01176 133 Protein-protein-interaction for CAV1 www.ncbi.nlm.ni...
Null ppi.BCL7C View Gene Set 0.0004378 11 0.01176 133 Protein-protein-interaction for BCL7C www.ncbi.nlm.ni...
Null ppi.RCOR1 View Gene Set 0.0004601 21 0.012 135 Protein-protein-interaction for RCOR1 www.ncbi.nlm.ni...
Null ppi.UBR5 View Gene Set 0.0004539 21 0.012 135 Protein-protein-interaction for UBR5 www.ncbi.nlm.ni...
Null ppi.EXOSC4 View Gene Set 0.0004609 21 0.012 135 Protein-protein-interaction for EXOSC4 www.ncbi.nlm.ni...
Null ppi.SLC2A1 View Gene Set 0.0004548 7 0.012 135 Protein-protein-interaction for SLC2A1 www.ncbi.nlm.ni...
Null ppi.PPP4C View Gene Set 0.0005058 8 0.01303 139 Protein-protein-interaction for PPP4C www.ncbi.nlm.ni...
Null ppi.XPO5 View Gene Set 0.0005078 14 0.01303 139 Protein-protein-interaction for XPO5 www.ncbi.nlm.ni...
Null ppi.C20orf94 View Gene Set 0.0005184 15 0.01321 141 Protein-protein-interaction for C20orf94 www.ncbi.nlm.ni...
Null ppi.DZIP3 View Gene Set 0.0005259 20 0.01331 142 Protein-protein-interaction for DZIP3 www.ncbi.nlm.ni...
Null ppi.STMN1 View Gene Set 0.0005359 6 0.01347 143 Protein-protein-interaction for STMN1 www.ncbi.nlm.ni...
Null ppi.64196 View Gene Set 0.0005445 6 0.01359 144 Protein-protein-interaction for 64196 www.ncbi.nlm.ni...
Null ppi.CRTC2 View Gene Set 0.0005515 12 0.01363 145 Protein-protein-interaction for CRTC2 www.ncbi.nlm.ni...
Null ppi.HSPA4 View Gene Set 0.0005611 26 0.01363 145 Protein-protein-interaction for HSPA4 www.ncbi.nlm.ni...
Null ppi.PA2G4 View Gene Set 0.0005559 7 0.01363 145 Protein-protein-interaction for PA2G4 www.ncbi.nlm.ni...
Null ppi.SHBG View Gene Set 0.0005584 24 0.01363 145 Protein-protein-interaction for SHBG www.ncbi.nlm.ni...
Null ppi.EXOSC5 View Gene Set 0.0005727 20 0.01381 149 Protein-protein-interaction for EXOSC5 www.ncbi.nlm.ni...
Null ppi.KIAA1377 View Gene Set 0.000577 64 0.01383 150 Protein-protein-interaction for KIAA1377 www.ncbi.nlm.ni...
Null ppi.PTBP1 View Gene Set 0.0005814 9 0.01384 151 Protein-protein-interaction for PTBP1 www.ncbi.nlm.ni...
Null ppi.ARPC2 View Gene Set 0.0005949 7 0.01407 152 Protein-protein-interaction for ARPC2 www.ncbi.nlm.ni...
Null ppi.HAP1 View Gene Set 0.0006265 30 0.01472 153 Protein-protein-interaction for HAP1 www.ncbi.nlm.ni...
Null ppi.PSTPIP1 View Gene Set 0.0006418 28 0.01498 154 Protein-protein-interaction for PSTPIP1 www.ncbi.nlm.ni...
Null ppi.PDCD4 View Gene Set 0.0006652 11 0.01501 155 Protein-protein-interaction for PDCD4 www.ncbi.nlm.ni...
Null ppi.LYAR View Gene Set 0.000666 26 0.01501 155 Protein-protein-interaction for LYAR www.ncbi.nlm.ni...
Null ppi.RADIL View Gene Set 0.0006488 11 0.01501 155 Protein-protein-interaction for RADIL www.ncbi.nlm.ni...
Null ppi.MKRN3 View Gene Set 0.0006668 14 0.01501 155 Protein-protein-interaction for MKRN3 www.ncbi.nlm.ni...
Null ppi.STK24 View Gene Set 0.0006682 19 0.01501 155 Protein-protein-interaction for STK24 www.ncbi.nlm.ni...
Null ppi.EIF3B View Gene Set 0.0006644 11 0.01501 155 Protein-protein-interaction for EIF3B www.ncbi.nlm.ni...
Null ppi.EZR View Gene Set 0.0007069 50 0.01578 161 Protein-protein-interaction for EZR www.ncbi.nlm.ni...
Null ppi.PCBP2 View Gene Set 0.0007134 8 0.01583 162 Protein-protein-interaction for PCBP2 www.ncbi.nlm.ni...
Null ppi.RNF125 View Gene Set 0.000718 11 0.01583 163 Protein-protein-interaction for RNF125 www.ncbi.nlm.ni...
Null ppi.PRKDC View Gene Set 0.0007294 49 0.01589 164 Protein-protein-interaction for PRKDC www.ncbi.nlm.ni...
Null ppi.KEAP1 View Gene Set 0.0007273 22 0.01589 164 Protein-protein-interaction for KEAP1 www.ncbi.nlm.ni...
Null ppi.EEF1G View Gene Set 0.0007444 10 0.01601 166 Protein-protein-interaction for EEF1G www.ncbi.nlm.ni...
Null ppi.ORC4L View Gene Set 0.0007483 10 0.01601 166 Protein-protein-interaction for ORC4L www.ncbi.nlm.ni...
Null ppi.WDR48 View Gene Set 0.0007571 52 0.01601 166 Protein-protein-interaction for WDR48 www.ncbi.nlm.ni...
Null ppi.FSCN1 View Gene Set 0.000756 10 0.01601 166 Protein-protein-interaction for FSCN1 www.ncbi.nlm.ni...
Null ppi.HIST2H4A View Gene Set 0.0007485 17 0.01601 166 Protein-protein-interaction for HIST2H4A www.ncbi.nlm.ni...
Null ppi.RNF167 View Gene Set 0.0007622 8 0.01602 171 Protein-protein-interaction for RNF167 www.ncbi.nlm.ni...
Null ppi.GAR1 View Gene Set 0.0007683 10 0.01605 172 Protein-protein-interaction for GAR1 www.ncbi.nlm.ni...
Null ppi.C7orf64 View Gene Set 0.0007741 44 0.01608 173 Protein-protein-interaction for C7orf64 www.ncbi.nlm.ni...
Null ppi.TRIO View Gene Set 0.0007803 7 0.01612 174 Protein-protein-interaction for TRIO www.ncbi.nlm.ni...
Null ppi.STK25 View Gene Set 0.0007907 11 0.01624 175 Protein-protein-interaction for STK25 www.ncbi.nlm.ni...
Null ppi.CAND1 View Gene Set 0.0007993 12 0.01629 176 Protein-protein-interaction for CAND1 www.ncbi.nlm.ni...
Null ppi.UBE2A View Gene Set 0.0008023 7 0.01629 176 Protein-protein-interaction for UBE2A www.ncbi.nlm.ni...
Null ppi.HDHD2 View Gene Set 0.0008204 12 0.01656 178 Protein-protein-interaction for HDHD2 www.ncbi.nlm.ni...
Null ppi.1491938 View Gene Set 0.0008299 25 0.01657 179 Protein-protein-interaction for 1491938 www.ncbi.nlm.ni...
Null ppi.MYC View Gene Set 0.0008273 56 0.01657 179 Protein-protein-interaction for MYC www.ncbi.nlm.ni...
Null ppi.PTP4A2 View Gene Set 0.0008351 6 0.01658 181 Protein-protein-interaction for PTP4A2 www.ncbi.nlm.ni...
Null ppi.SAP25 View Gene Set 0.0008464 29 0.01667 182 Protein-protein-interaction for SAP25 www.ncbi.nlm.ni...
Null ppi.PGAM5 View Gene Set 0.0008487 14 0.01667 182 Protein-protein-interaction for PGAM5 www.ncbi.nlm.ni...
Null ppi.TSC1 View Gene Set 0.0008888 16 0.01731 184 Protein-protein-interaction for TSC1 www.ncbi.nlm.ni...
Null ppi.ING5 View Gene Set 0.0008909 25 0.01731 184 Protein-protein-interaction for ING5 www.ncbi.nlm.ni...
Null ppi.MAPKAPK2 View Gene Set 0.0009466 21 0.01829 186 Protein-protein-interaction for MAPKAPK2 www.ncbi.nlm.ni...
Null ppi.PSMD14 View Gene Set 0.00097 16 0.01851 187 Protein-protein-interaction for PSMD14 www.ncbi.nlm.ni...
Null ppi.TMBIM4 View Gene Set 0.0009644 9 0.01851 187 Protein-protein-interaction for TMBIM4 www.ncbi.nlm.ni...
Null ppi.DYNLT1 View Gene Set 0.0009736 7 0.01851 187 Protein-protein-interaction for DYNLT1 www.ncbi.nlm.ni...
Null ppi.PPP1R13B View Gene Set 0.001002 9 0.01896 190 Protein-protein-interaction for PPP1R13B www.ncbi.nlm.ni...
Null ppi.WDR77 View Gene Set 0.001047 18 0.0197 191 Protein-protein-interaction for WDR77 www.ncbi.nlm.ni...
Null ppi.PSMA2 View Gene Set 0.001095 6 0.02036 192 Protein-protein-interaction for PSMA2 www.ncbi.nlm.ni...
Null ppi.USP36 View Gene Set 0.001095 17 0.02036 192 Protein-protein-interaction for USP36 www.ncbi.nlm.ni...
Null ppi.CUL1 View Gene Set 0.001099 33 0.02036 192 Protein-protein-interaction for CUL1 www.ncbi.nlm.ni...
Null ppi.MYF6 View Gene Set 0.001126 6 0.02075 195 Protein-protein-interaction for MYF6 www.ncbi.nlm.ni...
Null ppi.ORC1L View Gene Set 0.001134 11 0.0208 196 Protein-protein-interaction for ORC1L www.ncbi.nlm.ni...
Null ppi.YWHAZ View Gene Set 0.001144 107 0.02088 197 Protein-protein-interaction for YWHAZ www.ncbi.nlm.ni...
Null ppi.MBD3L2 View Gene Set 0.001164 11 0.02102 198 Protein-protein-interaction for MBD3L2 www.ncbi.nlm.ni...
Null ppi.MCM6 View Gene Set 0.00116 7 0.02102 198 Protein-protein-interaction for MCM6 www.ncbi.nlm.ni...
Null ppi.LRPPRC View Gene Set 0.001196 12 0.02149 200 Protein-protein-interaction for LRPPRC www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxABS, ranks.only=TRUE, absolute=TRUE, alternative=mixed

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TNF alpha/NF-kB View Gene Set 4.85e-05 170 0.000485 1 CELL_MAP - TNF alpha/NF-kB gene set www.pathwaycomm...
Null Alpha6Beta4Integrin View Gene Set 0.0004058 49 0.002029 2 CELL_MAP - Alpha6Beta4Integrin gene set www.pathwaycomm...
Null AndrogenReceptor View Gene Set 0.0007629 78 0.002543 3 CELL_MAP - AndrogenReceptor gene set www.pathwaycomm...
Null EGFR1 View Gene Set 0.01577 137 0.03943 4 CELL_MAP - EGFR1 gene set www.pathwaycomm...
Null TGFBR View Gene Set 0.02592 124 0.04321 5 CELL_MAP - TGFBR gene set www.pathwaycomm...
Null NOTCH