AFA results for: miR.206vsControl.ls

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Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
KEGG 03030	View Gene Set	2.345e-13	36	5.017e-11	1	DNA replication	www.genome.jp/d...
KEGG 04110	View Gene Set	2.997e-10	128	3.207e-08	2	Cell cycle	www.genome.jp/d...
KEGG 03430	View Gene Set	7.088e-07	23	5.056e-05	3	Mismatch repair	www.genome.jp/d...
KEGG 03440	View Gene Set	2.967e-06	28	0.0001587	4	Homologous recombination	www.genome.jp/d...
KEGG 04914	View Gene Set	5.355e-06	87	0.0002292	5	Progesterone-mediated oocyte maturation	www.genome.jp/d...
KEGG 04114	View Gene Set	2.607e-05	114	0.0009298	6	Oocyte meiosis	www.genome.jp/d...
KEGG 03410	View Gene Set	0.0004317	34	0.0132	7	Base excision repair	www.genome.jp/d...
KEGG 00030	View Gene Set	0.0007996	27	0.02139	8	Pentose phosphate pathway	www.genome.jp/d...
KEGG 03420	View Gene Set	0.001333	44	0.03169	9	Nucleotide excision repair	www.genome.jp/d...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
GO GO:0005694	View Gene Set	4.664e-22	507	6.231e-18	1	chromosome	amigo.geneontol...
GO GO:0044427	View Gene Set	2.332e-21	420	1.558e-17	2	chromosomal part	amigo.geneontol...
GO GO:0006259	View Gene Set	2.51e-17	592	1.118e-13	3	DNA metabolic process	amigo.geneontol...
GO GO:0051276	View Gene Set	9.597e-17	548	3.205e-13	4	chromosome organization	amigo.geneontol...
GO GO:0006260	View Gene Set	1.649e-16	239	4.406e-13	5	DNA replication	amigo.geneontol...
GO GO:0000279	View Gene Set	1.539e-14	406	3.426e-11	6	M phase	amigo.geneontol...
GO GO:0022403	View Gene Set	9.506e-14	522	1.814e-10	7	cell cycle phase	amigo.geneontol...
GO GO:0006996	View Gene Set	3.574e-13	1501	5.968e-10	8	organelle organization	amigo.geneontol...
GO GO:0007059	View Gene Set	5.974e-13	94	8.868e-10	9	chromosome segregation	amigo.geneontol...
GO GO:0000793	View Gene Set	3.441e-12	136	4.597e-09	10	condensed chromosome	amigo.geneontol...
GO GO:0000280	View Gene Set	8.655e-12	276	9.036e-09	11	nuclear division	amigo.geneontol...
GO GO:0007067	View Gene Set	8.655e-12	276	9.036e-09	11	mitosis	amigo.geneontol...
GO GO:0051301	View Gene Set	8.793e-12	358	9.036e-09	11	cell division	amigo.geneontol...
GO GO:0000819	View Gene Set	2.166e-11	38	2.067e-08	14	sister chromatid segregation	amigo.geneontol...
GO GO:0000087	View Gene Set	2.683e-11	286	2.39e-08	15	M phase of mitotic cell cycle	amigo.geneontol...
GO GO:0005654	View Gene Set	2.903e-11	939	2.424e-08	16	nucleoplasm	amigo.geneontol...
GO GO:0048285	View Gene Set	3.825e-11	286	2.936e-08	17	organelle fission	amigo.geneontol...
GO GO:0003677	View Gene Set	3.956e-11	2028	2.936e-08	17	DNA binding	amigo.geneontol...
GO GO:0000070	View Gene Set	5.758e-11	37	4.049e-08	19	mitotic sister chromatid segregation	amigo.geneontol...
GO GO:0000775	View Gene Set	1.26e-10	146	8.414e-08	20	chromosome centromeric region	amigo.geneontol...
GO GO:0006281	View Gene Set	4.557e-10	309	2.899e-07	21	DNA repair	amigo.geneontol...
GO GO:0006974	View Gene Set	5.156e-10	412	3.131e-07	22	response to DNA damage stimulus	amigo.geneontol...
GO GO:0005634	View Gene Set	7.181e-10	5198	4.171e-07	23	nucleus	amigo.geneontol...
GO GO:0007049	View Gene Set	1.01e-09	1006	5.622e-07	24	cell cycle	amigo.geneontol...
GO GO:0006261	View Gene Set	1.408e-09	74	7.524e-07	25	DNA-dependent DNA replication	amigo.geneontol...
GO GO:0022402	View Gene Set	1.693e-09	676	8.375e-07	26	cell cycle process	amigo.geneontol...
GO GO:0044428	View Gene Set	1.669e-09	1938	8.375e-07	26	nuclear part	amigo.geneontol...
GO GO:0000228	View Gene Set	2.46e-09	177	1.174e-06	28	nuclear chromosome	amigo.geneontol...
GO GO:0034641	View Gene Set	7.096e-09	4584	3.269e-06	29	cellular nitrogen compound metabolic process	amigo.geneontol...
GO GO:0006297	View Gene Set	7.493e-09	17	3.337e-06	30	nucleotide-excision repair DNA gap filling	amigo.geneontol...
GO GO:0090304	View Gene Set	8.855e-09	3724	3.816e-06	31	nucleic acid metabolic process	amigo.geneontol...
GO GO:0005657	View Gene Set	9.47e-09	34	3.954e-06	32	replication fork	amigo.geneontol...
GO GO:0000785	View Gene Set	1.231e-08	213	4.984e-06	33	chromatin	amigo.geneontol...
GO GO:0000075	View Gene Set	1.354e-08	109	5.321e-06	34	cell cycle checkpoint	amigo.geneontol...
GO GO:0043228	View Gene Set	2.092e-08	2690	7.762e-06	35	non-membrane-bounded organelle	amigo.geneontol...
GO GO:0043232	View Gene Set	2.092e-08	2690	7.762e-06	35	intracellular non-membrane-bounded organelle	amigo.geneontol...
GO GO:0007051	View Gene Set	2.358e-08	57	8.514e-06	37	spindle organization	amigo.geneontol...
GO GO:0006807	View Gene Set	4.624e-08	4698	1.626e-05	38	nitrogen compound metabolic process	amigo.geneontol...
GO GO:0000226	View Gene Set	5.129e-08	178	1.713e-05	39	microtubule cytoskeleton organization	amigo.geneontol...
GO GO:0016043	View Gene Set	5.047e-08	2937	1.713e-05	39	cellular component organization	amigo.geneontol...
GO GO:0000777	View Gene Set	6.055e-08	74	1.973e-05	41	condensed chromosome kinetochore	amigo.geneontol...
GO GO:0006310	View Gene Set	6.212e-08	130	1.976e-05	42	DNA recombination	amigo.geneontol...
GO GO:0000779	View Gene Set	7.226e-08	79	2.245e-05	43	condensed chromosome centromeric region	amigo.geneontol...
GO GO:0006139	View Gene Set	8.246e-08	4294	2.504e-05	44	nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0051171	View Gene Set	1.086e-07	3066	3.224e-05	45	regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0007017	View Gene Set	1.216e-07	281	3.533e-05	46	microtubule-based process	amigo.geneontol...
GO GO:0008094	View Gene Set	1.483e-07	61	4.215e-05	47	DNA-dependent ATPase activity	amigo.geneontol...
GO GO:0006325	View Gene Set	1.797e-07	425	5.002e-05	48	chromatin organization	amigo.geneontol...
GO GO:0071103	View Gene Set	1.846e-07	140	5.034e-05	49	DNA conformation change	amigo.geneontol...
GO GO:0044454	View Gene Set	1.889e-07	139	5.048e-05	50	nuclear chromosome part	amigo.geneontol...
GO GO:0019219	View Gene Set	2.121e-07	3040	5.484e-05	51	regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0033554	View Gene Set	2.134e-07	698	5.484e-05	51	cellular response to stress	amigo.geneontol...
GO GO:0034645	View Gene Set	3.461e-07	3529	8.724e-05	53	cellular macromolecule biosynthetic process	amigo.geneontol...
GO GO:0000278	View Gene Set	4.8e-07	489	0.0001187	54	mitotic cell cycle	amigo.geneontol...
GO GO:0006270	View Gene Set	7.632e-07	26	0.0001854	55	DNA-dependent DNA replication initiation	amigo.geneontol...
GO GO:0044249	View Gene Set	9.222e-07	4326	0.00022	56	cellular biosynthetic process	amigo.geneontol...
GO GO:0006323	View Gene Set	1.015e-06	119	0.000238	57	DNA packaging	amigo.geneontol...
GO GO:0006333	View Gene Set	1.083e-06	129	0.0002495	58	chromatin assembly or disassembly	amigo.geneontol...
GO GO:0009059	View Gene Set	1.199e-06	3597	0.0002714	59	macromolecule biosynthetic process	amigo.geneontol...
GO GO:0031326	View Gene Set	1.284e-06	3048	0.0002859	60	regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0051716	View Gene Set	1.551e-06	1102	0.0003396	61	cellular response to stimulus	amigo.geneontol...
GO GO:0032774	View Gene Set	1.701e-06	1953	0.0003665	62	RNA biosynthetic process	amigo.geneontol...
GO GO:0070603	View Gene Set	1.832e-06	21	0.0003884	63	SWI/SNF-type complex	amigo.geneontol...
GO GO:0051252	View Gene Set	2.256e-06	1869	0.0004709	64	regulation of RNA metabolic process	amigo.geneontol...
GO GO:0006351	View Gene Set	2.534e-06	1949	0.0005208	65	transcription DNA-dependent	amigo.geneontol...
GO GO:0007010	View Gene Set	2.739e-06	528	0.0005544	66	cytoskeleton organization	amigo.geneontol...
GO GO:0009058	View Gene Set	3.105e-06	4436	0.0006192	67	biosynthetic process	amigo.geneontol...
GO GO:0030528	View Gene Set	3.175e-06	950	0.0006238	68	transcription regulator activity	amigo.geneontol...
GO GO:0009889	View Gene Set	3.248e-06	3070	0.0006288	69	regulation of biosynthetic process	amigo.geneontol...
GO GO:0016585	View Gene Set	3.753e-06	84	0.0007062	70	chromatin remodeling complex	amigo.geneontol...
GO GO:0031981	View Gene Set	3.732e-06	1518	0.0007062	70	nuclear lumen	amigo.geneontol...
GO GO:0006355	View Gene Set	4.024e-06	1820	0.0007467	72	regulation of transcription DNA-dependent	amigo.geneontol...
GO GO:0030174	View Gene Set	4.803e-06	11	0.0008791	73	regulation of DNA-dependent DNA replication initiation	amigo.geneontol...
GO GO:0007052	View Gene Set	5.388e-06	22	0.0009728	74	mitotic spindle organization	amigo.geneontol...
GO GO:0003682	View Gene Set	5.614e-06	178	0.001	75	chromatin binding	amigo.geneontol...
GO GO:0000776	View Gene Set	6.132e-06	92	0.001078	76	kinetochore	amigo.geneontol...
GO GO:0051321	View Gene Set	6.265e-06	115	0.001087	77	meiotic cell cycle	amigo.geneontol...
GO GO:0043073	View Gene Set	6.743e-06	17	0.001155	78	germ cell nucleus	amigo.geneontol...
GO GO:0006350	View Gene Set	7.782e-06	2744	0.001316	79	transcription	amigo.geneontol...
GO GO:0045449	View Gene Set	7.879e-06	2647	0.001316	79	regulation of transcription	amigo.geneontol...
GO GO:0003676	View Gene Set	8.087e-06	2979	0.001334	81	nucleic acid binding	amigo.geneontol...
GO GO:0071564	View Gene Set	9.499e-06	11	0.001548	82	npBAF complex	amigo.geneontol...
GO GO:0003697	View Gene Set	1.001e-05	58	0.001611	83	single-stranded DNA binding	amigo.geneontol...
GO GO:0016568	View Gene Set	1.241e-05	324	0.001973	84	chromatin modification	amigo.geneontol...
GO GO:0008022	View Gene Set	1.276e-05	146	0.002005	85	protein C-terminus binding	amigo.geneontol...
GO GO:0044446	View Gene Set	1.342e-05	5019	0.002085	86	intracellular organelle part	amigo.geneontol...
GO GO:0006357	View Gene Set	1.399e-05	760	0.002123	87	regulation of transcription from RNA polymerase II promoter	amigo.geneontol...
GO GO:0015630	View Gene Set	1.414e-05	587	0.002123	87	microtubule cytoskeleton	amigo.geneontol...
GO GO:0016514	View Gene Set	1.41e-05	15	0.002123	87	SWI/SNF complex	amigo.geneontol...
GO GO:0006275	View Gene Set	1.489e-05	74	0.002211	90	regulation of DNA replication	amigo.geneontol...
GO GO:0007126	View Gene Set	1.536e-05	113	0.002217	91	meiosis	amigo.geneontol...
GO GO:0051327	View Gene Set	1.536e-05	113	0.002217	91	M phase of meiotic cell cycle	amigo.geneontol...
GO GO:0005856	View Gene Set	1.543e-05	1410	0.002217	91	cytoskeleton	amigo.geneontol...
GO GO:0006338	View Gene Set	1.597e-05	59	0.002245	94	chromatin remodeling	amigo.geneontol...
GO GO:0034728	View Gene Set	1.581e-05	93	0.002245	94	nucleosome organization	amigo.geneontol...
GO GO:0022616	View Gene Set	2.3e-05	8	0.003201	96	DNA strand elongation	amigo.geneontol...
GO GO:0030530	View Gene Set	2.528e-05	17	0.003481	97	heterogeneous nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0005819	View Gene Set	2.576e-05	167	0.003512	98	spindle	amigo.geneontol...
GO GO:0006289	View Gene Set	2.829e-05	57	0.003808	99	nucleotide-excision repair	amigo.geneontol...
GO GO:0045934	View Gene Set	2.85e-05	574	0.003808	99	negative regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0032993	View Gene Set	3.162e-05	99	0.004182	101	protein-DNA complex	amigo.geneontol...
GO GO:0034621	View Gene Set	3.367e-05	458	0.00436	102	cellular macromolecular complex subunit organization	amigo.geneontol...
GO GO:0051172	View Gene Set	3.394e-05	580	0.00436	102	negative regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0044430	View Gene Set	3.387e-05	979	0.00436	102	cytoskeletal part	amigo.geneontol...
GO GO:0031570	View Gene Set	3.54e-05	63	0.004505	105	DNA integrity checkpoint	amigo.geneontol...
GO GO:0051726	View Gene Set	3.715e-05	451	0.004683	106	regulation of cell cycle	amigo.geneontol...
GO GO:0005663	View Gene Set	3.819e-05	6	0.004768	107	DNA replication factor C complex	amigo.geneontol...
GO GO:0000940	View Gene Set	4.091e-05	12	0.005061	108	outer kinetochore of condensed chromosome	amigo.geneontol...
GO GO:0010556	View Gene Set	4.185e-05	2901	0.00513	109	regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0030261	View Gene Set	4.407e-05	27	0.005353	110	chromosome condensation	amigo.geneontol...
GO GO:0000076	View Gene Set	5.002e-05	7	0.005914	111	DNA replication checkpoint	amigo.geneontol...
GO GO:0032297	View Gene Set	5.002e-05	7	0.005914	111	negative regulation of DNA-dependent DNA replication initiation	amigo.geneontol...
GO GO:0090329	View Gene Set	4.964e-05	18	0.005914	111	regulation of DNA-dependent DNA replication	amigo.geneontol...
GO GO:0006302	View Gene Set	5.183e-05	65	0.006074	114	double-strand break repair	amigo.geneontol...
GO GO:0032991	View Gene Set	5.47e-05	3237	0.006354	115	macromolecular complex	amigo.geneontol...
GO GO:0070013	View Gene Set	6.024e-05	1845	0.006938	116	intracellular organelle lumen	amigo.geneontol...
GO GO:0010628	View Gene Set	7.193e-05	632	0.008008	117	positive regulation of gene expression	amigo.geneontol...
GO GO:0045941	View Gene Set	7.099e-05	599	0.008008	117	positive regulation of transcription	amigo.geneontol...
GO GO:0043233	View Gene Set	7.188e-05	1881	0.008008	117	organelle lumen	amigo.geneontol...
GO GO:0044422	View Gene Set	7.049e-05	5089	0.008008	117	organelle part	amigo.geneontol...
GO GO:0043234	View Gene Set	8.688e-05	2680	0.009592	121	protein complex	amigo.geneontol...
GO GO:0001673	View Gene Set	8.947e-05	14	0.009797	122	male germ cell nucleus	amigo.geneontol...
GO GO:0043596	View Gene Set	9.624e-05	18	0.01045	123	nuclear replication fork	amigo.geneontol...
GO GO:0065004	View Gene Set	0.0001038	99	0.01118	124	protein-DNA complex assembly	amigo.geneontol...
GO GO:0007346	View Gene Set	0.0001066	174	0.01139	125	regulation of mitotic cell cycle	amigo.geneontol...
GO GO:0031323	View Gene Set	0.0001147	3768	0.01209	126	regulation of cellular metabolic process	amigo.geneontol...
GO GO:0000794	View Gene Set	0.0001149	52	0.01209	126	condensed nuclear chromosome	amigo.geneontol...
GO GO:0010564	View Gene Set	0.0001246	161	0.01301	128	regulation of cell cycle process	amigo.geneontol...
GO GO:0003689	View Gene Set	0.0001334	5	0.01371	129	DNA clamp loader activity	amigo.geneontol...
GO GO:0033170	View Gene Set	0.0001334	5	0.01371	129	protein-DNA loading ATPase activity	amigo.geneontol...
GO GO:0005623	View Gene Set	0.0001402	15067	0.01401	131	cell	amigo.geneontol...
GO GO:0005721	View Gene Set	0.0001405	7	0.01401	131	centromeric heterochromatin	amigo.geneontol...
GO GO:0031974	View Gene Set	0.0001386	1917	0.01401	131	membrane-enclosed lumen	amigo.geneontol...
GO GO:0044464	View Gene Set	0.0001395	15066	0.01401	131	cell part	amigo.geneontol...
GO GO:0070507	View Gene Set	0.0001455	43	0.0144	135	regulation of microtubule cytoskeleton organization	amigo.geneontol...
GO GO:0031109	View Gene Set	0.0001501	35	0.01474	136	microtubule polymerization or depolymerization	amigo.geneontol...
GO GO:0006271	View Gene Set	0.0001693	5	0.0163	137	DNA strand elongation involved in DNA replication	amigo.geneontol...
GO GO:0007093	View Gene Set	0.0001721	52	0.0163	137	mitotic cell cycle checkpoint	amigo.geneontol...
GO GO:0030894	View Gene Set	0.0001713	14	0.0163	137	replisome	amigo.geneontol...
GO GO:0043601	View Gene Set	0.0001713	14	0.0163	137	nuclear replisome	amigo.geneontol...
GO GO:0032559	View Gene Set	0.0001696	1503	0.0163	137	adenyl ribonucleotide binding	amigo.geneontol...
GO GO:0031328	View Gene Set	0.0001748	746	0.01645	142	positive regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0006366	View Gene Set	0.000178	919	0.01663	143	transcription from RNA polymerase II promoter	amigo.geneontol...
GO GO:0045935	View Gene Set	0.0001805	680	0.01675	144	positive regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0005815	View Gene Set	0.0001889	277	0.0174	145	microtubule organizing center	amigo.geneontol...
GO GO:0000724	View Gene Set	0.0001953	22	0.01775	146	double-strand break repair via homologous recombination	amigo.geneontol...
GO GO:0000725	View Gene Set	0.0001953	22	0.01775	146	recombinational repair	amigo.geneontol...
GO GO:0010468	View Gene Set	0.0001987	2958	0.01781	148	regulation of gene expression	amigo.geneontol...
GO GO:0034508	View Gene Set	0.0001987	8	0.01781	148	centromere complex assembly	amigo.geneontol...
GO GO:0009987	View Gene Set	0.0002022	11620	0.01801	150	cellular process	amigo.geneontol...
GO GO:0005524	View Gene Set	0.0002038	1480	0.01804	151	ATP binding	amigo.geneontol...
GO GO:0051173	View Gene Set	0.0002084	701	0.0182	152	positive regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0000922	View Gene Set	0.0002074	63	0.0182	152	spindle pole	amigo.geneontol...
GO GO:0016573	View Gene Set	0.0002098	56	0.0182	154	histone acetylation	amigo.geneontol...
GO GO:0000796	View Gene Set	0.0002114	6	0.01822	155	condensin complex	amigo.geneontol...
GO GO:0005658	View Gene Set	0.0002168	6	0.01846	156	alpha DNA polymerase:primase complex	amigo.geneontol...
GO GO:0017053	View Gene Set	0.0002183	43	0.01846	156	transcriptional repressor complex	amigo.geneontol...
GO GO:0003727	View Gene Set	0.0002178	28	0.01846	156	single-stranded RNA binding	amigo.geneontol...
GO GO:0043489	View Gene Set	0.000242	20	0.02021	159	RNA stabilization	amigo.geneontol...
GO GO:0048255	View Gene Set	0.000242	20	0.02021	159	mRNA stabilization	amigo.geneontol...
GO GO:0033043	View Gene Set	0.0002508	251	0.0208	161	regulation of organelle organization	amigo.geneontol...
GO GO:0005886	View Gene Set	0.0002522	3759	0.0208	161	plasma membrane	amigo.geneontol...
GO GO:0006473	View Gene Set	0.0002572	61	0.02099	163	protein amino acid acetylation	amigo.geneontol...
GO GO:0050000	View Gene Set	0.0002592	17	0.02099	163	chromosome localization	amigo.geneontol...
GO GO:0051303	View Gene Set	0.0002592	17	0.02099	163	establishment of chromosome localization	amigo.geneontol...
GO GO:0007186	View Gene Set	0.0002616	543	0.02106	166	G-protein coupled receptor protein signaling pathway	amigo.geneontol...
GO GO:0007062	View Gene Set	0.0002849	20	0.02279	167	sister chromatid cohesion	amigo.geneontol...
GO GO:0000077	View Gene Set	0.000314	59	0.02497	168	DNA damage checkpoint	amigo.geneontol...
GO GO:0043488	View Gene Set	0.000333	26	0.02606	169	regulation of mRNA stability	amigo.geneontol...
GO GO:0080090	View Gene Set	0.0003332	3585	0.02606	169	regulation of primary metabolic process	amigo.geneontol...
GO GO:0071565	View Gene Set	0.0003335	12	0.02606	169	nBAF complex	amigo.geneontol...
GO GO:0032886	View Gene Set	0.0004115	50	0.03178	172	regulation of microtubule-based process	amigo.geneontol...
GO GO:0051320	View Gene Set	0.0004115	32	0.03178	172	S phase	amigo.geneontol...
GO GO:0016070	View Gene Set	0.0004363	2596	0.0335	174	RNA metabolic process	amigo.geneontol...
GO GO:0031497	View Gene Set	0.000452	87	0.03451	175	chromatin assembly	amigo.geneontol...
GO GO:0034501	View Gene Set	0.000466	5	0.03537	176	protein localization to kinetochore	amigo.geneontol...
GO GO:0050794	View Gene Set	0.0004738	6236	0.03576	177	regulation of cellular process	amigo.geneontol...
GO GO:0042470	View Gene Set	0.0004836	93	0.0361	178	melanosome	amigo.geneontol...
GO GO:0048770	View Gene Set	0.0004836	93	0.0361	178	pigment granule	amigo.geneontol...
GO GO:0005575	View Gene Set	0.0004971	16391	0.0369	180	cellular_component	amigo.geneontol...
GO GO:0009891	View Gene Set	0.0005024	759	0.03708	181	positive regulation of biosynthetic process	amigo.geneontol...
GO GO:0010557	View Gene Set	0.0005101	702	0.03745	182	positive regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0000786	View Gene Set	0.0005333	65	0.03872	183	nucleosome	amigo.geneontol...
GO GO:0031519	View Gene Set	0.0005313	19	0.03872	183	PcG protein complex	amigo.geneontol...
GO GO:0070717	View Gene Set	0.0005378	10	0.03884	185	poly-purine tract binding	amigo.geneontol...
GO GO:0043566	View Gene Set	0.0005513	149	0.0396	186	structure-specific DNA binding	amigo.geneontol...
GO GO:0000792	View Gene Set	0.0005594	52	0.03997	187	heterochromatin	amigo.geneontol...
GO GO:0007064	View Gene Set	0.0005762	5	0.04095	188	mitotic sister chromatid cohesion	amigo.geneontol...
GO GO:0008156	View Gene Set	0.0006255	34	0.04375	189	negative regulation of DNA replication	amigo.geneontol...
GO GO:0050789	View Gene Set	0.0006241	6579	0.04375	189	regulation of biological process	amigo.geneontol...
GO GO:0051053	View Gene Set	0.0006207	46	0.04375	189	negative regulation of DNA metabolic process	amigo.geneontol...
GO GO:0043487	View Gene Set	0.0006314	27	0.04394	192	regulation of RNA stability	amigo.geneontol...
GO GO:0051325	View Gene Set	0.0006777	147	0.04691	193	interphase	amigo.geneontol...
GO GO:0044459	View Gene Set	0.0007133	2023	0.04912	194	plasma membrane part	amigo.geneontol...
GO GO:0051052	View Gene Set	0.0007253	132	0.0497	195	regulation of DNA metabolic process	amigo.geneontol...
GO GO:0043543	View Gene Set	0.0007309	72	0.04982	196	protein amino acid acylation	amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad chr19p13	View Gene Set	2.315e-05	514	0.007548	1	Genes in cytogenetic band chr19p13	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER	View Gene Set	5.568e-58	138	1.332e-54	1	The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome.	www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN	View Gene Set	7.232e-55	243	8.65e-52	2	Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h.	www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	View Gene Set	1.929e-51	1180	1.538e-48	3	Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314].	www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6	View Gene Set	9.837e-50	435	5.882e-47	4	Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome.	www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP	View Gene Set	1.008e-41	143	4.82e-39	5	Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3.	www.broad.mit.e...
Broad PUJANA_BRCA2_PCC_NETWORK	View Gene Set	5.598e-37	410	2.232e-34	6	Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA2 [Gene ID=675] across a compendium of normal tissues.	www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN	View Gene Set	1.015e-36	332	3.47e-34	7	Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265].	www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP	View Gene Set	4.149e-32	180	1.241e-29	8	Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients.	www.broad.mit.e...
Broad PUJANA_XPRSS_INT_NETWORK	View Gene Set	1.301e-31	164	3.457e-29	9	Genes constituting the XPRSS-Int network: intersection of genes whose expression correlates with BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200] in a compendium of normal tissues.	www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN	View Gene Set	3.762e-31	80	8.999e-29	10	Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK	View Gene Set	1e-30	744	2.175e-28	11	Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200].	www.broad.mit.e...
Broad MARKEY_RB1_ACUTE_LOF_DN	View Gene Set	8.919e-29	201	1.778e-26	12	Genes down-regulated in adult fibroblasts with inactivated RB1 [Gene ID=5925] by Cre-lox: acute loss of function (LOF) of RB1.	www.broad.mit.e...
Broad WHITEFORD_PEDIATRIC_CANCER_MARKERS	View Gene Set	2.792e-28	92	5.138e-26	13	Differentially expressed genes in a panel of xenografts representing 8 common pediatric tumors compared to the normal tissues.	www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN	View Gene Set	4.63e-28	86	7.91e-26	14	Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors.	www.broad.mit.e...
Broad FUJII_YBX1_TARGETS_DN	View Gene Set	1.166e-27	139	1.86e-25	15	Genes down-regulated in MCF-7 cells (breast cancer) after knockdown of YBX1 [Gene ID=4904] by RNAi.	www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP	View Gene Set	3.228e-25	53	4.826e-23	16	Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive.	www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN	View Gene Set	7.456e-25	96	1.049e-22	17	Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444].	www.broad.mit.e...
Broad CROONQUIST_NRAS_SIGNALING_DN	View Gene Set	1.508e-24	62	2.004e-22	18	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing a constantly active form of NRAS [Gene ID=4893] off a plasmid vector compared to those grown in the presence of IL6 [Gene ID=3569].	www.broad.mit.e...
Broad MITSIADES_RESPONSE_TO_APLIDIN_DN	View Gene Set	4.605e-24	241	5.798e-22	19	Genes down-regulated in the MM1S cells (multiple myeloma) after treatment with aplidin [PubChem=44152164] a marine-derived compound with potential anti-cancer properties.	www.broad.mit.e...
Broad BENPORATH_CYCLING_GENES	View Gene Set	5.497e-24	630	6.575e-22	20	Genes showing cell-cycle stage-specific expression [PMID=12058064].	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP	View Gene Set	9.521e-24	314	1.085e-21	21	Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	View Gene Set	1.019e-23	436	1.108e-21	22	Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs.	www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE	View Gene Set	5.774e-23	331	6.005e-21	23	The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module.	www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK	View Gene Set	1.277e-22	1582	1.272e-20	24	Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues.	www.broad.mit.e...
Broad ODONNELL_TFRC_TARGETS_DN	View Gene Set	2.723e-22	131	2.605e-20	25	Genes dpwn-regulated in P493-6 cells (B lymphocyte) upon knockdown of TFRC [Gene ID=7037] by RNAi.	www.broad.mit.e...
Broad BIDUS_METASTASIS_UP	View Gene Set	3.791e-21	203	3.488e-19	26	Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases.	www.broad.mit.e...
Broad BASAKI_YBX1_TARGETS_UP	View Gene Set	1.069e-20	279	9.471e-19	27	Genes up-regulated in SKOC-3 cells (ovarian cancer) after YB-1 (YBX1) [Gene ID=4904] knockdown by RNAi.	www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_DN	View Gene Set	8.473e-20	289	7.238e-18	28	Genes down-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi.	www.broad.mit.e...
Broad HOFFMANN_LARGE_TO_SMALL_PRE_BII_LYMPHOCYTE_UP	View Gene Set	1.055e-19	93	8.702e-18	29	Genes up-regulated during differentiation from large pre-BII to small pre-BII lymphocyte.	www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN	View Gene Set	1.399e-19	859	1.115e-17	30	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi.	www.broad.mit.e...
Broad LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN	View Gene Set	1.686e-19	158	1.301e-17	31	Genes down-regulated in Wilm's tumor samples compared to fetal kidney.	www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP	View Gene Set	2.5e-19	80	1.869e-17	32	Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages.	www.broad.mit.e...
Broad REN_BOUND_BY_E2F	View Gene Set	3.485e-19	47	2.526e-17	33	Genes whose promoters were bound by E2F1 [Gene ID=1869] and E2F4 [Gene ID=1874] in the primary fibroblasts WI-38 by ChIP on chip assay.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_2	View Gene Set	8.05e-19	265	5.663e-17	34	Genes identified by method 2 as coordinately down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP	View Gene Set	1.079e-18	152	7.372e-17	35	Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years.	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP	View Gene Set	2.507e-18	135	1.666e-16	36	Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability.	www.broad.mit.e...
Broad SONG_TARGETS_OF_IE86_CMV_PROTEIN	View Gene Set	5.167e-18	49	3.34e-16	37	Cellular genes up-regulated in forskin fibroblasts by expression of CMV EI86 protein off an adenovirus vector.	www.broad.mit.e...
Broad MORI_LARGE_PRE_BII_LYMPHOCYTE_UP	View Gene Set	5.449e-17	52	3.265e-15	38	Up-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Large Pre-BII stage.	www.broad.mit.e...
Broad MANALO_HYPOXIA_DN	View Gene Set	5.355e-17	276	3.265e-15	38	Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091].	www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN	View Gene Set	5.459e-17	43	3.265e-15	38	Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757].	www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP	View Gene Set	5.887e-17	43	3.434e-15	41	Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes.	www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN	View Gene Set	6.738e-17	1253	3.838e-15	42	Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue.	www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN	View Gene Set	8.872e-17	138	4.935e-15	43	Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371].	www.broad.mit.e...
Broad PUJANA_BRCA_CENTERED_NETWORK	View Gene Set	1.524e-16	92	8.285e-15	44	Genes constituting the BRCA-centered network (BCN).	www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP	View Gene Set	4.005e-16	577	2.129e-14	45	Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1).	www.broad.mit.e...
Broad MUELLER_PLURINET	View Gene Set	4.708e-16	294	2.448e-14	46	Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells).	www.broad.mit.e...
Broad ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN	View Gene Set	8.153e-16	42	4.149e-14	47	Genes down-regulated in P493-6 cells (B lymphocyte) by MYC [Gene ID=4609] and up-regulated by RNAi knockdown of TFRC [Gene ID=7037].	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP	View Gene Set	8.886e-16	589	4.428e-14	48	Genes up-regulated in poorly differentiated thyroid carcinoma (PDTC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP	View Gene Set	9.598e-16	408	4.685e-14	49	Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples.	www.broad.mit.e...
Broad BENPORATH_PROLIFERATION	View Gene Set	1.099e-15	140	5.256e-14	50	Set 'Proliferation Cluster': genes defined in human breast tumor expression data.	www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN	View Gene Set	2.213e-15	368	1.038e-13	51	Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors.	www.broad.mit.e...
Broad MORI_IMMATURE_B_LYMPHOCYTE_DN	View Gene Set	2.868e-15	52	1.319e-13	52	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the immature B stage.	www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP	View Gene Set	5.437e-15	485	2.454e-13	53	Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector.	www.broad.mit.e...
Broad FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP	View Gene Set	2.338e-14	144	1.035e-12	54	Genes up-regulated in genomically unstable Ewing's sarcoma tumors compared to the stable ones.	www.broad.mit.e...
Broad BENPORATH_ES_1	View Gene Set	4.401e-14	367	1.914e-12	55	Set 'ES exp1': genes overexpressed in human embryonic stem cells according to 5 or more out of 20 profiling studies.	www.broad.mit.e...
Broad MOLENAAR_TARGETS_OF_CCND1_AND_CDK4_DN	View Gene Set	5.673e-14	53	2.423e-12	56	Genes commonly down-regulated in SK-N-BE cells (neuroblastoma) after RNAi knockdown of CCND1 and CDK4 [Gene ID=595 1019].	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION	View Gene Set	1.046e-13	71	4.39e-12	57	Selected gradually up-regulated genes in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP	View Gene Set	3.207e-13	87	1.323e-11	58	Top 100 probe sets contrubuting to the positive side of the 2nd principal component; associated with adipocytic differentiation.	www.broad.mit.e...
Broad RHODES_UNDIFFERENTIATED_CANCER	View Gene Set	4.527e-13	60	1.835e-11	59	Genes commonly up-regulated in undifferentiated cancer relative to well-differentiated cancer based on the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad KAUFFMANN_MELANOMA_RELAPSE_UP	View Gene Set	5.524e-13	57	2.202e-11	60	DNA repair and replication genes up-regulated in melanoma patients who will relapse vs patients who will not.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPAIR_GENES	View Gene Set	9.516e-13	205	3.731e-11	61	Genes involved in DNA repair compiled manually by the authors.	www.broad.mit.e...
Broad VANTVEER_BREAST_CANCER_METASTASIS_DN	View Gene Set	1.928e-12	104	7.438e-11	62	Genes whose expression is significantly and negatively correlated with poor breast cancer clinical outcome (defined as developing distant metastases in less than 5 years).	www.broad.mit.e...
Broad GOLDRATH_ANTIGEN_RESPONSE	View Gene Set	2.367e-12	315	8.986e-11	63	Genes up-regulated at the peak of an antigen response of naive CD8+ [Gene ID=925 926] T-cells.	www.broad.mit.e...
Broad EGUCHI_CELL_CYCLE_RB1_TARGETS	View Gene Set	2.877e-12	19	1.075e-10	64	RB1 [Gene ID=5925] target genes involved in cell cycle regulation: genes down-regulated by doxorubicin [PubChem=31703] only in cells expressing RB1.	www.broad.mit.e...
Broad RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN	View Gene Set	4.221e-12	351	1.553e-10	65	Genes down-regulated in ALL (acute lymphoblastic leukemia) blasts after 1 week of treatment with glucocorticoids.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP	View Gene Set	4.466e-12	53	1.619e-10	66	The XPRSS-Int network genes up-regulated in breast tumors from patients with germline mutations in BRCA1 [Gene ID=672] compared to those with the wild type allele.	www.broad.mit.e...
Broad CHANG_CYCLING_GENES	View Gene Set	4.624e-12	49	1.651e-10	67	Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature.	www.broad.mit.e...
Broad LE_EGR2_TARGETS_UP	View Gene Set	9.472e-12	100	3.332e-10	68	Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [Gene ID=1959].	www.broad.mit.e...
Broad CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_UP	View Gene Set	1.021e-11	135	3.54e-10	69	Genes up-regulated in CD4+ [Gene ID=920] T lymphocytes after stimulation with prostaglandin E2 [PubChem=5280360].	www.broad.mit.e...
Broad ZHANG_BREAST_CANCER_PROGENITORS_UP	View Gene Set	1.835e-11	370	6.27e-10	70	Genes changed in cancer stem cells isolated from mammary tumors compared to the non-tumorigenic cells.	www.broad.mit.e...
Broad FARMER_BREAST_CANCER_CLUSTER_2	View Gene Set	2.652e-11	33	8.935e-10	71	Cluster 2: selected proliferation and 8q amplicon genes clustered together across breast cancer samples.	www.broad.mit.e...
Broad FURUKAWA_DUSP6_TARGETS_PCI35_DN	View Gene Set	5.104e-11	66	1.696e-09	72	Genes down-regulated in PCI-35 cells (pancreatic cancer lack endogenous DUSP6 [Gene ID=1848]) upon expression of DUSP6 off an adenoviral vector.	www.broad.mit.e...
Broad MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP	View Gene Set	1.221e-10	92	4.001e-09	73	Genes correlated with the early tumor onset in the Emu-myc transgenic mouse lymphoma model.	www.broad.mit.e...
Broad PRAMOONJAGO_SOX4_TARGETS_DN	View Gene Set	2.122e-10	51	6.858e-09	74	Genes down-regulated in ACC3 cells (adenoid cystic carcinoma) after knockdown of SOX4 [Gene ID=6659] by RNAi.	www.broad.mit.e...
Broad YU_MYC_TARGETS_UP	View Gene Set	4.251e-10	37	1.356e-08	75	Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609].	www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE	View Gene Set	8.615e-10	36	2.711e-08	76	Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation.	www.broad.mit.e...
Broad WU_APOPTOSIS_BY_CDKN1A_VIA_TP53	View Gene Set	9.298e-10	36	2.889e-08	77	Genes downstream of both CDKN1A and TP53 [Gene ID=1026 7157] in 2774qw1 cells (ovarian cancer).	www.broad.mit.e...
Broad SCIAN_CELL_CYCLE_TARGETS_OF_TP53_AND_TP73_DN	View Gene Set	9.615e-10	22	2.949e-08	78	Cell cycle genes changed in H1299 cells (lung cancer) after overexpression of either P53 [Gene ID=7157] or P73 [Gene ID=7161].	www.broad.mit.e...
Broad TARTE_PLASMA_CELL_VS_PLASMABLAST_DN	View Gene Set	1.061e-09	303	3.212e-08	79	Genes down-regulated in mature plasma cells compared with plasmablastic B lymphocytes.	www.broad.mit.e...
Broad VERNELL_RETINOBLASTOMA_PATHWAY_UP	View Gene Set	2.876e-09	39	8.599e-08	80	Cluster 1: genes up-regulated by RB1 [Gene ID=5925] CDNK2A [Gene ID=1029] and one of the E2Fs (E2F1 E2F2 or E2F3 [Gene ID=1869 1870 1871]).	www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP	View Gene Set	3.104e-09	269	9.166e-08	81	Genes up-regulated in nsopharyngeal carcinoma relative to the normal tissue.	www.broad.mit.e...
Broad KAUFFMANN_DNA_REPLICATION_GENES	View Gene Set	3.63e-09	128	1.059e-07	82	Genes involved in DNA replication compiled manually by the authors.	www.broad.mit.e...
Broad PUJANA_BREAST_CANCER_LIT_INT_NETWORK	View Gene Set	6.579e-09	100	1.896e-07	83	Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1 BRCA2 ATM and CHEK2 [Gene ID=672 675 472 11200]; the interactions were manually curated from the literature.	www.broad.mit.e...
Broad PYEON_HPV_POSITIVE_TUMORS_UP	View Gene Set	1.644e-08	86	4.682e-07	84	Up-regulated genes in cervical carcinoma and head and neck tumors positive for human papilloma virus (HPV) compared to those negative for HPV.	www.broad.mit.e...
Broad GEORGES_TARGETS_OF_MIR192_AND_MIR215	View Gene Set	2.317e-08	809	6.521e-07	85	Genes down-regulated in HCT116 cells (colon cancer) by expression of MIR192 or MIR215 [Gene ID=406967 406997] at 24 h.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP	View Gene Set	2.653e-08	52	7.379e-07	86	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G23 defined by unsupervised clustering.	www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_RESPONSIVE_TO_ESTROGEN_DN	View Gene Set	3.201e-08	41	8.801e-07	87	Genes down-regulated by estradiol [PubChem=5757] and down-regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer).	www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN	View Gene Set	3.283e-08	15	8.924e-07	88	Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors.	www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN	View Gene Set	3.637e-08	155	9.776e-07	89	Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples.	www.broad.mit.e...
Broad KALMA_E2F1_TARGETS	View Gene Set	6.632e-08	11	1.763e-06	90	DNA replication genes up-regulated in a Rat-1a cell line (fibroblast) by expression of E2F1 [Gene ID=1869].	www.broad.mit.e...
Broad PUJANA_ATM_PCC_NETWORK	View Gene Set	8.993e-08	1375	2.364e-06	91	Genes constituting the ATM-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of ATM [Gene ID=472] across a compendium of normal tissues.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	View Gene Set	9.853e-08	184	2.562e-06	92	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_KINOME_RED	View Gene Set	1.173e-07	15	2.984e-06	93	Genes in the red cluster of protein kinases distinguishing between luminal A and basal breast cancer subtypes.	www.broad.mit.e...
Broad FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL	View Gene Set	1.173e-07	15	2.984e-06	93	Protein kinases distinguishing between basal and luminal A subtypes of breast cancer.	www.broad.mit.e...
Broad SENESE_HDAC3_TARGETS_DN	View Gene Set	1.336e-07	487	3.364e-06	95	Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC3 [Gene ID=8841] by RNAi.	www.broad.mit.e...
Broad CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_UP	View Gene Set	1.368e-07	116	3.409e-06	96	Genes up-regulated in transformed NIH3T3 cells (fibroblasts transformed by activated KRAS [Gene ID=3845]) vs normal cells.	www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_DN	View Gene Set	1.994e-07	123	4.918e-06	97	Genes highly expressed in hepatocellular carcinoma with poor survival.	www.broad.mit.e...
Broad CROONQUIST_NRAS_VS_STROMAL_STIMULATION_DN	View Gene Set	2.029e-07	81	4.952e-06	98	Genes down-regulated in ANBL-6 cell line (multiple myeloma MM) expressing an activated form of NRAS [Gene ID=4893] off a plasmid vector compared to those co-cultured with bone marrow stromal cells.	www.broad.mit.e...
Broad SUNG_METASTASIS_STROMA_DN	View Gene Set	2.234e-07	53	5.399e-06	99	Genes down-regulated in metastatic vs non-metastatic stromal cells originated from either bone or prostate tissues.	www.broad.mit.e...
Broad WOOD_EBV_EBNA1_TARGETS_UP	View Gene Set	2.273e-07	104	5.438e-06	100	Genes up-regulated in the Ad/AH cells (adenocarcinoma) engineered to stably express the Epstein-Barr virus (EBV) gene EBNA1.	www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	View Gene Set	2.336e-07	639	5.533e-06	101	Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts.	www.broad.mit.e...
Broad WANG_CISPLATIN_RESPONSE_AND_XPC_UP	View Gene Set	2.382e-07	135	5.585e-06	102	Genes up-regulated in fibroblasts with defective XPC [Gene ID=7508] in response to cisplatin [PubChem=2767].	www.broad.mit.e...
Broad MARKEY_RB1_CHRONIC_LOF_UP	View Gene Set	2.77e-07	111	6.432e-06	103	Genes up-regulated in MEF cells (embryonic fibroblasts) isolated from RB1 [Gene ID=5925] knockout mice: chronic loss of function (LOF) of RB1.	www.broad.mit.e...
Broad BORCZUK_MALIGNANT_MESOTHELIOMA_UP	View Gene Set	3.113e-07	290	7.093e-06	104	Genes up-regulated in biphasic (mixed) vs epithelial subtypes of malignant peritoneal mesothelioma.	www.broad.mit.e...
Broad PAL_PRMT5_TARGETS_UP	View Gene Set	3.114e-07	178	7.093e-06	104	Genes up-regulated in NIH-3T3 cells (fibroblast) after knockdown of PRMT5 [Gene ID=10419] by RNAi.	www.broad.mit.e...
Broad MORI_MATURE_B_LYMPHOCYTE_DN	View Gene Set	4.419e-07	56	9.972e-06	106	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the mature B	www.broad.mit.e...
Broad SLEBOS_HEAD_AND_NECK_CANCER_WITH_HPV_UP	View Gene Set	5.605e-07	72	1.253e-05	107	Genes up-regulated in head and neck squamous cell carcinoma (HNSCC) samples positive for HPV compared to the HPV-negative tumors.	www.broad.mit.e...
Broad MOHANKUMAR_TLX1_TARGETS_UP	View Gene Set	5.88e-07	388	1.302e-05	108	Up-regulated in MCF7 cells (breast cancer) by TLX1 (HOX11) [Gene ID=3195].	www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_UP	View Gene Set	7.708e-07	629	1.692e-05	109	Genes up-regulated in basal subtype of breast cancer samles.	www.broad.mit.e...
Broad NADERI_BREAST_CANCER_PROGNOSIS_UP	View Gene Set	1.409e-06	37	3.063e-05	110	Up-regulated genes in the breast cancer prognostic signature of 70 genes that significantly correlated with survival.	www.broad.mit.e...
Broad GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN	View Gene Set	1.863e-06	51	4.015e-05	111	Genes from the turquoise module which are down-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphocholine (oxPAPC).	www.broad.mit.e...
Broad LIANG_SILENCED_BY_METHYLATION_DN	View Gene Set	2.095e-06	11	4.473e-05	112	Genes down-regulated in LD419 cells (fibroblast) after treatment with decitabine (5-aza-2'-deoxycytidine) [PubChem=451668].	www.broad.mit.e...
Broad PYEON_CANCER_HEAD_AND_NECK_VS_CERVICAL_UP	View Gene Set	2.332e-06	175	4.935e-05	113	Up-regulated genes in head and neck cancer compared to cervical carcinoma samples.	www.broad.mit.e...
Broad BILD_E2F3_ONCOGENIC_SIGNATURE	View Gene Set	2.683e-06	222	5.629e-05	114	Genes selected in supervised analyses to discriminate cells expressing E2F3 [Gene ID=1871] from control cells expressing GFP.	www.broad.mit.e...
Broad MORI_SMALL_PRE_BII_LYMPHOCYTE_DN	View Gene Set	2.833e-06	60	5.893e-05	115	Down-regulated genes in the B lymphocyte developmental signature based on expression profiling of lymphomas from the Emu-myc transgenic mice: the Small Pre-BII stage.	www.broad.mit.e...
Broad SHEPARD_BMYB_MORPHOLINO_DN	View Gene Set	2.889e-06	156	5.907e-05	116	Human orthologs of genes down-regulated in zebra fish after knockdown of BMYB [Gene ID=4605] by morpholino.	www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_A_DN	View Gene Set	2.878e-06	17	5.907e-05	116	Genes down-regulated in the luminal A subtype of breast cancer.	www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN	View Gene Set	3.246e-06	599	6.58e-05	118	Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress.	www.broad.mit.e...
Broad GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN	View Gene Set	3.581e-06	148	7.199e-05	119	Genes down-regulated in the A673 cells (Ewing sarcoma) after double knockdown of both FLI1 and DAX1 [Gene ID=2313 190] by RNAi.	www.broad.mit.e...
Broad RHODES_CANCER_META_SIGNATURE	View Gene Set	3.755e-06	54	7.484e-05	120	Genes commonly up-regulated in cancer relative to normal tissue according to the meta-analysis of the OncoMine gene expression database.	www.broad.mit.e...
Broad CHEN_HOXA5_TARGETS_9HR_DN	View Gene Set	5.035e-06	39	9.953e-05	121	Differentially expressed genes 9 hr after tinduction of HoxA5 [Gene ID=3205] expression in a breast cancer cell line.	www.broad.mit.e...
Broad SEMBA_FHIT_TARGETS_DN	View Gene Set	5.501e-06	10	0.0001079	122	Genes down-regulated in H1299 cells (non-small cell lung cancer NSCLC) expressing the Y144F mutant form of FHIT [Gene ID=2272].	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	View Gene Set	6.665e-06	308	0.0001296	123	Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION_CCNE1	View Gene Set	8.535e-06	38	0.0001646	124	Selected gradually up-regulated genes whose expression profile follows that of CCNE1 [Gene ID=898] in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN	View Gene Set	9.095e-06	76	0.000174	125	Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298].	www.broad.mit.e...
Broad KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN	View Gene Set	9.802e-06	10	0.0001861	126	Genes down-regulated in response to nutlin-3a [PubChem=216345] an inhibitor of MDM2 [Gene ID=4193] in skin fibroblast cultures after knockdown of TP53 [Gene ID=7157] by RNAi.	www.broad.mit.e...
Broad NAKAMURA_CANCER_MICROENVIRONMENT_DN	View Gene Set	1.083e-05	45	0.000204	127	Genes down-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro.	www.broad.mit.e...
Broad SHEPARD_CRUSH_AND_BURN_MUTANT_DN	View Gene Set	1.13e-05	147	0.0002111	128	Human orthologs of genes down-regulated in the crb ('crash and burn') zebrafish mutant that represents a loss-of-function mutation in BMYB [Gene ID=4605].	www.broad.mit.e...
Broad WAKASUGI_HAVE_ZNF143_BINDING_SITES	View Gene Set	1.211e-05	55	0.0002245	129	DNA repair genes whose promoters contain putative ZNF143 [Gene ID=7702] binding sites.	www.broad.mit.e...
Broad TANG_SENESCENCE_TP53_TARGETS_DN	View Gene Set	1.417e-05	40	0.0002607	130	Genes down-regulated in WI-38 cells (senescent primary fibroblasts) after inactivation of TP53 [Gene ID=7157] by GSE56 polypeptide.	www.broad.mit.e...
Broad LY_AGING_OLD_DN	View Gene Set	1.957e-05	47	0.0003574	131	Genes up-regulated in fibroblasts from old individuals compared to those from young donors.	www.broad.mit.e...
Broad GAL_LEUKEMIC_STEM_CELL_DN	View Gene Set	2.878e-05	239	0.0005215	132	Genes down-regulated in leukemic stem cells (LSC) defined as CD34+CD38- [Gene ID=947 952] cells from AML (acute myeloid leukemia patients) compared to the CD34+CD38+ cells.	www.broad.mit.e...
Broad MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP	View Gene Set	3.013e-05	10	0.0005418	133	Up-regulated genes predicting poor survival of patients with thyroid carcinoma.	www.broad.mit.e...
Broad SU_TESTIS	View Gene Set	3.589e-05	75	0.0006406	134	Genes up-regulated specifically in human testis tissue.	www.broad.mit.e...
Broad WEST_ADRENOCORTICAL_TUMOR_UP	View Gene Set	4.531e-05	283	0.0007969	135	Up-regulated genes in pediatric adrenocortical tumors (ACT) compared to the normal tissue.	www.broad.mit.e...
Broad BOHN_PRIMARY_IMMUNODEFICIENCY_SYNDROM_UP	View Gene Set	4.516e-05	35	0.0007969	135	Genes up-regulated in B lymphocytes from patients with primary immunodefiency syndrom.	www.broad.mit.e...
Broad FOURNIER_ACINAR_DEVELOPMENT_LATE_DN	View Gene Set	5.099e-05	21	0.0008899	137	Genes down-regulated late in HMEC cells (mammary epithelium) during acinar development in vitro.	www.broad.mit.e...
Broad MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_12	View Gene Set	5.134e-05	10	0.0008899	137	Amplification hot spot 12: colocolized fragile sites and cancer genes in the 17q11.1-q21; 17q25 region.	www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC	View Gene Set	6.172e-05	101	0.001062	139	Cluster 2: genes up-regulated in B493-6 cells (B lymphocytes) by serum alone or in combination with MYC [Gene ID=4609] but not by MYC alone.	www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP	View Gene Set	7.287e-05	127	0.001245	140	Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database.	www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_480_HELA	View Gene Set	0.0001155	159	0.00196	141	Genes whose expression peaked at 480 min after stimulation of HeLa cells with EGF [Gene ID=1950].	www.broad.mit.e...
Broad CHUANG_OXIDATIVE_STRESS_RESPONSE_DN	View Gene Set	0.0001196	10	0.002015	142	Genes down-regulated in MCF7 cells (breast cancer) after treatment with the oxydants: hydrogen peroxyde menadione and t-butyl hydroperoxyde [PubChem=784 4055 6410].	www.broad.mit.e...
Broad OLSSON_E2F3_TARGETS_DN	View Gene Set	0.0001256	28	0.002101	143	Genes down-regulated in the 5637 cell line (bladder cancer) after knockdown of E2F3 [Gene ID=1871] by RNAi.	www.broad.mit.e...
Broad GRESHOCK_CANCER_COPY_NUMBER_UP	View Gene Set	0.0001278	322	0.002123	144	Genes from common genomic gains observed in a meta analyis of copy number alterations across a panel of different cancer cell lines and tumor samples.	www.broad.mit.e...
Broad GRESHOCK_CANCER_COPY_NUMBER_DN	View Gene Set	0.0001356	345	0.002237	145	Genes from common genomic losses observed in a meta analyis of copy number alterations across a panel of different cancer cell lines and tumor samples.	www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP	View Gene Set	0.0001519	711	0.002488	146	Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples.	www.broad.mit.e...
Broad KENNY_CTNNB1_TARGETS_UP	View Gene Set	0.0001751	44	0.002849	147	Genes up-regulated in HC11 cells (mammary epithelium) by expression of constantly active CTNNB1 [Gene ID=1499].	www.broad.mit.e...
Broad WILCOX_PRESPONSE_TO_ROGESTERONE_UP	View Gene Set	0.000206	143	0.003329	148	Genes up-regulated in primary cultures of ovarian surface epithlium cells exposed to progesterone [PubChem=5994] for 5 days.	www.broad.mit.e...
Broad SCIBETTA_KDM5B_TARGETS_DN	View Gene Set	0.0002131	76	0.003421	149	Genes down-regulated in HB2 cells (mammary epithelium) upon expression of KDM5B [Gene ID=10765] off an adenoviral vector.	www.broad.mit.e...
Broad MATTIOLI_MGUS_VS_PCL	View Gene Set	0.0002158	109	0.003441	150	Genes changed in MGUS (monoclonal gammopathy of undetermined significance) compared to PCL (plasma cell leukemia) samples.	www.broad.mit.e...
Broad MATHEW_FANCONI_ANEMIA_GENES	View Gene Set	0.0002382	11	0.003773	151	Genes identified with the Fanconi anemia (FA) and the FA pathway.	www.broad.mit.e...
Broad SHEPARD_BMYB_TARGETS	View Gene Set	0.0002406	60	0.003787	152	Human orthologs of BMYB [Gene ID=4605] target genes in zebra fish identified as commonly changed in the BMYB loss of function mutant crb ('crush and burn') and after knockdown of BMYB by morpholino.	www.broad.mit.e...
Broad GEORGES_CELL_CYCLE_MIR192_TARGETS	View Gene Set	0.0002792	59	0.004364	153	Experimentally validated direct targets of MIR192 [Gene ID=406967] microRNA; MIR192 caused cell cycle arrest in HCT116 cells (colon cancer).	www.broad.mit.e...
Broad REICHERT_G1S_REGULATORS_AS_PI3K_TARGETS	View Gene Set	0.0003138	8	0.004843	154	G1 to S phase regulators significantly changed in DanG cells (pancreatic cancer) treated with Ly294002 [PubChem=3973] a phosphoinositide 3-kinase (PI3K) inhibitor.	www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	View Gene Set	0.0003127	44	0.004843	154	Up-regulated genes in hepatocellular carcinoma (HCC) subclass G123 defined by unsupervised clustering.	www.broad.mit.e...
Broad BONOME_OVARIAN_CANCER_POOR_SURVIVAL_DN	View Gene Set	0.0003784	19	0.005802	156	Top highly correlated genes negatively associated with poor survival of patients with suboptimally debulked ovarian tumors.	www.broad.mit.e...
Broad RIZ_ERYTHROID_DIFFERENTIATION_HBZ	View Gene Set	0.0003858	37	0.005879	157	Selected gradually up-regulated genes whose expression profile follows that of HBZ [Gene ID=3050] in the TLX1 [Gene ID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).	www.broad.mit.e...
Broad YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_12	View Gene Set	0.0003946	72	0.005974	158	Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 12.	www.broad.mit.e...
Broad SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP	View Gene Set	0.0003995	45	0.00601	159	Top 50 up-regulated markers distinguishing diffuse large B-cell lymphoma (DLBCL) from follicular lymphoma (FL) samples.	www.broad.mit.e...
Broad AMUNDSON_POOR_SURVIVAL_AFTER_GAMMA_RADIATION_2G	View Gene Set	0.0004213	151	0.006298	160	Genes with basal expression distinguishing NCI-60 cell lines with poor survival after 2 Gy gamma irradiation.	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_IKK_INHIBITOR_AND_TNF_DN	View Gene Set	0.0004381	97	0.006509	161	Genes down-regulated in BxPC3 cells (pancreatic cancer) after treatment with TNF [Gene ID=7124] or IKI-1 an inhibitor of I?B kinase (IKK).	www.broad.mit.e...
Broad JAEGER_METASTASIS_UP	View Gene Set	0.0004516	44	0.006669	162	Genes up-regulated in metastases from malignant melanoma compared to the primary tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP	View Gene Set	0.0004628	36	0.006751	163	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_DN	View Gene Set	0.0004628	36	0.006751	163	Down-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: moderately vs poorly differentiated tumors.	www.broad.mit.e...
Broad RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP	View Gene Set	0.0005413	220	0.007753	165	Up-regulated genes that vary between HNSCC (head and neck squamous cell carcinoma) groups formed on the basis of their level of pathological differentiation: well vs poorly differentiated tumors.	www.broad.mit.e...
Broad BHATTACHARYA_EMBRYONIC_STEM_CELL	View Gene Set	0.0005412	76	0.007753	165	The 'stemnes' signature: genes up-regulated and common to 6 human embryonic stem cell lines tested.	www.broad.mit.e...
Broad CHANG_CORE_SERUM_RESPONSE_UP	View Gene Set	0.0005368	66	0.007753	165	Up-regulated genes in the canonical gene expression signature of the fibroblast core serum response (CSR) defined by the Stanford group.	www.broad.mit.e...
Broad BENPORATH_ES_2	View Gene Set	0.0005549	39	0.007901	168	Set 'Set 'ES exp2': genes overexpressed in human embryonic stem cells according to a meta-analysis of 8 profiling studies.	www.broad.mit.e...
Broad HAMAI_APOPTOSIS_VIA_TRAIL_DN	View Gene Set	0.0006555	125	0.009223	169	Genes down-regulated in T1 cells (primary melanoma sensitive to TRAIL [Gene ID=8743]) compared to G1 cells (metastatic melanoma resistant to TRAIL).	www.broad.mit.e...
Broad FAELT_B_CLL_WITH_VH3_21_UP	View Gene Set	0.0006533	44	0.009223	169	Genes changed in samples from B-CLL (B-cell chronic lymphocytic leukemia) using the immunoglobulin heavy chain VH3-21 gene.	www.broad.mit.e...
Broad LY_AGING_PREMATURE_DN	View Gene Set	0.0006602	24	0.009236	171	Genes down-regulated in fibroblasts from patients with Hutchinson-Gilford progeria (premature aging) compared to those from normal young individuals.	www.broad.mit.e...
Broad POOLA_INVASIVE_BREAST_CANCER_UP	View Gene Set	0.0006803	278	0.009462	172	Genes up-regulated in atypical ductal hyperplastic tissues from patients with (ADHC) breast cancer vs those without the cancer (ADH).	www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN	View Gene Set	0.0007359	758	0.01018	173	Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi.	www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES	View Gene Set	0.0008808	384	0.01211	174	Housekeeping genes identified as expressed across 19 normal tissues.	www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_UP	View Gene Set	0.001073	132	0.01458	175	The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064].	www.broad.mit.e...
Broad SANA_RESPONSE_TO_IFNG_DN	View Gene Set	0.001067	79	0.01458	175	Genes down-regulated in five primary endothelial cell types (lung aortic iliac dermal and colon) by IFNG [Gene ID=3458].	www.broad.mit.e...
Broad OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP	View Gene Set	0.001128	114	0.01525	177	Genes up-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors.	www.broad.mit.e...
Broad DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_UP	View Gene Set	0.001217	351	0.01636	178	Genes up-regulated in T-PLL cells (T-cell prolymphocytic leukemia) bearing the inv(14)/t(14:14) chromosomal aberration.	www.broad.mit.e...
Broad SHAFFER_IRF4_TARGETS_IN_ACTIVATED_DENDRITIC_CELL	View Gene Set	0.001234	62	0.01649	179	IRF4 [Gene ID=3662] target genes up-regulated in plasmacytoid dendritic cells compared to monocytes.	www.broad.mit.e...
Broad BENPORATH_MYC_TARGETS_WITH_EBOX	View Gene Set	0.001257	229	0.0167	180	Set 'Myc targets1': targets of c-Myc [Gene ID=4609] identified by ChIP on chip in cultured cell lines focusing on E-box???containing genes; high affinity bound subset	www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_17Q11_Q21_AMPLICON	View Gene Set	0.001293	129	0.01708	181	Genes within amplicon 17q11-q21 identified in a copy number alterations study of 191 breast tumor samples.	www.broad.mit.e...
Broad LOPEZ_MESOTELIOMA_SURVIVAL_TIME_UP	View Gene Set	0.001337	13	0.01758	182	Top genes higher expressed in short term mesothelioma survivors.	www.broad.mit.e...
Broad STEIN_ESR1_TARGETS	View Gene Set	0.001583	84	0.02059	183	Genes regulated by ESR1 [Gene ID=2099] in MCF-7 cells (breast cancer).	www.broad.mit.e...
Broad CHIARETTI_T_ALL_RELAPSE_PROGNOSIS	View Gene Set	0.001578	12	0.02059	183	Genes whose expression predicted relapse in less than 2 years after chemotherapy for adult patients with T-ALL (T cell lymphoblastic leukemia).	www.broad.mit.e...
Broad CONCANNON_APOPTOSIS_BY_EPOXOMICIN_DN	View Gene Set	0.001643	163	0.02124	185	Genes down-regulated in SH-SY5Y cells (neuroblastoma) after treatment with epoxomicin [PubChem=3035402] a protease inhibitor causing apoptosis.	www.broad.mit.e...
Broad PUIFFE_INVASION_INHIBITED_BY_ASCITES_UP	View Gene Set	0.001744	78	0.02243	186	Genes up-regulated in OV-90 cells (ovarian cancer) exposed to ascites which inhibited invasion.	www.broad.mit.e...
Broad BENPORATH_ES_CORE_NINE_CORRELATED	View Gene Set	0.001862	100	0.02382	187	Breast cancer compendium: 100 transcription regulators showing most correlated expression with the 9 'embryonic stem cell' transcription factors that are preferentially and coordinately overexpressed in the high-grade ER-negative breast cancer tumors.	www.broad.mit.e...
Broad MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_15	View Gene Set	0.001924	11	0.02448	188	Amplification hot spot 15: colocalized fragile sites and cancer genes in the 6p25-p11.1 region.	www.broad.mit.e...
Broad ALCALAY_AML_BY_NPM1_LOCALIZATION_DN	View Gene Set	0.002009	179	0.02543	189	Genes changed in acute myeloid leukemia (AML) with respect to cellular localization of NPM1 [Gene ID=4869]: cytoplasmic vs. nucleolar.	www.broad.mit.e...
Broad KAAB_FAILED_HEART_ATRIUM_UP	View Gene Set	0.002164	36	0.02725	190	Genes up-regulated in atria of failing hearts (DCM and ICM) compared to healthy controls.	www.broad.mit.e...
Broad DAIRKEE_CANCER_PRONE_RESPONSE_BPA_E2	View Gene Set	0.002233	111	0.02797	191	'Cancer prone response profile' (CPRP): genes common to estradiol and bisphenol A [PubChem=5757 6623] response of epithelial cell cultures from patients at high risk of breast cancer.	www.broad.mit.e...
Broad BONOME_OVARIAN_CANCER_SURVIVAL_SUBOPTIMAL_DEBULKING	View Gene Set	0.002276	489	0.02835	192	Genes whose expression in suboptimally debulked ovarian tumors is associated with survival prognosis.	www.broad.mit.e...
Broad SASAKI_ADULT_T_CELL_LEUKEMIA	View Gene Set	0.002351	137	0.02901	193	Genes up-regulated in adult T-cell leukemia (ATL) cells compared to T lymphocytes from healthy controls.	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN	View Gene Set	0.002353	60	0.02901	193	Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701].	www.broad.mit.e...
Broad DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN	View Gene Set	0.002462	224	0.0302	195	Genes down-regulated in HEK293 cells (embryonic kidney) at 6 h 12 h or 24 h after infection with reovirus strain T3A (known as a strong inducer of apoptosis).	www.broad.mit.e...
Broad GRAHAM_CML_QUIESCENT_VS_NORMAL_QUIESCENT_UP	View Gene Set	0.002477	86	0.03023	196	Genes up-regulated in quiescent (G0) CD34+ [Gene ID=8842] cells isolated from peripheral blood of CML (chronic myeloid leukemia) patients compared to the quiescent cells from normal donors.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	View Gene Set	0.002501	681	0.03036	197	Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad BENPORATH_ES_CORE_NINE	View Gene Set	0.00296	9	0.03576	198	Set 'Core 9': 'embryonic stem cell' transcription regulators that are preferentially and coordinately overexpressed in the high-grade ER-negative breast cancer tumors.	www.broad.mit.e...
Broad MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN	View Gene Set	0.003066	255	0.03686	199	Genes down-regulated in non-apoptotic tissues (fetal liver) after MDM4 [Gene ID=4194] knockout.	www.broad.mit.e...
Broad MOOTHA_GLUCONEOGENESIS	View Gene Set	0.003095	32	0.03702	200	Genes involved in gluconeogenesis; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets.	www.broad.mit.e...

Gene Set Collection: Broad.c2.CP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad SA_REG_CASCADE_OF_CYCLIN_EXPR	View Gene Set	0.00075	13	0.03525	1	Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad BIOCARTA_MCM_PATHWAY	View Gene Set	5.991e-06	18	0.0013	1	CDK Regulation of DNA Replication	www.broad.mit.e...
Broad BIOCARTA_CELLCYCLE_PATHWAY	View Gene Set	0.0001123	23	0.01219	2	Cyclins and Cell Cycle Regulation	www.broad.mit.e...
Broad BIOCARTA_RANMS_PATHWAY	View Gene Set	0.0002331	10	0.01686	3	Role of Ran in mitotic spindle regulation	www.broad.mit.e...
Broad BIOCARTA_MPR_PATHWAY	View Gene Set	0.0003384	34	0.01836	4	How Progesterone Initiates Oocyte Membrane	www.broad.mit.e...
Broad BIOCARTA_ATRBRCA_PATHWAY	View Gene Set	0.0006097	21	0.02646	5	Role of BRCA1 BRCA2 and ATR in Cancer Susceptibility	www.broad.mit.e...
Broad BIOCARTA_G2_PATHWAY	View Gene Set	0.0009918	24	0.03075	6	Cell Cycle: G2/M Checkpoint	www.broad.mit.e...
Broad BIOCARTA_P53_PATHWAY	View Gene Set	0.0008931	16	0.03075	6	p53 Signaling Pathway	www.broad.mit.e...
Broad BIOCARTA_RB_PATHWAY	View Gene Set	0.001271	13	0.03448	8	RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KEGG_DNA_REPLICATION	View Gene Set	2.345e-13	36	4.361e-11	1	DNA replication	www.broad.mit.e...
Broad KEGG_CELL_CYCLE	View Gene Set	2.997e-10	128	2.787e-08	2	Cell cycle	www.broad.mit.e...
Broad KEGG_MISMATCH_REPAIR	View Gene Set	7.088e-07	23	4.394e-05	3	Mismatch repair	www.broad.mit.e...
Broad KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION	View Gene Set	2.006e-06	86	9.329e-05	4	Progesterone-mediated oocyte maturation	www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION	View Gene Set	2.967e-06	28	0.0001104	5	Homologous recombination	www.broad.mit.e...
Broad KEGG_OOCYTE_MEIOSIS	View Gene Set	2.607e-05	114	0.0008081	6	Oocyte meiosis	www.broad.mit.e...
Broad KEGG_BASE_EXCISION_REPAIR	View Gene Set	0.0004317	35	0.01147	7	Base excision repair	www.broad.mit.e...
Broad KEGG_PENTOSE_PHOSPHATE_PATHWAY	View Gene Set	0.0007996	27	0.01859	8	Pentose phosphate pathway	www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.001333	44	0.02754	9	Nucleotide excision repair	www.broad.mit.e...
Broad KEGG_PYRIMIDINE_METABOLISM	View Gene Set	0.002662	98	0.04952	10	Pyrimidine metabolism	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad REACTOME_DNA_STRAND_ELONGATION	View Gene Set	5.686e-16	31	2.445e-13	1	Genes involved in DNA strand elongation	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC	View Gene Set	7.393e-14	306	1.06e-11	2	Genes involved in Cell Cycle Mitotic	www.broad.mit.e...
Broad REACTOME_G2_M_CHECKPOINTS	View Gene Set	5.2e-14	43	1.06e-11	2	Genes involved in G2/M Checkpoints	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS	View Gene Set	5.189e-13	37	5.578e-11	4	Genes involved in Activation of ATR in response to replication stress	www.broad.mit.e...
Broad REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX	View Gene Set	9.31e-12	30	8.007e-10	5	Genes involved in Activation of the pre-replicative complex	www.broad.mit.e...
Broad REACTOME_LAGGING_STRAND_SYNTHESIS	View Gene Set	4.393e-11	20	3.148e-09	6	Genes involved in Lagging Strand Synthesis	www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES	View Gene Set	1.074e-09	28	6.598e-08	7	Genes involved in Extension of Telomeres	www.broad.mit.e...
Broad REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION	View Gene Set	1.559e-09	33	8.377e-08	8	Genes involved in E2F mediated regulation of DNA replication	www.broad.mit.e...
Broad REACTOME_MITOTIC_PROMETAPHASE	View Gene Set	4.768e-09	92	2.278e-07	9	Genes involved in Mitotic Prometaphase	www.broad.mit.e...
Broad REACTOME_E2F_TRANSCRIPTIONAL_TARGETS_AT_G1_S	View Gene Set	1.304e-08	22	5.607e-07	10	Genes involved in E2F transcriptional targets at G1/S	www.broad.mit.e...
Broad REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE	View Gene Set	2.761e-08	15	9.892e-07	11	Genes involved in Repair synthesis of patch ~27-30 bases long by DNA polymerase	www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE	View Gene Set	2.707e-08	77	9.892e-07	11	Genes involved in Telomere Maintenance	www.broad.mit.e...
Broad REACTOME_POLYMERASE_SWITCHING	View Gene Set	3.741e-08	14	1.238e-06	13	Genes involved in Polymerase switching	www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE	View Gene Set	1.203e-07	14	3.696e-06	14	Genes involved in Removal of the Flap Intermediate	www.broad.mit.e...
Broad REACTOME_DNA_REPAIR	View Gene Set	4.3e-07	102	1.233e-05	15	Genes involved in DNA Repair	www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	View Gene Set	5.691e-07	128	1.529e-05	16	Genes involved in Processing of Capped Intron-Containing Pre-mRNA	www.broad.mit.e...
Broad REACTOME_UNWINDING_OF_DNA	View Gene Set	1.334e-06	11	3.373e-05	17	Genes involved in Unwinding of DNA	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING	View Gene Set	2.107e-06	97	5.032e-05	18	Genes involved in mRNA Splicing	www.broad.mit.e...
Broad REACTOME_DOUBLE_STRAND_BREAK_REPAIR	View Gene Set	5.231e-06	21	0.0001184	19	Genes involved in Double-Strand Break Repair	www.broad.mit.e...
Broad REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE_FROM_THE_C_STRAND	View Gene Set	1.887e-05	10	0.0004057	20	Genes involved in Removal of the Flap Intermediate from the C-strand	www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER	View Gene Set	4.057e-05	33	0.0008308	21	Genes involved in Global Genomic NER (GG-NER)	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER	View Gene Set	7.175e-05	44	0.001402	22	Genes involved in Transcription-coupled NER (TC-NER)	www.broad.mit.e...
Broad REACTOME_CYCLIN_A1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION	View Gene Set	0.0001004	15	0.001805	23	Genes involved in Cyclin A1 associated events during G2/M transition	www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT	View Gene Set	0.0001007	142	0.001805	23	Genes involved in Formation and Maturation of mRNA Transcript	www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.0001156	49	0.001988	25	Genes involved in Nucleotide Excision Repair	www.broad.mit.e...
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS	View Gene Set	0.0001878	124	0.003106	26	Genes involved in Elongation and Processing of Capped Transcripts	www.broad.mit.e...
Broad REACTOME_FANCONI_ANEMIA_PATHWAY	View Gene Set	0.0002019	15	0.003216	27	Genes involved in Fanconi Anemia pathway	www.broad.mit.e...
Broad REACTOME_HOMOLOGOUS_RECOMBINATION_REPAIR	View Gene Set	0.0002229	15	0.003423	28	Genes involved in Homologous Recombination Repair	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING	View Gene Set	0.000292	59	0.00433	29	Genes involved in RNA Polymerase I Promoter Opening	www.broad.mit.e...
Broad REACTOME_PLC_GAMMA1_SIGNALLING	View Gene Set	0.0005045	35	0.007231	30	Genes involved in PLC-gamma1 signalling	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA	View Gene Set	0.0005583	95	0.007744	31	Genes involved in Metabolism of RNA	www.broad.mit.e...
Broad REACTOME_S_PHASE	View Gene Set	0.000604	103	0.007871	32	Genes involved in S Phase	www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES	View Gene Set	0.0005986	157	0.007871	32	Genes involved in Mitotic M-M/G1 phases	www.broad.mit.e...
Broad REACTOME_CAM_PATHWAY	View Gene Set	0.0006297	26	0.007964	34	Genes involved in CaM pathway	www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING	View Gene Set	0.001082	25	0.01292	35	Genes involved in mRNA 3-end processing	www.broad.mit.e...
Broad REACTOME_PYRIMIDINE_METABOLISM	View Gene Set	0.001063	22	0.01292	35	Genes involved in Pyrimidine metabolism	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_CARBOHYDRATES	View Gene Set	0.001461	119	0.01698	37	Genes involved in Metabolism of carbohydrates	www.broad.mit.e...
Broad REACTOME_EARLY_PHASE_OF_HIV_LIFE_CYCLE	View Gene Set	0.001535	13	0.01737	38	Genes involved in Early Phase of HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_FURTHER_PLATELET_RELEASATE	View Gene Set	0.002033	24	0.02241	39	Genes involved in Further platelet releasate	www.broad.mit.e...
Broad REACTOME_TRANSMEMBRANE_TRANSPORT_OF_SMALL_MOLECULES	View Gene Set	0.002353	218	0.0253	40	Genes involved in Transmembrane transport of small molecules	www.broad.mit.e...
Broad REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRON_CONTAINING_TRANSCRIPT	View Gene Set	0.002745	42	0.02879	41	Genes involved in Transport of Mature mRNA derived from an Intron-Containing Transcript	www.broad.mit.e...
Broad REACTOME_GLUCAGON_SIGNALING_IN_METABOLIC_REGULATION	View Gene Set	0.003006	34	0.03078	42	Genes involved in Glucagon signaling in metabolic regulation	www.broad.mit.e...
Broad REACTOME_HIV_LIFE_CYCLE	View Gene Set	0.003273	103	0.03273	43	Genes involved in HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION	View Gene Set	0.00349	84	0.0341	44	Genes involved in G2/M Transition	www.broad.mit.e...
Broad REACTOME_PKA_ACTIVATION	View Gene Set	0.003669	17	0.03506	45	Genes involved in PKA activation	www.broad.mit.e...
Broad REACTOME_PLC_BETA_MEDIATED_EVENTS	View Gene Set	0.003823	38	0.03574	46	Genes involved in PLC beta mediated events	www.broad.mit.e...
Broad REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS	View Gene Set	0.003948	54	0.03612	47	Genes involved in Golgi Associated Vesicle Biogenesis	www.broad.mit.e...
Broad REACTOME_G_ALPHA_Z_SIGNALLING_EVENTS	View Gene Set	0.005004	14	0.04482	48	Genes involved in G alpha (z) signalling events	www.broad.mit.e...
Broad REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING	View Gene Set	0.005441	61	0.04775	49	Genes involved in Clathrin derived vesicle budding	www.broad.mit.e...
Broad REACTOME_METAL_ION_SLC_TRANSPORTERS	View Gene Set	0.00557	23	0.0479	50	Genes involved in Metal ion SLC transporters	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad ACATTCC MIR-1 MIR-206	View Gene Set	4.55e-22	248	1.005e-19	1	Targets of MicroRNA ACATTCC MIR-1 MIR-206	www.broad.mit.e... MIR-1... MIR-206...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad V$E2F_Q6_01	View Gene Set	6.009e-16	167	3.695e-13	1	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKCGCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_03	View Gene Set	3.054e-13	171	9.391e-11	2	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q6	View Gene Set	4.561e-12	167	5.611e-10	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F_Q4_01	View Gene Set	3.879e-12	171	5.611e-10	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCSCGCSAAAN which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad SGCGSSAAA_V$E2F1DP2_01	View Gene Set	3.326e-12	122	5.611e-10	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SGCGSSAAA which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F_Q3	View Gene Set	4.497e-11	162	4.61e-09	6	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTCGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_Q4	View Gene Set	1.277e-10	166	1.122e-08	7	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1DP1_01	View Gene Set	2.542e-10	169	1.421e-08	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP2_01	View Gene Set	2.542e-10	169	1.421e-08	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSSCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F4DP2_01	View Gene Set	2.542e-10	169	1.421e-08	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTCSCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP2: transcription factor Dp-2 (E2F dimerization partner 2)	www.broad.mit.e...
Broad V$E2F1_Q6_01	View Gene Set	2.05e-10	177	1.421e-08	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F_Q6	View Gene Set	2.865e-10	165	1.468e-08	12	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGS. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F_02	View Gene Set	7.17e-10	169	3.392e-08	13	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F4DP1_01	View Gene Set	2.5e-09	174	1.098e-07	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1_Q4_01	View Gene Set	4.618e-09	167	1.894e-07	15	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F_Q3_01	View Gene Set	5.319e-09	171	2.045e-07	16	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGSG which matches annotation for E2F<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad GGGAGGRR_V$MAZ_Q6	View Gene Set	1.925e-08	1701	6.962e-07	17	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAGGRR which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor)	www.broad.mit.e...
Broad V$E2F1DP1RB_01	View Gene Set	3.272e-08	168	1.118e-06	18	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F1_Q3	View Gene Set	8.501e-08	176	2.752e-06	19	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NKTSSCGC which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F1_Q4	View Gene Set	1.199e-07	178	3.687e-06	20	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad KTGGYRSGAA_UNKNOWN	View Gene Set	4.152e-06	53	0.0001216	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KTGGYRSGAA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$MYCMAX_01	View Gene Set	5.719e-06	189	0.0001599	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNACCACGTGGTNN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$E2F_01	View Gene Set	6.595e-06	55	0.0001763	23	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TWSGCGCGAAAAYKR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad CCTNTMAGA_UNKNOWN	View Gene Set	8.042e-06	94	0.0002061	24	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CCTNTMAGA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q3_01	View Gene Set	1.132e-05	188	0.0002786	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTGGCGCGRAANNGNM which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$PAX4_01	View Gene Set	5.141e-05	201	0.001216	26	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NGNVGTCANGCGTGNNSNNYN which matches annotation for PAX4: paired box gene 4	www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6	View Gene Set	5.401e-05	2120	0.00123	27	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor	www.broad.mit.e...
Broad CTTTGT_V$LEF1_Q2	View Gene Set	6.348e-05	1458	0.001394	28	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CTTTGT which matches annotation for LEF1: lymphoid enhancer-binding factor 1	www.broad.mit.e...
Broad V$AP2_Q6_01	View Gene Set	7.757e-05	181	0.001645	29	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SNNNCCNCAGGCN which matches annotation for GTF3A: general transcription factor IIIA	www.broad.mit.e...
Broad GGGYGTGNY_UNKNOWN	View Gene Set	8.516e-05	487	0.001746	30	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GGGYGTGNY. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$SPZ1_01	View Gene Set	0.0001339	189	0.002657	31	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif DNNGGRGGGWWNNNN which matches annotation for SPZ1: spermatogenic leucine zipper 1	www.broad.mit.e...
Broad TGACCTY_V$ERR1_Q2	View Gene Set	0.0002348	772	0.004512	32	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGACCTY which matches annotation for ESRRA: estrogen-related receptor alpha	www.broad.mit.e...
Broad V$MYCMAX_B	View Gene Set	0.0002432	193	0.004533	33	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCAYGYGSN which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)<br> MAX: MYC associated factor X	www.broad.mit.e...
Broad V$YY1_Q6	View Gene Set	0.0002926	166	0.005293	34	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCATNTTN which matches annotation for YY1: YY1 transcription factor	www.broad.mit.e...
Broad GGGTGGRR_V$PAX4_03	View Gene Set	0.000333	994	0.00585	35	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGTGGRR which matches annotation for PAX4: paired box gene 4	www.broad.mit.e...
Broad CACGTG_V$MYC_Q2	View Gene Set	0.0003619	734	0.006182	36	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACGTG which matches annotation for MYC: v-myc myelocytomatosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad V$ARNT_02	View Gene Set	0.0004185	179	0.006956	37	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNNNRTCACGTGAYNNNNN which matches annotation for ARNT: aryl hydrocarbon receptor nuclear translocator	www.broad.mit.e...
Broad V$AHR_01	View Gene Set	0.0005405	52	0.008747	38	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CCYCNRRSTNGCGTGASA which matches annotation for AHR: aryl hydrocarbon receptor	www.broad.mit.e...
Broad V$MAZ_Q6	View Gene Set	0.0005707	135	0.009	39	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGGAGGG which matches annotation for MAZ: MYC-associated zinc finger protein (purine-binding transcription factor)	www.broad.mit.e...
Broad V$AP2_Q6	View Gene Set	0.0006766	188	0.0104	40	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MKCCCSCNGGCG which matches annotation for GTF3A: general transcription factor IIIA	www.broad.mit.e...
Broad V$MAX_01	View Gene Set	0.001407	194	0.0211	41	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNANCACGTGNTNN which matches annotation for MAX: MYC associated factor X	www.broad.mit.e...
Broad V$SREBP1_01	View Gene Set	0.001453	133	0.02128	42	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NATCACGTGAY which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1	www.broad.mit.e...
Broad GATTGGY_V$NFY_Q6_01	View Gene Set	0.001552	830	0.0222	43	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GATTGGY. Motif does not match any known transcription factor	www.broad.mit.e...
Broad RNGTGGGC_UNKNOWN	View Gene Set	0.001678	557	0.02346	44	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif RNGTGGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$HNF4_01	View Gene Set	0.001892	193	0.02479	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNRGGNCAAAGKTCANNN which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha	www.broad.mit.e...
Broad V$ZF5_B	View Gene Set	0.001935	184	0.02479	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NRNGNGCGCGCWN which matches annotation for ZFP161: zinc finger protein 161 homolog (mouse)	www.broad.mit.e...
Broad V$GABP_B	View Gene Set	0.001817	162	0.02479	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif VCCGGAAGNGCR which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2	www.broad.mit.e...
Broad V$HIF1_Q3	View Gene Set	0.001896	161	0.02479	45	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GNNKACGTGCGGNN which matches annotation for HIF1A: hypoxia-inducible factor 1 alpha subunit (basic helix-loop-helix transcription factor)	www.broad.mit.e...
Broad V$AP2GAMMA_01	View Gene Set	0.002194	177	0.02698	49	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCYNNGGS which matches annotation for TFAP2C: transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	www.broad.mit.e...
Broad V$SREBP1_Q6	View Gene Set	0.002177	195	0.02698	49	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CACSCCA which matches annotation for SREBF1: sterol regulatory element binding transcription factor 1	www.broad.mit.e...
Broad YGCGYRCGC_UNKNOWN	View Gene Set	0.002497	207	0.03011	51	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif YGCGYRCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$STAT6_01	View Gene Set	0.002736	194	0.03236	52	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NAWTTCCN which matches annotation for STAT6: signal transducer and activator of transcription 6 interleukin-4 induced	www.broad.mit.e...
Broad V$USF_Q6_01	View Gene Set	0.002882	168	0.03344	53	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NRCCACGTGASN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$COUP_01	View Gene Set	0.00324	188	0.0369	54	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAMCTTTGMMCYT which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha	www.broad.mit.e...
Broad V$STAT5A_03	View Gene Set	0.003763	191	0.04208	55	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NAWTTCYN which matches annotation for STAT5A: signal transducer and activator of transcription 5A	www.broad.mit.e...
Broad CCAWNWWNNNGGC_UNKNOWN	View Gene Set	0.00422	56	0.04611	56	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CCAWNWWNNNGGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$HIF1_Q5	View Gene Set	0.004274	176	0.04611	56	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGTACGTGCNGB which matches annotation for HIF1A: hypoxia-inducible factor 1 alpha subunit (basic helix-loop-helix transcription factor)	www.broad.mit.e...
Broad V$USF_Q6	View Gene Set	0.004518	178	0.04791	58	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif GYCACGTGNC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad MGGAAGTG_V$GABP_B	View Gene Set	0.004693	512	0.04892	59	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif MGGAAGTG which matches annotation for GABPA: GA binding protein transcription factor alpha subunit 60kDa<br> GABPB2: GA binding protein transcription factor beta subunit 2	www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad GNF2_CCNA2	View Gene Set	9.674e-33	62	4.131e-30	1	Neighborhood of CCNA2	www.broad.mit.e...
Broad GNF2_PCNA	View Gene Set	6.14e-32	62	1.311e-29	2	Neighborhood of PCNA	www.broad.mit.e...
Broad GNF2_SMC4L1	View Gene Set	1.281e-29	75	1.823e-27	3	Neighborhood of SMC4L1	www.broad.mit.e...
Broad GNF2_CENPF	View Gene Set	1.306e-28	56	1.394e-26	4	Neighborhood of CENPF	www.broad.mit.e...
Broad GNF2_RRM1	View Gene Set	1.244e-27	82	1.062e-25	5	Neighborhood of RRM1	www.broad.mit.e...
Broad GNF2_CDC2	View Gene Set	6.114e-27	56	3.95e-25	6	Neighborhood of CDC2	www.broad.mit.e...
Broad GNF2_CCNB2	View Gene Set	6.475e-27	53	3.95e-25	6	Neighborhood of CCNB2	www.broad.mit.e...
Broad GNF2_CDC20	View Gene Set	1.106e-26	52	5.902e-25	8	Neighborhood of CDC20	www.broad.mit.e...
Broad GNF2_MCM4	View Gene Set	2.192e-25	50	1.04e-23	9	Neighborhood of MCM4	www.broad.mit.e...
Broad GNF2_RFC4	View Gene Set	1.355e-24	57	5.785e-23	10	Neighborhood of RFC4	www.broad.mit.e...
Broad GNF2_HMMR	View Gene Set	1.142e-23	43	4.434e-22	11	Neighborhood of HMMR	www.broad.mit.e...
Broad GNF2_BUB1B	View Gene Set	8.264e-22	46	2.941e-20	12	Neighborhood of BUB1B	www.broad.mit.e...
Broad GNF2_RRM2	View Gene Set	3.528e-20	36	1.159e-18	13	Neighborhood of RRM2	www.broad.mit.e...
Broad GNF2_FEN1	View Gene Set	6.409e-20	49	1.955e-18	14	Neighborhood of FEN1	www.broad.mit.e...
Broad GNF2_CKS2	View Gene Set	9.038e-20	45	2.573e-18	15	Neighborhood of CKS2	www.broad.mit.e...
Broad GNF2_CENPE	View Gene Set	1.924e-19	37	5.134e-18	16	Neighborhood of CENPE	www.broad.mit.e...
Broad GNF2_ESPL1	View Gene Set	2.544e-19	35	6.391e-18	17	Neighborhood of ESPL1	www.broad.mit.e...
Broad GNF2_MCM5	View Gene Set	2.754e-19	51	6.534e-18	18	Neighborhood of MCM5	www.broad.mit.e...
Broad GNF2_TTK	View Gene Set	1.26e-17	34	2.832e-16	19	Neighborhood of TTK	www.broad.mit.e...
Broad GNF2_SMC2L1	View Gene Set	9.998e-17	30	2.135e-15	20	Neighborhood of SMC2L1	www.broad.mit.e...
Broad GNF2_RFC3	View Gene Set	4.677e-16	38	9.51e-15	21	Neighborhood of RFC3	www.broad.mit.e...
Broad GNF2_H2AFX	View Gene Set	5.981e-15	28	1.161e-13	22	Neighborhood of H2AFX	www.broad.mit.e...
Broad GNF2_BUB1	View Gene Set	1.007e-14	25	1.869e-13	23	Neighborhood of BUB1	www.broad.mit.e...
Broad GNF2_MKI67	View Gene Set	6.535e-14	26	1.163e-12	24	Neighborhood of MKI67	www.broad.mit.e...
Broad MORF_GNB1	View Gene Set	1.2e-13	276	2.05e-12	25	Neighborhood of GNB1	www.broad.mit.e...
Broad GNF2_CKS1B	View Gene Set	1.437e-13	36	2.36e-12	26	Neighborhood of CKS1B	www.broad.mit.e...
Broad MORF_DNMT1	View Gene Set	1.492e-12	105	2.359e-11	27	Neighborhood of DNMT1	www.broad.mit.e...
Broad MORF_RRM1	View Gene Set	3.039e-12	90	4.634e-11	28	Neighborhood of RRM1	www.broad.mit.e...
Broad MORF_RFC4	View Gene Set	1.056e-11	137	1.555e-10	29	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_BUB1B	View Gene Set	1.197e-11	61	1.704e-10	30	Neighborhood of BUB1B	www.broad.mit.e...
Broad MORF_PPP1CC	View Gene Set	2.234e-11	150	3.077e-10	31	Neighborhood of PPP1CC	www.broad.mit.e...
Broad MORF_BUB3	View Gene Set	3.45e-11	256	4.603e-10	32	Neighborhood of BUB3	www.broad.mit.e...
Broad GNF2_MSH2	View Gene Set	7.237e-11	26	9.364e-10	33	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_ESPL1	View Gene Set	3.38e-10	58	4.245e-09	34	Neighborhood of ESPL1	www.broad.mit.e...
Broad GNF2_DEK	View Gene Set	9.656e-10	45	1.178e-08	35	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_RPA2	View Gene Set	2.653e-09	170	3.147e-08	36	Neighborhood of RPA2	www.broad.mit.e...
Broad GNF2_HAT1	View Gene Set	3.883e-09	45	4.482e-08	37	Neighborhood of HAT1	www.broad.mit.e...
Broad MORF_PCNA	View Gene Set	6.023e-09	71	6.768e-08	38	Neighborhood of PCNA	www.broad.mit.e...
Broad MORF_PRKDC	View Gene Set	1.25e-08	173	1.369e-07	39	Neighborhood of PRKDC	www.broad.mit.e...
Broad GNF2_ANP32B	View Gene Set	3.113e-08	29	3.25e-07	40	Neighborhood of ANP32B	www.broad.mit.e...
Broad GNF2_PA2G4	View Gene Set	3.12e-08	73	3.25e-07	40	Neighborhood of PA2G4	www.broad.mit.e...
Broad MORF_XRCC5	View Gene Set	5.381e-08	210	5.47e-07	42	Neighborhood of XRCC5	www.broad.mit.e...
Broad GNF2_APEX1	View Gene Set	8.249e-08	72	8.191e-07	43	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_HDAC2	View Gene Set	1.077e-07	256	1.045e-06	44	Neighborhood of HDAC2	www.broad.mit.e...
Broad MORF_RAD23A	View Gene Set	1.513e-07	316	1.436e-06	45	Neighborhood of RAD23A	www.broad.mit.e...
Broad MORF_BUB1	View Gene Set	2.379e-07	49	2.208e-06	46	Neighborhood of BUB1	www.broad.mit.e...
Broad MORF_CDK2	View Gene Set	4.545e-07	63	4.129e-06	47	Neighborhood of CDK2	www.broad.mit.e...
Broad MORF_EIF3S2	View Gene Set	5.087e-07	220	4.525e-06	48	Neighborhood of EIF3S2	www.broad.mit.e...
Broad GNF2_RPA1	View Gene Set	6.69e-07	20	5.83e-06	49	Neighborhood of RPA1	www.broad.mit.e...
Broad MORF_SMC1L1	View Gene Set	1.008e-06	47	8.609e-06	50	Neighborhood of SMC1L1	www.broad.mit.e...
Broad MORF_DEK	View Gene Set	2.003e-06	229	1.677e-05	51	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_DDB1	View Gene Set	2.692e-06	220	2.211e-05	52	Neighborhood of DDB1	www.broad.mit.e...
Broad GNF2_MLH1	View Gene Set	3.288e-06	36	2.649e-05	53	Neighborhood of MLH1	www.broad.mit.e...
Broad MORF_HDAC1	View Gene Set	4.543e-06	222	3.592e-05	54	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_FBL	View Gene Set	4.753e-06	121	3.69e-05	55	Neighborhood of FBL	www.broad.mit.e...
Broad GCM_CBFB	View Gene Set	5.459e-06	59	4.163e-05	56	Neighborhood of CBFB	www.broad.mit.e...
Broad MORF_NPM1	View Gene Set	6.767e-06	152	5.069e-05	57	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_UBE2I	View Gene Set	8.615e-06	208	6.343e-05	58	Neighborhood of UBE2I	www.broad.mit.e...
Broad GCM_ANP32B	View Gene Set	1.045e-05	32	7.566e-05	59	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_ACP1	View Gene Set	1.094e-05	178	7.785e-05	60	Neighborhood of ACP1	www.broad.mit.e...
Broad MORF_ANP32B	View Gene Set	1.571e-05	174	0.00011	61	Neighborhood of ANP32B	www.broad.mit.e...
Broad GNF2_SMC1L1	View Gene Set	1.743e-05	24	0.00012	62	Neighborhood of SMC1L1	www.broad.mit.e...
Broad MORF_RAC1	View Gene Set	1.862e-05	196	0.0001262	63	Neighborhood of RAC1	www.broad.mit.e...
Broad MORF_RAD54L	View Gene Set	2.534e-05	94	0.0001691	64	Neighborhood of RAD54L	www.broad.mit.e...
Broad MORF_ACTG1	View Gene Set	2.807e-05	134	0.0001844	65	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_G22P1	View Gene Set	2.967e-05	145	0.0001919	66	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_PHB	View Gene Set	3.057e-05	112	0.0001919	66	Neighborhood of PHB	www.broad.mit.e...
Broad GCM_APEX1	View Gene Set	3.035e-05	102	0.0001919	66	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_FEN1	View Gene Set	4.147e-05	58	0.0002567	69	Neighborhood of FEN1	www.broad.mit.e...
Broad GNF2_TDG	View Gene Set	4.297e-05	23	0.0002621	70	Neighborhood of TDG	www.broad.mit.e...
Broad GCM_CSNK2B	View Gene Set	5.211e-05	88	0.0003134	71	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_AATF	View Gene Set	5.97e-05	179	0.000354	72	Neighborhood of AATF	www.broad.mit.e...
Broad MORF_CCNI	View Gene Set	0.0001424	76	0.0008327	73	Neighborhood of CCNI	www.broad.mit.e...
Broad GCM_RAF1	View Gene Set	0.0001774	34	0.001024	74	Neighborhood of RAF1	www.broad.mit.e...
Broad GNF2_MSH6	View Gene Set	0.0001884	30	0.001073	75	Neighborhood of MSH6	www.broad.mit.e...
Broad GCM_MSN	View Gene Set	0.0001936	24	0.001088	76	Neighborhood of MSN	www.broad.mit.e...
Broad MORF_MTA1	View Gene Set	0.0002064	95	0.001145	77	Neighborhood of MTA1	www.broad.mit.e...
Broad MORF_SS18	View Gene Set	0.0002504	55	0.001371	78	Neighborhood of SS18	www.broad.mit.e...
Broad MORF_EIF4A2	View Gene Set	0.0002606	120	0.001408	79	Neighborhood of EIF4A2	www.broad.mit.e...
Broad MORF_HAT1	View Gene Set	0.0002691	155	0.001437	80	Neighborhood of HAT1	www.broad.mit.e...
Broad MORF_MSH2	View Gene Set	0.0003563	52	0.001878	81	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_PAPSS1	View Gene Set	0.0004381	98	0.002282	82	Neighborhood of PAPSS1	www.broad.mit.e...
Broad MORF_CDC10	View Gene Set	0.0005063	120	0.002574	83	Neighborhood of CDC10	www.broad.mit.e...
Broad MORF_PRKAG1	View Gene Set	0.0005063	202	0.002574	83	Neighborhood of PRKAG1	www.broad.mit.e...
Broad MORF_HEAB	View Gene Set	0.0005557	71	0.002792	85	Neighborhood of HEAB	www.broad.mit.e...
Broad MORF_TERF1	View Gene Set	0.0006756	57	0.003316	86	Neighborhood of TERF1	www.broad.mit.e...
Broad GCM_HDAC1	View Gene Set	0.0006717	30	0.003316	86	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_RPA1	View Gene Set	0.0007895	55	0.003831	88	Neighborhood of RPA1	www.broad.mit.e...
Broad MORF_BMI1	View Gene Set	0.0009027	71	0.004331	89	Neighborhood of BMI1	www.broad.mit.e...
Broad GCM_CASP2	View Gene Set	0.0009225	21	0.004377	90	Neighborhood of CASP2	www.broad.mit.e...
Broad GCM_AIP	View Gene Set	0.001043	36	0.004892	91	Neighborhood of AIP	www.broad.mit.e...
Broad MORF_USP5	View Gene Set	0.001064	46	0.004938	92	Neighborhood of USP5	www.broad.mit.e...
Broad GCM_ACTG1	View Gene Set	0.001117	113	0.005127	93	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_BCL2	View Gene Set	0.001571	202	0.007132	94	Neighborhood of BCL2	www.broad.mit.e...
Broad MORF_ORC1L	View Gene Set	0.001587	61	0.007132	94	Neighborhood of ORC1L	www.broad.mit.e...
Broad GCM_RAD21	View Gene Set	0.001696	30	0.007543	96	Neighborhood of RAD21	www.broad.mit.e...
Broad MORF_TNFRSF25	View Gene Set	0.001721	242	0.007575	97	Neighborhood of TNFRSF25	www.broad.mit.e...
Broad GNF2_BUB3	View Gene Set	0.001791	22	0.007805	98	Neighborhood of BUB3	www.broad.mit.e...
Broad MORF_MYC	View Gene Set	0.001897	71	0.008153	99	Neighborhood of MYC	www.broad.mit.e...
Broad GCM_DDX5	View Gene Set	0.001909	52	0.008153	99	Neighborhood of DDX5	www.broad.mit.e...
Broad GCM_RING1	View Gene Set	0.002342	106	0.009902	101	Neighborhood of RING1	www.broad.mit.e...
Broad MORF_FANCG	View Gene Set	0.002368	148	0.009914	102	Neighborhood of FANCG	www.broad.mit.e...
Broad GCM_PSME1	View Gene Set	0.002514	76	0.01042	103	Neighborhood of PSME1	www.broad.mit.e...
Broad GNF2_RAN	View Gene Set	0.003583	78	0.01471	104	Neighborhood of RAN	www.broad.mit.e...
Broad MORF_EI24	View Gene Set	0.003937	136	0.01601	105	Neighborhood of EI24	www.broad.mit.e...
Broad MORF_MT4	View Gene Set	0.004272	218	0.01715	106	Neighborhood of MT4	www.broad.mit.e...
Broad GCM_PFN1	View Gene Set	0.004298	47	0.01715	106	Neighborhood of PFN1	www.broad.mit.e...
Broad MORF_RAN	View Gene Set	0.004763	242	0.01866	108	Neighborhood of RAN	www.broad.mit.e...
Broad GNF2_FBL	View Gene Set	0.004753	119	0.01866	108	Neighborhood of FBL	www.broad.mit.e...
Broad MORF_CTBP1	View Gene Set	0.004978	149	0.01932	110	Neighborhood of CTBP1	www.broad.mit.e...
Broad MORF_FDXR	View Gene Set	0.005468	205	0.02104	111	Neighborhood of FDXR	www.broad.mit.e...
Broad MORF_CSNK2B	View Gene Set	0.005591	256	0.02114	112	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_LTK	View Gene Set	0.005595	133	0.02114	112	Neighborhood of LTK	www.broad.mit.e...
Broad MORF_UBE2N	View Gene Set	0.006535	79	0.02448	114	Neighborhood of UBE2N	www.broad.mit.e...
Broad MORF_RAB1A	View Gene Set	0.006839	179	0.02539	115	Neighborhood of RAB1A	www.broad.mit.e...
Broad MORF_DAP3	View Gene Set	0.007249	175	0.02669	116	Neighborhood of DAP3	www.broad.mit.e...
Broad MORF_RBBP8	View Gene Set	0.007501	190	0.02731	117	Neighborhood of RBBP8	www.broad.mit.e...
Broad GCM_NPM1	View Gene Set	0.00761	108	0.02731	117	Neighborhood of NPM1	www.broad.mit.e...
Broad GCM_PPP1CC	View Gene Set	0.007581	47	0.02731	117	Neighborhood of PPP1CC	www.broad.mit.e...
Broad MORF_CDC2L5	View Gene Set	0.008788	127	0.03127	120	Neighborhood of CDC2L5	www.broad.mit.e...
Broad MORF_CDC16	View Gene Set	0.008936	67	0.03128	121	Neighborhood of CDC16	www.broad.mit.e...
Broad MORF_PTPN11	View Gene Set	0.008898	93	0.03128	121	Neighborhood of PTPN11	www.broad.mit.e...
Broad MORF_SOD1	View Gene Set	0.01004	247	0.03468	123	Neighborhood of SOD1	www.broad.mit.e...
Broad MORF_AP2M1	View Gene Set	0.01007	197	0.03468	123	Neighborhood of AP2M1	www.broad.mit.e...
Broad MORF_STK17A	View Gene Set	0.01228	155	0.04195	125	Neighborhood of STK17A	www.broad.mit.e...
Broad MORF_TPT1	View Gene Set	0.01253	100	0.04248	126	Neighborhood of TPT1	www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad module_54	View Gene Set	3.932e-43	242	1.785e-40	1	Genes in module_54	www.broad.mit.e...
Broad module_198	View Gene Set	9.474e-24	288	2.151e-21	2	Genes in module_198	www.broad.mit.e...
Broad module_98	View Gene Set	1.169e-20	375	1.769e-18	3	Genes in module_98	www.broad.mit.e...
Broad module_252	View Gene Set	2.886e-20	224	3.275e-18	4	Genes in module_252	www.broad.mit.e...
Broad module_125	View Gene Set	6.973e-20	42	5.366e-18	5	Genes in module_125	www.broad.mit.e...
Broad module_158	View Gene Set	7.092e-20	41	5.366e-18	5	Genes in module_158	www.broad.mit.e...
Broad module_57	View Gene Set	2.89e-15	54	1.874e-13	7	Genes in module_57	www.broad.mit.e...
Broad module_53	View Gene Set	4.37e-14	389	2.48e-12	8	Genes in module_53	www.broad.mit.e...
Broad module_403	View Gene Set	1.776e-13	44	8.958e-12	9	Genes in module_403	www.broad.mit.e...
Broad module_18	View Gene Set	1.66e-12	434	7.537e-11	10	Genes in module_18	www.broad.mit.e...
Broad module_118	View Gene Set	1.706e-11	393	7.042e-10	11	Genes in module_118	www.broad.mit.e...
Broad module_244	View Gene Set	8.707e-10	182	3.294e-08	12	Genes in module_244	www.broad.mit.e...
Broad module_3	View Gene Set	2.712e-09	374	9.47e-08	13	Genes in module_3	www.broad.mit.e...
Broad module_16	View Gene Set	8.856e-09	495	2.872e-07	14	Genes in module_16	www.broad.mit.e...
Broad module_126	View Gene Set	1.446e-08	173	4.375e-07	15	Genes in module_126	www.broad.mit.e...
Broad module_124	View Gene Set	3.082e-07	92	8.745e-06	16	Genes in module_124	www.broad.mit.e...
Broad module_320	View Gene Set	5.445e-07	19	1.454e-05	17	Genes in module_320	www.broad.mit.e...
Broad module_52	View Gene Set	9.065e-07	415	2.286e-05	18	Genes in module_52	www.broad.mit.e...
Broad module_197	View Gene Set	1.287e-06	170	3.013e-05	19	Genes in module_197	www.broad.mit.e...
Broad module_451	View Gene Set	1.328e-06	29	3.013e-05	19	Genes in module_451	www.broad.mit.e...
Broad module_315	View Gene Set	2.945e-06	15	6.367e-05	21	Genes in module_315	www.broad.mit.e...
Broad module_308	View Gene Set	8.647e-06	66	0.0001784	22	Genes in module_308	www.broad.mit.e...
Broad module_8	View Gene Set	3.534e-05	403	0.0006976	23	Genes in module_8	www.broad.mit.e...
Broad module_17	View Gene Set	5.071e-05	351	0.0009592	24	Genes in module_17	www.broad.mit.e...
Broad module_397	View Gene Set	5.888e-05	114	0.001069	25	Genes in module_397	www.broad.mit.e...
Broad module_283	View Gene Set	6.875e-05	7	0.0012	26	Genes in module_283	www.broad.mit.e...
Broad module_222	View Gene Set	0.0002392	22	0.004022	27	Genes in module_222	www.broad.mit.e...
Broad module_168	View Gene Set	0.0003083	22	0.004999	28	Genes in module_168	www.broad.mit.e...
Broad module_318	View Gene Set	0.0003339	28	0.005228	29	Genes in module_318	www.broad.mit.e...
Broad module_127	View Gene Set	0.0006662	26	0.01008	30	Genes in module_127	www.broad.mit.e...
Broad module_32	View Gene Set	0.00133	227	0.01948	31	Genes in module_32	www.broad.mit.e...
Broad module_392	View Gene Set	0.0025	18	0.03547	32	Genes in module_392	www.broad.mit.e...
Broad module_552	View Gene Set	0.002643	18	0.03636	33	Genes in module_552	www.broad.mit.e...
Broad module_257	View Gene Set	0.003101	137	0.04141	34	Genes in module_257	www.broad.mit.e...
Broad module_189	View Gene Set	0.003371	23	0.04373	35	Genes in module_189	www.broad.mit.e...
Broad module_430	View Gene Set	0.003549	51	0.04475	36	Genes in module_430	www.broad.mit.e...
Broad module_183	View Gene Set	0.003829	52	0.04699	37	Genes in module_183	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad DNA_METABOLIC_PROCESS	View Gene Set	1.092e-09	253	9.006e-07	1	Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides.	www.broad.mit.e...
Broad DNA_REPLICATION	View Gene Set	2.486e-09	101	1.025e-06	2	Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.	www.broad.mit.e...
Broad CELL_CYCLE_GO_0007049	View Gene Set	7.917e-08	304	2.177e-05	3	Genes annotated by the GO term GO:0007049. The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.	www.broad.mit.e...
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	2.296e-07	1197	4.736e-05	4	Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS	View Gene Set	3.047e-07	1623	5.028e-05	5	Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad DNA_DEPENDENT_DNA_REPLICATION	View Gene Set	1.231e-06	55	0.0001692	6	Genes annotated by the GO term GO:0006261. The process whereby new strands of DNA are synthesized using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.	www.broad.mit.e...
Broad CELL_CYCLE_PROCESS	View Gene Set	1.595e-06	187	0.000188	7	Genes annotated by the GO term GO:0022402. A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad CHROMOSOME_ORGANIZATION_AND_BIOGENESIS	View Gene Set	5.711e-06	117	0.000589	8	Genes annotated by the GO term GO:0051276. A process that is carried out at the cellular level that results in the formation arrangement of constituent parts or disassembly of chromosomes structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.	www.broad.mit.e...
Broad M_PHASE	View Gene Set	7.423e-06	111	0.0006804	9	Genes annotated by the GO term GO:0000279. Progression through M phase the part of the cell cycle comprising nuclear division.	www.broad.mit.e...
Broad SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	1.227e-05	10	0.001012	10	Genes annotated by the GO term GO:0007051. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the spindle the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart.	www.broad.mit.e...
Broad DNA_REPAIR	View Gene Set	1.696e-05	123	0.001272	11	Genes annotated by the GO term GO:0006281. The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations chemical mutagens fungal and bacterial toxins etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal base excision repair nucleotide excision repair photoreactivation bypass double-strand break repair pathway and mismatch repair pathway.	www.broad.mit.e...
Broad MITOTIC_SPINDLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	1.918e-05	9	0.001318	12	Genes annotated by the GO term GO:0007052. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of the microtubule spindle during a mitotic cell cycle.	www.broad.mit.e...
Broad CELL_CYCLE_CHECKPOINT_GO_0000075	View Gene Set	2.498e-05	47	0.001585	13	Genes annotated by the GO term GO:0000075. A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage.	www.broad.mit.e...
Broad CELL_CYCLE_PHASE	View Gene Set	2.794e-05	167	0.001646	14	Genes annotated by the GO term GO:0022403. A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events.	www.broad.mit.e...
Broad REGULATION_OF_DNA_REPLICATION	View Gene Set	4.708e-05	19	0.002589	15	Genes annotated by the GO term GO:0006275. Any process that modulates the frequency rate or extent of DNA replication.	www.broad.mit.e...
Broad SISTER_CHROMATID_SEGREGATION	View Gene Set	6.51e-05	17	0.003356	16	Genes annotated by the GO term GO:0000819. The process by which sister chromatids are organized and then physically separated and apportioned to two or more sets.	www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON_ORGANIZATION_AND_BIOGENESIS	View Gene Set	7.401e-05	34	0.003592	17	Genes annotated by the GO term GO:0000226. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.	www.broad.mit.e...
Broad RESPONSE_TO_DNA_DAMAGE_STIMULUS	View Gene Set	8.486e-05	159	0.003889	18	Genes annotated by the GO term GO:0006974. A change in state or activity of a cell or an organism (in terms of movement secretion enzyme production gene expression etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.	www.broad.mit.e...
Broad MITOTIC_CELL_CYCLE	View Gene Set	0.0001036	148	0.004498	19	Genes annotated by the GO term GO:0000278. Progression through the phases of the mitotic cell cycle the most common eukaryotic cell cycle which canonically comprises four successive phases called G1 S G2 and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division or G1 and G2 phases may be absent.	www.broad.mit.e...
Broad MITOSIS	View Gene Set	0.0001225	81	0.005053	20	Genes annotated by the GO term GO:0007067. Progression through mitosis the division of the eukaryotic cell nucleus to produce two daughter nuclei that usually contain the identical chromosome complement to their mother.	www.broad.mit.e...
Broad M_PHASE_OF_MITOTIC_CELL_CYCLE	View Gene Set	0.000153	83	0.00601	21	Genes annotated by the GO term GO:0000087. Progression through M phase the part of the mitotic cell cycle during which mitosis takes place.	www.broad.mit.e...
Broad MITOTIC_SISTER_CHROMATID_SEGREGATION	View Gene Set	0.0001684	16	0.006039	22	Genes annotated by the GO term GO:0000070. The cell cycle process whereby replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome composed of two sister chromatids aligns at the cell equator paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.	www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	0.0001684	601	0.006039	22	Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	0.0001893	767	0.006508	24	Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad REGULATION_OF_CELL_CYCLE	View Gene Set	0.0002468	176	0.008145	25	Genes annotated by the GO term GO:0051726. Any process that modulates the rate or extent of progression through the cell cycle.	www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS	View Gene Set	0.0003046	779	0.009664	26	Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism.	www.broad.mit.e...
Broad CHROMOSOME_SEGREGATION	View Gene Set	0.0003445	31	0.01053	27	Genes annotated by the GO term GO:0007059. The process by which genetic material in the form of chromosomes is organized and then physically separated and apportioned to two or more sets.	www.broad.mit.e...
Broad REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.0004819	285	0.0142	28	Genes annotated by the GO term GO:0006357. Any process that modulates the frequency rate or extent of transcription from an RNA polymerase II promoter.	www.broad.mit.e...
Broad DNA_REPLICATION_INITIATION	View Gene Set	0.0005571	15	0.01585	29	Genes annotated by the GO term GO:0006270. The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix the recruitment of DNA polymerases and the initiation of polymerase action.	www.broad.mit.e...
Broad RECEPTOR_MEDIATED_ENDOCYTOSIS	View Gene Set	0.0005919	33	0.01628	30	Genes annotated by the GO term GO:0006898. The uptake of external materials by cells utilizing receptors to ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.	www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS	View Gene Set	0.0008622	801	0.02295	31	Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_DNA_METABOLIC_PROCESS	View Gene Set	0.001264	17	0.03258	32	Genes annotated by the GO term GO:0051053. Any process that stops prevents or reduces the frequency rate or extent of the chemical reactions and pathways involving DNA.	www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	0.001607	222	0.04017	33	Genes annotated by the GO term GO:0031325. Any process that activates or increases the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.001757	458	0.04237	34	Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell.	www.broad.mit.e...
Broad STRESS_ACTIVATED_PROTEIN_KINASE_SIGNALING_PATHWAY	View Gene Set	0.001798	49	0.04237	34	Genes annotated by the GO term GO:0031098. A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_DNA_REPLICATION	View Gene Set	0.001863	12	0.04269	36	Genes annotated by the GO term GO:0008156. Any process that stops prevents or reduces the frequency rate or extent of DNA replication.	www.broad.mit.e...
Broad RNA_BIOSYNTHETIC_PROCESS	View Gene Set	0.002087	625	0.0453	37	Genes annotated by the GO term GO:0032774. The chemical reactions and pathways resulting in the formation of RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.	www.broad.mit.e...
Broad TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER	View Gene Set	0.002041	449	0.0453	37	Genes annotated by the GO term GO:0006366. The synthesis of RNA from a DNA template by RNA polymerase II (Pol II) originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).	www.broad.mit.e...
Broad REGULATION_OF_DNA_METABOLIC_PROCESS	View Gene Set	0.002203	44	0.04533	39	Genes annotated by the GO term GO:0051052. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving DNA.	www.broad.mit.e...
Broad TRANSCRIPTION	View Gene Set	0.002252	738	0.04533	39	Genes annotated by the GO term GO:0006350. The synthesis of either RNA on a template of DNA or DNA on a template of RNA.	www.broad.mit.e...
Broad REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	0.002278	457	0.04533	39	Genes annotated by the GO term GO:0051252. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad CHROMATIN_MODIFICATION	View Gene Set	0.002308	50	0.04533	39	Genes annotated by the GO term GO:0016568. The alteration of DNA or protein in chromatin which may result in changing the chromatin structure.	www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad CHROMOSOMAL_PART	View Gene Set	4.339e-13	95	1.011e-10	1	Genes annotated by the GO term GO:0044427. Any constituent part of a chromosome a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad CHROMOSOME	View Gene Set	9.45e-13	122	1.101e-10	2	Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad REPLICATION_FORK	View Gene Set	6.896e-08	18	5.356e-06	3	Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad NUCLEUS	View Gene Set	1.262e-07	1353	7.354e-06	4	Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent.	www.broad.mit.e...
Broad NUCLEAR_PART	View Gene Set	5.441e-06	543	0.0002535	5	Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	www.broad.mit.e...
Broad ORGANELLE_PART	View Gene Set	2.307e-05	1149	0.000768	6	Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART	View Gene Set	2.056e-05	1144	0.000768	6	Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad CHROMATIN	View Gene Set	3.205e-05	35	0.0009336	8	Genes annotated by the GO term GO:0000785. The ordered and organized complex of DNA and protein that forms the chromosome.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME	View Gene Set	6.863e-05	53	0.001483	9	Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	7.638e-05	613	0.001483	9	Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	7.638e-05	613	0.001483	9	Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX	View Gene Set	6.159e-05	914	0.001483	9	Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together.	www.broad.mit.e...
Broad NUCLEOPLASM_PART	View Gene Set	9.829e-05	202	0.001762	13	Genes annotated by the GO term GO:0044451. Any constituent part of the nucleoplasm that part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad NUCLEOPLASM	View Gene Set	0.0001222	266	0.001899	14	Genes annotated by the GO term GO:0005654. That part of the nuclear content other than the chromosomes or the nucleolus.	www.broad.mit.e...
Broad CONDENSED_CHROMOSOME	View Gene Set	0.0001207	32	0.001899	14	Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.	www.broad.mit.e...
Broad CHROMOSOMEPERICENTRIC_REGION	View Gene Set	0.0002029	31	0.002878	16	Genes annotated by the GO term GO:0000775. The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes this region corresponds to a single area of the chromosome whereas in holocentric chromosomes it is evenly distributed along the chromosome.	www.broad.mit.e...
Broad PROTEIN_COMPLEX	View Gene Set	0.00021	799	0.002878	16	Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	0.0003696	9	0.004785	18	Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART	View Gene Set	0.0004384	33	0.005376	19	Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad PLASMA_MEMBRANE	View Gene Set	0.0006602	1392	0.007692	20	Genes annotated by the GO term GO:0005886. The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.	www.broad.mit.e...
Broad INTRINSIC_TO_PLASMA_MEMBRANE	View Gene Set	0.0007296	978	0.008095	21	Genes annotated by the GO term GO:0031226. Located in the plasma membrane such that some covalently attached portion of the gene product for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor spans or is embedded in one or both leaflets of the membrane.	www.broad.mit.e...
Broad INTEGRAL_TO_PLASMA_MEMBRANE	View Gene Set	0.0009418	964	0.009974	22	Genes annotated by the GO term GO:0005887. Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.	www.broad.mit.e...
Broad NUCLEAR_REPLICATION_FORK	View Gene Set	0.001178	10	0.01162	23	Genes annotated by the GO term GO:0043596. The Y-shaped region of a nuclear replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad PLASMA_MEMBRANE_PART	View Gene Set	0.001197	1142	0.01162	23	Genes annotated by the GO term GO:0044459. Any constituent part of the plasma membrane the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.	www.broad.mit.e...
Broad TRANSCRIPTION_FACTOR_COMPLEX	View Gene Set	0.002601	84	0.02424	25	Genes annotated by the GO term GO:0005667. Any complex distinct from RNA polymerase including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences and regulating transcription.	www.broad.mit.e...
Broad KINETOCHORE	View Gene Set	0.004956	25	0.04441	26	Genes annotated by the GO term GO:0000776. A multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules.	www.broad.mit.e...
Broad VOLTAGE_GATED_POTASSIUM_CHANNEL_COMPLEX	View Gene Set	0.005664	40	0.04888	27	Genes annotated by the GO term GO:0008076. A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad CHROMATIN_BINDING	View Gene Set	3.475e-06	32	0.001376	1	Genes annotated by the GO term GO:0003682. Interacting selectively with chromatin the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase.	www.broad.mit.e...
Broad PROTEIN_C_TERMINUS_BINDING	View Gene Set	6.396e-05	73	0.01266	2	Genes annotated by the GO term GO:0008022. Interacting selectively with a protein C-terminus the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.	www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING	View Gene Set	0.0001245	34	0.01367	3	Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA.	www.broad.mit.e...
Broad DNA_DEPENDENT_ATPASE_ACTIVITY	View Gene Set	0.0001573	22	0.01367	3	Genes annotated by the GO term GO:0008094. Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of single- or double-stranded DNA; drives another reaction.	www.broad.mit.e...
Broad DNA_BINDING	View Gene Set	0.0001726	587	0.01367	3	Genes annotated by the GO term GO:0003677. Interacting selectively with DNA (deoxyribonucleic acid).	www.broad.mit.e...
Broad RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_ACTIVITY	View Gene Set	0.0007065	182	0.04663	6	Genes annotated by the GO term GO:0003702. Functions to initiate or regulate RNA polymerase II transcription.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
PMID 12791985	View Gene Set	5.189e-13	37	1.301e-09	1	Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes.	www.ncbi.nlm.ni...
PMID 19237606	View Gene Set	4.997e-09	84	6.264e-06	2	Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk.	www.ncbi.nlm.ni...
PMID 15232106	View Gene Set	1.048e-08	30	6.567e-06	3	Self-assembling protein microarrays.	www.ncbi.nlm.ni...
PMID 9111189	View Gene Set	8.412e-09	16	6.567e-06	3	Which DNA polymerases are used for DNA-repair in eukaryotes?	www.ncbi.nlm.ni...
PMID 20508983	View Gene Set	2.242e-08	102	1.124e-05	5	Centrosome-related genes genetic variation and risk of breast cancer.	www.ncbi.nlm.ni...
PMID 15782174	View Gene Set	7.727e-08	31	3.229e-05	6	Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.	www.ncbi.nlm.ni...
PMID 17289661	View Gene Set	1.07e-07	35	3.831e-05	7	Molecular composition of IMP1 ribonucleoprotein granules.	www.ncbi.nlm.ni...
PMID 15707391	View Gene Set	1.288e-07	23	4.038e-05	8	DNA-dependent phosphorylation of Chk1 and Claspin in a human cell-free system.	www.ncbi.nlm.ni...
PMID 15226314	View Gene Set	1.616e-07	20	4.5e-05	9	Human claspin is a ring-shaped DNA-binding protein with high affinity to branched DNA structures.	www.ncbi.nlm.ni...
PMID 12614612	View Gene Set	1.95e-07	19	4.888e-05	10	Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells.	www.ncbi.nlm.ni...
PMID 9822671	View Gene Set	2.167e-07	10	4.94e-05	11	Replication factor C disengages from proliferating cell nuclear antigen (PCNA) upon sliding clamp formation and PCNA itself tethers DNA polymerase delta to DNA.	www.ncbi.nlm.ni...
PMID 19690177	View Gene Set	3.845e-07	31	8.033e-05	12	Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk.	www.ncbi.nlm.ni...
PMID 11473323	View Gene Set	4.627e-07	13	8.473e-05	13	RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes.	www.ncbi.nlm.ni...
PMID 12171929	View Gene Set	4.732e-07	31	8.473e-05	13	A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein.	www.ncbi.nlm.ni...
PMID 11078522	View Gene Set	5.758e-07	12	9.623e-05	15	The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes.	www.ncbi.nlm.ni...
PMID 20522537	View Gene Set	6.433e-07	73	0.0001008	16	Variation within DNA repair pathway genes and risk of multiple sclerosis.	www.ncbi.nlm.ni...
PMID 11734557	View Gene Set	7.5e-07	12	0.0001052	17	SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones.	www.ncbi.nlm.ni...
PMID 12837248	View Gene Set	7.84e-07	22	0.0001052	17	The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome.	www.ncbi.nlm.ni...
PMID 15504738	View Gene Set	7.976e-07	19	0.0001052	17	Genes affecting the cell cycle growth maintenance and drug sensitivity are preferentially regulated by anti-HER2 antibody through phosphatidylinositol 3-kinase-AKT signaling.	www.ncbi.nlm.ni...
PMID 15302935	View Gene Set	1.139e-06	773	0.0001427	20	Large-scale characterization of HeLa cell nuclear phosphoproteins.	www.ncbi.nlm.ni...
PMID 12045100	View Gene Set	1.679e-06	18	0.0001913	21	DNA replication in eukaryotic cells.	www.ncbi.nlm.ni...
PMID 12226669	View Gene Set	1.615e-06	108	0.0001913	21	Comprehensive proteomic analysis of the human spliceosome.	www.ncbi.nlm.ni...
PMID 12393188	View Gene Set	2.158e-06	15	0.0002353	23	Ku antigen an origin-specific binding protein that associates with replication proteins is required for mammalian DNA replication.	www.ncbi.nlm.ni...
PMID 20496165	View Gene Set	3.138e-06	68	0.0003278	24	Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk.	www.ncbi.nlm.ni...
PMID 10078207	View Gene Set	3.621e-06	10	0.0003491	25	Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits.	www.ncbi.nlm.ni...
PMID 16565220	View Gene Set	3.548e-06	210	0.0003491	25	Phosphoproteome analysis of the human mitotic spindle.	www.ncbi.nlm.ni...
PMID 12665591	View Gene Set	4.022e-06	10	0.0003734	27	Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner.	www.ncbi.nlm.ni...
PMID 11095689	View Gene Set	4.615e-06	17	0.0004132	28	The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase.	www.ncbi.nlm.ni...
PMID 11784859	View Gene Set	5.352e-06	16	0.0004627	29	Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1).	www.ncbi.nlm.ni...
PMID 8895581	View Gene Set	6.337e-06	12	0.0005296	30	Purification and biochemical heterogeneity of the mammalian SWI-SNF complex.	www.ncbi.nlm.ni...
PMID 11931757	View Gene Set	8.221e-06	22	0.0006648	31	Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication.	www.ncbi.nlm.ni...
PMID 18162579	View Gene Set	8.995e-06	22	0.0007047	32	Identification of novel human Cdt1-binding proteins by a proteomics approach: proteolytic regulation by APC/CCdh1.	www.ncbi.nlm.ni...
PMID 18270339	View Gene Set	1.046e-05	57	0.0007946	33	Comprehensive analysis of DNA repair gene variants and risk of meningioma.	www.ncbi.nlm.ni...
PMID 11310559	View Gene Set	1.107e-05	17	0.0008164	34	Identification of nuclear-import and cell-cycle regulatory proteins that bind to prothymosin alpha.	www.ncbi.nlm.ni...
PMID 20347428	View Gene Set	1.177e-05	14	0.0008432	35	A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability.	www.ncbi.nlm.ni...
PMID 19738611	View Gene Set	1.37e-05	39	0.000954	36	Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis.	www.ncbi.nlm.ni...
PMID 16622419	View Gene Set	1.773e-05	16	0.001201	37	The human CENP-A centromeric nucleosome-associated complex.	www.ncbi.nlm.ni...
PMID 8662825	View Gene Set	1.985e-05	10	0.001309	38	Cyclin-dependent kinases are inactivated by a combination of p21 and Thr-14/Tyr-15 phosphorylation after UV-induced DNA damage.	www.ncbi.nlm.ni...
PMID 15009096	View Gene Set	2.269e-05	39	0.001459	39	Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex while BMI-1 is transiently co-localized with the centromeric region in interphase.	www.ncbi.nlm.ni...
PMID 16622420	View Gene Set	2.614e-05	14	0.001638	40	The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres.	www.ncbi.nlm.ni...
PMID 17643375	View Gene Set	2.991e-05	391	0.001829	41	Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.	www.ncbi.nlm.ni...
PMID 12973351	View Gene Set	3.484e-05	12	0.002079	42	A novel ubiquitin ligase is deficient in Fanconi anemia.	www.ncbi.nlm.ni...
PMID 10436018	View Gene Set	4.824e-05	15	0.002812	43	The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells.	www.ncbi.nlm.ni...
PMID 18950845	View Gene Set	5.749e-05	88	0.003203	44	Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study.	www.ncbi.nlm.ni...
PMID 20085707	View Gene Set	5.708e-05	42	0.003203	44	Aire's partners in the molecular control of immunological tolerance.	www.ncbi.nlm.ni...
PMID 19124506	View Gene Set	5.956e-05	118	0.003246	46	Common genetic variation in candidate genes and susceptibility to subtypes of breast cancer.	www.ncbi.nlm.ni...
PMID 10608806	View Gene Set	6.764e-05	25	0.003608	47	Substrate specificities and identification of putative substrates of ATM kinase family members.	www.ncbi.nlm.ni...
PMID 15050687	View Gene Set	6.956e-05	11	0.003633	48	Proliferation inhibition of astrocytes neurons and non-glial cells by intracellularly expressed human immunodeficiency virus type 1 (HIV-1) Tat protein.	www.ncbi.nlm.ni...
PMID 14559993	View Gene Set	7.537e-05	51	0.003856	49	Regulation of alternative splicing by SRrp86 and its interacting proteins.	www.ncbi.nlm.ni...
PMID 16387653	View Gene Set	9.525e-05	42	0.004776	50	ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.	www.ncbi.nlm.ni...
PMID 19468067	View Gene Set	0.0001177	10	0.005787	51	Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly.	www.ncbi.nlm.ni...
PMID 19536649	View Gene Set	0.0001325	15	0.006389	52	The Fanconi anemia family of genes and its correlation with breast cancer susceptibility and breast cancer features.	www.ncbi.nlm.ni...
PMID 16916647	View Gene Set	0.0001616	76	0.007644	53	Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.	www.ncbi.nlm.ni...
PMID 17220478	View Gene Set	0.000245	63	0.01137	54	Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells.	www.ncbi.nlm.ni...
PMID 12930902	View Gene Set	0.0002739	11	0.01248	55	The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA.	www.ncbi.nlm.ni...
PMID 11080476	View Gene Set	0.000292	87	0.01284	56	Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones.	www.ncbi.nlm.ni...
PMID 12927788	View Gene Set	0.0002873	17	0.01284	56	hLodestar/HuF2 interacts with CDC5L and is involved in pre-mRNA splicing.	www.ncbi.nlm.ni...
PMID 11689053	View Gene Set	0.0003125	70	0.01351	58	Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA.	www.ncbi.nlm.ni...
PMID 19661089	View Gene Set	0.0003221	28	0.01369	59	Genetic variation in immune regulation and DNA repair pathways and stomach cancer in China.	www.ncbi.nlm.ni...
PMID 11416179	View Gene Set	0.0003588	12	0.01487	60	All kinesin superfamily protein KIF genes in mouse and human.	www.ncbi.nlm.ni...
PMID 15146197	View Gene Set	0.0003619	693	0.01487	60	Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation.	www.ncbi.nlm.ni...
PMID 9244350	View Gene Set	0.0003732	11	0.01509	62	BRCA1 proteins are transported to the nucleus in the absence of serum and splice variants BRCA1a BRCA1b are tyrosine phosphoproteins that associate with E2F cyclins and cyclin dependent kinases.	www.ncbi.nlm.ni...
PMID 15057824	View Gene Set	0.0003878	274	0.01543	63	The DNA sequence and biology of human chromosome 19.	www.ncbi.nlm.ni...
PMID 9710619	View Gene Set	0.000424	16	0.01661	64	A human RNA polymerase II complex containing factors that modify chromatin structure.	www.ncbi.nlm.ni...
PMID 17388661	View Gene Set	0.0004375	24	0.01688	65	Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen.	www.ncbi.nlm.ni...
PMID 12231349	View Gene Set	0.0005193	11	0.01973	66	Protocadherins.	www.ncbi.nlm.ni...
PMID 15592455	View Gene Set	0.0005483	317	0.02015	67	Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.	www.ncbi.nlm.ni...
PMID 15952740	View Gene Set	0.0005422	58	0.02015	67	Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry.	www.ncbi.nlm.ni...
PMID 16964243	View Gene Set	0.0005546	504	0.02015	67	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	www.ncbi.nlm.ni...
PMID 17081065	View Gene Set	0.0005757	80	0.02062	70	Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes.	www.ncbi.nlm.ni...
PMID 11322959	View Gene Set	0.0007294	20	0.02576	71	The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation despite the difference in gene number.	www.ncbi.nlm.ni...
PMID 12388589	View Gene Set	0.0007843	17	0.02731	72	A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons.	www.ncbi.nlm.ni...
PMID 11984006	View Gene Set	0.0008469	27	0.02909	73	The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins.	www.ncbi.nlm.ni...
PMID 9439656	View Gene Set	0.0008697	55	0.02946	74	The human histone gene cluster at the D6S105 locus.	www.ncbi.nlm.ni...
PMID 15635413	View Gene Set	0.0008924	421	0.02983	75	Nucleolar proteome dynamics.	www.ncbi.nlm.ni...
PMID 17577209	View Gene Set	0.0009951	28	0.03283	76	The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing.	www.ncbi.nlm.ni...
PMID 20226869	View Gene Set	0.001131	25	0.03682	77	Association between genetic variants in the base excision repair pathway and outcomes after hematopoietic cell transplantations.	www.ncbi.nlm.ni...
PMID 19710015	View Gene Set	0.001321	48	0.04246	78	The metastasis efficiency modifier ribosomal RNA processing 1 homolog B (RRP1B) is a chromatin-associated factor.	www.ncbi.nlm.ni...
PMID 10766737	View Gene Set	0.001522	11	0.0483	79	Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression.	www.ncbi.nlm.ni...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null PS00292	View Gene Set	2.318e-05	10	0.01323	1	CYCLINS	expasy.org/pros...
Null PS00847	View Gene Set	3.601e-05	6	0.01323	1	MCM_1	expasy.org/pros...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.E2F1	View Gene Set	1.153e-05	12	0.002179	1	Protein-protein-interaction for E2F1	www.ncbi.nlm.ni...
Null ppi.CDKN1A	View Gene Set	0.0002351	9	0.016	2	Protein-protein-interaction for CDKN1A	www.ncbi.nlm.ni...
Null ppi.E2F4	View Gene Set	0.0004477	14	0.016	2	Protein-protein-interaction for E2F4	www.ncbi.nlm.ni...
Null ppi.SMAD2	View Gene Set	0.000508	6	0.016	2	Protein-protein-interaction for SMAD2	www.ncbi.nlm.ni...
Null ppi.MAPK3	View Gene Set	0.0005043	9	0.016	2	Protein-protein-interaction for MAPK3	www.ncbi.nlm.ni...
Null ppi.RAD51	View Gene Set	0.0003254	7	0.016	2	Protein-protein-interaction for RAD51	www.ncbi.nlm.ni...
Null ppi.RBL2	View Gene Set	0.0006655	14	0.01797	7	Protein-protein-interaction for RBL2	www.ncbi.nlm.ni...
Null ppi.RBL1	View Gene Set	0.001637	7	0.03867	8	Protein-protein-interaction for RBL1	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.RPA1	View Gene Set	1.153e-08	23	2.65e-05	1	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	1.361e-07	12	0.0001563	2	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.155871	View Gene Set	2.134e-07	236	0.0001634	3	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	6.682e-07	17	0.0003837	4	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.CDK2	View Gene Set	2.652e-06	12	0.001218	5	Protein-protein-interaction for CDK2	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	1.178e-05	35	0.002403	6	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.KPNA2	View Gene Set	1.373e-05	14	0.002403	6	Protein-protein-interaction for KPNA2	www.ncbi.nlm.ni...
Null ppi.PCNA	View Gene Set	1.309e-05	40	0.002403	6	Protein-protein-interaction for PCNA	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	6.504e-06	147	0.002403	6	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	1.062e-05	37	0.002403	6	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.CDC7	View Gene Set	8.778e-06	7	0.002403	6	Protein-protein-interaction for CDC7	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	1.465e-05	28	0.002403	6	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.854067	View Gene Set	1.177e-05	15	0.002403	6	Protein-protein-interaction for 854067	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	1.44e-05	11	0.002403	6	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.FOXM1	View Gene Set	1.921e-05	8	0.002758	15	Protein-protein-interaction for FOXM1	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	1.83e-05	9	0.002758	15	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.CHTF18	View Gene Set	2.446e-05	13	0.00318	17	Protein-protein-interaction for CHTF18	www.ncbi.nlm.ni...
Null ppi.BRIP1	View Gene Set	2.492e-05	8	0.00318	17	Protein-protein-interaction for BRIP1	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	3.476e-05	24	0.00363	19	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	3.378e-05	40	0.00363	19	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.BAZ1B	View Gene Set	3.454e-05	30	0.00363	19	Protein-protein-interaction for BAZ1B	www.ncbi.nlm.ni...
Null ppi.CDK1	View Gene Set	3.352e-05	7	0.00363	19	Protein-protein-interaction for CDK1	www.ncbi.nlm.ni...
Null ppi.PMS1	View Gene Set	4.391e-05	15	0.004344	23	Protein-protein-interaction for PMS1	www.ncbi.nlm.ni...
Null ppi.TP53BP1	View Gene Set	4.539e-05	13	0.004344	23	Protein-protein-interaction for TP53BP1	www.ncbi.nlm.ni...
Null ppi.CDC45	View Gene Set	5.649e-05	9	0.00519	25	Protein-protein-interaction for CDC45	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	6.197e-05	168	0.005475	26	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.FANCM	View Gene Set	7.075e-05	13	0.005992	27	Protein-protein-interaction for FANCM	www.ncbi.nlm.ni...
Null ppi.RFC4	View Gene Set	7.304e-05	10	0.005992	27	Protein-protein-interaction for RFC4	www.ncbi.nlm.ni...
Null ppi.ALL1	View Gene Set	9.516e-05	19	0.007493	29	Protein-protein-interaction for ALL1	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	9.787e-05	64	0.007493	29	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.PMS2	View Gene Set	0.0001035	14	0.007509	31	Protein-protein-interaction for PMS2	www.ncbi.nlm.ni...
Null ppi.BANF1	View Gene Set	0.0001046	34	0.007509	31	Protein-protein-interaction for BANF1	www.ncbi.nlm.ni...
Null ppi.CBX3	View Gene Set	0.0001163	23	0.007854	33	Protein-protein-interaction for CBX3	www.ncbi.nlm.ni...
Null ppi.SNW1	View Gene Set	0.0001137	32	0.007854	33	Protein-protein-interaction for SNW1	www.ncbi.nlm.ni...
Null ppi.RFC5	View Gene Set	0.0001286	8	0.008441	35	Protein-protein-interaction for RFC5	www.ncbi.nlm.ni...
Null ppi.SIN3A	View Gene Set	0.000145	104	0.009001	36	Protein-protein-interaction for SIN3A	www.ncbi.nlm.ni...
Null ppi.CHD1L	View Gene Set	0.0001414	15	0.009001	36	Protein-protein-interaction for CHD1L	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	0.0001607	71	0.009715	38	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.ARID1A	View Gene Set	0.000177	14	0.01042	39	Protein-protein-interaction for ARID1A	www.ncbi.nlm.ni...
Null ppi.CLSPN	View Gene Set	0.0002078	17	0.01193	40	Protein-protein-interaction for CLSPN	www.ncbi.nlm.ni...
Null ppi.CDK4	View Gene Set	0.0002343	7	0.01312	41	Protein-protein-interaction for CDK4	www.ncbi.nlm.ni...
Null ppi.MGMT	View Gene Set	0.0002481	28	0.01357	42	Protein-protein-interaction for MGMT	www.ncbi.nlm.ni...
Null ppi.FANCG	View Gene Set	0.0002543	11	0.01357	43	Protein-protein-interaction for FANCG	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.00026	38	0.01357	43	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.CDKN1A	View Gene Set	0.0002771	14	0.01384	45	Protein-protein-interaction for CDKN1A	www.ncbi.nlm.ni...
Null ppi.SETD8	View Gene Set	0.0002721	9	0.01384	45	Protein-protein-interaction for SETD8	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	0.0003122	53	0.01526	47	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	0.0003332	35	0.01551	48	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.ORC6L	View Gene Set	0.0003436	11	0.01551	48	Protein-protein-interaction for ORC6L	www.ncbi.nlm.ni...
Null ppi.HNRNPH1	View Gene Set	0.0003426	9	0.01551	48	Protein-protein-interaction for HNRNPH1	www.ncbi.nlm.ni...
Null ppi.RPA3	View Gene Set	0.0003443	5	0.01551	48	Protein-protein-interaction for RPA3	www.ncbi.nlm.ni...
Null ppi.RFC1	View Gene Set	0.000398	18	0.01758	52	Protein-protein-interaction for RFC1	www.ncbi.nlm.ni...
Null ppi.SMARCC1	View Gene Set	0.0004061	26	0.01759	53	Protein-protein-interaction for SMARCC1	www.ncbi.nlm.ni...
Null ppi.SMARCD1	View Gene Set	0.0004134	17	0.01759	53	Protein-protein-interaction for SMARCD1	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0004281	11	0.01775	55	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.SMARCB1	View Gene Set	0.0004326	30	0.01775	55	Protein-protein-interaction for SMARCB1	www.ncbi.nlm.ni...
Null ppi.HIST3H3	View Gene Set	0.0004521	16	0.01822	57	Protein-protein-interaction for HIST3H3	www.ncbi.nlm.ni...
Null ppi.THRB	View Gene Set	0.0004684	8	0.01855	58	Protein-protein-interaction for THRB	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	0.0005197	15	0.01982	59	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.CBX4	View Gene Set	0.0005263	13	0.01982	59	Protein-protein-interaction for CBX4	www.ncbi.nlm.ni...
Null ppi.AP3B1	View Gene Set	0.0005108	6	0.01982	59	Protein-protein-interaction for AP3B1	www.ncbi.nlm.ni...
Null ppi.RFC2	View Gene Set	0.0005436	8	0.02014	62	Protein-protein-interaction for RFC2	www.ncbi.nlm.ni...
Null ppi.BRD7	View Gene Set	0.0006777	20	0.02471	63	Protein-protein-interaction for BRD7	www.ncbi.nlm.ni...
Null ppi.MCM6	View Gene Set	0.0006893	6	0.02474	64	Protein-protein-interaction for MCM6	www.ncbi.nlm.ni...
Null ppi.PRMT1	View Gene Set	0.0007021	15	0.02481	65	Protein-protein-interaction for PRMT1	www.ncbi.nlm.ni...
Null ppi.ARID2	View Gene Set	0.0007152	6	0.02489	66	Protein-protein-interaction for ARID2	www.ncbi.nlm.ni...
Null ppi.APITD1	View Gene Set	0.0007312	14	0.02507	67	Protein-protein-interaction for APITD1	www.ncbi.nlm.ni...
Null ppi.MBD3	View Gene Set	0.0008121	18	0.02743	68	Protein-protein-interaction for MBD3	www.ncbi.nlm.ni...
Null ppi.RBL1	View Gene Set	0.0008547	24	0.02845	69	Protein-protein-interaction for RBL1	www.ncbi.nlm.ni...
Null ppi.TP73	View Gene Set	0.00093	21	0.03052	70	Protein-protein-interaction for TP73	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.0009638	10	0.03075	71	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.NPDC1	View Gene Set	0.0009626	11	0.03075	71	Protein-protein-interaction for NPDC1	www.ncbi.nlm.ni...
Null ppi.NPM1	View Gene Set	0.0009929	16	0.03124	73	Protein-protein-interaction for NPM1	www.ncbi.nlm.ni...
Null ppi.LARP1	View Gene Set	0.001041	6	0.03232	74	Protein-protein-interaction for LARP1	www.ncbi.nlm.ni...
Null ppi.RMI1	View Gene Set	0.001091	6	0.03341	75	Protein-protein-interaction for RMI1	www.ncbi.nlm.ni...
Null ppi.EXOSC5	View Gene Set	0.001213	11	0.03668	76	Protein-protein-interaction for EXOSC5	www.ncbi.nlm.ni...
Null ppi.HSPA8	View Gene Set	0.001303	21	0.03769	77	Protein-protein-interaction for HSPA8	www.ncbi.nlm.ni...
Null ppi.ASF1B	View Gene Set	0.001316	23	0.03769	77	Protein-protein-interaction for ASF1B	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	0.001329	38	0.03769	77	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.TERF2	View Gene Set	0.001279	9	0.03769	77	Protein-protein-interaction for TERF2	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	0.001289	38	0.03769	77	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.GAS7	View Gene Set	0.001352	10	0.03787	82	Protein-protein-interaction for GAS7	www.ncbi.nlm.ni...
Null ppi.NEDD4	View Gene Set	0.001444	18	0.03996	83	Protein-protein-interaction for NEDD4	www.ncbi.nlm.ni...
Null ppi.FAN1	View Gene Set	0.001632	13	0.0431	84	Protein-protein-interaction for FAN1	www.ncbi.nlm.ni...
Null ppi.PHLPP1	View Gene Set	0.001622	13	0.0431	84	Protein-protein-interaction for PHLPP1	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	0.001615	50	0.0431	84	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	0.00161	42	0.0431	84	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.RECQL5	View Gene Set	0.001681	15	0.04388	88	Protein-protein-interaction for RECQL5	www.ncbi.nlm.ni...
Null ppi.HIST2H3C	View Gene Set	0.001718	26	0.04388	89	Protein-protein-interaction for HIST2H3C	www.ncbi.nlm.ni...
Null ppi.ORC4L	View Gene Set	0.001719	7	0.04388	89	Protein-protein-interaction for ORC4L	www.ncbi.nlm.ni...
Null ppi.ATRIP	View Gene Set	0.001789	9	0.04516	91	Protein-protein-interaction for ATRIP	www.ncbi.nlm.ni...
Null ppi.TFDP1	View Gene Set	0.001814	8	0.04529	92	Protein-protein-interaction for TFDP1	www.ncbi.nlm.ni...
Null ppi.MIS12	View Gene Set	0.001843	9	0.04551	93	Protein-protein-interaction for MIS12	www.ncbi.nlm.ni...
Null ppi.IKZF1	View Gene Set	0.0019	16	0.04569	94	Protein-protein-interaction for IKZF1	www.ncbi.nlm.ni...
Null ppi.EWSR1	View Gene Set	0.001886	18	0.04569	94	Protein-protein-interaction for EWSR1	www.ncbi.nlm.ni...
Null ppi.MAML1	View Gene Set	0.001909	7	0.04569	94	Protein-protein-interaction for MAML1	www.ncbi.nlm.ni...
Null ppi.MCM8	View Gene Set	0.001981	6	0.04692	97	Protein-protein-interaction for MCM8	www.ncbi.nlm.ni...
Null ppi.SPTAN1	View Gene Set	0.002049	19	0.04802	98	Protein-protein-interaction for SPTAN1	www.ncbi.nlm.ni...
Null ppi.850620	View Gene Set	0.002071	20	0.04806	99	Protein-protein-interaction for 850620	www.ncbi.nlm.ni...
Null ppi.CARM1	View Gene Set	0.002119	32	0.04859	100	Protein-protein-interaction for CARM1	www.ncbi.nlm.ni...
Null ppi.HSP90AA1	View Gene Set	0.002194	33	0.04859	100	Protein-protein-interaction for HSP90AA1	www.ncbi.nlm.ni...
Null ppi.HIST2H2BE	View Gene Set	0.002149	17	0.04859	100	Protein-protein-interaction for HIST2H2BE	www.ncbi.nlm.ni...
Null ppi.FXR2	View Gene Set	0.002165	20	0.04859	100	Protein-protein-interaction for FXR2	www.ncbi.nlm.ni...
Null ppi.NR1H4	View Gene Set	0.0022	12	0.04859	100	Protein-protein-interaction for NR1H4	www.ncbi.nlm.ni...
Null ppi.PAXIP1	View Gene Set	0.002252	18	0.04881	105	Protein-protein-interaction for PAXIP1	www.ncbi.nlm.ni...
Null ppi.XRCC2	View Gene Set	0.00224	6	0.04881	105	Protein-protein-interaction for XRCC2	www.ncbi.nlm.ni...
Null ppi.SKP2	View Gene Set	0.002301	24	0.04884	107	Protein-protein-interaction for SKP2	www.ncbi.nlm.ni...
Null ppi.USF1	View Gene Set	0.002318	14	0.04884	107	Protein-protein-interaction for USF1	www.ncbi.nlm.ni...
Null ppi.COIL	View Gene Set	0.002292	5	0.04884	107	Protein-protein-interaction for COIL	www.ncbi.nlm.ni...
Null ppi.26397	View Gene Set	0.002394	6	0.04932	110	Protein-protein-interaction for 26397	www.ncbi.nlm.ni...
Null ppi.TSPYL2	View Gene Set	0.002405	8	0.04932	110	Protein-protein-interaction for TSPYL2	www.ncbi.nlm.ni...
Null ppi.72433	View Gene Set	0.002394	6	0.04932	110	Protein-protein-interaction for 72433	www.ncbi.nlm.ni...
Null ppi.CNNM3	View Gene Set	0.002429	6	0.04936	113	Protein-protein-interaction for CNNM3	www.ncbi.nlm.ni...
Null ppi.SMARCA4	View Gene Set	0.00245	59	0.04936	113	Protein-protein-interaction for SMARCA4	www.ncbi.nlm.ni...

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.ORC2L	View Gene Set	1.143e-06	11	0.002714	1	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.CDKN1A	View Gene Set	8.952e-06	17	0.005313	2	Protein-protein-interaction for CDKN1A	www.ncbi.nlm.ni...
Null ppi.RPA1	View Gene Set	5.913e-06	14	0.005313	2	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	7.257e-06	13	0.005313	2	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	1.897e-05	7	0.009006	5	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.CDKN1B	View Gene Set	3.421e-05	14	0.009293	6	Protein-protein-interaction for CDKN1B	www.ncbi.nlm.ni...
Null ppi.ORC6L	View Gene Set	2.982e-05	10	0.009293	6	Protein-protein-interaction for ORC6L	www.ncbi.nlm.ni...
Null ppi.CDC7	View Gene Set	2.369e-05	13	0.009293	6	Protein-protein-interaction for CDC7	www.ncbi.nlm.ni...
Null ppi.AP3B1	View Gene Set	3.523e-05	9	0.009293	6	Protein-protein-interaction for AP3B1	www.ncbi.nlm.ni...
Null ppi.CDK2	View Gene Set	3.924e-05	9	0.009316	10	Protein-protein-interaction for CDK2	www.ncbi.nlm.ni...
Null ppi.CDK4	View Gene Set	6.548e-05	8	0.01237	11	Protein-protein-interaction for CDK4	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	6.774e-05	8	0.01237	11	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.PCBP2	View Gene Set	6.403e-05	7	0.01237	11	Protein-protein-interaction for PCBP2	www.ncbi.nlm.ni...
Null ppi.MCM4	View Gene Set	7.311e-05	6	0.0124	14	Protein-protein-interaction for MCM4	www.ncbi.nlm.ni...
Null ppi.PTK2B	View Gene Set	0.0001219	11	0.01849	15	Protein-protein-interaction for PTK2B	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	0.0001246	13	0.01849	15	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	0.0001585	13	0.02091	17	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.CENPJ	View Gene Set	0.0001513	12	0.02091	17	Protein-protein-interaction for CENPJ	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	0.0001843	166	0.02302	19	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.SKP2	View Gene Set	0.0002144	20	0.02545	20	Protein-protein-interaction for SKP2	www.ncbi.nlm.ni...
Null ppi.NDRG1	View Gene Set	0.0003115	58	0.02683	21	Protein-protein-interaction for NDRG1	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.0002745	27	0.02683	21	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.SFRS12	View Gene Set	0.0002804	49	0.02683	21	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.0003008	22	0.02683	21	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.GLS2	View Gene Set	0.0002506	9	0.02683	21	Protein-protein-interaction for GLS2	www.ncbi.nlm.ni...
Null ppi.POLR2A	View Gene Set	0.00028	22	0.02683	21	Protein-protein-interaction for POLR2A	www.ncbi.nlm.ni...
Null ppi.AURKB	View Gene Set	0.0003139	11	0.02683	21	Protein-protein-interaction for AURKB	www.ncbi.nlm.ni...
Null ppi.CDK1	View Gene Set	0.0003164	14	0.02683	21	Protein-protein-interaction for CDK1	www.ncbi.nlm.ni...
Null ppi.FANCG	View Gene Set	0.0003386	8	0.0269	29	Protein-protein-interaction for FANCG	www.ncbi.nlm.ni...
Null ppi.MCM10	View Gene Set	0.00034	25	0.0269	29	Protein-protein-interaction for MCM10	www.ncbi.nlm.ni...
Null ppi.YBX1	View Gene Set	0.000384	10	0.02912	31	Protein-protein-interaction for YBX1	www.ncbi.nlm.ni...
Null ppi.PTBP1	View Gene Set	0.0003925	7	0.02912	31	Protein-protein-interaction for PTBP1	www.ncbi.nlm.ni...
Null ppi.PRKD3	View Gene Set	0.0004319	6	0.03107	33	Protein-protein-interaction for PRKD3	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0004635	8	0.03237	34	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.MYBL2	View Gene Set	0.0005659	10	0.03838	35	Protein-protein-interaction for MYBL2	www.ncbi.nlm.ni...
Null ppi.E2F1	View Gene Set	0.0006529	14	0.04189	36	Protein-protein-interaction for E2F1	www.ncbi.nlm.ni...
Null ppi.GAB1	View Gene Set	0.0006416	6	0.04189	36	Protein-protein-interaction for GAB1	www.ncbi.nlm.ni...
Null ppi.C17orf28	View Gene Set	0.0007011	6	0.04268	38	Protein-protein-interaction for C17orf28	www.ncbi.nlm.ni...
Null ppi.ITGA5	View Gene Set	0.0006983	12	0.04268	38	Protein-protein-interaction for ITGA5	www.ncbi.nlm.ni...
Null ppi.PTMA	View Gene Set	0.0007428	18	0.04409	40	Protein-protein-interaction for PTMA	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	0.0007741	17	0.04482	41	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.RPA1	View Gene Set	4.557e-09	24	1.638e-05	1	Protein-protein-interaction for RPA1	www.ncbi.nlm.ni...
Null ppi.ORC2L	View Gene Set	1e-08	15	1.798e-05	2	Protein-protein-interaction for ORC2L	www.ncbi.nlm.ni...
Null ppi.MCPH1	View Gene Set	6.682e-07	17	0.0008005	3	Protein-protein-interaction for MCPH1	www.ncbi.nlm.ni...
Null ppi.CDK2	View Gene Set	1.744e-06	15	0.001102	4	Protein-protein-interaction for CDK2	www.ncbi.nlm.ni...
Null ppi.ORC6L	View Gene Set	2.146e-06	15	0.001102	4	Protein-protein-interaction for ORC6L	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	1.94e-06	31	0.001102	4	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.AP3B1	View Gene Set	1.573e-06	12	0.001102	4	Protein-protein-interaction for AP3B1	www.ncbi.nlm.ni...
Null ppi.ORC1L	View Gene Set	2.64e-06	11	0.001186	8	Protein-protein-interaction for ORC1L	www.ncbi.nlm.ni...
Null ppi.155871	View Gene Set	4.792e-06	251	0.00154	9	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.FOXM1	View Gene Set	4.713e-06	9	0.00154	9	Protein-protein-interaction for FOXM1	www.ncbi.nlm.ni...
Null ppi.ORC3L	View Gene Set	5.141e-06	16	0.00154	9	Protein-protein-interaction for ORC3L	www.ncbi.nlm.ni...
Null ppi.CDT1	View Gene Set	4.907e-06	42	0.00154	9	Protein-protein-interaction for CDT1	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	6.504e-06	147	0.001798	13	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	1.178e-05	35	0.002491	14	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.RPA2	View Gene Set	1.171e-05	25	0.002491	14	Protein-protein-interaction for RPA2	www.ncbi.nlm.ni...
Null ppi.XRCC5	View Gene Set	1.055e-05	52	0.002491	14	Protein-protein-interaction for XRCC5	www.ncbi.nlm.ni...
Null ppi.854067	View Gene Set	1.177e-05	15	0.002491	14	Protein-protein-interaction for 854067	www.ncbi.nlm.ni...
Null ppi.CDKN1A	View Gene Set	1.277e-05	20	0.002551	18	Protein-protein-interaction for CDKN1A	www.ncbi.nlm.ni...
Null ppi.PCBP2	View Gene Set	1.512e-05	8	0.002588	19	Protein-protein-interaction for PCBP2	www.ncbi.nlm.ni...
Null ppi.PCNA	View Gene Set	1.417e-05	47	0.002588	19	Protein-protein-interaction for PCNA	www.ncbi.nlm.ni...
Null ppi.BCL7C	View Gene Set	1.44e-05	11	0.002588	19	Protein-protein-interaction for BCL7C	www.ncbi.nlm.ni...
Null ppi.TP53	View Gene Set	1.802e-05	220	0.002943	22	Protein-protein-interaction for TP53	www.ncbi.nlm.ni...
Null ppi.CHTF18	View Gene Set	2.446e-05	13	0.003444	23	Protein-protein-interaction for CHTF18	www.ncbi.nlm.ni...
Null ppi.CDC7	View Gene Set	2.369e-05	13	0.003444	23	Protein-protein-interaction for CDC7	www.ncbi.nlm.ni...
Null ppi.BRIP1	View Gene Set	2.492e-05	8	0.003444	23	Protein-protein-interaction for BRIP1	www.ncbi.nlm.ni...
Null ppi.BAZ1B	View Gene Set	2.335e-05	31	0.003444	23	Protein-protein-interaction for BAZ1B	www.ncbi.nlm.ni...
Null ppi.RBL2	View Gene Set	3.602e-05	30	0.004795	27	Protein-protein-interaction for RBL2	www.ncbi.nlm.ni...
Null ppi.ATAD5	View Gene Set	3.963e-05	6	0.005087	28	Protein-protein-interaction for ATAD5	www.ncbi.nlm.ni...
Null ppi.E2F1	View Gene Set	4.199e-05	24	0.005204	29	Protein-protein-interaction for E2F1	www.ncbi.nlm.ni...
Null ppi.PMS1	View Gene Set	4.391e-05	15	0.005261	30	Protein-protein-interaction for PMS1	www.ncbi.nlm.ni...
Null ppi.MATR3	View Gene Set	4.935e-05	7	0.005722	31	Protein-protein-interaction for MATR3	www.ncbi.nlm.ni...
Null ppi.CDK1	View Gene Set	5.315e-05	16	0.005969	32	Protein-protein-interaction for CDK1	www.ncbi.nlm.ni...
Null ppi.CDK4	View Gene Set	6.548e-05	8	0.00693	33	Protein-protein-interaction for CDK4	www.ncbi.nlm.ni...
Null ppi.MCM3	View Gene Set	6.766e-05	6	0.00693	33	Protein-protein-interaction for MCM3	www.ncbi.nlm.ni...
Null ppi.FANCM	View Gene Set	7.075e-05	13	0.00693	33	Protein-protein-interaction for FANCM	www.ncbi.nlm.ni...
Null ppi.RBL1	View Gene Set	6.644e-05	31	0.00693	33	Protein-protein-interaction for RBL1	www.ncbi.nlm.ni...
Null ppi.XRCC3	View Gene Set	7.327e-05	6	0.00693	33	Protein-protein-interaction for XRCC3	www.ncbi.nlm.ni...
Null ppi.ARID1A	View Gene Set	7.24e-05	15	0.00693	33	Protein-protein-interaction for ARID1A	www.ncbi.nlm.ni...
Null ppi.ALL1	View Gene Set	9.516e-05	19	0.008099	39	Protein-protein-interaction for ALL1	www.ncbi.nlm.ni...
Null ppi.E2F3	View Gene Set	9.689e-05	8	0.008099	39	Protein-protein-interaction for E2F3	www.ncbi.nlm.ni...
Null ppi.E2F4	View Gene Set	9.448e-05	16	0.008099	39	Protein-protein-interaction for E2F4	www.ncbi.nlm.ni...
Null ppi.MCM4	View Gene Set	8.978e-05	8	0.008099	39	Protein-protein-interaction for MCM4	www.ncbi.nlm.ni...
Null ppi.PTMA	View Gene Set	9.63e-05	21	0.008099	39	Protein-protein-interaction for PTMA	www.ncbi.nlm.ni...
Null ppi.PMS2	View Gene Set	0.0001035	14	0.008266	44	Protein-protein-interaction for PMS2	www.ncbi.nlm.ni...
Null ppi.BANF1	View Gene Set	0.0001022	35	0.008266	44	Protein-protein-interaction for BANF1	www.ncbi.nlm.ni...
Null ppi.CBX5	View Gene Set	0.0001152	46	0.009001	46	Protein-protein-interaction for CBX5	www.ncbi.nlm.ni...
Null ppi.DBF4	View Gene Set	0.0001256	12	0.009607	47	Protein-protein-interaction for DBF4	www.ncbi.nlm.ni...
Null ppi.RFC5	View Gene Set	0.0001286	8	0.00963	48	Protein-protein-interaction for RFC5	www.ncbi.nlm.ni...
Null ppi.KPNA2	View Gene Set	0.0001376	21	0.01009	49	Protein-protein-interaction for KPNA2	www.ncbi.nlm.ni...
Null ppi.CBX3	View Gene Set	0.0001442	26	0.01016	50	Protein-protein-interaction for CBX3	www.ncbi.nlm.ni...
Null ppi.CHD1L	View Gene Set	0.0001414	15	0.01016	50	Protein-protein-interaction for CHD1L	www.ncbi.nlm.ni...
Null ppi.PTK2B	View Gene Set	0.0001481	12	0.01024	52	Protein-protein-interaction for PTK2B	www.ncbi.nlm.ni...
Null ppi.SMARCC1	View Gene Set	0.0001596	27	0.01082	53	Protein-protein-interaction for SMARCC1	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	0.0001695	66	0.01128	54	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.SGOL1	View Gene Set	0.0001884	24	0.01209	55	Protein-protein-interaction for SGOL1	www.ncbi.nlm.ni...
Null ppi.MCM6	View Gene Set	0.0001863	7	0.01209	55	Protein-protein-interaction for MCM6	www.ncbi.nlm.ni...
Null ppi.ORC4L	View Gene Set	0.0001972	10	0.01209	55	Protein-protein-interaction for ORC4L	www.ncbi.nlm.ni...
Null ppi.MCM10	View Gene Set	0.0001957	28	0.01209	55	Protein-protein-interaction for MCM10	www.ncbi.nlm.ni...
Null ppi.AURKB	View Gene Set	0.0001985	15	0.01209	55	Protein-protein-interaction for AURKB	www.ncbi.nlm.ni...
Null ppi.RFC4	View Gene Set	0.0002163	12	0.01295	60	Protein-protein-interaction for RFC4	www.ncbi.nlm.ni...
Null ppi.POLR2A	View Gene Set	0.000234	49	0.01379	61	Protein-protein-interaction for POLR2A	www.ncbi.nlm.ni...
Null ppi.GLS2	View Gene Set	0.0002506	9	0.01429	62	Protein-protein-interaction for GLS2	www.ncbi.nlm.ni...
Null ppi.MGMT	View Gene Set	0.0002481	28	0.01429	62	Protein-protein-interaction for MGMT	www.ncbi.nlm.ni...
Null ppi.SFRS12	View Gene Set	0.0002612	50	0.01466	64	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.CDC20	View Gene Set	0.0002652	5	0.01466	64	Protein-protein-interaction for CDC20	www.ncbi.nlm.ni...
Null ppi.SETD8	View Gene Set	0.0002721	9	0.01482	66	Protein-protein-interaction for SETD8	www.ncbi.nlm.ni...
Null ppi.E2F2	View Gene Set	0.0002851	6	0.01529	67	Protein-protein-interaction for E2F2	www.ncbi.nlm.ni...
Null ppi.RFC2	View Gene Set	0.0002919	9	0.01543	68	Protein-protein-interaction for RFC2	www.ncbi.nlm.ni...
Null ppi.NDRG1	View Gene Set	0.0003115	58	0.01623	69	Protein-protein-interaction for NDRG1	www.ncbi.nlm.ni...
Null ppi.HNRNPH1	View Gene Set	0.0003426	9	0.01743	70	Protein-protein-interaction for HNRNPH1	www.ncbi.nlm.ni...
Null ppi.RPA3	View Gene Set	0.0003443	5	0.01743	70	Protein-protein-interaction for RPA3	www.ncbi.nlm.ni...
Null ppi.PTBP1	View Gene Set	0.0003593	9	0.01793	72	Protein-protein-interaction for PTBP1	www.ncbi.nlm.ni...
Null ppi.ARID2	View Gene Set	0.00043	8	0.02089	73	Protein-protein-interaction for ARID2	www.ncbi.nlm.ni...
Null ppi.FEN1	View Gene Set	0.0004281	11	0.02089	73	Protein-protein-interaction for FEN1	www.ncbi.nlm.ni...
Null ppi.HSP90AA1	View Gene Set	0.000437	43	0.02094	75	Protein-protein-interaction for HSP90AA1	www.ncbi.nlm.ni...
Null ppi.TCERG1	View Gene Set	0.0004594	39	0.02172	76	Protein-protein-interaction for TCERG1	www.ncbi.nlm.ni...
Null ppi.MCM5	View Gene Set	0.0004829	7	0.02225	77	Protein-protein-interaction for MCM5	www.ncbi.nlm.ni...
Null ppi.ORC5L	View Gene Set	0.0004775	11	0.02225	77	Protein-protein-interaction for ORC5L	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	0.0004967	21	0.0226	79	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.BRD7	View Gene Set	0.0005095	30	0.02266	80	Protein-protein-interaction for BRD7	www.ncbi.nlm.ni...
Null ppi.PRPF40A	View Gene Set	0.0005107	96	0.02266	80	Protein-protein-interaction for PRPF40A	www.ncbi.nlm.ni...
Null ppi.CDKN1B	View Gene Set	0.0005186	17	0.02273	82	Protein-protein-interaction for CDKN1B	www.ncbi.nlm.ni...
Null ppi.PIK3C2A	View Gene Set	0.00055	7	0.02353	83	Protein-protein-interaction for PIK3C2A	www.ncbi.nlm.ni...
Null ppi.CDC45	View Gene Set	0.0005466	13	0.02353	83	Protein-protein-interaction for CDC45	www.ncbi.nlm.ni...
Null ppi.PBRM1	View Gene Set	0.000559	7	0.02364	85	Protein-protein-interaction for PBRM1	www.ncbi.nlm.ni...
Null ppi.CLSPN	View Gene Set	0.0005718	18	0.0239	86	Protein-protein-interaction for CLSPN	www.ncbi.nlm.ni...
Null ppi.CBX4	View Gene Set	0.0005887	18	0.02432	87	Protein-protein-interaction for CBX4	www.ncbi.nlm.ni...
Null ppi.POLA1	View Gene Set	0.0005986	6	0.02445	88	Protein-protein-interaction for POLA1	www.ncbi.nlm.ni...
Null ppi.FANCG	View Gene Set	0.0006142	12	0.02453	89	Protein-protein-interaction for FANCG	www.ncbi.nlm.ni...
Null ppi.BCL11B	View Gene Set	0.0006212	14	0.02453	89	Protein-protein-interaction for BCL11B	www.ncbi.nlm.ni...
Null ppi.TERF2	View Gene Set	0.0006169	10	0.02453	89	Protein-protein-interaction for TERF2	www.ncbi.nlm.ni...
Null ppi.CTCF	View Gene Set	0.0006473	11	0.02502	92	Protein-protein-interaction for CTCF	www.ncbi.nlm.ni...
Null ppi.GAB1	View Gene Set	0.0006416	6	0.02502	92	Protein-protein-interaction for GAB1	www.ncbi.nlm.ni...
Null ppi.PRKDC	View Gene Set	0.0006578	49	0.02515	94	Protein-protein-interaction for PRKDC	www.ncbi.nlm.ni...
Null ppi.C17orf28	View Gene Set	0.0007011	6	0.02653	95	Protein-protein-interaction for C17orf28	www.ncbi.nlm.ni...
Null ppi.CHEK2	View Gene Set	0.0007253	33	0.02681	96	Protein-protein-interaction for CHEK2	www.ncbi.nlm.ni...
Null ppi.APITD1	View Gene Set	0.0007312	14	0.02681	96	Protein-protein-interaction for APITD1	www.ncbi.nlm.ni...
Null ppi.RFC1	View Gene Set	0.0007181	21	0.02681	96	Protein-protein-interaction for RFC1	www.ncbi.nlm.ni...
Null ppi.BAP1	View Gene Set	0.0008049	8	0.02922	99	Protein-protein-interaction for BAP1	www.ncbi.nlm.ni...
Null ppi.PHLPP1	View Gene Set	0.0008297	14	0.02974	100	Protein-protein-interaction for PHLPP1	www.ncbi.nlm.ni...
Null ppi.DSCC1	View Gene Set	0.0008359	6	0.02974	100	Protein-protein-interaction for DSCC1	www.ncbi.nlm.ni...
Null ppi.FXR2	View Gene Set	0.0008544	21	0.0301	102	Protein-protein-interaction for FXR2	www.ncbi.nlm.ni...
Null ppi.CENPJ	View Gene Set	0.0008684	13	0.03017	103	Protein-protein-interaction for CENPJ	www.ncbi.nlm.ni...
Null ppi.WRN	View Gene Set	0.000873	21	0.03017	103	Protein-protein-interaction for WRN	www.ncbi.nlm.ni...
Null ppi.LARP1	View Gene Set	0.001041	6	0.0353	105	Protein-protein-interaction for LARP1	www.ncbi.nlm.ni...
Null ppi.SIN3A	View Gene Set	0.001033	116	0.0353	105	Protein-protein-interaction for SIN3A	www.ncbi.nlm.ni...
Null ppi.HSPA8	View Gene Set	0.001061	30	0.03531	107	Protein-protein-interaction for HSPA8	www.ncbi.nlm.ni...
Null ppi.HIST2H2AC	View Gene Set	0.001061	14	0.03531	107	Protein-protein-interaction for HIST2H2AC	www.ncbi.nlm.ni...
Null ppi.PRKD3	View Gene Set	0.001095	8	0.03578	109	Protein-protein-interaction for PRKD3	www.ncbi.nlm.ni...
Null ppi.RMI1	View Gene Set	0.001091	6	0.03578	109	Protein-protein-interaction for RMI1	www.ncbi.nlm.ni...
Null ppi.YBX1	View Gene Set	0.001105	14	0.03578	111	Protein-protein-interaction for YBX1	www.ncbi.nlm.ni...
Null ppi.SNW1	View Gene Set	0.001135	39	0.0361	112	Protein-protein-interaction for SNW1	www.ncbi.nlm.ni...
Null ppi.NBN	View Gene Set	0.001132	16	0.0361	112	Protein-protein-interaction for NBN	www.ncbi.nlm.ni...
Null ppi.RUVBL1	View Gene Set	0.001157	41	0.03646	114	Protein-protein-interaction for RUVBL1	www.ncbi.nlm.ni...
Null ppi.CARM1	View Gene Set	0.001167	35	0.03649	115	Protein-protein-interaction for CARM1	www.ncbi.nlm.ni...
Null ppi.SMC2	View Gene Set	0.001194	6	0.03699	116	Protein-protein-interaction for SMC2	www.ncbi.nlm.ni...
Null ppi.ATXN2L	View Gene Set	0.00121	6	0.03708	117	Protein-protein-interaction for ATXN2L	www.ncbi.nlm.ni...
Null ppi.PLK1	View Gene Set	0.001217	22	0.03708	117	Protein-protein-interaction for PLK1	www.ncbi.nlm.ni...
Null ppi.EPHB6	View Gene Set	0.001264	6	0.03754	119	Protein-protein-interaction for EPHB6	www.ncbi.nlm.ni...
Null ppi.SMARCB1	View Gene Set	0.001261	33	0.03754	119	Protein-protein-interaction for SMARCB1	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	0.00126	88	0.03754	119	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.TSPYL2	View Gene Set	0.001318	11	0.03884	122	Protein-protein-interaction for TSPYL2	www.ncbi.nlm.ni...
Null ppi.HIST2H3C	View Gene Set	0.001334	31	0.03897	123	Protein-protein-interaction for HIST2H3C	www.ncbi.nlm.ni...
Null ppi.GRIA1	View Gene Set	0.001384	7	0.04012	124	Protein-protein-interaction for GRIA1	www.ncbi.nlm.ni...
Null ppi.HIST2H4A	View Gene Set	0.001437	17	0.04133	125	Protein-protein-interaction for HIST2H4A	www.ncbi.nlm.ni...
Null ppi.STK35	View Gene Set	0.001467	6	0.04183	126	Protein-protein-interaction for STK35	www.ncbi.nlm.ni...
Null ppi.PARP2	View Gene Set	0.001526	10	0.04286	127	Protein-protein-interaction for PARP2	www.ncbi.nlm.ni...
Null ppi.ASF1B	View Gene Set	0.00155	30	0.04286	127	Protein-protein-interaction for ASF1B	www.ncbi.nlm.ni...
Null ppi.USP7	View Gene Set	0.001541	32	0.04286	127	Protein-protein-interaction for USP7	www.ncbi.nlm.ni...
Null ppi.NR1H4	View Gene Set	0.001527	17	0.04286	127	Protein-protein-interaction for NR1H4	www.ncbi.nlm.ni...
Null ppi.72462	View Gene Set	0.00161	42	0.04416	131	Protein-protein-interaction for 72462	www.ncbi.nlm.ni...
Null ppi.FAN1	View Gene Set	0.001632	13	0.04444	132	Protein-protein-interaction for FAN1	www.ncbi.nlm.ni...
Null ppi.CHAF1A	View Gene Set	0.001685	21	0.04487	133	Protein-protein-interaction for CHAF1A	www.ncbi.nlm.ni...
Null ppi.CBX1	View Gene Set	0.001682	24	0.04487	133	Protein-protein-interaction for CBX1	www.ncbi.nlm.ni...
Null ppi.ATRIP	View Gene Set	0.001678	13	0.04487	133	Protein-protein-interaction for ATRIP	www.ncbi.nlm.ni...
Null ppi.HIST2H2BE	View Gene Set	0.001709	27	0.04517	136	Protein-protein-interaction for HIST2H2BE	www.ncbi.nlm.ni...
Null ppi.ARL5A	View Gene Set	0.001784	6	0.04612	137	Protein-protein-interaction for ARL5A	www.ncbi.nlm.ni...
Null ppi.CXXC1	View Gene Set	0.001797	14	0.04612	137	Protein-protein-interaction for CXXC1	www.ncbi.nlm.ni...
Null ppi.MYBL2	View Gene Set	0.001786	16	0.04612	137	Protein-protein-interaction for MYBL2	www.ncbi.nlm.ni...
Null ppi.TFDP1	View Gene Set	0.001796	10	0.04612	137	Protein-protein-interaction for TFDP1	www.ncbi.nlm.ni...
Null ppi.MIS12	View Gene Set	0.001843	9	0.04696	141	Protein-protein-interaction for MIS12	www.ncbi.nlm.ni...
Null ppi.SUPT16H	View Gene Set	0.001925	15	0.04822	142	Protein-protein-interaction for SUPT16H	www.ncbi.nlm.ni...
Null ppi.ILF3	View Gene Set	0.001919	7	0.04822	142	Protein-protein-interaction for ILF3	www.ncbi.nlm.ni...
Null ppi.ITGA5	View Gene Set	0.001932	14	0.04822	142	Protein-protein-interaction for ITGA5	www.ncbi.nlm.ni...
Null ppi.CDKN3	View Gene Set	0.001955	6	0.04847	145	Protein-protein-interaction for CDKN3	www.ncbi.nlm.ni...
Null ppi.MCM8	View Gene Set	0.001981	6	0.04877	146	Protein-protein-interaction for MCM8	www.ncbi.nlm.ni...
Null ppi.HNRNPL	View Gene Set	0.002022	9	0.04911	147	Protein-protein-interaction for HNRNPL	www.ncbi.nlm.ni...
Null ppi.TP73	View Gene Set	0.00201	38	0.04911	147	Protein-protein-interaction for TP73	www.ncbi.nlm.ni...
Null ppi.GAS7	View Gene Set	0.002049	11	0.04942	149	Protein-protein-interaction for GAS7	www.ncbi.nlm.ni...
Null ppi.850620	View Gene Set	0.002071	20	0.04963	150	Protein-protein-interaction for 850620	www.ncbi.nlm.ni...

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null FOXM1 transcription factor network	View Gene Set	5.397e-10	42	1.004e-07	1	NCI_NATURE - FOXM1 transcription factor network gene set	www.pathwaycomm...
Null Aurora B signaling	View Gene Set	7.375e-08	41	6.859e-06	2	NCI_NATURE - Aurora B signaling gene set	www.pathwaycomm...
Null Validated targets of C-MYC transcriptional activation	View Gene Set	1.586e-07	80	9.832e-06	3	NCI_NATURE - Validated targets of C-MYC transcriptional activation gene set	www.pathwaycomm...
Null E2F transcription factor network	View Gene Set	1.302e-05	73	0.000519	4	NCI_NATURE - E2F transcription factor network gene set	www.pathwaycomm...
Null BARD1 signaling events	View Gene Set	1.395e-05	29	0.000519	4	NCI_NATURE - BARD1 signaling events gene set	www.pathwaycomm...
Null C-MYC pathway	View Gene Set	5.548e-05	149	0.00172	6	NCI_NATURE - C-MYC pathway gene set	www.pathwaycomm...
Null S1P1 pathway	View Gene Set	0.001084	71	0.02881	7	NCI_NATURE - S1P1 pathway gene set	www.pathwaycomm...
Null Nectin adhesion pathway	View Gene Set	0.002079	126	0.04834	8	NCI_NATURE - Nectin adhesion pathway gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null DNA strand elongation	View Gene Set	5.686e-16	31	6.351e-13	1	REACTOME - DNA strand elongation gene set	www.pathwaycomm...
Null G2/M Checkpoints	View Gene Set	5.2e-14	43	2.904e-11	2	REACTOME - G2/M Checkpoints gene set	www.pathwaycomm...
Null Activation of ATR in response to replication stress	View Gene Set	5.189e-13	37	1.932e-10	3	REACTOME - Activation of ATR in response to replication stress gene set	www.pathwaycomm...
Null Cell Cycle Mitotic	View Gene Set	7.971e-13	312	2.226e-10	4	REACTOME - Cell Cycle Mitotic gene set	www.pathwaycomm... Mitotic&format=...
Null Telomere C-strand (Lagging Strand) Synthesis	View Gene Set	4.895e-12	22	1.094e-09	5	REACTOME - Telomere C-strand (Lagging Strand) Synthesis gene set	www.pathwaycomm...
Null Activation of the pre-replicative complex	View Gene Set	9.31e-12	30	1.733e-09	6	REACTOME - Activation of the pre-replicative complex gene set	www.pathwaycomm...
Null Chromosome Maintenance	View Gene Set	1.42e-11	69	2.265e-09	7	REACTOME - Chromosome Maintenance gene set	www.pathwaycomm...
Null Lagging Strand Synthesis	View Gene Set	4.393e-11	20	6.133e-09	8	REACTOME - Lagging Strand Synthesis gene set	www.pathwaycomm...
Null E2F mediated regulation of DNA replication	View Gene Set	3.861e-10	28	4.792e-08	9	REACTOME - E2F mediated regulation of DNA replication gene set	www.pathwaycomm...
Null Extension of Telomeres	View Gene Set	1.074e-09	28	1.2e-07	10	REACTOME - Extension of Telomeres gene set	www.pathwaycomm...
Null M Phase	View Gene Set	2.152e-09	90	2.186e-07	11	REACTOME - M Phase gene set	www.pathwaycomm...
Null G1/S-Specific Transcription	View Gene Set	4.223e-09	16	3.931e-07	12	REACTOME - G1/S-Specific Transcription gene set	www.pathwaycomm...
Null DNA Replication	View Gene Set	5.173e-09	200	4.445e-07	13	REACTOME - DNA Replication gene set	www.pathwaycomm...
Null Mitotic Prometaphase	View Gene Set	6.802e-09	86	5.427e-07	14	REACTOME - Mitotic Prometaphase gene set	www.pathwaycomm...
Null G2/M DNA damage checkpoint	View Gene Set	7.974e-09	29	5.527e-07	15	REACTOME - G2/M DNA damage checkpoint gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in TC-NER	View Gene Set	8.412e-09	16	5.527e-07	15	REACTOME - Gap-filling DNA repair synthesis and ligation in TC-NER gene set	www.pathwaycomm...
Null Gap-filling DNA repair synthesis and ligation in GG-NER	View Gene Set	8.412e-09	16	5.527e-07	15	REACTOME - Gap-filling DNA repair synthesis and ligation in GG-NER gene set	www.pathwaycomm...
Null Repair synthesis for gap-filling by DNA polymerase in TC-NER	View Gene Set	2.761e-08	15	1.623e-06	18	REACTOME - Repair synthesis for gap-filling by DNA polymerase in TC-NER gene set	www.pathwaycomm...
Null Repair synthesis of patch ~27-30 bases long by DNA polymerase	View Gene Set	2.761e-08	15	1.623e-06	18	REACTOME - Repair synthesis of patch ~27-30 bases long by DNA polymerase gene set	www.pathwaycomm...
Null Polymerase switching on the C-strand of the telomere	View Gene Set	3.741e-08	14	1.817e-06	20	REACTOME - Polymerase switching on the C-strand of the telomere gene set	www.pathwaycomm...
Null Polymerase switching	View Gene Set	3.741e-08	14	1.817e-06	20	REACTOME - Polymerase switching gene set	www.pathwaycomm...
Null Leading Strand Synthesis	View Gene Set	3.741e-08	14	1.817e-06	20	REACTOME - Leading Strand Synthesis gene set	www.pathwaycomm...
Null Processive synthesis on the lagging strand	View Gene Set	3.665e-08	15	1.817e-06	20	REACTOME - Processive synthesis on the lagging strand gene set	www.pathwaycomm...
Null DNA Repair	View Gene Set	8.566e-08	108	3.987e-06	24	REACTOME - DNA Repair gene set	www.pathwaycomm...
Null Telomere Maintenance	View Gene Set	9.429e-08	49	4.213e-06	25	REACTOME - Telomere Maintenance gene set	www.pathwaycomm...
Null Removal of the Flap Intermediate	View Gene Set	1.203e-07	14	5.17e-06	26	REACTOME - Removal of the Flap Intermediate gene set	www.pathwaycomm...
Null Double-Strand Break Repair	View Gene Set	1.769e-07	27	7.317e-06	27	REACTOME - Double-Strand Break Repair gene set	www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA	View Gene Set	5.348e-07	138	2.134e-05	28	REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set	www.pathwaycomm...
Null mRNA Processing	View Gene Set	8.138e-07	158	3.134e-05	29	REACTOME - mRNA Processing gene set	www.pathwaycomm...
Null Unwinding of DNA	View Gene Set	1.334e-06	11	4.965e-05	30	REACTOME - Unwinding of DNA gene set	www.pathwaycomm...
Null mRNA Splicing - Major Pathway	View Gene Set	2.159e-06	107	7.092e-05	31	REACTOME - mRNA Splicing - Major Pathway gene set	www.pathwaycomm...
Null mRNA Splicing	View Gene Set	2.159e-06	107	7.092e-05	31	REACTOME - mRNA Splicing gene set	www.pathwaycomm...
Null Homologous Recombination Repair	View Gene Set	2.147e-06	22	7.092e-05	31	REACTOME - Homologous Recombination Repair gene set	www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks	View Gene Set	2.147e-06	22	7.092e-05	31	REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set	www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript	View Gene Set	3.728e-06	185	0.000119	35	REACTOME - Formation and Maturation of mRNA Transcript gene set	www.pathwaycomm...
Null Processive synthesis on the C-strand of the telomere	View Gene Set	5.717e-06	11	0.0001774	36	REACTOME - Processive synthesis on the C-strand of the telomere gene set	www.pathwaycomm...
Null Mitotic M-M/G1 phases	View Gene Set	1.159e-05	180	0.00035	37	REACTOME - Mitotic M-M/G1 phases gene set	www.pathwaycomm...
Null Meiotic Recombination	View Gene Set	1.47e-05	42	0.0004321	38	REACTOME - Meiotic Recombination gene set	www.pathwaycomm...
Null Removal of the Flap Intermediate from the C-strand	View Gene Set	1.887e-05	10	0.0005404	39	REACTOME - Removal of the Flap Intermediate from the C-strand gene set	www.pathwaycomm...
Null Inhibition of replication initiation of damaged DNA by Rb/E2F1	View Gene Set	2.371e-05	7	0.0006622	40	REACTOME - Inhibition of replication initiation of damaged DNA by Rb/E2F1 gene set	www.pathwaycomm...
Null Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex	View Gene Set	3.1e-05	6	0.0008446	41	REACTOME - Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex gene set	www.pathwaycomm...
Null Global Genomic NER (GG-NER)	View Gene Set	4.057e-05	35	0.001079	42	REACTOME - Global Genomic NER (GG-NER) gene set	www.pathwaycomm...
Null Transcription-coupled NER (TC-NER)	View Gene Set	7.175e-05	45	0.001864	43	REACTOME - Transcription-coupled NER (TC-NER) gene set	www.pathwaycomm...
Null Telomere C-strand synthesis initiation	View Gene Set	8.409e-05	6	0.002087	44	REACTOME - Telomere C-strand synthesis initiation gene set	www.pathwaycomm...
Null DNA replication initiation	View Gene Set	8.409e-05	6	0.002087	44	REACTOME - DNA replication initiation gene set	www.pathwaycomm...
Null Post-Elongation Processing of the Transcript	View Gene Set	9.323e-05	43	0.002146	46	REACTOME - Post-Elongation Processing of the Transcript gene set	www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region	View Gene Set	9.323e-05	43	0.002146	46	REACTOME - Cleavage of Growing Transcript in the Termination Region gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription Termination	View Gene Set	9.323e-05	43	0.002146	46	REACTOME - RNA Polymerase II Transcription Termination gene set	www.pathwaycomm...
Null Cyclin A/B1 associated events during G2/M transition	View Gene Set	9.503e-05	19	0.002146	46	REACTOME - Cyclin A/B1 associated events during G2/M transition gene set	www.pathwaycomm...
Null Phosphorylation of Emi1	View Gene Set	9.606e-05	12	0.002146	46	REACTOME - Phosphorylation of Emi1 gene set	www.pathwaycomm...
Null Nucleotide Excision Repair	View Gene Set	0.0001156	51	0.002532	51	REACTOME - Nucleotide Excision Repair gene set	www.pathwaycomm...
Null Homologous DNA pairing and strand exchange	View Gene Set	0.0001195	7	0.002567	52	REACTOME - Homologous DNA pairing and strand exchange gene set	www.pathwaycomm...
Null Mitotic G2-G2/M phases	View Gene Set	0.0001332	98	0.002806	53	REACTOME - Mitotic G2-G2/M phases gene set	www.pathwaycomm...
Null Deposition of New CENPA-containing Nucleosomes at the Centromere	View Gene Set	0.0001805	35	0.003609	54	REACTOME - Deposition of New CENPA-containing Nucleosomes at the Centromere gene set	www.pathwaycomm...
Null Nucleosome assembly	View Gene Set	0.0001805	35	0.003609	54	REACTOME - Nucleosome assembly gene set	www.pathwaycomm...
Null Fanconi Anemia pathway	View Gene Set	0.0001809	22	0.003609	54	REACTOME - Fanconi Anemia pathway gene set	www.pathwaycomm...
Null G2/M DNA replication checkpoint	View Gene Set	0.0002125	5	0.004124	57	REACTOME - G2/M DNA replication checkpoint gene set	www.pathwaycomm...
Null G2/M Transition	View Gene Set	0.0002141	96	0.004124	57	REACTOME - G2/M Transition gene set	www.pathwaycomm...
Null Cyclin B2 mediated events	View Gene Set	0.0002292	5	0.004339	59	REACTOME - Cyclin B2 mediated events gene set	www.pathwaycomm...
Null Early Phase of HIV Life Cycle	View Gene Set	0.0002799	11	0.00521	60	REACTOME - Early Phase of HIV Life Cycle gene set	www.pathwaycomm...
Null Kinesins	View Gene Set	0.0003004	22	0.005501	61	REACTOME - Kinesins gene set	www.pathwaycomm...
Null Presynaptic phase of homologous DNA pairing and strand exchange	View Gene Set	0.0003911	6	0.006935	62	REACTOME - Presynaptic phase of homologous DNA pairing and strand exchange gene set	www.pathwaycomm...
Null Pyrimidine metabolism	View Gene Set	0.0003886	23	0.006935	62	REACTOME - Pyrimidine metabolism gene set	www.pathwaycomm...
Null PKA activation	View Gene Set	0.0004648	19	0.008112	64	REACTOME - PKA activation gene set	www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm	View Gene Set	0.0005064	55	0.008703	65	REACTOME - Transport of Mature Transcript to Cytoplasm gene set	www.pathwaycomm...
Null Polo-like kinase mediated events	View Gene Set	0.0005628	10	0.009525	66	REACTOME - Polo-like kinase mediated events gene set	www.pathwaycomm...
Null Pyrimidine biosynthesis	View Gene Set	0.0005782	6	0.009639	67	REACTOME - Pyrimidine biosynthesis gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA	View Gene Set	0.0008176	34	0.01324	68	REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set	www.pathwaycomm...
Null mRNA 3'-end processing	View Gene Set	0.0008176	34	0.01324	68	REACTOME - mRNA 3'-end processing gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intronless pre-mRNA	View Gene Set	0.0009673	23	0.01522	70	REACTOME - Post-Elongation Processing of Intronless pre-mRNA gene set	www.pathwaycomm...
Null Processing of Capped Intronless Pre-mRNA	View Gene Set	0.0009673	23	0.01522	70	REACTOME - Processing of Capped Intronless Pre-mRNA gene set	www.pathwaycomm...
Null Integration of provirus	View Gene Set	0.001022	8	0.01586	72	REACTOME - Integration of provirus gene set	www.pathwaycomm...
Null Phosphorylation of proteins involved in G1/S transition by active Cyclin E:Cdk2 complexes	View Gene Set	0.001113	4	0.01703	73	REACTOME - Phosphorylation of proteins involved in G1/S transition by active Cyclin E:Cdk2 complexes gene set	www.pathwaycomm...
Null PKA-mediated phosphorylation of CREB	View Gene Set	0.001189	20	0.01794	74	REACTOME - PKA-mediated phosphorylation of CREB gene set	www.pathwaycomm...
Null Platelet degranulation	View Gene Set	0.001337	32	0.01992	75	REACTOME - Platelet degranulation gene set	www.pathwaycomm...
Null Assembly of the RAD51-ssDNA nucleoprotein complex	View Gene Set	0.00145	5	0.02132	76	REACTOME - Assembly of the RAD51-ssDNA nucleoprotein complex gene set	www.pathwaycomm...
Null PLC-gamma1 signalling	View Gene Set	0.001475	31	0.0214	77	REACTOME - PLC-gamma1 signalling gene set	www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript	View Gene Set	0.00154	51	0.02206	78	REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set	www.pathwaycomm...
Null Resolution of D-loop structures through Holliday junction intermediates	View Gene Set	0.001643	6	0.02266	79	REACTOME - Resolution of D-loop structures through Holliday junction intermediates gene set	www.pathwaycomm...
Null Resolution of D-loop structures	View Gene Set	0.001643	6	0.02266	79	REACTOME - Resolution of D-loop structures gene set	www.pathwaycomm...
Null Mitotic G1-G1/S phases	View Gene Set	0.001634	113	0.02266	79	REACTOME - Mitotic G1-G1/S phases gene set	www.pathwaycomm...
Null HIV Life Cycle	View Gene Set	0.001707	103	0.02326	82	REACTOME - HIV Life Cycle gene set	www.pathwaycomm...
Null Transmembrane transport of small molecules	View Gene Set	0.001832	367	0.02465	83	REACTOME - Transmembrane transport of small molecules gene set	www.pathwaycomm...
Null Metabolism of carbohydrates	View Gene Set	0.001897	93	0.02523	84	REACTOME - Metabolism of carbohydrates gene set	www.pathwaycomm...
Null Ca-dependent events	View Gene Set	0.002431	27	0.03137	85	REACTOME - Ca-dependent events gene set	www.pathwaycomm...
Null G-protein mediated events	View Gene Set	0.002443	40	0.03137	85	REACTOME - G-protein mediated events gene set	www.pathwaycomm...
Null G1/S Transition	View Gene Set	0.002395	104	0.03137	85	REACTOME - G1/S Transition gene set	www.pathwaycomm...
Null RNA Polymerase I Promoter Opening	View Gene Set	0.00259	31	0.03287	88	REACTOME - RNA Polymerase I Promoter Opening gene set	www.pathwaycomm...
Null PKA activation in glucagon signalling	View Gene Set	0.002794	17	0.03392	89	REACTOME - PKA activation in glucagon signalling gene set	www.pathwaycomm...
Null Interactions of Rev with host cellular proteins	View Gene Set	0.00276	33	0.03392	89	REACTOME - Interactions of Rev with host cellular proteins gene set	www.pathwaycomm...
Null Calmodulin induced events	View Gene Set	0.002786	25	0.03392	89	REACTOME - Calmodulin induced events gene set	www.pathwaycomm...
Null CaM pathway	View Gene Set	0.002786	25	0.03392	89	REACTOME - CaM pathway gene set	www.pathwaycomm...
Null Notch receptor binds with a ligand	View Gene Set	0.003047	8	0.0366	93	REACTOME - Notch receptor binds with a ligand gene set	www.pathwaycomm...
Null Adenylate cyclase inhibitory pathway	View Gene Set	0.003281	13	0.03858	94	REACTOME - Adenylate cyclase inhibitory pathway gene set	www.pathwaycomm...
Null Inhibition of adenylate cyclase pathway	View Gene Set	0.003281	13	0.03858	94	REACTOME - Inhibition of adenylate cyclase pathway gene set	www.pathwaycomm...
Null Rev-mediated nuclear export of HIV-1 RNA	View Gene Set	0.003949	32	0.04594	96	REACTOME - Rev-mediated nuclear export of HIV-1 RNA gene set	www.pathwaycomm...
Null 2-LTR circle formation	View Gene Set	0.004105	7	0.04726	97	REACTOME - 2-LTR circle formation gene set	www.pathwaycomm...
Null eNOS activation	View Gene Set	0.004147	9	0.04726	97	REACTOME - eNOS activation gene set	www.pathwaycomm...
Null PLC beta mediated events	View Gene Set	0.004366	39	0.04927	99	REACTOME - PLC beta mediated events gene set	www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: tarbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-613	View Gene Set	5.611e-17	1335	3.799e-14	1	microRNA targets for hsa-miR-613 from miranda.targets	www.mirbase.org...
Null hsa-miR-206	View Gene Set	2.937e-16	1605	9.941e-14	2	microRNA targets for hsa-miR-206 from miranda.targets	www.mirbase.org...
Null hsa-miR-1	View Gene Set	4.724e-13	1772	1.066e-10	3	microRNA targets for hsa-miR-1 from miranda.targets	www.mirbase.org...
Null hsa-miR-1207-5p	View Gene Set	4.81e-05	2608	0.007339	4	microRNA targets for hsa-miR-1207-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-608	View Gene Set	5.421e-05	2815	0.007339	4	microRNA targets for hsa-miR-608 from miranda.targets	www.mirbase.org...
Null hsa-miR-940	View Gene Set	0.0001013	1873	0.01143	6	microRNA targets for hsa-miR-940 from miranda.targets	www.mirbase.org...
Null hsa-miR-330-5p	View Gene Set	0.0002869	1945	0.02775	7	microRNA targets for hsa-miR-330-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	0.0004202	1921	0.03556	8	microRNA targets for hsa-miR-486-3p from miranda.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-206	View Gene Set	1.522e-12	683	1.082e-09	1	microRNA targets for hsa-miR-206 from mirbase.targets	www.mirbase.org...
Null hsa-miR-613	View Gene Set	3.905e-11	707	1.388e-08	2	microRNA targets for hsa-miR-613 from mirbase.targets	www.mirbase.org...
Null hsa-miR-1	View Gene Set	3.663e-10	659	8.681e-08	3	microRNA targets for hsa-miR-1 from mirbase.targets	www.mirbase.org...
Null hsa-miR-483-3p	View Gene Set	2.598e-05	702	0.004618	4	microRNA targets for hsa-miR-483-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-339-5p	View Gene Set	5.46e-05	659	0.00647	5	microRNA targets for hsa-miR-339-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-663	View Gene Set	4.65e-05	743	0.00647	5	microRNA targets for hsa-miR-663 from mirbase.targets	www.mirbase.org...
Null hsa-miR-608	View Gene Set	6.539e-05	729	0.006642	7	microRNA targets for hsa-miR-608 from mirbase.targets	www.mirbase.org...
Null hsa-miR-122	View Gene Set	0.0002635	695	0.02342	8	microRNA targets for hsa-miR-122 from mirbase.targets	www.mirbase.org...
Null hsa-miR-296-5p	View Gene Set	0.000381	755	0.0301	9	microRNA targets for hsa-miR-296-5p from mirbase.targets	www.mirbase.org...
Null hsa-let-7b	View Gene Set	0.0005188	775	0.03688	10	microRNA targets for hsa-let-7b from mirbase.targets	www.mirbase.org...
Null hsa-miR-658	View Gene Set	0.0006952	660	0.04493	11	microRNA targets for hsa-miR-658 from mirbase.targets	www.mirbase.org...
Null hsa-miR-328	View Gene Set	0.0007924	685	0.04695	12	microRNA targets for hsa-miR-328 from mirbase.targets	www.mirbase.org...
Null hsa-miR-744	View Gene Set	0.0008931	715	0.04885	13	microRNA targets for hsa-miR-744 from mirbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-206	View Gene Set	4.833e-31	358	2.673e-28	1	microRNA targets for hsa-miR-206 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-1	View Gene Set	1.936e-29	342	5.352e-27	2	microRNA targets for hsa-miR-1 from mirtarget2.targets	www.mirbase.org...
Null hsa-miR-613	View Gene Set	1.046e-25	322	1.927e-23	3	microRNA targets for hsa-miR-613 from mirtarget2.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-206	View Gene Set	2.086e-35	404	3.713e-33	1	microRNA targets for hsa-miR-206 from pictar.targets	www.mirbase.org...
Null hsa-miR-1	View Gene Set	1.946e-34	408	1.732e-32	2	microRNA targets for hsa-miR-1 from pictar.targets	www.mirbase.org...
Null hsa-miR-331	View Gene Set	4.531e-05	194	0.002689	3	microRNA targets for hsa-miR-331 from pictar.targets	www.mirbase.org...
Null hsa-miR-122a	View Gene Set	0.0002264	114	0.01007	4	microRNA targets for hsa-miR-122a from pictar.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-1	View Gene Set	4.018e-33	149	2.049e-31	1	microRNA targets for hsa-miR-1 from tarbase.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-1	View Gene Set	6.508e-57	583	5.293e-55	1	microRNA targets for hsa-miR-1 from targetscan.targets	www.mirbase.org...
Null hsa-miR-206	View Gene Set	6.508e-57	583	5.293e-55	1	microRNA targets for hsa-miR-206 from targetscan.targets	www.mirbase.org...
Null hsa-miR-613	View Gene Set	6.508e-57	583	5.293e-55	1	microRNA targets for hsa-miR-613 from targetscan.targets	www.mirbase.org...
Null hsa-miR-326	View Gene Set	0.0003495	275	0.01706	4	microRNA targets for hsa-miR-326 from targetscan.targets	www.mirbase.org...
Null hsa-miR-330-5p	View Gene Set	0.0003495	275	0.01706	4	microRNA targets for hsa-miR-330-5p from targetscan.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	3.59e-24	203	7.373e-21	1	microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.pictar.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	3.109e-22	198	3.193e-19	2	microRNA targets for miranda.pictar.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	9.3e-22	132	5.132e-19	3	microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	9.994e-22	120	5.132e-19	3	microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	1.826e-20	135	7.5e-18	5	microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	2.805e-20	113	9.601e-18	6	microRNA targets for mirtarget2.pictar.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-1	View Gene Set	1.623e-19	109	4.762e-17	7	microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-206	View Gene Set	2.418e-19	110	6.207e-17	8	microRNA targets for miranda.mirtarget2.pictar.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-613	View Gene Set	1.407e-18	116	3.211e-16	9	microRNA targets for miranda.mirtarget2.targetscan.targetsIntersection.hsa-miR-613 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	6.718e-18	62	1.38e-15	10	microRNA targets for mirbase.pictar.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	9.177e-18	55	1.672e-15	11	microRNA targets for mirbase.pictar.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	9.77e-18	47	1.672e-15	11	microRNA targets for pictar.tarbase.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-1	View Gene Set	1.397e-17	54	2.208e-15	13	microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.pictar.targetsIntersection.hsa-miR-206	View Gene Set	3.007e-16	57	4.412e-14	14	microRNA targets for miranda.mirbase.pictar.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	1.776e-15	68	2.432e-13	15	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	1.185e-14	64	1.432e-12	16	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.pictar.tarbase.targetsIntersection.hsa-miR-1	View Gene Set	1.152e-14	35	1.432e-12	16	microRNA targets for miranda.pictar.tarbase.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.tarbase.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	1.532e-14	37	1.748e-12	18	microRNA targets for miranda.tarbase.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-1	View Gene Set	2.244e-14	54	2.426e-12	19	microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsIntersection.hsa-miR-1	View Gene Set	6.238e-14	34	6.407e-12	20	microRNA targets for miranda.mirtarget2.tarbase.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-1	View Gene Set	1.798e-13	34	1.759e-11	21	microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-206	View Gene Set	1.392e-12	50	1.3e-10	22	microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	1.971e-12	39	1.76e-10	23	microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-206	View Gene Set	9.383e-12	44	8.03e-10	24	microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-206	View Gene Set	1.177e-11	36	9.673e-10	25	microRNA targets for mirbase.mirtarget2.pictar.targetsIntersection.hsa-miR-206 from miRNAtargetIntersection	www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsIntersection.hsa-miR-1	View Gene Set	1.836e-11	34	1.45e-09	26	microRNA targets for mirtarget2.pictar.tarbase.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	4.725e-11	32	3.595e-09	27	microRNA targets for mirtarget2.tarbase.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsIntersection.hsa-miR-1	View Gene Set	1.426e-10	18	1.046e-08	28	microRNA targets for mirbase.tarbase.targetscan.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsIntersection.hsa-miR-613	View Gene Set	2.669e-10	55	1.891e-08	29	microRNA targets for miranda.mirbase.targetscan.targetsIntersection.hsa-miR-613 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-613	View Gene Set	1.915e-09	36	1.311e-07	30	microRNA targets for mirbase.mirtarget2.targetscan.targetsIntersection.hsa-miR-613 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsIntersection.hsa-miR-1	View Gene Set	3.084e-09	14	2.043e-07	31	microRNA targets for miranda.mirbase.tarbase.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-613	View Gene Set	3.116e-08	47	2e-06	32	microRNA targets for miranda.mirbase.mirtarget2.targetsIntersection.hsa-miR-613 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsIntersection.hsa-miR-1	View Gene Set	7.469e-08	14	4.649e-06	33	microRNA targets for mirbase.mirtarget2.tarbase.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsIntersection.hsa-miR-1	View Gene Set	7.742e-08	13	4.677e-06	34	microRNA targets for mirbase.pictar.tarbase.targetsIntersection.hsa-miR-1 from miRNAtargetIntersection	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	2.508e-71	832	5.804e-68	1	microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	3.532e-68	783	4.086e-65	2	microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-206	View Gene Set	4.417e-64	867	2.664e-61	3	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	4.604e-64	768	2.664e-61	3	microRNA targets for mirtarget2.tarbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-1	View Gene Set	6.449e-63	860	2.985e-60	5	microRNA targets for mirtarget2.pictar.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null pictar.tarbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	3.245e-59	702	1.251e-56	6	microRNA targets for pictar.tarbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-1	View Gene Set	4.84e-52	703	1.6e-49	7	microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	3.429e-51	1233	9.919e-49	8	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-613	View Gene Set	3.075e-49	1353	7.906e-47	9	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-613 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-206	View Gene Set	1.195e-48	1315	2.764e-46	10	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-206	View Gene Set	4.793e-47	1275	1.008e-44	11	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	1.437e-45	1175	2.772e-43	12	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-206	View Gene Set	2.844e-45	632	5.062e-43	13	microRNA targets for mirtarget2.pictar.tarbase.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-1	View Gene Set	6.815e-45	1281	1.126e-42	14	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-1	View Gene Set	1.075e-43	1256	1.658e-41	15	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-613	View Gene Set	3.182e-36	1685	4.603e-34	16	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-613 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-613	View Gene Set	4.737e-35	2082	6.447e-33	17	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-613 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-206	View Gene Set	1.451e-34	1189	1.865e-32	18	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-1	View Gene Set	2.119e-33	1078	2.581e-31	19	microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-206	View Gene Set	6.081e-33	1942	7.035e-31	20	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-206	View Gene Set	7.898e-33	1924	8.703e-31	21	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	2.177e-31	2269	2.29e-29	22	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-1	View Gene Set	4.788e-31	1160	4.817e-29	23	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-206	View Gene Set	2.252e-30	1845	2.172e-28	24	microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-1	View Gene Set	2.584e-30	1008	2.392e-28	25	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.tarbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	8.92e-30	2072	7.939e-28	26	microRNA targets for miranda.tarbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-206	View Gene Set	9.312e-30	1015	7.981e-28	27	microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-206	View Gene Set	5.944e-28	1890	4.912e-26	28	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-1	View Gene Set	8.061e-28	2071	6.432e-26	29	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-1	View Gene Set	1.116e-27	2092	8.609e-26	30	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-206	View Gene Set	3.757e-27	2208	2.804e-25	31	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-206	View Gene Set	2.737e-26	961	1.979e-24	32	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-1	View Gene Set	1.645e-25	2393	1.154e-23	33	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-206	View Gene Set	6.959e-25	1776	4.736e-23	34	microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.tarbase.targetsUnion.hsa-miR-1	View Gene Set	7.827e-25	2000	5.175e-23	35	microRNA targets for miranda.pictar.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-613	View Gene Set	2.111e-23	1959	1.357e-21	36	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-613 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-206	View Gene Set	6.416e-23	2162	4.013e-21	37	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-1	View Gene Set	6.849e-23	2033	4.171e-21	38	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-1	View Gene Set	3.681e-22	2328	2.184e-20	39	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-1	View Gene Set	4.668e-22	1979	2.7e-20	40	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-1	View Gene Set	3.985e-21	2270	2.249e-19	41	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-206	View Gene Set	4.359e-21	1745	2.402e-19	42	microRNA targets for miranda.mirtarget2.tarbase.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-206	View Gene Set	1.384e-20	2057	7.448e-19	43	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-206 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-1	View Gene Set	4.283e-18	2285	2.253e-16	44	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-1 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608	View Gene Set	5.021e-07	3384	2.582e-05	45	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744	View Gene Set	5.533e-06	1378	0.0002783	46	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	7.439e-06	2574	0.0003586	47	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326	View Gene Set	7.307e-06	1065	0.0003586	47	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940	View Gene Set	2.305e-05	2504	0.001088	49	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p	View Gene Set	2.464e-05	2597	0.00114	50	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p	View Gene Set	2.622e-05	1519	0.001185	51	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p	View Gene Set	2.662e-05	2545	0.001185	51	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-326	View Gene Set	2.992e-05	2156	0.001306	53	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326	View Gene Set	4.893e-05	2147	0.002097	54	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	6.427e-05	2177	0.002704	55	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	7.028e-05	1142	0.002904	56	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-326	View Gene Set	9.526e-05	2171	0.00384	57	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-328	View Gene Set	9.626e-05	916	0.00384	57	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.000122	1071	0.004786	59	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p	View Gene Set	0.0001725	1790	0.006654	60	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-let-7b	View Gene Set	0.0002154	977	0.008172	61	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328	View Gene Set	0.0002705	946	0.0101	62	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.000319	1789	0.01172	63	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p	View Gene Set	0.0003785	2496	0.01369	64	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663	View Gene Set	0.0004028	1582	0.01434	65	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675	View Gene Set	0.0004334	1108	0.0152	66	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p	View Gene Set	0.0007036	1899	0.0243	67	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.0008428	1813	0.02868	68	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-326	View Gene Set	0.0009456	1819	0.03171	69	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650	View Gene Set	0.001209	2314	0.03939	70	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-122	View Gene Set	0.001196	868	0.03939	70	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-122 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p	View Gene Set	0.001234	1764	0.03965	72	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p	View Gene Set	0.00134	1865	0.04247	73	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-765	View Gene Set	0.001412	3105	0.04416	74	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-765 from miRNAtargetUnion	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null EGFR1	View Gene Set	0.00044	105	0.01056	1	From NetPath for EGFR1	www.netpath.org...
Null TSH	View Gene Set	0.002496	48	0.02995	2	From NetPath for TSH	www.netpath.org...

Results

AFA results for: miR.206vsControl.ls

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: GO

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.BIOCARTA

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.nci-nature

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirtarget2.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: tarbase.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: targetscan.targets

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetIntersection

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: hprdManual.UP

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: tfbsK3Z3

Arguments: refPop=all, featureType=ENTREZID, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down