Differentially expressed gene lists:

Click on the hyperlinks to see the results.
FileName Description
BATCH.ls Differential gene expression analysis (non redundant genes, least squares): BATCH.ls
Buphenyl.ls Differential gene expression analysis (non redundant genes, least squares): Buphenyl.ls
SAHA.ls Differential gene expression analysis (non redundant genes, least squares): SAHA.ls
TSA.ls Differential gene expression analysis (non redundant genes, least squares): TSA.ls
TSA1-e06.ls Differential gene expression analysis (non redundant genes, least squares): TSA1-e06.ls
TSA1-e07.ls Differential gene expression analysis (non redundant genes, least squares): TSA1-e07.ls
VPA.ls Differential gene expression analysis (non redundant genes, least squares): VPA.ls
VPA1e03.ls Differential gene expression analysis (non redundant genes, least squares): VPA1e03.ls
VPA2e04.ls Differential gene expression analysis (non redundant genes, least squares): VPA2e04.ls
VPA5e04.ls Differential gene expression analysis (non redundant genes, least squares): VPA5e04.ls
VPA5e05.ls Differential gene expression analysis (non redundant genes, least squares): VPA5e05.ls
allHDACi.ls Differential gene expression analysis (non redundant genes, least squares): allHDACi.ls

Diagnostics and results figures:

Click on the hyperlinks to see the results.
FileName Description
maPlot.frma.1 MAplots for each array after preprocessing (first half of the dataplatform)
maPlot.frma.2 MAplots for each array after preprocessing (second half of the dataplatform)
maPlot.frmaNQ.2 MAplots for each array after preprocessing and standardization (first half of the dataplatform)
maPlot.frmaNQ.1 MAplots for each array after preprocessing and standardization (second half of the dataplatform)
boxPlot.affy Boxplot for Log2 expression after preprocessing and standardization
heatmap.sampleCor.frma Pair-wise correlation heatmap after preprocessing
heatmap.sampleCor.frmaNQ Pair-wise correlation heatmap after preprocessing and standardization
qqPlots QQ-plot for each contrast (least squares method)
tStatDens.jpg Moderated t-statistics histograms and density plots comparing models (least squares)
contrasts.BvsM Volcano plots for each performed comparison
contrasts.MAplot MAplots for each performed comparison