Marchionni Lab Surfing the Genome

FANTOM-CAT Transcriptome


Original manuscript

Recounting the FANTOM CAGE-Associated Transcriptome.
Recounting the FANTOM CAGE-Associated Transcriptome.
Eddie Luidy Imada, Diego Fernando Sanchez, Leonardo Collado-Torres, Christopher Wilks, Tejasvi Matam, …, Jeffrey T Leek, Alexander Favorov, Gloria R Franco, Ben Langmead, Luigi Marchionni
Genome research  ·  20 Feb 2020  ·  pubmed:32079618

Code and scripts for gene expression quantification

The code to extract expression expression information from recount2:


Code and scripts for reproduction of figures and other analyses

The code to reproduce all figures and analyses can be downloaded here:


Data availability

The expression data can be also dowloaded from recount2: