AFA results for: tdrugda2PC3

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Go to: Gene Set Collection: miRNAtargetUnion

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
KEGG 05322	View Gene Set	3.044e-10	141	6.515e-08	1	Systemic lupus erythematosus	www.genome.jp/d...
KEGG 03040	View Gene Set	2.179e-09	128	2.332e-07	2	Spliceosome	www.genome.jp/d...
KEGG 03030	View Gene Set	0.0001884	36	0.01009	3	DNA replication	www.genome.jp/d...
KEGG 03440	View Gene Set	0.0001885	28	0.01009	3	Homologous recombination	www.genome.jp/d...
KEGG 03420	View Gene Set	0.0002547	44	0.0109	5	Nucleotide excision repair	www.genome.jp/d...
KEGG 04510	View Gene Set	0.001036	201	0.03693	6	Focal adhesion	www.genome.jp/d...
KEGG 05412	View Gene Set	0.001364	76	0.0417	7	Arrhythmogenic right ventricular cardiomyopathy (ARVC)	www.genome.jp/d...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
GO GO:0044428	View Gene Set	4.022e-25	1938	5.373e-21	1	nuclear part	amigo.geneontol...
GO GO:0005634	View Gene Set	1.159e-24	5198	7.742e-21	2	nucleus	amigo.geneontol...
GO GO:0008380	View Gene Set	7.636e-21	300	3.401e-17	3	RNA splicing	amigo.geneontol...
GO GO:0090304	View Gene Set	1.786e-19	3724	5.967e-16	4	nucleic acid metabolic process	amigo.geneontol...
GO GO:0006139	View Gene Set	2.528e-18	4294	4.947e-15	5	nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0006396	View Gene Set	2.592e-18	578	4.947e-15	5	RNA processing	amigo.geneontol...
GO GO:0006397	View Gene Set	1.858e-18	317	4.947e-15	5	mRNA processing	amigo.geneontol...
GO GO:0003676	View Gene Set	7.514e-18	2979	1.255e-14	8	nucleic acid binding	amigo.geneontol...
GO GO:0031981	View Gene Set	4.782e-17	1518	7.098e-14	9	nuclear lumen	amigo.geneontol...
GO GO:0010467	View Gene Set	1.938e-16	3806	2.589e-13	10	gene expression	amigo.geneontol...
GO GO:0016071	View Gene Set	2.932e-16	381	3.561e-13	11	mRNA metabolic process	amigo.geneontol...
GO GO:0034641	View Gene Set	5.511e-16	4584	6.136e-13	12	cellular nitrogen compound metabolic process	amigo.geneontol...
GO GO:0003723	View Gene Set	8.352e-16	732	8.583e-13	13	RNA binding	amigo.geneontol...
GO GO:0006807	View Gene Set	1.794e-14	4698	1.712e-11	14	nitrogen compound metabolic process	amigo.geneontol...
GO GO:0016070	View Gene Set	4.138e-14	2596	3.686e-11	15	RNA metabolic process	amigo.geneontol...
GO GO:0000375	View Gene Set	4.467e-14	106	3.73e-11	16	RNA splicing via transesterification reactions	amigo.geneontol...
GO GO:0005694	View Gene Set	6.884e-14	507	5.109e-11	17	chromosome	amigo.geneontol...
GO GO:0043233	View Gene Set	6.851e-14	1881	5.109e-11	17	organelle lumen	amigo.geneontol...
GO GO:0070013	View Gene Set	1.411e-13	1845	9.923e-11	19	intracellular organelle lumen	amigo.geneontol...
GO GO:0000377	View Gene Set	3.465e-13	97	2.205e-10	20	RNA splicing via transesterification reactions with bulged adenosine as nucleophile	amigo.geneontol...
GO GO:0000398	View Gene Set	3.465e-13	97	2.205e-10	20	nuclear mRNA splicing via spliceosome	amigo.geneontol...
GO GO:0031974	View Gene Set	7.912e-13	1917	4.805e-10	22	membrane-enclosed lumen	amigo.geneontol...
GO GO:0044260	View Gene Set	1.088e-12	5699	6.319e-10	23	cellular macromolecule metabolic process	amigo.geneontol...
GO GO:0005654	View Gene Set	3.393e-12	939	1.889e-09	24	nucleoplasm	amigo.geneontol...
GO GO:0032991	View Gene Set	1.997e-11	3237	1.067e-08	25	macromolecular complex	amigo.geneontol...
GO GO:0030529	View Gene Set	2.357e-11	504	1.211e-08	26	ribonucleoprotein complex	amigo.geneontol...
GO GO:0005681	View Gene Set	1.368e-10	135	6.771e-08	27	spliceosomal complex	amigo.geneontol...
GO GO:0043170	View Gene Set	2.516e-10	6274	1.201e-07	28	macromolecule metabolic process	amigo.geneontol...
GO GO:0003677	View Gene Set	6.068e-10	2028	2.795e-07	29	DNA binding	amigo.geneontol...
GO GO:0044427	View Gene Set	1.048e-09	420	4.667e-07	30	chromosomal part	amigo.geneontol...
GO GO:0043228	View Gene Set	2.883e-09	2690	1.204e-06	31	non-membrane-bounded organelle	amigo.geneontol...
GO GO:0043232	View Gene Set	2.883e-09	2690	1.204e-06	31	intracellular non-membrane-bounded organelle	amigo.geneontol...
GO GO:0034622	View Gene Set	4.823e-09	393	1.952e-06	33	cellular macromolecular complex assembly	amigo.geneontol...
GO GO:0034621	View Gene Set	1.97e-08	458	7.742e-06	34	cellular macromolecular complex subunit organization	amigo.geneontol...
GO GO:0044238	View Gene Set	2.378e-08	7629	9.076e-06	35	primary metabolic process	amigo.geneontol...
GO GO:0022618	View Gene Set	2.45e-08	76	9.091e-06	36	ribonucleoprotein complex assembly	amigo.geneontol...
GO GO:0016607	View Gene Set	2.543e-08	116	9.183e-06	37	nuclear speck	amigo.geneontol...
GO GO:0034645	View Gene Set	2.669e-08	3529	9.385e-06	38	cellular macromolecule biosynthetic process	amigo.geneontol...
GO GO:0009059	View Gene Set	2.979e-08	3597	1.02e-05	39	macromolecule biosynthetic process	amigo.geneontol...
GO GO:0022613	View Gene Set	5.219e-08	194	1.743e-05	40	ribonucleoprotein complex biogenesis	amigo.geneontol...
GO GO:0010556	View Gene Set	5.866e-08	2901	1.911e-05	41	regulation of macromolecule biosynthetic process	amigo.geneontol...
GO GO:0044451	View Gene Set	6.405e-08	600	2.037e-05	42	nucleoplasm part	amigo.geneontol...
GO GO:0016604	View Gene Set	1.423e-07	198	4.421e-05	43	nuclear body	amigo.geneontol...
GO GO:0044237	View Gene Set	1.85e-07	7431	5.616e-05	44	cellular metabolic process	amigo.geneontol...
GO GO:0043227	View Gene Set	1.916e-07	8383	5.689e-05	45	membrane-bounded organelle	amigo.geneontol...
GO GO:0010468	View Gene Set	2.382e-07	2958	6.918e-05	46	regulation of gene expression	amigo.geneontol...
GO GO:0043231	View Gene Set	2.686e-07	8376	7.635e-05	47	intracellular membrane-bounded organelle	amigo.geneontol...
GO GO:0060255	View Gene Set	4.704e-07	3411	0.0001309	48	regulation of macromolecule metabolic process	amigo.geneontol...
GO GO:0031326	View Gene Set	7.014e-07	3048	0.0001912	49	regulation of cellular biosynthetic process	amigo.geneontol...
GO GO:0044422	View Gene Set	7.69e-07	5089	0.0002055	50	organelle part	amigo.geneontol...
GO GO:0005730	View Gene Set	8.038e-07	734	0.0002106	51	nucleolus	amigo.geneontol...
GO GO:0006261	View Gene Set	8.7e-07	74	0.0002235	52	DNA-dependent DNA replication	amigo.geneontol...
GO GO:0009889	View Gene Set	1.103e-06	3070	0.000268	53	regulation of biosynthetic process	amigo.geneontol...
GO GO:0019219	View Gene Set	1.101e-06	3040	0.000268	53	regulation of nucleobase nucleoside nucleotide and nucleic acid metabolic process	amigo.geneontol...
GO GO:0000785	View Gene Set	1.084e-06	213	0.000268	53	chromatin	amigo.geneontol...
GO GO:0043229	View Gene Set	1.392e-06	9346	0.0003321	56	intracellular organelle	amigo.geneontol...
GO GO:0006259	View Gene Set	1.428e-06	592	0.0003347	57	DNA metabolic process	amigo.geneontol...
GO GO:0043226	View Gene Set	1.516e-06	9360	0.0003491	58	organelle	amigo.geneontol...
GO GO:0006333	View Gene Set	1.563e-06	129	0.0003539	59	chromatin assembly or disassembly	amigo.geneontol...
GO GO:0044446	View Gene Set	1.806e-06	5019	0.0004021	60	intracellular organelle part	amigo.geneontol...
GO GO:0051171	View Gene Set	2.123e-06	3066	0.000465	61	regulation of nitrogen compound metabolic process	amigo.geneontol...
GO GO:0006350	View Gene Set	2.435e-06	2744	0.0005248	62	transcription	amigo.geneontol...
GO GO:0044085	View Gene Set	2.54e-06	1167	0.0005387	63	cellular component biogenesis	amigo.geneontol...
GO GO:0045449	View Gene Set	2.832e-06	2647	0.0005771	64	regulation of transcription	amigo.geneontol...
GO GO:0030532	View Gene Set	2.851e-06	32	0.0005771	64	small nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0005198	View Gene Set	2.781e-06	606	0.0005771	64	structural molecule activity	amigo.geneontol...
GO GO:0080090	View Gene Set	3.626e-06	3585	0.000723	67	regulation of primary metabolic process	amigo.geneontol...
GO GO:0044249	View Gene Set	5.343e-06	4326	0.001042	68	cellular biosynthetic process	amigo.geneontol...
GO GO:0071103	View Gene Set	5.384e-06	140	0.001042	68	DNA conformation change	amigo.geneontol...
GO GO:0051028	View Gene Set	7.929e-06	90	0.001513	70	mRNA transport	amigo.geneontol...
GO GO:0030528	View Gene Set	1.019e-05	950	0.001917	71	transcription regulator activity	amigo.geneontol...
GO GO:0008152	View Gene Set	1.242e-05	8439	0.002305	72	metabolic process	amigo.geneontol...
GO GO:0033554	View Gene Set	1.283e-05	698	0.002348	73	cellular response to stress	amigo.geneontol...
GO GO:0044424	View Gene Set	1.431e-05	10976	0.002584	74	intracellular part	amigo.geneontol...
GO GO:0000245	View Gene Set	2.202e-05	34	0.00387	75	spliceosome assembly	amigo.geneontol...
GO GO:0065003	View Gene Set	2.187e-05	763	0.00387	75	macromolecular complex assembly	amigo.geneontol...
GO GO:0006270	View Gene Set	2.554e-05	26	0.004432	77	DNA-dependent DNA replication initiation	amigo.geneontol...
GO GO:0019222	View Gene Set	2.62e-05	4060	0.004487	78	regulation of metabolic process	amigo.geneontol...
GO GO:0050657	View Gene Set	2.723e-05	102	0.004491	79	nucleic acid transport	amigo.geneontol...
GO GO:0050658	View Gene Set	2.723e-05	102	0.004491	79	RNA transport	amigo.geneontol...
GO GO:0051236	View Gene Set	2.723e-05	102	0.004491	79	establishment of RNA localization	amigo.geneontol...
GO GO:0030530	View Gene Set	2.867e-05	17	0.004671	82	heterogeneous nuclear ribonucleoprotein complex	amigo.geneontol...
GO GO:0006412	View Gene Set	3.092e-05	412	0.004977	83	translation	amigo.geneontol...
GO GO:0000228	View Gene Set	3.202e-05	177	0.005093	84	nuclear chromosome	amigo.geneontol...
GO GO:0009058	View Gene Set	3.403e-05	4436	0.005348	85	biosynthetic process	amigo.geneontol...
GO GO:0006403	View Gene Set	3.623e-05	104	0.005629	86	RNA localization	amigo.geneontol...
GO GO:0022607	View Gene Set	3.685e-05	1043	0.005659	87	cellular component assembly	amigo.geneontol...
GO GO:0031323	View Gene Set	3.744e-05	3768	0.005684	88	regulation of cellular metabolic process	amigo.geneontol...
GO GO:0006289	View Gene Set	4.36e-05	57	0.006545	89	nucleotide-excision repair	amigo.geneontol...
GO GO:0051276	View Gene Set	4.752e-05	548	0.007055	90	chromosome organization	amigo.geneontol...
GO GO:0000786	View Gene Set	4.971e-05	65	0.007298	91	nucleosome	amigo.geneontol...
GO GO:0006281	View Gene Set	5.374e-05	309	0.007804	92	DNA repair	amigo.geneontol...
GO GO:0034399	View Gene Set	7.242e-05	71	0.0104	93	nuclear periphery	amigo.geneontol...
GO GO:0044454	View Gene Set	7.483e-05	139	0.01064	94	nuclear chromosome part	amigo.geneontol...
GO GO:0006974	View Gene Set	7.781e-05	412	0.01094	95	response to DNA damage stimulus	amigo.geneontol...
GO GO:0006260	View Gene Set	8.51e-05	239	0.01172	96	DNA replication	amigo.geneontol...
GO GO:0003697	View Gene Set	8.477e-05	58	0.01172	96	single-stranded DNA binding	amigo.geneontol...
GO GO:0032993	View Gene Set	9.13e-05	99	0.01245	98	protein-DNA complex	amigo.geneontol...
GO GO:0043933	View Gene Set	0.0001003	836	0.01354	99	macromolecular complex subunit organization	amigo.geneontol...
GO GO:0015931	View Gene Set	0.0001085	118	0.01449	100	nucleobase nucleoside nucleotide and nucleic acid transport	amigo.geneontol...
GO GO:0005622	View Gene Set	0.0001238	11329	0.01622	101	intracellular	amigo.geneontol...
GO GO:0043234	View Gene Set	0.0001227	2680	0.01622	101	protein complex	amigo.geneontol...
GO GO:0003729	View Gene Set	0.0001284	71	0.01665	103	mRNA binding	amigo.geneontol...
GO GO:0006334	View Gene Set	0.0001469	83	0.01869	104	nucleosome assembly	amigo.geneontol...
GO GO:0065004	View Gene Set	0.0001463	99	0.01869	104	protein-DNA complex assembly	amigo.geneontol...
GO GO:0031497	View Gene Set	0.0001544	87	0.01946	106	chromatin assembly	amigo.geneontol...
GO GO:0000387	View Gene Set	0.00018	31	0.02248	107	spliceosomal snRNP assembly	amigo.geneontol...
GO GO:0032392	View Gene Set	0.0002034	19	0.02493	108	DNA geometric change	amigo.geneontol...
GO GO:0032508	View Gene Set	0.0002034	19	0.02493	108	DNA duplex unwinding	amigo.geneontol...
GO GO:0005515	View Gene Set	0.0002197	8146	0.02668	110	protein binding	amigo.geneontol...
GO GO:0005657	View Gene Set	0.0002327	34	0.02801	111	replication fork	amigo.geneontol...
GO GO:0051252	View Gene Set	0.0002383	1869	0.02817	112	regulation of RNA metabolic process	amigo.geneontol...
GO GO:0003682	View Gene Set	0.0002367	178	0.02817	112	chromatin binding	amigo.geneontol...
GO GO:0005488	View Gene Set	0.0002565	12334	0.03006	114	binding	amigo.geneontol...
GO GO:0003700	View Gene Set	0.0002755	964	0.03201	115	sequence-specific DNA binding transcription factor activity	amigo.geneontol...
GO GO:0003678	View Gene Set	0.0003421	44	0.03941	116	DNA helicase activity	amigo.geneontol...
GO GO:0006996	View Gene Set	0.0003473	1501	0.03961	117	organelle organization	amigo.geneontol...
GO GO:0034728	View Gene Set	0.0003498	93	0.03961	117	nucleosome organization	amigo.geneontol...
GO GO:0016563	View Gene Set	0.0003647	430	0.04094	119	transcription activator activity	amigo.geneontol...
GO GO:0016363	View Gene Set	0.0003952	64	0.044	120	nuclear matrix	amigo.geneontol...
GO GO:0006323	View Gene Set	0.0004207	119	0.04646	121	DNA packaging	amigo.geneontol...
GO GO:0006268	View Gene Set	0.0004304	12	0.04713	122	DNA unwinding involved in replication	amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad chr19p13	View Gene Set	9.258e-10	514	3.018e-07	1	Genes in cytogenetic band chr19p13	www.broad.mit.e...
Broad chr19q13	View Gene Set	3.349e-07	765	5.46e-05	2	Genes in cytogenetic band chr19q13	www.broad.mit.e...
Broad chr6p22	View Gene Set	2e-06	137	0.0002174	3	Genes in cytogenetic band chr6p22	www.broad.mit.e...
Broad chr1q21	View Gene Set	0.0001483	306	0.01208	4	Genes in cytogenetic band chr1q21	www.broad.mit.e...
Broad chr17p13	View Gene Set	0.0004217	225	0.02291	5	Genes in cytogenetic band chr17p13	www.broad.mit.e...
Broad chr16p11	View Gene Set	0.0003588	148	0.02291	5	Genes in cytogenetic band chr16p11	www.broad.mit.e...
Broad chr6p21	View Gene Set	0.0007162	479	0.03336	7	Genes in cytogenetic band chr6p21	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad ENK_UV_RESPONSE_KERATINOCYTE_UP	View Gene Set	1.159e-12	517	2.772e-09	1	Genes up-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation.	www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP	View Gene Set	7.272e-12	711	8.698e-09	2	Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples.	www.broad.mit.e...
Broad MUELLER_PLURINET	View Gene Set	1.659e-10	294	1.323e-07	3	Genes constituting the PluriNet protein-protein network shared by the pluripotent cells (embryonic stem cells embryonical carcinomas and induced pluripotent cells).	www.broad.mit.e...
Broad HSIAO_HOUSEKEEPING_GENES	View Gene Set	5.79e-10	384	3.462e-07	4	Housekeeping genes identified as expressed across 19 normal tissues.	www.broad.mit.e...
Broad GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	View Gene Set	4.086e-09	308	1.955e-06	5	Genes down-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [Gene ID=7764] locus only.	www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS	View Gene Set	8.179e-07	855	0.0003261	6	Genes up-regulated in HeLa cells (cervical cancer) after simultaneus knockdown of all three MBD (methyl-CpG binding domain) proteins MeCP2 MBD1 and MBD2 [Gene ID=4204 4152 8932] by RNAi.	www.broad.mit.e...
Broad CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	View Gene Set	2.147e-06	639	0.0007335	7	Genes down-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [Gene ID=5371 5914] compared to normal promyeloblasts.	www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	View Gene Set	5.878e-06	681	0.001173	8	Genes up-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue.	www.broad.mit.e...
Broad GRADE_COLON_AND_RECTAL_CANCER_UP	View Gene Set	5.884e-06	213	0.001173	8	Up-regulated genes in both rectal and colon carcinoma compared to normal mucosa samples.	www.broad.mit.e...
Broad FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN	View Gene Set	4.431e-06	43	0.001173	8	Genes down-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen raloxifene or ICI 182780 but not by estradiol [PubChem=44959 5035 3478439 5757].	www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP	View Gene Set	4.862e-06	577	0.001173	8	Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1).	www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_UP	View Gene Set	4.967e-06	1641	0.001173	8	Genes up-regulated in brain from patients with Alzheimer's disease.	www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP	View Gene Set	6.693e-06	301	0.001232	13	Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation.	www.broad.mit.e...
Broad MISSIAGLIA_REGULATED_BY_METHYLATION_DN	View Gene Set	2.78e-05	96	0.00475	14	Genes down-regulated in PaCa44 and CFPAC1 cells (pancreatic cancer) after treatment with decitabine [PubChem=451668] a DNA hypomethylating agent similar to azacitidine [PubChem=9444].	www.broad.mit.e...
Broad ZHANG_RESPONSE_TO_CANTHARIDIN_DN	View Gene Set	3.463e-05	60	0.005522	15	Genes down-regulated in HL-60 cells (promyeloid leukemia) by cantharidin [PubChem=6708701].	www.broad.mit.e...
Broad GARY_CD5_TARGETS_UP	View Gene Set	4.845e-05	463	0.006991	16	Genes up-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector.	www.broad.mit.e...
Broad LI_LUNG_CANCER	View Gene Set	6.138e-05	41	0.006991	16	Proteins showing significant overexpression in lung cancer cell lines relative to normal bronchial epithelial cell lines.	www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP	View Gene Set	5.679e-05	317	0.006991	16	Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector.	www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK	View Gene Set	5.329e-05	1582	0.006991	16	Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues.	www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C	View Gene Set	5.227e-05	436	0.006991	16	Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs.	www.broad.mit.e...
Broad HUPER_BREAST_BASAL_VS_LUMINAL_DN	View Gene Set	6.082e-05	59	0.006991	16	Genes down-regulated in basal mammary epithelial cells compared to the luminal ones.	www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_DN	View Gene Set	7.043e-05	124	0.007658	22	Upregulated by induction of exogenous BRCA1 in EcR-293 cells	www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE	View Gene Set	0.0001109	331	0.01153	23	The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module.	www.broad.mit.e...
Broad SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP	View Gene Set	0.000145	469	0.01445	24	Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.	www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_AUGMENTED_BY_MYC	View Gene Set	0.0001744	101	0.01605	25	Cluster 2: genes up-regulated in B493-6 cells (B lymphocytes) by serum alone or in combination with MYC [Gene ID=4609] but not by MYC alone.	www.broad.mit.e...
Broad LIN_APC_TARGETS	View Gene Set	0.0001733	52	0.01605	25	Genes up-regulated by forced expression of APC [Gene ID=324] in the APC-deficient SW480 cell line (colon cancer).	www.broad.mit.e...
Broad FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_DN	View Gene Set	0.0002564	76	0.02271	27	Top 100 genes positively (UP) and negatively (DN) associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [Gene ID=4297 4298].	www.broad.mit.e...
Broad MATSUDA_NATURAL_KILLER_DIFFERENTIATION	View Gene Set	0.0002925	430	0.02499	28	Genes changed between developmental stages of Valpha14i natural killer T lymphocyte cells (NKT).	www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK	View Gene Set	0.0003604	744	0.02973	29	Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200].	www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_UP	View Gene Set	0.0003818	131	0.03044	30	Cluster 1: genes up-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not by affected by MYC [Gene ID=4609].	www.broad.mit.e...
Broad HOFMANN_MYELODYSPLASTIC_SYNDROM_LOW_RISK_DN	View Gene Set	0.0004509	25	0.03479	31	Genes down-regulated in bone marrow hematopoietic stem cells (HSC CD34+ [Gene ID=947]) from patients with low risk of myelodysplastic syndrome (MDS) compared with healthy controls.	www.broad.mit.e...
Broad MANALO_HYPOXIA_DN	View Gene Set	0.0006169	276	0.04612	32	Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091].	www.broad.mit.e...
Broad LEE_METASTASIS_AND_RNA_PROCESSING_UP	View Gene Set	0.0006574	15	0.04765	33	Components of RNA post-transcriptional modification machinery up-regulated in MDA-MB-435 cells (breast cancer) whose metastatic potential has been reduced by expression of NME1 [Gene ID=4830].	www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS	View Gene Set	3.044e-10	140	5.662e-08	1	Systemic lupus erythematosus	www.broad.mit.e...
Broad KEGG_SPLICEOSOME	View Gene Set	1.237e-08	118	1.151e-06	2	Spliceosome	www.broad.mit.e...
Broad KEGG_DNA_REPLICATION	View Gene Set	0.0001884	36	0.008766	3	DNA replication	www.broad.mit.e...
Broad KEGG_HOMOLOGOUS_RECOMBINATION	View Gene Set	0.0001885	28	0.008766	3	Homologous recombination	www.broad.mit.e...
Broad KEGG_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.0002547	44	0.009476	5	Nucleotide excision repair	www.broad.mit.e...
Broad KEGG_FOCAL_ADHESION	View Gene Set	0.001036	201	0.0321	6	Focal adhesion	www.broad.mit.e...
Broad KEGG_ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC	View Gene Set	0.001364	76	0.03625	7	Arrhythmogenic right ventricular cardiomyopathy (ARVC)	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS	View Gene Set	2.075e-12	124	8.922e-10	1	Genes involved in Elongation and Processing of Capped Transcripts	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING	View Gene Set	6.999e-12	97	1.003e-09	2	Genes involved in mRNA Splicing	www.broad.mit.e...
Broad REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA	View Gene Set	4.902e-12	128	1.003e-09	2	Genes involved in Processing of Capped Intron-Containing Pre-mRNA	www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION	View Gene Set	1.783e-10	415	1.917e-08	4	Genes involved in Gene Expression	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_OPENING	View Gene Set	3.687e-10	59	3.171e-08	5	Genes involved in RNA Polymerase I Promoter Opening	www.broad.mit.e...
Broad REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT	View Gene Set	6.504e-09	142	4.661e-07	6	Genes involved in Formation and Maturation of mRNA Transcript	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_CLEARANCE	View Gene Set	3.956e-08	82	2.43e-06	7	Genes involved in RNA PolymerasePromoter Clearance	www.broad.mit.e...
Broad REACTOME_TELOMERE_MAINTENANCE	View Gene Set	3.945e-07	77	2.121e-05	8	Genes involved in Telomere Maintenance	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION	View Gene Set	5.279e-06	188	0.0002522	9	Genes involved in Transcription	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION	View Gene Set	9.653e-06	120	0.0004151	10	Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription	www.broad.mit.e...
Broad REACTOME_PACKAGING_OF_TELOMERE_ENDS	View Gene Set	2.045e-05	49	0.0007996	11	Genes involved in Packaging Of Telomere Ends	www.broad.mit.e...
Broad REACTOME_NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	2.935e-05	49	0.001052	12	Genes involved in Nucleotide Excision Repair	www.broad.mit.e...
Broad REACTOME_MRNA_SPLICING_MINOR_PATHWAY	View Gene Set	3.8e-05	38	0.001257	13	Genes involved in mRNA Splicing - Minor Pathway	www.broad.mit.e...
Broad REACTOME_DNA_REPAIR	View Gene Set	5.359e-05	102	0.001559	14	Genes involved in DNA Repair	www.broad.mit.e...
Broad REACTOME_GLOBAL_GENOMIC_NER	View Gene Set	5.439e-05	33	0.001559	14	Genes involved in Global Genomic NER (GG-NER)	www.broad.mit.e...
Broad REACTOME_MITOTIC_M_M_G1_PHASES	View Gene Set	0.0001375	157	0.003695	16	Genes involved in Mitotic M-M/G1 phases	www.broad.mit.e...
Broad REACTOME_METABOLISM_OF_RNA	View Gene Set	0.0001516	95	0.003835	17	Genes involved in Metabolism of RNA	www.broad.mit.e...
Broad REACTOME_CELL_CYCLE_MITOTIC	View Gene Set	0.0003111	306	0.007433	18	Genes involved in Cell Cycle Mitotic	www.broad.mit.e...
Broad REACTOME_SNRNP_ASSEMBLY	View Gene Set	0.0004536	50	0.009805	19	Genes involved in snRNP Assembly	www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION_COUPLED_NER	View Gene Set	0.000456	44	0.009805	19	Genes involved in Transcription-coupled NER (TC-NER)	www.broad.mit.e...
Broad REACTOME_TRANSLATION	View Gene Set	0.001024	120	0.02097	21	Genes involved in Translation	www.broad.mit.e...
Broad REACTOME_MRNA_3_END_PROCESSING	View Gene Set	0.001697	25	0.03317	22	Genes involved in mRNA 3-end processing	www.broad.mit.e...
Broad REACTOME_EARLY_PHASE_OF_HIV_LIFE_CYCLE	View Gene Set	0.001826	13	0.03353	23	Genes involved in Early Phase of HIV Life Cycle	www.broad.mit.e...
Broad REACTOME_S_PHASE	View Gene Set	0.001871	103	0.03353	23	Genes involved in S Phase	www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION	View Gene Set	0.002198	34	0.0378	25	Genes involved in RNA PolymeraseChain Elongation	www.broad.mit.e...
Broad REACTOME_DNA_STRAND_ELONGATION	View Gene Set	0.002522	31	0.04171	26	Genes involved in DNA strand elongation	www.broad.mit.e...
Broad REACTOME_EXTENSION_OF_TELOMERES	View Gene Set	0.002976	28	0.0474	27	Genes involved in Extension of Telomeres	www.broad.mit.e...
Broad REACTOME_DUAL_INCISION_REACTION_IN_GG_NER	View Gene Set	0.003131	20	0.04808	28	Genes involved in Dual incision reaction in GG-NER	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad KRCTCNNNNMANAGC_UNKNOWN	View Gene Set	3.18e-09	60	1.956e-06	1	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif KRCTCNNNNMANAGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad GGGCGGR_V$SP1_Q6	View Gene Set	1.788e-06	2120	0.0005497	2	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor	www.broad.mit.e...
Broad RCGCANGCGY_V$NRF1_Q6	View Gene Set	3.553e-05	580	0.007284	3	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RCGCANGCGY which matches annotation for NRF1: nuclear respiratory factor 1	www.broad.mit.e...
Broad V$AREB6_01	View Gene Set	0.0001251	198	0.0118	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNYNYACCTGWVT which matches annotation for TCF8: transcription factor 8 (represses interleukin 2 expression)	www.broad.mit.e...
Broad V$SMAD_Q6	View Gene Set	9.754e-05	189	0.0118	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif AGACNBCNN which matches annotation for SMAD1: SMAD mothers against DPP homolog 1 (Drosophila)	www.broad.mit.e...
Broad SCGGAAGY_V$ELK1_02	View Gene Set	0.0001343	784	0.0118	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif SCGGAAGY which matches annotation for ELK1: ELK1 member of ETS oncogene family	www.broad.mit.e...
Broad GGGTGGRR_V$PAX4_03	View Gene Set	0.0001135	994	0.0118	4	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGTGGRR which matches annotation for PAX4: paired box gene 4	www.broad.mit.e...
Broad V$AP2ALPHA_01	View Gene Set	0.0002044	176	0.01397	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCNNNRGS which matches annotation for TFAP2A: transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	www.broad.mit.e...
Broad V$E2F_03	View Gene Set	0.0001824	171	0.01397	8	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGCGMNR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$COUP_01	View Gene Set	0.0003796	188	0.02335	10	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TGAMCTTTGMMCYT which matches annotation for HNF4A: hepatocyte nuclear factor 4 alpha	www.broad.mit.e...
Broad V$CETS1P54_01	View Gene Set	0.0006094	183	0.02883	11	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCMGGAWGYN which matches annotation for ETS1: v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	www.broad.mit.e...
Broad V$NFKAPPAB_01	View Gene Set	0.0005643	191	0.02883	11	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGAMTTYCC which matches annotation for NFKB<br> RELA: v-rel reticuloendotheliosis viral oncogene homolog A nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 p65 (avian)	www.broad.mit.e...
Broad V$PTF1BETA_Q6	View Gene Set	0.0005351	179	0.02883	11	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GRGAAAMBBWCAGS which matches annotation for PTF1A: pancreas specific transcription factor 1a	www.broad.mit.e...
Broad V$CMYB_01	View Gene Set	0.0008554	179	0.03095	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NCNRNNGRCNGTTGGKGG which matches annotation for MYB: v-myb myeloblastosis viral oncogene homolog (avian)	www.broad.mit.e...
Broad V$GATA2_01	View Gene Set	0.0008021	84	0.03095	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NNNGATRNNN which matches annotation for GATA2: GATA binding protein 2	www.broad.mit.e...
Broad V$NFKB_C	View Gene Set	0.0008362	209	0.03095	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NGGGACTTTCCA. Motif does not match any known transcription factor	www.broad.mit.e...
Broad TCCCRNNRTGC_UNKNOWN	View Gene Set	0.000749	130	0.03095	14	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TCCCRNNRTGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad TTTNNANAGCYR_UNKNOWN	View Gene Set	0.0009425	118	0.0322	18	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTNNANAGCYR. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$AP2GAMMA_01	View Gene Set	0.001096	177	0.03548	19	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GCCYNNGGS which matches annotation for TFAP2C: transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	www.broad.mit.e...
Broad V$NFKB_Q6	View Gene Set	0.001189	197	0.03655	20	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif NGGGGAMTTTCCNN. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$EGR1_01	View Gene Set	0.001248	193	0.03656	21	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif WTGCGTGGGCGK which matches annotation for EGR1: early growth response 1	www.broad.mit.e...
Broad V$HIF1_Q5	View Gene Set	0.001411	176	0.0366	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif CGTACGTGCNGB which matches annotation for HIF1A: hypoxia-inducible factor 1 alpha subunit (basic helix-loop-helix transcription factor)	www.broad.mit.e...
Broad V$E2F4DP1_01	View Gene Set	0.001428	174	0.0366	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F4: E2F transcription factor 4 p107/p130-binding<br> TFDP1: transcription factor Dp-1	www.broad.mit.e...
Broad V$E2F1DP1RB_01	View Gene Set	0.001394	168	0.0366	22	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif TTTSGCGC which matches annotation for E2F1: E2F transcription factor 1<br> TFDP1: transcription factor Dp-1<br> RB1: retinoblastoma 1 (including osteosarcoma)	www.broad.mit.e...
Broad V$E2F_02	View Gene Set	0.001548	169	0.03809	25	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif TTTSGCGC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$ATF_01	View Gene Set	0.001786	202	0.04225	26	Genes with promoter regions [-2kb 2kb] around transcription start site containing motif CNSTGACGTNNNYC. Motif does not match any known transcription factor	www.broad.mit.e...
Broad V$E2F1_Q4	View Gene Set	0.002172	178	0.04607	27	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTSGCGG which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad V$E2F1_Q6_01	View Gene Set	0.002029	177	0.04607	27	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif NTTTCGCGCS which matches annotation for E2F1: E2F transcription factor 1	www.broad.mit.e...
Broad RYTTCCTG_V$ETS2_B	View Gene Set	0.002137	809	0.04607	27	Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif RYTTCCTG which matches annotation for ETS2: v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)	www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad MORF_EIF3S2	View Gene Set	5.237e-14	220	2.236e-11	1	Neighborhood of EIF3S2	www.broad.mit.e...
Broad MORF_UBE2I	View Gene Set	1.087e-13	208	2.322e-11	2	Neighborhood of UBE2I	www.broad.mit.e...
Broad MORF_BUB3	View Gene Set	3.011e-13	256	3.798e-11	3	Neighborhood of BUB3	www.broad.mit.e...
Broad MORF_RAD23A	View Gene Set	3.557e-13	316	3.798e-11	3	Neighborhood of RAD23A	www.broad.mit.e...
Broad MORF_ACP1	View Gene Set	3.497e-11	178	2.986e-09	5	Neighborhood of ACP1	www.broad.mit.e...
Broad GCM_CSNK2B	View Gene Set	6.256e-11	88	4.452e-09	6	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_AP2M1	View Gene Set	1.065e-09	197	6.498e-08	7	Neighborhood of AP2M1	www.broad.mit.e...
Broad MORF_ANP32B	View Gene Set	2.437e-09	174	1.301e-07	8	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_FBL	View Gene Set	2.91e-09	121	1.381e-07	9	Neighborhood of FBL	www.broad.mit.e...
Broad MORF_CSNK2B	View Gene Set	2.088e-08	256	8.914e-07	10	Neighborhood of CSNK2B	www.broad.mit.e...
Broad MORF_PRKDC	View Gene Set	2.337e-07	173	9.072e-06	11	Neighborhood of PRKDC	www.broad.mit.e...
Broad MORF_MAP2K2	View Gene Set	4.898e-07	123	1.743e-05	12	Neighborhood of MAP2K2	www.broad.mit.e...
Broad MORF_GNB1	View Gene Set	7.32e-07	276	2.233e-05	13	Neighborhood of GNB1	www.broad.mit.e...
Broad GCM_PFN1	View Gene Set	6.894e-07	47	2.233e-05	13	Neighborhood of PFN1	www.broad.mit.e...
Broad MORF_CCNI	View Gene Set	1.534e-06	76	4.305e-05	15	Neighborhood of CCNI	www.broad.mit.e...
Broad MORF_AATF	View Gene Set	1.613e-06	179	4.305e-05	15	Neighborhood of AATF	www.broad.mit.e...
Broad MORF_DEK	View Gene Set	1.873e-06	229	4.704e-05	17	Neighborhood of DEK	www.broad.mit.e...
Broad MORF_EIF4A2	View Gene Set	2.976e-06	120	6.596e-05	18	Neighborhood of EIF4A2	www.broad.mit.e...
Broad MORF_NPM1	View Gene Set	2.802e-06	152	6.596e-05	18	Neighborhood of NPM1	www.broad.mit.e...
Broad GCM_APEX1	View Gene Set	3.215e-06	102	6.596e-05	18	Neighborhood of APEX1	www.broad.mit.e...
Broad GCM_NPM1	View Gene Set	3.244e-06	108	6.596e-05	18	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_G22P1	View Gene Set	3.429e-06	145	6.598e-05	22	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_SART1	View Gene Set	3.554e-06	55	6.598e-05	22	Neighborhood of SART1	www.broad.mit.e...
Broad GCM_ACTG1	View Gene Set	3.937e-06	113	7.005e-05	24	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_XRCC5	View Gene Set	7.976e-06	210	0.0001362	25	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_PHB	View Gene Set	8.58e-06	112	0.0001409	26	Neighborhood of PHB	www.broad.mit.e...
Broad MORF_HDAC1	View Gene Set	9.36e-06	222	0.000148	27	Neighborhood of HDAC1	www.broad.mit.e...
Broad MORF_ESPL1	View Gene Set	1.068e-05	58	0.0001629	28	Neighborhood of ESPL1	www.broad.mit.e...
Broad MORF_SOD1	View Gene Set	1.285e-05	247	0.0001854	29	Neighborhood of SOD1	www.broad.mit.e...
Broad MORF_RAN	View Gene Set	1.302e-05	242	0.0001854	29	Neighborhood of RAN	www.broad.mit.e...
Broad MORF_DDB1	View Gene Set	1.382e-05	220	0.0001904	31	Neighborhood of DDB1	www.broad.mit.e...
Broad GNF2_MCM5	View Gene Set	1.615e-05	51	0.0002155	32	Neighborhood of MCM5	www.broad.mit.e...
Broad MORF_RFC4	View Gene Set	2.272e-05	137	0.0002939	33	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_FANCG	View Gene Set	3.305e-05	148	0.0004151	34	Neighborhood of FANCG	www.broad.mit.e...
Broad MORF_GSPT1	View Gene Set	3.545e-05	41	0.0004244	35	Neighborhood of GSPT1	www.broad.mit.e...
Broad MORF_PRKAG1	View Gene Set	3.578e-05	202	0.0004244	35	Neighborhood of PRKAG1	www.broad.mit.e...
Broad MORF_EIF3S6	View Gene Set	3.68e-05	108	0.0004246	37	Neighborhood of EIF3S6	www.broad.mit.e...
Broad MORF_RPA2	View Gene Set	3.869e-05	170	0.0004348	38	Neighborhood of RPA2	www.broad.mit.e...
Broad MORF_NME2	View Gene Set	4.225e-05	145	0.0004625	39	Neighborhood of NME2	www.broad.mit.e...
Broad MORF_EI24	View Gene Set	4.842e-05	136	0.0005169	40	Neighborhood of EI24	www.broad.mit.e...
Broad MORF_RRM1	View Gene Set	5.655e-05	90	0.0005749	41	Neighborhood of RRM1	www.broad.mit.e...
Broad GCM_RAF1	View Gene Set	5.654e-05	34	0.0005749	41	Neighborhood of RAF1	www.broad.mit.e...
Broad MORF_FEN1	View Gene Set	6.932e-05	58	0.0006884	43	Neighborhood of FEN1	www.broad.mit.e...
Broad GNF2_APEX1	View Gene Set	7.095e-05	72	0.0006885	44	Neighborhood of APEX1	www.broad.mit.e...
Broad MORF_FDXR	View Gene Set	7.674e-05	205	0.0007124	45	Neighborhood of FDXR	www.broad.mit.e...
Broad GNF2_DEK	View Gene Set	7.625e-05	45	0.0007124	45	Neighborhood of DEK	www.broad.mit.e...
Broad GNF2_MLH1	View Gene Set	8.568e-05	36	0.0007784	47	Neighborhood of MLH1	www.broad.mit.e...
Broad MORF_SNRP70	View Gene Set	9.693e-05	50	0.0008623	48	Neighborhood of SNRP70	www.broad.mit.e...
Broad MORF_HDAC2	View Gene Set	0.0001158	256	0.0009983	49	Neighborhood of HDAC2	www.broad.mit.e...
Broad MORF_IKBKG	View Gene Set	0.0001169	119	0.0009983	49	Neighborhood of IKBKG	www.broad.mit.e...
Broad MORF_USP5	View Gene Set	0.0001439	46	0.001205	51	Neighborhood of USP5	www.broad.mit.e...
Broad MORF_DAP3	View Gene Set	0.000147	175	0.001207	52	Neighborhood of DAP3	www.broad.mit.e...
Broad GNF2_KPNB1	View Gene Set	0.0001896	52	0.001527	53	Neighborhood of KPNB1	www.broad.mit.e...
Broad MORF_ACTG1	View Gene Set	0.0001944	134	0.001536	54	Neighborhood of ACTG1	www.broad.mit.e...
Broad MORF_PPP1CC	View Gene Set	0.0001978	150	0.001536	54	Neighborhood of PPP1CC	www.broad.mit.e...
Broad MORF_DNMT1	View Gene Set	0.0002023	105	0.001542	56	Neighborhood of DNMT1	www.broad.mit.e...
Broad MORF_DDX11	View Gene Set	0.0002519	138	0.001887	57	Neighborhood of DDX11	www.broad.mit.e...
Broad GNF2_NPM1	View Gene Set	0.0002806	57	0.002066	58	Neighborhood of NPM1	www.broad.mit.e...
Broad MORF_TERF1	View Gene Set	0.0002954	57	0.002115	59	Neighborhood of TERF1	www.broad.mit.e...
Broad GNF2_BUB3	View Gene Set	0.0002999	22	0.002115	59	Neighborhood of BUB3	www.broad.mit.e...
Broad GNF2_XRCC5	View Gene Set	0.0003022	61	0.002115	59	Neighborhood of XRCC5	www.broad.mit.e...
Broad MORF_GPX4	View Gene Set	0.0003122	49	0.00215	62	Neighborhood of GPX4	www.broad.mit.e...
Broad MORF_GMPS	View Gene Set	0.0003208	48	0.002175	63	Neighborhood of GMPS	www.broad.mit.e...
Broad GNF2_SMC4L1	View Gene Set	0.0003479	75	0.002321	64	Neighborhood of SMC4L1	www.broad.mit.e...
Broad MORF_TERF2IP	View Gene Set	0.0003622	99	0.002379	65	Neighborhood of TERF2IP	www.broad.mit.e...
Broad MORF_TPR	View Gene Set	0.0003823	131	0.002473	66	Neighborhood of TPR	www.broad.mit.e...
Broad MORF_PCNA	View Gene Set	0.0004963	71	0.003117	67	Neighborhood of PCNA	www.broad.mit.e...
Broad GNF2_G22P1	View Gene Set	0.0004958	29	0.003117	67	Neighborhood of G22P1	www.broad.mit.e...
Broad MORF_MT4	View Gene Set	0.0005187	218	0.00317	69	Neighborhood of MT4	www.broad.mit.e...
Broad MORF_MTA1	View Gene Set	0.0005196	95	0.00317	69	Neighborhood of MTA1	www.broad.mit.e...
Broad MORF_PTPN11	View Gene Set	0.0005436	93	0.003224	71	Neighborhood of PTPN11	www.broad.mit.e...
Broad GNF2_PCNA	View Gene Set	0.0005394	62	0.003224	71	Neighborhood of PCNA	www.broad.mit.e...
Broad MORF_HAT1	View Gene Set	0.0005957	155	0.003485	73	Neighborhood of HAT1	www.broad.mit.e...
Broad MORF_CTBP1	View Gene Set	0.0006115	149	0.003529	74	Neighborhood of CTBP1	www.broad.mit.e...
Broad MORF_RAD54L	View Gene Set	0.0006841	94	0.003813	75	Neighborhood of RAD54L	www.broad.mit.e...
Broad GNF2_HAT1	View Gene Set	0.0006876	45	0.003813	75	Neighborhood of HAT1	www.broad.mit.e...
Broad GNF2_HDAC1	View Gene Set	0.0006793	85	0.003813	75	Neighborhood of HDAC1	www.broad.mit.e...
Broad GCM_TPT1	View Gene Set	0.0006998	69	0.003831	78	Neighborhood of TPT1	www.broad.mit.e...
Broad MORF_CDC10	View Gene Set	0.0008343	120	0.00451	79	Neighborhood of CDC10	www.broad.mit.e...
Broad MORF_RBBP8	View Gene Set	0.0008573	190	0.004576	80	Neighborhood of RBBP8	www.broad.mit.e...
Broad GNF2_UBE2I	View Gene Set	0.0008815	33	0.004647	81	Neighborhood of UBE2I	www.broad.mit.e...
Broad GNF2_RRM1	View Gene Set	0.001001	82	0.00521	82	Neighborhood of RRM1	www.broad.mit.e...
Broad MORF_TPT1	View Gene Set	0.001054	100	0.005424	83	Neighborhood of TPT1	www.broad.mit.e...
Broad GNF2_MSH2	View Gene Set	0.001102	26	0.005603	84	Neighborhood of MSH2	www.broad.mit.e...
Broad MORF_CUL1	View Gene Set	0.001197	62	0.006013	85	Neighborhood of CUL1	www.broad.mit.e...
Broad GNF2_PA2G4	View Gene Set	0.001461	73	0.007256	86	Neighborhood of PA2G4	www.broad.mit.e...
Broad GNF2_CENPF	View Gene Set	0.001544	56	0.007576	87	Neighborhood of CENPF	www.broad.mit.e...
Broad GNF2_TDG	View Gene Set	0.00209	23	0.01014	88	Neighborhood of TDG	www.broad.mit.e...
Broad MORF_CDK2	View Gene Set	0.002345	63	0.01125	89	Neighborhood of CDK2	www.broad.mit.e...
Broad MORF_AP3D1	View Gene Set	0.002719	119	0.0129	90	Neighborhood of AP3D1	www.broad.mit.e...
Broad GNF2_ELAC2	View Gene Set	0.002784	32	0.01306	91	Neighborhood of ELAC2	www.broad.mit.e...
Broad MORF_RAF1	View Gene Set	0.002927	94	0.01344	92	Neighborhood of RAF1	www.broad.mit.e...
Broad GCM_BECN1	View Gene Set	0.002898	59	0.01344	92	Neighborhood of BECN1	www.broad.mit.e...
Broad MORF_CSNK1D	View Gene Set	0.002999	65	0.01362	94	Neighborhood of CSNK1D	www.broad.mit.e...
Broad GNF2_CCNA2	View Gene Set	0.00342	62	0.01537	95	Neighborhood of CCNA2	www.broad.mit.e...
Broad GCM_PSME1	View Gene Set	0.003706	76	0.01637	96	Neighborhood of PSME1	www.broad.mit.e...
Broad GNF2_RBBP6	View Gene Set	0.003719	54	0.01637	96	Neighborhood of RBBP6	www.broad.mit.e...
Broad GNF2_RRM2	View Gene Set	0.003989	36	0.01738	98	Neighborhood of RRM2	www.broad.mit.e...
Broad MORF_DEAF1	View Gene Set	0.004415	54	0.01896	99	Neighborhood of DEAF1	www.broad.mit.e...
Broad MORF_HEAB	View Gene Set	0.004441	71	0.01896	99	Neighborhood of HEAB	www.broad.mit.e...
Broad GNF2_ANP32B	View Gene Set	0.004486	29	0.01897	101	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_PPP2CA	View Gene Set	0.004656	110	0.01949	102	Neighborhood of PPP2CA	www.broad.mit.e...
Broad MORF_JAK3	View Gene Set	0.005516	86	0.02259	103	Neighborhood of JAK3	www.broad.mit.e...
Broad GNF2_EIF3S6	View Gene Set	0.005555	109	0.02259	103	Neighborhood of EIF3S6	www.broad.mit.e...
Broad GNF2_MKI67	View Gene Set	0.005537	26	0.02259	103	Neighborhood of MKI67	www.broad.mit.e...
Broad MORF_ERCC2	View Gene Set	0.005902	91	0.02333	106	Neighborhood of ERCC2	www.broad.mit.e...
Broad MORF_TNFRSF25	View Gene Set	0.005853	242	0.02333	106	Neighborhood of TNFRSF25	www.broad.mit.e...
Broad GNF2_RFC4	View Gene Set	0.00588	57	0.02333	106	Neighborhood of RFC4	www.broad.mit.e...
Broad MORF_PPP1CA	View Gene Set	0.006468	145	0.02534	109	Neighborhood of PPP1CA	www.broad.mit.e...
Broad MORF_PML	View Gene Set	0.006882	129	0.02671	110	Neighborhood of PML	www.broad.mit.e...
Broad MORF_UNG	View Gene Set	0.007115	65	0.02737	111	Neighborhood of UNG	www.broad.mit.e...
Broad MORF_RAB1A	View Gene Set	0.007436	179	0.02835	112	Neighborhood of RAB1A	www.broad.mit.e...
Broad GCM_DDX11	View Gene Set	0.007844	38	0.02964	113	Neighborhood of DDX11	www.broad.mit.e...
Broad MORF_ARAF1	View Gene Set	0.008549	70	0.03202	114	Neighborhood of ARAF1	www.broad.mit.e...
Broad MORF_CDC2L5	View Gene Set	0.00869	127	0.03226	115	Neighborhood of CDC2L5	www.broad.mit.e...
Broad GCM_HDAC1	View Gene Set	0.009393	30	0.03428	116	Neighborhood of HDAC1	www.broad.mit.e...
Broad GCM_ANP32B	View Gene Set	0.009331	32	0.03428	116	Neighborhood of ANP32B	www.broad.mit.e...
Broad MORF_BECN1	View Gene Set	0.009596	93	0.03473	118	Neighborhood of BECN1	www.broad.mit.e...
Broad MORF_JUND	View Gene Set	0.009793	63	0.03509	119	Neighborhood of JUND	www.broad.mit.e...
Broad MORF_UBE2N	View Gene Set	0.009862	79	0.03509	119	Neighborhood of UBE2N	www.broad.mit.e...
Broad MORF_PPP5C	View Gene Set	0.01039	81	0.03667	121	Neighborhood of PPP5C	www.broad.mit.e...
Broad GCM_PPP1CC	View Gene Set	0.01184	47	0.04144	122	Neighborhood of PPP1CC	www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad module_32	View Gene Set	1.081e-10	227	4.906e-08	1	Genes in module_32	www.broad.mit.e...
Broad module_183	View Gene Set	3.689e-06	52	0.0008375	2	Genes in module_183	www.broad.mit.e...
Broad module_98	View Gene Set	1.701e-05	375	0.002575	3	Genes in module_98	www.broad.mit.e...
Broad module_159	View Gene Set	2.798e-05	81	0.003176	4	Genes in module_159	www.broad.mit.e...
Broad module_115	View Gene Set	4.001e-05	27	0.003633	5	Genes in module_115	www.broad.mit.e...
Broad module_3	View Gene Set	6.031e-05	374	0.003633	6	Genes in module_3	www.broad.mit.e...
Broad module_6	View Gene Set	6.402e-05	403	0.003633	6	Genes in module_6	www.broad.mit.e...
Broad module_198	View Gene Set	5.865e-05	288	0.003633	6	Genes in module_198	www.broad.mit.e...
Broad module_83	View Gene Set	0.0003014	296	0.01368	9	Genes in module_83	www.broad.mit.e...
Broad module_350	View Gene Set	0.0002973	57	0.01368	9	Genes in module_350	www.broad.mit.e...
Broad module_60	View Gene Set	0.0003783	403	0.01562	11	Genes in module_60	www.broad.mit.e...
Broad module_17	View Gene Set	0.0005212	351	0.0182	12	Genes in module_17	www.broad.mit.e...
Broad module_257	View Gene Set	0.0005046	137	0.0182	12	Genes in module_257	www.broad.mit.e...
Broad module_81	View Gene Set	0.0005781	20	0.01865	14	Genes in module_81	www.broad.mit.e...
Broad module_244	View Gene Set	0.0006161	182	0.01865	14	Genes in module_244	www.broad.mit.e...
Broad module_388	View Gene Set	0.0007142	17	0.01907	16	Genes in module_388	www.broad.mit.e...
Broad module_485	View Gene Set	0.0006862	44	0.01907	16	Genes in module_485	www.broad.mit.e...
Broad module_105	View Gene Set	0.000902	192	0.02275	18	Genes in module_105	www.broad.mit.e...
Broad module_222	View Gene Set	0.0009613	22	0.02297	19	Genes in module_222	www.broad.mit.e...
Broad module_110	View Gene Set	0.001021	15	0.02317	20	Genes in module_110	www.broad.mit.e...
Broad module_114	View Gene Set	0.001172	314	0.02534	21	Genes in module_114	www.broad.mit.e...
Broad module_168	View Gene Set	0.001375	22	0.02838	22	Genes in module_168	www.broad.mit.e...
Broad module_160	View Gene Set	0.001814	15	0.03431	23	Genes in module_160	www.broad.mit.e...
Broad module_392	View Gene Set	0.001802	18	0.03431	23	Genes in module_392	www.broad.mit.e...
Broad module_174	View Gene Set	0.00216	92	0.03771	25	Genes in module_174	www.broad.mit.e...
Broad module_241	View Gene Set	0.002156	71	0.03771	25	Genes in module_241	www.broad.mit.e...
Broad module_68	View Gene Set	0.002441	26	0.04061	27	Genes in module_68	www.broad.mit.e...
Broad module_421	View Gene Set	0.002505	23	0.04061	27	Genes in module_421	www.broad.mit.e...
Broad module_151	View Gene Set	0.002608	297	0.04084	29	Genes in module_151	www.broad.mit.e...
Broad module_438	View Gene Set	0.002803	66	0.04242	30	Genes in module_438	www.broad.mit.e...
Broad module_149	View Gene Set	0.002999	36	0.04391	31	Genes in module_149	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	3.827e-10	1197	1.579e-07	1	Genes annotated by the GO term GO:0006139. The chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad RNA_PROCESSING	View Gene Set	3.564e-10	147	1.579e-07	1	Genes annotated by the GO term GO:0006396. Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	www.broad.mit.e...
Broad RNA_METABOLIC_PROCESS	View Gene Set	2.001e-07	801	4.126e-05	3	Genes annotated by the GO term GO:0016070. The chemical reactions and pathways involving RNA ribonucleic acid one of the two main type of nucleic acid consisting of a long unbranched macromolecule formed from ribonucleotides joined in 3' 5'-phosphodiester linkage.	www.broad.mit.e...
Broad RNA_SPLICING	View Gene Set	1.587e-07	73	4.126e-05	3	Genes annotated by the GO term GO:0008380. The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.	www.broad.mit.e...
Broad MRNA_METABOLIC_PROCESS	View Gene Set	4.886e-07	70	8.063e-05	5	Genes annotated by the GO term GO:0016071. The chemical reactions and pathways involving mRNA messenger RNA which is responsible for carrying the coded genetic 'message' transcribed from DNA to sites of protein assembly at the ribosomes.	www.broad.mit.e...
Broad BIOPOLYMER_METABOLIC_PROCESS	View Gene Set	1.477e-06	1623	0.0002031	6	Genes annotated by the GO term GO:0043283. The chemical reactions and pathways involving biopolymers long repeating chains of monomers found in nature e.g. polysaccharides and proteins.	www.broad.mit.e...
Broad MRNA_PROCESSING_GO_0006397	View Gene Set	2.865e-06	59	0.0003377	7	Genes annotated by the GO term GO:0006397. Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS_AND_ASSEMBLY	View Gene Set	1.774e-05	74	0.00183	8	Genes annotated by the GO term GO:0022613. The cellular process by which a complex containing RNA and proteins is synthesized aggregates and bonds together.	www.broad.mit.e...
Broad PROTEIN_RNA_COMPLEX_ASSEMBLY	View Gene Set	2.313e-05	59	0.00212	9	Genes annotated by the GO term GO:0022618. The aggregation arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.	www.broad.mit.e...
Broad NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS	View Gene Set	2.668e-05	27	0.002201	10	Genes annotated by the GO term GO:0051129. Any process that stops prevents or reduces the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.	www.broad.mit.e...
Broad DNA_METABOLIC_PROCESS	View Gene Set	3.852e-05	253	0.002889	11	Genes annotated by the GO term GO:0006259. The chemical reactions and pathways involving DNA deoxyribonucleic acid one of the two main types of nucleic acid consisting of a long unbranched macromolecule formed from one or more commonly two strands of linked deoxyribonucleotides.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX_ASSEMBLY	View Gene Set	5.54e-05	271	0.003264	12	Genes annotated by the GO term GO:0065003. The aggregation arrangement and bonding together of a set of macromolecules to form a complex.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION_AND_BIOGENESIS	View Gene Set	5.22e-05	124	0.003264	12	Genes annotated by the GO term GO:0051128. Any process that modulates the frequency rate or extent of the processes involved in the formation arrangement of constituent parts or disassembly of cell structures including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.	www.broad.mit.e...
Broad CELLULAR_COMPONENT_ASSEMBLY	View Gene Set	4.954e-05	288	0.003264	12	Genes annotated by the GO term GO:0022607. A cellular process that results in the assembly of a part of the cell.	www.broad.mit.e...
Broad REGULATION_OF_METABOLIC_PROCESS	View Gene Set	0.0001562	779	0.008592	15	Genes annotated by the GO term GO:0019222. Any process that modulates the frequency rate or extent of the chemical reactions and pathways within a cell or an organism.	www.broad.mit.e...
Broad TRANSLATION	View Gene Set	0.0001916	177	0.009879	16	Genes annotated by the GO term GO:0006412. The chemical reactions and pathways resulting in the formation of a protein. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.	www.broad.mit.e...
Broad CELLULAR_BIOSYNTHETIC_PROCESS	View Gene Set	0.0002298	311	0.01115	17	Genes annotated by the GO term GO:0044249. The chemical reactions and pathways resulting in the formation of substances carried out by individual cells.	www.broad.mit.e...
Broad REGULATION_OF_CELLULAR_METABOLIC_PROCESS	View Gene Set	0.0002527	767	0.01158	18	Genes annotated by the GO term GO:0031323. Any process that modulates the frequency rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.	www.broad.mit.e...
Broad DNA_REPLICATION	View Gene Set	0.0003511	101	0.01525	19	Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.	www.broad.mit.e...
Broad RNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS	View Gene Set	0.0004886	27	0.02015	20	Genes annotated by the GO term GO:0000375. Splicing of RNA via a series of two transesterification reactions.	www.broad.mit.e...
Broad REGULATION_OF_GENE_EXPRESSION	View Gene Set	0.0005647	660	0.02218	21	Genes annotated by the GO term GO:0010468. Any process that modulates the frequency rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.	www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT	View Gene Set	0.0008526	115	0.03197	22	Genes annotated by the GO term GO:0045893. Any process that activates or increases the frequency rate or extent of DNA-dependent transcription.	www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS	View Gene Set	0.0009673	117	0.03325	23	Genes annotated by the GO term GO:0051254. Any process that activates or increases the frequency rate or extent of the chemical reactions and pathways involving RNA.	www.broad.mit.e...
Broad NUCLEOTIDE_EXCISION_REPAIR	View Gene Set	0.0009558	20	0.03325	23	Genes annotated by the GO term GO:0006289. In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).	www.broad.mit.e...
Broad ORGANELLE_ORGANIZATION_AND_BIOGENESIS	View Gene Set	0.001077	458	0.03416	25	Genes annotated by the GO term GO:0006996. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of any organelle within a cell.	www.broad.mit.e...
Broad REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS	View Gene Set	0.001053	601	0.03416	25	Genes annotated by the GO term GO:0019219. Any process that modulates the frequency rate or extent of the chemical reactions and pathways involving nucleobases nucleosides nucleotides and nucleic acids.	www.broad.mit.e...
Broad POSITIVE_REGULATION_OF_TRANSCRIPTION	View Gene Set	0.001244	139	0.03802	27	Genes annotated by the GO term GO:0045941. Any process that activates or increases the frequency rate or extent of transcription.	www.broad.mit.e...
Broad PROTEIN_COMPLEX_ASSEMBLY	View Gene Set	0.001574	167	0.04636	28	Genes annotated by the GO term GO:0006461. The aggregation arrangement and bonding together of a set of components to form a protein complex.	www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad NUCLEUS	View Gene Set	2.482e-13	1353	5.784e-11	1	Genes annotated by the GO term GO:0005634. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells the nucleus contains all of the cell's chromosomes except the organellar chromosomes and is the site of RNA synthesis and processing. In some species or in specialized cell types RNA metabolism or DNA replication may be absent.	www.broad.mit.e...
Broad NUCLEAR_PART	View Gene Set	1.327e-09	543	1.546e-07	2	Genes annotated by the GO term GO:0044428. Any constituent part of the nucleus a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	www.broad.mit.e...
Broad ORGANELLE_PART	View Gene Set	2.486e-09	1149	1.779e-07	3	Genes annotated by the GO term GO:0044422. Any constituent part of an organelle an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad INTRACELLULAR_ORGANELLE_PART	View Gene Set	3.055e-09	1144	1.779e-07	3	Genes annotated by the GO term GO:0044446. A constituent part of an intracellular organelle an organized structure of distinctive morphology and function occurring within the cell. Includes constituent parts of the nucleus mitochondria plastids vacuoles vesicles ribosomes and the cytoskeleton but excludes the plasma membrane.	www.broad.mit.e...
Broad NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	7.238e-08	613	2.811e-06	5	Genes annotated by the GO term GO:0043228. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE	View Gene Set	7.238e-08	613	2.811e-06	5	Genes annotated by the GO term GO:0043232. Organized structure of distinctive morphology and function not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes the cytoskeleton and chromosomes.	www.broad.mit.e...
Broad RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	2.852e-07	129	9.492e-06	7	Genes annotated by the GO term GO:0030529. A macromolecular complex containing both protein and RNA molecules.	www.broad.mit.e...
Broad SPLICEOSOME	View Gene Set	7.948e-07	44	2.315e-05	8	Genes annotated by the GO term GO:0005681. A ribonucleoprotein complex containing RNA and small nuclear ribonucleoproteins (snRNPs) that is assembled during the splicing of messenger RNA primary transcript to excise an intron.	www.broad.mit.e...
Broad MACROMOLECULAR_COMPLEX	View Gene Set	1.05e-06	914	2.718e-05	9	Genes annotated by the GO term GO:0032991. A stable assembly of two or more macromolecules i.e. proteins nucleic acids carbohydrates or lipids in which the constituent parts function together.	www.broad.mit.e...
Broad CYTOSKELETON	View Gene Set	1.59e-05	359	0.0003705	10	Genes annotated by the GO term GO:0005856. Any of the various filamentous elements that form the internal framework of cells and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments microfilaments microtubules the microtrabecular lattice and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions including cellular movement cell division endocytosis and movement of organelles.	www.broad.mit.e...
Broad CYTOSKELETAL_PART	View Gene Set	2.673e-05	231	0.0005663	11	Genes annotated by the GO term GO:0044430. Any constituent part of the cytoskeleton a cellular scaffolding or skeleton that maintains cell shape enables some cell motion (using structures such as flagella and cilia) and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments microfilaments microtubules and the microtrabecular lattice.	www.broad.mit.e...
Broad HETEROGENEOUS_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	6.188e-05	9	0.001202	12	Genes annotated by the GO term GO:0030530. Particulate complex of heterogeneous nuclear RNA (hnRNA; a heterogeneous mixture of RNA molecules of high Mr with a rapid turnover rate that occurs in cell nuclei during protein synthesis; it is the form of RNA synthesized in eukaryotes by RNA polymerase II that which is translated into protein) with protein which is cell-specific and heterogeneous. The protein component may play a role in the processing of the hnRNA to mRNA.	www.broad.mit.e...
Broad REPLICATION_FORK	View Gene Set	0.0001807	18	0.003239	13	Genes annotated by the GO term GO:0005657. The Y-shaped region of a replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad ORGANELLE_LUMEN	View Gene Set	0.0002427	434	0.00377	14	Genes annotated by the GO term GO:0043233. The volume enclosed by the membranes of a particular organelle e.g. endoplasmic reticulum lumen or the space between the two lipid bilayers of a double membrane surrounding an organelle e.g. nuclear membrane lumen.	www.broad.mit.e...
Broad MEMBRANE_ENCLOSED_LUMEN	View Gene Set	0.0002427	434	0.00377	14	Genes annotated by the GO term GO:0031974. The enclosed volume within a sealed membrane or between two sealed membranes.	www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASE_COMPLEX	View Gene Set	0.0003044	16	0.00394	16	Genes annotated by the GO term GO:0000428. A protein complex that possesses DNA-directed RNA polymerase activity.	www.broad.mit.e...
Broad RNA_POLYMERASE_COMPLEX	View Gene Set	0.0003044	16	0.00394	16	Genes annotated by the GO term GO:0030880. Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits.	www.broad.mit.e...
Broad NUCLEAR_DNA_DIRECTED_RNA_POLYMERASE_COMPLEX	View Gene Set	0.0003044	16	0.00394	16	Genes annotated by the GO term GO:0055029. A protein complex located in the nucleus that possesses DNA-directed RNA polymerase activity.	www.broad.mit.e...
Broad NUCLEAR_LUMEN	View Gene Set	0.0004009	365	0.004916	19	Genes annotated by the GO term GO:0031981. The volume enclosed by the nuclear inner membrane.	www.broad.mit.e...
Broad SMALL_NUCLEAR_RIBONUCLEOPROTEIN_COMPLEX	View Gene Set	0.0004644	20	0.00541	20	Genes annotated by the GO term GO:0030532. A complex composed of RNA of the small nuclear RNA (snRNA) class and protein found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain e.g. U1 snRNP or U4/U6 snRNP. Many but not all of these complexes are involved in splicing of nuclear mRNAs.	www.broad.mit.e...
Broad NUCLEAR_REPLICATION_FORK	View Gene Set	0.0007676	10	0.008517	21	Genes annotated by the GO term GO:0043596. The Y-shaped region of a nuclear replicating DNA molecule resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	www.broad.mit.e...
Broad MYOSIN_COMPLEX	View Gene Set	0.001135	16	0.01202	22	Genes annotated by the GO term GO:0016459. A protein complex formed of one or more myosin heavy chains plus associated light chains and other proteins that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor or head domain but also have distinct tail regions that are believed to bind specific cargoes.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME	View Gene Set	0.00136	53	0.0132	23	Genes annotated by the GO term GO:0000228. A chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad CONTRACTILE_FIBER_PART	View Gene Set	0.001306	23	0.0132	23	Genes annotated by the GO term GO:0044449. Any constituent part of a contractile fiber a fiber composed of actin myosin and associated proteins found in cells of smooth or striated muscle.	www.broad.mit.e...
Broad PROTEIN_COMPLEX	View Gene Set	0.001486	799	0.01385	25	Genes annotated by the GO term GO:0043234. Any protein group composed of two or more subunits which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups such as nucleic acids metal ions or carbohydrate groups.	www.broad.mit.e...
Broad DNA_DIRECTED_RNA_POLYMERASEII_CORE_COMPLEX	View Gene Set	0.002029	11	0.01818	26	Genes annotated by the GO term GO:0005665. RNA polymerase II one of three nuclear DNA-directed RNA polymerases found in all eukaryotes is a multisubunit complex; typically it produces mRNAs snoRNAs and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more) some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis it requires additional factors to select the appropriate template.	www.broad.mit.e...
Broad NUCLEAR_CHROMOSOME_PART	View Gene Set	0.003212	33	0.02772	27	Genes annotated by the GO term GO:0044454. Any constituent part of a nuclear chromosome a chromosome found in the nucleus of a eukaryotic cell.	www.broad.mit.e...
Broad CONTRACTILE_FIBER	View Gene Set	0.003351	25	0.02788	28	Genes annotated by the GO term GO:0043292. Fibers composed of actin myosin and associated proteins found in cells of smooth or striated muscle.	www.broad.mit.e...
Broad CHROMOSOME	View Gene Set	0.003678	122	0.02955	29	Genes annotated by the GO term GO:0005694. A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.	www.broad.mit.e...
Broad CONDENSED_CHROMOSOME	View Gene Set	0.003986	32	0.03096	30	Genes annotated by the GO term GO:0000793. A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.	www.broad.mit.e...
Broad NUCLEOLUS	View Gene Set	0.004751	116	0.03571	31	Genes annotated by the GO term GO:0005730. A small dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein is not bounded by a limiting membrane and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA the processing of this RNA into 5.8S 18S and 28S components of ribosomal RNA and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.	www.broad.mit.e...
Broad MYOFIBRIL	View Gene Set	0.005189	19	0.03778	32	Genes annotated by the GO term GO:0030016. The contractile element of skeletal and cardiac muscle; a long highly organized bundle of actin myosin and other proteins that contracts by a sliding filament mechanism.	www.broad.mit.e...
Broad CORNIFIED_ENVELOPE	View Gene Set	0.006959	13	0.04913	33	Genes annotated by the GO term GO:0001533. An insoluble protein structure formed under the plasma membrane of cornifying epithelial cells.	www.broad.mit.e...

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Broad RNA_BINDING	View Gene Set	3.326e-09	236	1.317e-06	1	Genes annotated by the GO term GO:0003723. Interacting selectively with an RNA molecule or a portion thereof.	www.broad.mit.e...
Broad STRUCTURAL_MOLECULE_ACTIVITY	View Gene Set	3.02e-07	243	5.98e-05	2	Genes annotated by the GO term GO:0005198. The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.	www.broad.mit.e...
Broad STRUCTURE_SPECIFIC_DNA_BINDING	View Gene Set	5.126e-06	55	0.0006766	3	Genes annotated by the GO term GO:0043566. Interacting selectively with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding.	www.broad.mit.e...
Broad DOUBLE_STRANDED_DNA_BINDING	View Gene Set	3.332e-05	32	0.003299	4	Genes annotated by the GO term GO:0003690. Interacting selectively with double-stranded DNA.	www.broad.mit.e...
Broad MRNA_BINDING	View Gene Set	9.136e-05	22	0.007236	5	Genes annotated by the GO term GO:0003729. Interacting selectively with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA).	www.broad.mit.e...
Broad SINGLE_STRANDED_DNA_BINDING	View Gene Set	0.0001578	34	0.00935	6	Genes annotated by the GO term GO:0003697. Interacting selectively with single-stranded DNA.	www.broad.mit.e...
Broad STRUCTURAL_CONSTITUENT_OF_CYTOSKELETON	View Gene Set	0.0001653	57	0.00935	6	Genes annotated by the GO term GO:0005200. The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.	www.broad.mit.e...
Broad RNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM	View Gene Set	0.0002811	14	0.01391	8	Genes annotated by the GO term GO:0031202. An activity which binds RNA and functions to assist splicing of substrate RNA(s) by facilitating the formation and stabilization of a catalytic conformation in which the splice junctions of the RNA(s) to be spliced are positioned for a transesterification reaction that occurs between two sites within the RNA(s) to be spliced.	www.broad.mit.e...
Broad STEROID_HORMONE_RECEPTOR_BINDING	View Gene Set	0.0006551	10	0.02882	9	Genes annotated by the GO term GO:0035258. Interacting selectively with a steroid hormone receptor.	www.broad.mit.e...
Broad ATP_DEPENDENT_HELICASE_ACTIVITY	View Gene Set	0.001139	26	0.04508	10	Genes annotated by the GO term GO:0008026. Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix.	www.broad.mit.e...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
PMID 15635413	View Gene Set	4.314e-20	421	1.081e-16	1	Nucleolar proteome dynamics.	www.ncbi.nlm.ni...
PMID 12226669	View Gene Set	3.063e-13	108	3.839e-10	2	Comprehensive proteomic analysis of the human spliceosome.	www.ncbi.nlm.ni...
PMID 15302935	View Gene Set	3.85e-11	773	3.217e-08	3	Large-scale characterization of HeLa cell nuclear phosphoproteins.	www.ncbi.nlm.ni...
PMID 14657027	View Gene Set	8.678e-11	74	5.439e-08	4	Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter.	www.ncbi.nlm.ni...
PMID 16964243	View Gene Set	1.503e-10	504	7.534e-08	5	A probability-based approach for high-throughput protein phosphorylation analysis and site localization.	www.ncbi.nlm.ni...
PMID 16565220	View Gene Set	1.976e-10	210	8.257e-08	6	Phosphoproteome analysis of the human mitotic spindle.	www.ncbi.nlm.ni...
PMID 15592455	View Gene Set	2.56e-10	317	9.169e-08	7	Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.	www.ncbi.nlm.ni...
PMID 11689053	View Gene Set	1.325e-09	70	3.689e-07	8	Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA.	www.ncbi.nlm.ni...
PMID 9566873	View Gene Set	1.184e-09	74	3.689e-07	8	Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter.	www.ncbi.nlm.ni...
PMID 16916647	View Gene Set	3.7e-09	76	9.276e-07	10	Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.	www.ncbi.nlm.ni...
PMID 17643375	View Gene Set	5.35e-09	391	1.219e-06	11	Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.	www.ncbi.nlm.ni...
PMID 12408966	View Gene Set	8.744e-09	76	1.827e-06	12	The human and mouse replication-dependent histone genes.	www.ncbi.nlm.ni...
PMID 11790298	View Gene Set	2.72e-08	208	5.245e-06	13	Directed proteomic analysis of the human nucleolus.	www.ncbi.nlm.ni...
PMID 11080476	View Gene Set	3.953e-08	87	7.079e-06	14	Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones.	www.ncbi.nlm.ni...
PMID 9439656	View Gene Set	8.5e-08	55	1.421e-05	15	The human histone gene cluster at the D6S105 locus.	www.ncbi.nlm.ni...
PMID 11991638	View Gene Set	1.583e-07	74	2.481e-05	16	Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.	www.ncbi.nlm.ni...
PMID 14559993	View Gene Set	2.306e-07	51	3.401e-05	17	Regulation of alternative splicing by SRrp86 and its interacting proteins.	www.ncbi.nlm.ni...
PMID 15057824	View Gene Set	3.544e-07	274	4.936e-05	18	The DNA sequence and biology of human chromosome 19.	www.ncbi.nlm.ni...
PMID 20085707	View Gene Set	2.335e-06	42	0.0003081	19	Aire's partners in the molecular control of immunological tolerance.	www.ncbi.nlm.ni...
PMID 15146077	View Gene Set	3.621e-06	32	0.0004539	20	The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome.	www.ncbi.nlm.ni...
PMID 9119399	View Gene Set	4.251e-06	35	0.0005075	21	Human histone gene organization: nonregular arrangement within a large cluster.	www.ncbi.nlm.ni...
PMID 16713563	View Gene Set	4.652e-06	19	0.0005301	22	Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.	www.ncbi.nlm.ni...
PMID 15231747	View Gene Set	5.636e-06	212	0.0006143	23	A protein interaction framework for human mRNA degradation.	www.ncbi.nlm.ni...
PMID 15782174	View Gene Set	7.944e-06	31	0.0008298	24	Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.	www.ncbi.nlm.ni...
PMID 12234937	View Gene Set	9.716e-06	34	0.0009743	25	Characterization of novel SF3b and 17S U2 snRNP proteins including a human Prp5p homologue and an SF3b DEAD-box protein.	www.ncbi.nlm.ni...
PMID 17220478	View Gene Set	1.586e-05	63	0.001529	26	Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells.	www.ncbi.nlm.ni...
PMID 16283522	View Gene Set	1.686e-05	18	0.001566	27	Inhibition of core histones acetylation by carcinogenic nickel(II).	www.ncbi.nlm.ni...
PMID 12429849	View Gene Set	3.28e-05	106	0.002937	28	Functional proteomic analysis of human nucleolus.	www.ncbi.nlm.ni...
PMID 10064132	View Gene Set	3.627e-05	14	0.003135	29	The human H2A and H2B histone gene complement.	www.ncbi.nlm.ni...
PMID 11713266	View Gene Set	3.754e-05	12	0.003137	30	The methylosome a 20S complex containing JBP1 and pICln produces dimethylarginine-modified Sm proteins.	www.ncbi.nlm.ni...
PMID 15324660	View Gene Set	4.143e-05	242	0.00335	31	Proteomic functional and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization.	www.ncbi.nlm.ni...
PMID 12757711	View Gene Set	5.392e-05	18	0.004224	32	Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase.	www.ncbi.nlm.ni...
PMID 16307923	View Gene Set	6.483e-05	23	0.004925	33	Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.	www.ncbi.nlm.ni...
PMID 10725331	View Gene Set	7.367e-05	14	0.005432	34	Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli.	www.ncbi.nlm.ni...
PMID 14671302	View Gene Set	7.707e-05	14	0.00552	35	Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.	www.ncbi.nlm.ni...
PMID 9731529	View Gene Set	8.065e-05	24	0.005617	36	Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.	www.ncbi.nlm.ni...
PMID 19237606	View Gene Set	0.0001095	84	0.007419	37	Genetic polymorphisms in 85 DNA repair genes and bladder cancer risk.	www.ncbi.nlm.ni...
PMID 16627869	View Gene Set	0.0001209	17	0.007974	38	Quantitative proteomic analysis of post-translational modifications of human histones.	www.ncbi.nlm.ni...
PMID 19032382	View Gene Set	0.0001909	11	0.01227	39	Antigen expression of human eccrine sweat glands.	www.ncbi.nlm.ni...
PMID 12962325	View Gene Set	0.0002633	22	0.0165	40	Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing.	www.ncbi.nlm.ni...
PMID 16097034	View Gene Set	0.000292	36	0.01785	41	Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC.	www.ncbi.nlm.ni...
PMID 20150366	View Gene Set	0.0003918	25	0.02339	42	DNA repair gene polymorphisms and risk of adult meningioma glioma and acoustic neuroma.	www.ncbi.nlm.ni...
PMID 14743216	View Gene Set	0.0004215	132	0.02457	43	A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway.	www.ncbi.nlm.ni...
PMID 12045100	View Gene Set	0.0005165	18	0.02943	44	DNA replication in eukaryotic cells.	www.ncbi.nlm.ni...
PMID 11242053	View Gene Set	0.0005774	12	0.03085	45	Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.	www.ncbi.nlm.ni...
PMID 20522537	View Gene Set	0.0005783	73	0.03085	45	Variation within DNA repair pathway genes and risk of multiple sclerosis.	www.ncbi.nlm.ni...
PMID 9472028	View Gene Set	0.0005638	12	0.03085	45	SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.	www.ncbi.nlm.ni...
PMID 16319397	View Gene Set	0.0006117	20	0.03195	48	Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry.	www.ncbi.nlm.ni...
PMID 11714716	View Gene Set	0.0006464	13	0.03241	49	Gemin5 a novel WD repeat protein component of the SMN complex that binds Sm proteins.	www.ncbi.nlm.ni...
PMID 17289661	View Gene Set	0.0006394	35	0.03241	49	Molecular composition of IMP1 ribonucleoprotein granules.	www.ncbi.nlm.ni...
PMID 14667819	View Gene Set	0.0007032	112	0.0339	51	Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region.	www.ncbi.nlm.ni...
PMID 17685459	View Gene Set	0.000699	11	0.0339	51	Polymorphism in nucleotide excision repair gene XPC correlates with bleomycin-induced chromosomal aberrations.	www.ncbi.nlm.ni...
PMID 20061190	View Gene Set	0.000789	10	0.03732	53	ERCC1 haplotypes modify bladder cancer risk: a case-control study.	www.ncbi.nlm.ni...
PMID 11101529	View Gene Set	0.0009085	34	0.04141	54	Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry.	www.ncbi.nlm.ni...
PMID 19851445	View Gene Set	0.0008933	176	0.04141	54	High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.	www.ncbi.nlm.ni...
PMID 10436018	View Gene Set	0.0009647	15	0.04173	56	The Cdc6 nucleotide-binding site regulates its activity in DNA replication in human cells.	www.ncbi.nlm.ni...
PMID 11500380	View Gene Set	0.0009435	10	0.04173	56	A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.	www.ncbi.nlm.ni...
PMID 15231748	View Gene Set	0.0009764	519	0.04173	56	Functional proteomics mapping of a human signaling pathway.	www.ncbi.nlm.ni...
PMID 15952740	View Gene Set	0.000982	58	0.04173	56	Protein profiling of human pancreatic islets by two-dimensional gel electrophoresis and mass spectrometry.	www.ncbi.nlm.ni...
PMID 18391950	View Gene Set	0.001151	24	0.04807	60	Identification of ten loci associated with height highlights new biological pathways in human growth.	www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null chr19_0-5Mb	View Gene Set	4.661e-08	105	5.192e-05	1	Genomic tile: chr19 ; 1-5000001 Mb	genome.ucsc.edu...
Null chr12_47.5-52.5Mb	View Gene Set	3.994e-05	84	0.01483	2	Genomic tile: chr12 ; 47500001-52500001 Mb	genome.ucsc.edu...
Null chr19_52.5-57.5Mb	View Gene Set	3.321e-05	114	0.01483	2	Genomic tile: chr19 ; 52500001-57500001 Mb	genome.ucsc.edu...
Null chr16_27.5-32.5Mb	View Gene Set	6.875e-05	76	0.01915	4	Genomic tile: chr16 ; 27500001-32500001 Mb	genome.ucsc.edu...
Null chr19_42.5-47.5Mb	View Gene Set	0.0001043	95	0.02324	5	Genomic tile: chr19 ; 42500001-47500001 Mb	genome.ucsc.edu...
Null chr16_30-35Mb	View Gene Set	0.0002604	46	0.04836	6	Genomic tile: chr16 ; 30000001-35000001 Mb	genome.ucsc.edu...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null PS50102	View Gene Set	8.698e-10	229	6.393e-07	1	RRM	expasy.org/pros...
Null PS00357	View Gene Set	5.826e-07	19	0.0002141	2	HISTONE_H2B	expasy.org/pros...
Null PS00322	View Gene Set	6.632e-05	19	0.01625	3	HISTONE_H3_1	expasy.org/pros...
Null PS00959	View Gene Set	0.0001445	21	0.02655	4	HISTONE_H3_2	expasy.org/pros...
Null PS51234	View Gene Set	0.0002904	5	0.03557	5	TSP3	expasy.org/pros...
Null PS51236	View Gene Set	0.0002904	5	0.03557	5	TSP_CTER	expasy.org/pros...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	8.285e-11	236	1.903e-07	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	1.977e-09	147	2.271e-06	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	1.038e-08	64	7.951e-06	3	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	4.182e-07	101	0.0002402	4	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	1.488e-06	35	0.0006837	5	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.RNU12-2P	View Gene Set	5.011e-06	18	0.001644	6	Protein-protein-interaction for RNU12-2P	www.ncbi.nlm.ni...
Null ppi.RNU11	View Gene Set	5.011e-06	18	0.001644	6	Protein-protein-interaction for RNU11	www.ncbi.nlm.ni...
Null ppi.PUF60	View Gene Set	7.062e-06	31	0.002028	8	Protein-protein-interaction for PUF60	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	2.886e-05	15	0.007365	9	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	3.839e-05	50	0.008819	10	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.SMNDC1	View Gene Set	5.408e-05	8	0.01129	11	Protein-protein-interaction for SMNDC1	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	6.367e-05	28	0.01219	12	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	0.0001092	38	0.01792	13	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	0.0001024	71	0.01792	13	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	0.0001261	46	0.01932	15	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.SSRP1	View Gene Set	0.0001363	15	0.01957	16	Protein-protein-interaction for SSRP1	www.ncbi.nlm.ni...
Null ppi.ZBTB8A	View Gene Set	0.0001733	18	0.02341	17	Protein-protein-interaction for ZBTB8A	www.ncbi.nlm.ni...
Null ppi.PSME1	View Gene Set	0.0003489	5	0.04408	18	Protein-protein-interaction for PSME1	www.ncbi.nlm.ni...
Null ppi.ZYX	View Gene Set	0.0003646	6	0.04408	18	Protein-protein-interaction for ZYX	www.ncbi.nlm.ni...
Null ppi.USP49	View Gene Set	0.0004077	24	0.04682	20	Protein-protein-interaction for USP49	www.ncbi.nlm.ni...
Null ppi.SF3B2	View Gene Set	0.0004965	11	0.04959	21	Protein-protein-interaction for SF3B2	www.ncbi.nlm.ni...
Null ppi.PKP2	View Gene Set	0.000467	11	0.04959	21	Protein-protein-interaction for PKP2	www.ncbi.nlm.ni...
Null ppi.POU2F2	View Gene Set	0.0004785	10	0.04959	21	Protein-protein-interaction for POU2F2	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.SFRS12	View Gene Set	5.556e-07	49	0.001319	1	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.ZBTB8B	View Gene Set	3.935e-05	18	0.04671	2	Protein-protein-interaction for ZBTB8B	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null ppi.155871	View Gene Set	4.314e-10	251	1.55e-06	1	Protein-protein-interaction for 155871	www.ncbi.nlm.ni...
Null ppi.MEPCE	View Gene Set	1.977e-09	147	3.553e-06	2	Protein-protein-interaction for MEPCE	www.ncbi.nlm.ni...
Null ppi.SRRM1	View Gene Set	2.554e-08	66	3.059e-05	3	Protein-protein-interaction for SRRM1	www.ncbi.nlm.ni...
Null ppi.SRRM2	View Gene Set	4.182e-07	101	0.0003758	4	Protein-protein-interaction for SRRM2	www.ncbi.nlm.ni...
Null ppi.SFRS12	View Gene Set	5.501e-07	50	0.0003954	5	Protein-protein-interaction for SFRS12	www.ncbi.nlm.ni...
Null ppi.WBP4	View Gene Set	1.488e-06	35	0.0008914	6	Protein-protein-interaction for WBP4	www.ncbi.nlm.ni...
Null ppi.PUF60	View Gene Set	2.474e-06	35	0.00127	7	Protein-protein-interaction for PUF60	www.ncbi.nlm.ni...
Null ppi.SMNDC1	View Gene Set	5.073e-06	10	0.00169	8	Protein-protein-interaction for SMNDC1	www.ncbi.nlm.ni...
Null ppi.RNU12-2P	View Gene Set	5.011e-06	18	0.00169	8	Protein-protein-interaction for RNU12-2P	www.ncbi.nlm.ni...
Null ppi.RNU11	View Gene Set	5.011e-06	18	0.00169	8	Protein-protein-interaction for RNU11	www.ncbi.nlm.ni...
Null ppi.HIST1H4A	View Gene Set	5.173e-06	31	0.00169	8	Protein-protein-interaction for HIST1H4A	www.ncbi.nlm.ni...
Null ppi.SUMO2	View Gene Set	9.039e-06	55	0.002707	12	Protein-protein-interaction for SUMO2	www.ncbi.nlm.ni...
Null ppi.KAT2B	View Gene Set	2.226e-05	88	0.006153	13	Protein-protein-interaction for KAT2B	www.ncbi.nlm.ni...
Null ppi.KHDRBS2	View Gene Set	3.657e-05	48	0.009387	14	Protein-protein-interaction for KHDRBS2	www.ncbi.nlm.ni...
Null ppi.ZBTB8B	View Gene Set	3.935e-05	18	0.009428	15	Protein-protein-interaction for ZBTB8B	www.ncbi.nlm.ni...
Null ppi.WDR77	View Gene Set	7.803e-05	18	0.01753	16	Protein-protein-interaction for WDR77	www.ncbi.nlm.ni...
Null ppi.RNPS1	View Gene Set	0.0001792	44	0.03399	17	Protein-protein-interaction for RNPS1	www.ncbi.nlm.ni...
Null ppi.SF3B1	View Gene Set	0.0001797	31	0.03399	17	Protein-protein-interaction for SF3B1	www.ncbi.nlm.ni...
Null ppi.ZBTB8A	View Gene Set	0.0001733	18	0.03399	17	Protein-protein-interaction for ZBTB8A	www.ncbi.nlm.ni...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null TNF alpha/NF-kB	View Gene Set	0.004289	170	0.04289	1	CELL_MAP - TNF alpha/NF-kB gene set	www.pathwaycomm...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null mRNA Splicing - Major Pathway	View Gene Set	1.452e-13	107	5.405e-11	1	REACTOME - mRNA Splicing - Major Pathway gene set	www.pathwaycomm...
Null mRNA Splicing	View Gene Set	1.452e-13	107	5.405e-11	1	REACTOME - mRNA Splicing gene set	www.pathwaycomm...
Null Processing of Capped Intron-Containing Pre-mRNA	View Gene Set	1.22e-13	138	5.405e-11	1	REACTOME - Processing of Capped Intron-Containing Pre-mRNA gene set	www.pathwaycomm...
Null mRNA Processing	View Gene Set	1.079e-12	158	3.014e-10	4	REACTOME - mRNA Processing gene set	www.pathwaycomm...
Null Gene Expression	View Gene Set	1.449e-11	381	3.236e-09	5	REACTOME - Gene Expression gene set	www.pathwaycomm...
Null Formation and Maturation of mRNA Transcript	View Gene Set	1.413e-10	185	2.63e-08	6	REACTOME - Formation and Maturation of mRNA Transcript gene set	www.pathwaycomm...
Null Post-Elongation Processing of the Transcript	View Gene Set	1.944e-06	43	0.0002413	7	REACTOME - Post-Elongation Processing of the Transcript gene set	www.pathwaycomm...
Null Cleavage of Growing Transcript in the Termination Region	View Gene Set	1.944e-06	43	0.0002413	7	REACTOME - Cleavage of Growing Transcript in the Termination Region gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription Termination	View Gene Set	1.944e-06	43	0.0002413	7	REACTOME - RNA Polymerase II Transcription Termination gene set	www.pathwaycomm...
Null mRNA Splicing - Minor Pathway	View Gene Set	2.81e-06	42	0.0003139	10	REACTOME - mRNA Splicing - Minor Pathway gene set	www.pathwaycomm...
Null DNA Repair	View Gene Set	1.035e-05	108	0.001051	11	REACTOME - DNA Repair gene set	www.pathwaycomm...
Null Metabolism of RNA	View Gene Set	1.146e-05	174	0.001067	12	REACTOME - Metabolism of RNA gene set	www.pathwaycomm...
Null RNA Polymerase I Promoter Opening	View Gene Set	1.885e-05	31	0.00162	13	REACTOME - RNA Polymerase I Promoter Opening gene set	www.pathwaycomm...
Null Mitotic M-M/G1 phases	View Gene Set	2.699e-05	180	0.002154	14	REACTOME - Mitotic M-M/G1 phases gene set	www.pathwaycomm...
Null Nucleotide Excision Repair	View Gene Set	2.935e-05	51	0.002185	15	REACTOME - Nucleotide Excision Repair gene set	www.pathwaycomm...
Null DNA Replication	View Gene Set	3.678e-05	200	0.002567	16	REACTOME - DNA Replication gene set	www.pathwaycomm...
Null Global Genomic NER (GG-NER)	View Gene Set	5.439e-05	35	0.003574	17	REACTOME - Global Genomic NER (GG-NER) gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intron-Containing pre-mRNA	View Gene Set	6.672e-05	34	0.003922	18	REACTOME - Post-Elongation Processing of Intron-Containing pre-mRNA gene set	www.pathwaycomm...
Null mRNA 3'-end processing	View Gene Set	6.672e-05	34	0.003922	18	REACTOME - mRNA 3'-end processing gene set	www.pathwaycomm...
Null Transcription	View Gene Set	8.17e-05	178	0.004563	20	REACTOME - Transcription gene set	www.pathwaycomm...
Null Cell Cycle Mitotic	View Gene Set	0.0002009	312	0.01069	21	REACTOME - Cell Cycle Mitotic gene set	www.pathwaycomm... Mitotic&format=...
Null RNA Polymerase I Transcription	View Gene Set	0.0003135	57	0.01592	22	REACTOME - RNA Polymerase I Transcription gene set	www.pathwaycomm...
Null Transport of Mature Transcript to Cytoplasm	View Gene Set	0.0004182	55	0.01959	23	REACTOME - Transport of Mature Transcript to Cytoplasm gene set	www.pathwaycomm...
Null Transcription-coupled NER (TC-NER)	View Gene Set	0.000456	45	0.01959	23	REACTOME - Transcription-coupled NER (TC-NER) gene set	www.pathwaycomm...
Null snRNP Assembly	View Gene Set	0.0004536	50	0.01959	23	REACTOME - snRNP Assembly gene set	www.pathwaycomm...
Null Metabolism of non-coding RNA	View Gene Set	0.0004536	50	0.01959	23	REACTOME - Metabolism of non-coding RNA gene set	www.pathwaycomm...
Null Chromosome Maintenance	View Gene Set	0.0004833	69	0.02	27	REACTOME - Chromosome Maintenance gene set	www.pathwaycomm...
Null Transport of Mature mRNA derived from an Intron-Containing Transcript	View Gene Set	0.0005409	51	0.02083	28	REACTOME - Transport of Mature mRNA derived from an Intron-Containing Transcript gene set	www.pathwaycomm...
Null RNA Polymerase I Promoter Clearance	View Gene Set	0.0005313	55	0.02083	28	REACTOME - RNA Polymerase I Promoter Clearance gene set	www.pathwaycomm...
Null Homologous Recombination Repair	View Gene Set	0.0006409	22	0.02309	30	REACTOME - Homologous Recombination Repair gene set	www.pathwaycomm...
Null Homologous recombination repair of replication-independent double-strand breaks	View Gene Set	0.0006409	22	0.02309	30	REACTOME - Homologous recombination repair of replication-independent double-strand breaks gene set	www.pathwaycomm...
Null RNA Polymerase II Transcription	View Gene Set	0.0006717	101	0.02345	32	REACTOME - RNA Polymerase II Transcription gene set	www.pathwaycomm...
Null RNA Polymerase I Chain Elongation	View Gene Set	0.0008086	49	0.02737	33	REACTOME - RNA Polymerase I Chain Elongation gene set	www.pathwaycomm...
Null Assembly of the pre-replicative complex	View Gene Set	0.0009871	75	0.03243	34	REACTOME - Assembly of the pre-replicative complex gene set	www.pathwaycomm...
Null Translation	View Gene Set	0.001024	120	0.03268	35	REACTOME - Translation gene set	www.pathwaycomm...
Null Double-Strand Break Repair	View Gene Set	0.001085	27	0.03367	36	REACTOME - Double-Strand Break Repair gene set	www.pathwaycomm...
Null Early Phase of HIV Life Cycle	View Gene Set	0.001262	11	0.03811	37	REACTOME - Early Phase of HIV Life Cycle gene set	www.pathwaycomm...
Null S Phase	View Gene Set	0.001423	113	0.04184	38	REACTOME - S Phase gene set	www.pathwaycomm...
Null Post-Elongation Processing of Intronless pre-mRNA	View Gene Set	0.001554	23	0.04197	39	REACTOME - Post-Elongation Processing of Intronless pre-mRNA gene set	www.pathwaycomm...
Null Processing of Capped Intronless Pre-mRNA	View Gene Set	0.001554	23	0.04197	39	REACTOME - Processing of Capped Intronless Pre-mRNA gene set	www.pathwaycomm...
Null DNA Replication Pre-Initiation	View Gene Set	0.001616	90	0.04197	39	REACTOME - DNA Replication Pre-Initiation gene set	www.pathwaycomm...
Null M/G1 Transition	View Gene Set	0.001616	90	0.04197	39	REACTOME - M/G1 Transition gene set	www.pathwaycomm...
Null Metabolism of mRNA	View Gene Set	0.001469	125	0.04197	39	REACTOME - Metabolism of mRNA gene set	www.pathwaycomm...
Null Apoptosis	View Gene Set	0.001656	148	0.04205	44	REACTOME - Apoptosis gene set	www.pathwaycomm...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-608	View Gene Set	2.176e-10	2815	1.473e-07	1	microRNA targets for hsa-miR-608 from miranda.targets	www.mirbase.org...
Null hsa-miR-423-5p	View Gene Set	1.809e-06	1898	0.0006122	2	microRNA targets for hsa-miR-423-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-1291	View Gene Set	7.187e-06	1386	0.001622	3	microRNA targets for hsa-miR-1291 from miranda.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	9.913e-06	1921	0.001678	4	microRNA targets for hsa-miR-486-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-661	View Gene Set	4.787e-05	2076	0.006481	5	microRNA targets for hsa-miR-661 from miranda.targets	www.mirbase.org...
Null hsa-miR-326	View Gene Set	7.452e-05	1567	0.008351	6	microRNA targets for hsa-miR-326 from miranda.targets	www.mirbase.org...
Null hsa-miR-331-3p	View Gene Set	8.635e-05	1191	0.008351	6	microRNA targets for hsa-miR-331-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-637	View Gene Set	0.0001022	2291	0.00865	8	microRNA targets for hsa-miR-637 from miranda.targets	www.mirbase.org...
Null hsa-miR-663b	View Gene Set	0.0001339	871	0.01008	9	microRNA targets for hsa-miR-663b from miranda.targets	www.mirbase.org...
Null hsa-miR-940	View Gene Set	0.0001636	1873	0.01107	10	microRNA targets for hsa-miR-940 from miranda.targets	www.mirbase.org...
Null hsa-miR-330-5p	View Gene Set	0.0003606	1945	0.02219	11	microRNA targets for hsa-miR-330-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-1281	View Gene Set	0.0004038	505	0.02278	12	microRNA targets for hsa-miR-1281 from miranda.targets	www.mirbase.org...
Null hsa-miR-760	View Gene Set	0.0004543	1689	0.02366	13	microRNA targets for hsa-miR-760 from miranda.targets	www.mirbase.org...
Null hsa-miR-1207-3p	View Gene Set	0.0007349	1414	0.03554	14	microRNA targets for hsa-miR-1207-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-324-3p	View Gene Set	0.0008946	1277	0.03629	15	microRNA targets for hsa-miR-324-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-615-5p	View Gene Set	0.0008705	1189	0.03629	15	microRNA targets for hsa-miR-615-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-886-3p	View Gene Set	0.0009113	377	0.03629	15	microRNA targets for hsa-miR-886-3p from miranda.targets	www.mirbase.org...
Null hsa-miR-1207-5p	View Gene Set	0.001023	2608	0.03849	18	microRNA targets for hsa-miR-1207-5p from miranda.targets	www.mirbase.org...
Null hsa-miR-296-5p	View Gene Set	0.001248	887	0.04445	19	microRNA targets for hsa-miR-296-5p from miranda.targets	www.mirbase.org...

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null hsa-miR-663	View Gene Set	9.461e-18	743	6.727e-15	1	microRNA targets for hsa-miR-663 from mirbase.targets	www.mirbase.org...
Null hsa-miR-296-5p	View Gene Set	1.954e-16	755	5.758e-14	2	microRNA targets for hsa-miR-296-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-423-5p	View Gene Set	2.429e-16	767	5.758e-14	2	microRNA targets for hsa-miR-423-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-886-5p	View Gene Set	1.102e-12	793	1.958e-10	4	microRNA targets for hsa-miR-886-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-940	View Gene Set	5.096e-12	660	7.246e-10	5	microRNA targets for hsa-miR-940 from mirbase.targets	www.mirbase.org...
Null hsa-miR-486-3p	View Gene Set	5.222e-11	773	5.775e-09	6	microRNA targets for hsa-miR-486-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-615-5p	View Gene Set	5.686e-11	848	5.775e-09	6	microRNA targets for hsa-miR-615-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-650	View Gene Set	1.618e-10	693	1.309e-08	8	microRNA targets for hsa-miR-650 from mirbase.targets	www.mirbase.org...
Null hsa-miR-744	View Gene Set	1.657e-10	715	1.309e-08	8	microRNA targets for hsa-miR-744 from mirbase.targets	www.mirbase.org...
Null hsa-miR-596	View Gene Set	4.586e-10	644	3.261e-08	10	microRNA targets for hsa-miR-596 from mirbase.targets	www.mirbase.org...
Null hsa-miR-324-3p	View Gene Set	5.68e-10	788	3.672e-08	11	microRNA targets for hsa-miR-324-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-92b*	View Gene Set	1.395e-09	648	8.265e-08	12	microRNA targets for hsa-miR-92b* from mirbase.targets	www.mirbase.org...
Null hsa-miR-608	View Gene Set	3.704e-09	729	2.026e-07	13	microRNA targets for hsa-miR-608 from mirbase.targets	www.mirbase.org...
Null hsa-miR-671-5p	View Gene Set	5.326e-09	813	2.705e-07	14	microRNA targets for hsa-miR-671-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-658	View Gene Set	8.392e-09	660	3.729e-07	15	microRNA targets for hsa-miR-658 from mirbase.targets	www.mirbase.org...
Null hsa-miR-675	View Gene Set	8.098e-09	686	3.729e-07	15	microRNA targets for hsa-miR-675 from mirbase.targets	www.mirbase.org...
Null hsa-miR-483-3p	View Gene Set	9.723e-09	702	4.066e-07	17	microRNA targets for hsa-miR-483-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-125b	View Gene Set	1.571e-08	831	6.105e-07	18	microRNA targets for hsa-miR-125b from mirbase.targets	www.mirbase.org...
Null hsa-miR-637	View Gene Set	1.631e-08	672	6.105e-07	18	microRNA targets for hsa-miR-637 from mirbase.targets	www.mirbase.org...
Null hsa-miR-125a-5p	View Gene Set	2.82e-08	817	1.003e-06	20	microRNA targets for hsa-miR-125a-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-484	View Gene Set	3.411e-08	733	1.155e-06	21	microRNA targets for hsa-miR-484 from mirbase.targets	www.mirbase.org...
Null hsa-miR-127-3p	View Gene Set	4.157e-08	653	1.305e-06	22	microRNA targets for hsa-miR-127-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-328	View Gene Set	4.223e-08	685	1.305e-06	22	microRNA targets for hsa-miR-328 from mirbase.targets	www.mirbase.org...
Null hsa-miR-532-3p	View Gene Set	5.329e-08	657	1.579e-06	24	microRNA targets for hsa-miR-532-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-330-5p	View Gene Set	1.196e-07	728	3.401e-06	25	microRNA targets for hsa-miR-330-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-647	View Gene Set	1.336e-07	724	3.654e-06	26	microRNA targets for hsa-miR-647 from mirbase.targets	www.mirbase.org...
Null hsa-miR-18a*	View Gene Set	1.557e-07	491	4.101e-06	27	microRNA targets for hsa-miR-18a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-941	View Gene Set	1.624e-07	590	4.125e-06	28	microRNA targets for hsa-miR-941 from mirbase.targets	www.mirbase.org...
Null hsa-miR-149	View Gene Set	1.722e-07	602	4.222e-06	29	microRNA targets for hsa-miR-149 from mirbase.targets	www.mirbase.org...
Null hsa-miR-920	View Gene Set	2.749e-07	661	6.516e-06	30	microRNA targets for hsa-miR-920 from mirbase.targets	www.mirbase.org...
Null hsa-miR-661	View Gene Set	3.33e-07	575	7.638e-06	31	microRNA targets for hsa-miR-661 from mirbase.targets	www.mirbase.org...
Null hsa-miR-615-3p	View Gene Set	3.602e-07	757	8.003e-06	32	microRNA targets for hsa-miR-615-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-296-3p	View Gene Set	4.407e-07	905	9.494e-06	33	microRNA targets for hsa-miR-296-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-631	View Gene Set	5.218e-07	714	1.091e-05	34	microRNA targets for hsa-miR-631 from mirbase.targets	www.mirbase.org...
Null hsa-miR-24	View Gene Set	5.578e-07	739	1.133e-05	35	microRNA targets for hsa-miR-24 from mirbase.targets	www.mirbase.org...
Null hsa-miR-885-3p	View Gene Set	5.884e-07	799	1.162e-05	36	microRNA targets for hsa-miR-885-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-604	View Gene Set	6.937e-07	691	1.333e-05	37	microRNA targets for hsa-miR-604 from mirbase.targets	www.mirbase.org...
Null hsa-miR-214	View Gene Set	7.397e-07	797	1.349e-05	38	microRNA targets for hsa-miR-214 from mirbase.targets	www.mirbase.org...
Null hsa-miR-541	View Gene Set	7.217e-07	711	1.349e-05	38	microRNA targets for hsa-miR-541 from mirbase.targets	www.mirbase.org...
Null hsa-miR-874	View Gene Set	9.26e-07	722	1.646e-05	40	microRNA targets for hsa-miR-874 from mirbase.targets	www.mirbase.org...
Null hsa-miR-769-3p	View Gene Set	1.592e-06	823	2.761e-05	41	microRNA targets for hsa-miR-769-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-572	View Gene Set	1.712e-06	602	2.898e-05	42	microRNA targets for hsa-miR-572 from mirbase.targets	www.mirbase.org...
Null hsa-miR-92a-2*	View Gene Set	2.065e-06	654	3.414e-05	43	microRNA targets for hsa-miR-92a-2* from mirbase.targets	www.mirbase.org...
Null hsa-miR-331-3p	View Gene Set	2.61e-06	712	4.217e-05	44	microRNA targets for hsa-miR-331-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-671-3p	View Gene Set	2.948e-06	767	4.658e-05	45	microRNA targets for hsa-miR-671-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-339-5p	View Gene Set	3.332e-06	659	5.041e-05	46	microRNA targets for hsa-miR-339-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-937	View Gene Set	3.289e-06	654	5.041e-05	46	microRNA targets for hsa-miR-937 from mirbase.targets	www.mirbase.org...
Null hsa-miR-542-5p	View Gene Set	3.514e-06	774	5.205e-05	48	microRNA targets for hsa-miR-542-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-149*	View Gene Set	4.948e-06	459	7.037e-05	49	microRNA targets for hsa-miR-149* from mirbase.targets	www.mirbase.org...
Null hsa-miR-505*	View Gene Set	4.919e-06	516	7.037e-05	49	microRNA targets for hsa-miR-505* from mirbase.targets	www.mirbase.org...
Null hsa-miR-194*	View Gene Set	5.315e-06	502	7.303e-05	51	microRNA targets for hsa-miR-194* from mirbase.targets	www.mirbase.org...
Null hsa-miR-765	View Gene Set	5.342e-06	674	7.303e-05	51	microRNA targets for hsa-miR-765 from mirbase.targets	www.mirbase.org...
Null hsa-miR-92a-1*	View Gene Set	5.871e-06	661	7.875e-05	53	microRNA targets for hsa-miR-92a-1* from mirbase.targets	www.mirbase.org...
Null hsa-miR-323-5p	View Gene Set	6.54e-06	763	8.611e-05	54	microRNA targets for hsa-miR-323-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-423-3p	View Gene Set	7.021e-06	741	9.077e-05	55	microRNA targets for hsa-miR-423-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-939	View Gene Set	8.62e-06	667	0.0001094	56	microRNA targets for hsa-miR-939 from mirbase.targets	www.mirbase.org...
Null hsa-miR-339-3p	View Gene Set	9.48e-06	797	0.0001182	57	microRNA targets for hsa-miR-339-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-346	View Gene Set	1e-05	568	0.0001226	58	microRNA targets for hsa-miR-346 from mirbase.targets	www.mirbase.org...
Null hsa-let-7b	View Gene Set	1.109e-05	775	0.0001337	59	microRNA targets for hsa-let-7b from mirbase.targets	www.mirbase.org...
Null hsa-miR-564	View Gene Set	1.162e-05	706	0.0001377	60	microRNA targets for hsa-miR-564 from mirbase.targets	www.mirbase.org...
Null hsa-miR-769-5p	View Gene Set	1.779e-05	790	0.0002074	61	microRNA targets for hsa-miR-769-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-342-5p	View Gene Set	2.34e-05	698	0.0002684	62	microRNA targets for hsa-miR-342-5p from mirbase.targets	www.mirbase.org...
Null hsa-let-7c	View Gene Set	2.991e-05	760	0.0003376	63	microRNA targets for hsa-let-7c from mirbase.targets	www.mirbase.org...
Null hsa-miR-483-5p	View Gene Set	3.271e-05	717	0.0003634	64	microRNA targets for hsa-miR-483-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-185*	View Gene Set	3.339e-05	506	0.0003653	65	microRNA targets for hsa-miR-185* from mirbase.targets	www.mirbase.org...
Null hsa-miR-326	View Gene Set	4.245e-05	650	0.0004504	66	microRNA targets for hsa-miR-326 from mirbase.targets	www.mirbase.org...
Null hsa-miR-877*	View Gene Set	4.185e-05	479	0.0004504	66	microRNA targets for hsa-miR-877* from mirbase.targets	www.mirbase.org...
Null hsa-miR-15a*	View Gene Set	6.156e-05	554	0.0006437	68	microRNA targets for hsa-miR-15a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-214*	View Gene Set	6.803e-05	434	0.0006813	69	microRNA targets for hsa-miR-214* from mirbase.targets	www.mirbase.org...
Null hsa-miR-760	View Gene Set	6.753e-05	690	0.0006813	69	microRNA targets for hsa-miR-760 from mirbase.targets	www.mirbase.org...
Null hsa-miR-886-3p	View Gene Set	6.673e-05	745	0.0006813	69	microRNA targets for hsa-miR-886-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-198	View Gene Set	7.299e-05	783	0.0007208	72	microRNA targets for hsa-miR-198 from mirbase.targets	www.mirbase.org...
Null hsa-miR-491-5p	View Gene Set	7.522e-05	731	0.0007253	73	microRNA targets for hsa-miR-491-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-933	View Gene Set	7.548e-05	618	0.0007253	73	microRNA targets for hsa-miR-933 from mirbase.targets	www.mirbase.org...
Null hsa-miR-662	View Gene Set	8.643e-05	663	0.0008193	75	microRNA targets for hsa-miR-662 from mirbase.targets	www.mirbase.org...
Null hsa-miR-218-1*	View Gene Set	9.751e-05	528	0.0009004	76	microRNA targets for hsa-miR-218-1* from mirbase.targets	www.mirbase.org...
Null hsa-miR-560	View Gene Set	9.659e-05	730	0.0009004	76	microRNA targets for hsa-miR-560 from mirbase.targets	www.mirbase.org...
Null hsa-miR-147b	View Gene Set	0.0001109	736	0.0009977	78	microRNA targets for hsa-miR-147b from mirbase.targets	www.mirbase.org...
Null hsa-miR-412	View Gene Set	0.0001095	627	0.0009977	78	microRNA targets for hsa-miR-412 from mirbase.targets	www.mirbase.org...
Null hsa-miR-492	View Gene Set	0.0001214	625	0.001079	80	microRNA targets for hsa-miR-492 from mirbase.targets	www.mirbase.org...
Null hsa-miR-638	View Gene Set	0.0001255	639	0.001102	81	microRNA targets for hsa-miR-638 from mirbase.targets	www.mirbase.org...
Null hsa-miR-619	View Gene Set	0.0001277	674	0.001107	82	microRNA targets for hsa-miR-619 from mirbase.targets	www.mirbase.org...
Null hsa-miR-551a	View Gene Set	0.0001397	676	0.001197	83	microRNA targets for hsa-miR-551a from mirbase.targets	www.mirbase.org...
Null hsa-miR-370	View Gene Set	0.0001893	710	0.001603	84	microRNA targets for hsa-miR-370 from mirbase.targets	www.mirbase.org...
Null hsa-miR-636	View Gene Set	0.0002201	600	0.00183	85	microRNA targets for hsa-miR-636 from mirbase.targets	www.mirbase.org...
Null hsa-miR-654-5p	View Gene Set	0.0002214	718	0.00183	85	microRNA targets for hsa-miR-654-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-184	View Gene Set	0.0002323	713	0.001899	87	microRNA targets for hsa-miR-184 from mirbase.targets	www.mirbase.org...
Null hsa-miR-34c-5p	View Gene Set	0.0002712	879	0.002191	88	microRNA targets for hsa-miR-34c-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-151-5p	View Gene Set	0.0002879	749	0.0023	89	microRNA targets for hsa-miR-151-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-146b-3p	View Gene Set	0.0003	695	0.00237	90	microRNA targets for hsa-miR-146b-3p from mirbase.targets	www.mirbase.org...
Null hsa-let-7i	View Gene Set	0.0003419	808	0.002642	91	microRNA targets for hsa-let-7i from mirbase.targets	www.mirbase.org...
Null hsa-miR-659	View Gene Set	0.000341	705	0.002642	91	microRNA targets for hsa-miR-659 from mirbase.targets	www.mirbase.org...
Null hsa-miR-18b*	View Gene Set	0.0003618	565	0.002737	93	microRNA targets for hsa-miR-18b* from mirbase.targets	www.mirbase.org...
Null hsa-miR-493	View Gene Set	0.0003593	755	0.002737	93	microRNA targets for hsa-miR-493 from mirbase.targets	www.mirbase.org...
Null hsa-miR-25*	View Gene Set	0.0003935	418	0.002945	95	microRNA targets for hsa-miR-25* from mirbase.targets	www.mirbase.org...
Null hsa-let-7d	View Gene Set	0.0003982	796	0.002949	96	microRNA targets for hsa-let-7d from mirbase.targets	www.mirbase.org...
Null hsa-miR-554	View Gene Set	0.0004102	708	0.003007	97	microRNA targets for hsa-miR-554 from mirbase.targets	www.mirbase.org...
Null hsa-miR-571	View Gene Set	0.0004811	720	0.00349	98	microRNA targets for hsa-miR-571 from mirbase.targets	www.mirbase.org...
Null hsa-miR-361-3p	View Gene Set	0.0004947	634	0.003553	99	microRNA targets for hsa-miR-361-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-188-3p	View Gene Set	0.0005049	637	0.00359	100	microRNA targets for hsa-miR-188-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-623	View Gene Set	0.0005221	693	0.003676	101	microRNA targets for hsa-miR-623 from mirbase.targets	www.mirbase.org...
Null hsa-miR-657	View Gene Set	0.0006372	718	0.004442	102	microRNA targets for hsa-miR-657 from mirbase.targets	www.mirbase.org...
Null hsa-miR-220b	View Gene Set	0.0006981	852	0.004819	103	microRNA targets for hsa-miR-220b from mirbase.targets	www.mirbase.org...
Null hsa-miR-524-3p	View Gene Set	0.0007218	791	0.004935	104	microRNA targets for hsa-miR-524-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-23a*	View Gene Set	0.0007423	604	0.005027	105	microRNA targets for hsa-miR-23a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-133a	View Gene Set	0.0008807	763	0.005852	106	microRNA targets for hsa-miR-133a from mirbase.targets	www.mirbase.org...
Null hsa-miR-512-5p	View Gene Set	0.0008735	693	0.005852	106	microRNA targets for hsa-miR-512-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-767-3p	View Gene Set	0.0009327	784	0.00614	108	microRNA targets for hsa-miR-767-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-188-5p	View Gene Set	0.0009498	732	0.006194	109	microRNA targets for hsa-miR-188-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-614	View Gene Set	0.0009583	578	0.006194	109	microRNA targets for hsa-miR-614 from mirbase.targets	www.mirbase.org...
Null hsa-miR-766	View Gene Set	0.001022	517	0.006545	111	microRNA targets for hsa-miR-766 from mirbase.targets	www.mirbase.org...
Null hsa-miR-566	View Gene Set	0.001102	787	0.006998	112	microRNA targets for hsa-miR-566 from mirbase.targets	www.mirbase.org...
Null hsa-miR-602	View Gene Set	0.001237	710	0.007781	113	microRNA targets for hsa-miR-602 from mirbase.targets	www.mirbase.org...
Null hsa-miR-525-3p	View Gene Set	0.00126	790	0.007857	114	microRNA targets for hsa-miR-525-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-512-3p	View Gene Set	0.001353	697	0.008366	115	microRNA targets for hsa-miR-512-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-612	View Gene Set	0.001378	685	0.008445	116	microRNA targets for hsa-miR-612 from mirbase.targets	www.mirbase.org...
Null hsa-miR-27a*	View Gene Set	0.001413	616	0.008588	117	microRNA targets for hsa-miR-27a* from mirbase.targets	www.mirbase.org...
Null hsa-miR-516b	View Gene Set	0.001442	845	0.008687	118	microRNA targets for hsa-miR-516b from mirbase.targets	www.mirbase.org...
Null hsa-miR-611	View Gene Set	0.001459	671	0.008715	119	microRNA targets for hsa-miR-611 from mirbase.targets	www.mirbase.org...
Null hsa-miR-565	View Gene Set	0.001502	689	0.008902	120	microRNA targets for hsa-miR-565 from mirbase.targets	www.mirbase.org...
Null hsa-miR-485-5p	View Gene Set	0.001526	556	0.008966	121	microRNA targets for hsa-miR-485-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-629*	View Gene Set	0.001663	382	0.009693	122	microRNA targets for hsa-miR-629* from mirbase.targets	www.mirbase.org...
Null hsa-miR-923	View Gene Set	0.001699	690	0.009822	123	microRNA targets for hsa-miR-923 from mirbase.targets	www.mirbase.org...
Null hsa-miR-342-3p	View Gene Set	0.001851	749	0.01048	124	microRNA targets for hsa-miR-342-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-622	View Gene Set	0.001849	635	0.01048	124	microRNA targets for hsa-miR-622 from mirbase.targets	www.mirbase.org...
Null hsa-miR-892b	View Gene Set	0.001857	726	0.01048	124	microRNA targets for hsa-miR-892b from mirbase.targets	www.mirbase.org...
Null hsa-miR-139-3p	View Gene Set	0.001873	736	0.01049	127	microRNA targets for hsa-miR-139-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-34a	View Gene Set	0.002022	917	0.01123	128	microRNA targets for hsa-miR-34a from mirbase.targets	www.mirbase.org...
Null hsa-let-7e	View Gene Set	0.00221	778	0.012	129	microRNA targets for hsa-let-7e from mirbase.targets	www.mirbase.org...
Null hsa-miR-193b	View Gene Set	0.00221	716	0.012	129	microRNA targets for hsa-miR-193b from mirbase.targets	www.mirbase.org...
Null hsa-miR-525-5p	View Gene Set	0.002205	784	0.012	129	microRNA targets for hsa-miR-525-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-672	View Gene Set	0.002497	608	0.01345	132	microRNA targets for hsa-miR-672 from mirbase.targets	www.mirbase.org...
Null hsa-miR-193b*	View Gene Set	0.002599	586	0.01389	133	microRNA targets for hsa-miR-193b* from mirbase.targets	www.mirbase.org...
Null hsa-miR-520a-5p	View Gene Set	0.002921	933	0.0155	134	microRNA targets for hsa-miR-520a-5p from mirbase.targets	www.mirbase.org...
Null hsa-let-7a	View Gene Set	0.003041	808	0.016	135	microRNA targets for hsa-let-7a from mirbase.targets	www.mirbase.org...
Null hsa-miR-510	View Gene Set	0.00306	639	0.016	135	microRNA targets for hsa-miR-510 from mirbase.targets	www.mirbase.org...
Null hsa-miR-133b	View Gene Set	0.003185	770	0.01629	137	microRNA targets for hsa-miR-133b from mirbase.targets	www.mirbase.org...
Null hsa-miR-30b*	View Gene Set	0.003178	655	0.01629	137	microRNA targets for hsa-miR-30b* from mirbase.targets	www.mirbase.org...
Null hsa-miR-30c-1*	View Gene Set	0.003207	741	0.01629	137	microRNA targets for hsa-miR-30c-1* from mirbase.targets	www.mirbase.org...
Null hsa-miR-593	View Gene Set	0.003176	556	0.01629	137	microRNA targets for hsa-miR-593 from mirbase.targets	www.mirbase.org...
Null hsa-miR-490-3p	View Gene Set	0.003242	685	0.01635	141	microRNA targets for hsa-miR-490-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-345	View Gene Set	0.00335	696	0.01677	142	microRNA targets for hsa-miR-345 from mirbase.targets	www.mirbase.org...
Null hsa-miR-593*	View Gene Set	0.003544	504	0.01762	143	microRNA targets for hsa-miR-593* from mirbase.targets	www.mirbase.org...
Null hsa-miR-646	View Gene Set	0.003752	745	0.01853	144	microRNA targets for hsa-miR-646 from mirbase.targets	www.mirbase.org...
Null hsa-miR-191*	View Gene Set	0.003842	462	0.01858	145	microRNA targets for hsa-miR-191* from mirbase.targets	www.mirbase.org...
Null hsa-miR-504	View Gene Set	0.003819	621	0.01858	145	microRNA targets for hsa-miR-504 from mirbase.targets	www.mirbase.org...
Null hsa-miR-642	View Gene Set	0.003831	609	0.01858	145	microRNA targets for hsa-miR-642 from mirbase.targets	www.mirbase.org...
Null hsa-miR-93	View Gene Set	0.003914	897	0.0188	148	microRNA targets for hsa-miR-93 from mirbase.targets	www.mirbase.org...
Null hsa-miR-665	View Gene Set	0.004062	617	0.01939	149	microRNA targets for hsa-miR-665 from mirbase.targets	www.mirbase.org...
Null hsa-miR-645	View Gene Set	0.004362	569	0.02068	150	microRNA targets for hsa-miR-645 from mirbase.targets	www.mirbase.org...
Null hsa-miR-877	View Gene Set	0.004521	668	0.02129	151	microRNA targets for hsa-miR-877 from mirbase.targets	www.mirbase.org...
Null hsa-miR-129*	View Gene Set	0.004938	504	0.0231	152	microRNA targets for hsa-miR-129* from mirbase.targets	www.mirbase.org...
Null hsa-miR-378*	View Gene Set	0.005239	686	0.02435	153	microRNA targets for hsa-miR-378* from mirbase.targets	www.mirbase.org...
Null hsa-miR-125b-1*	View Gene Set	0.005483	622	0.02506	154	microRNA targets for hsa-miR-125b-1* from mirbase.targets	www.mirbase.org...
Null hsa-miR-486-5p	View Gene Set	0.005499	729	0.02506	154	microRNA targets for hsa-miR-486-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-770-5p	View Gene Set	0.005446	702	0.02506	154	microRNA targets for hsa-miR-770-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-147	View Gene Set	0.005611	740	0.02541	157	microRNA targets for hsa-miR-147 from mirbase.targets	www.mirbase.org...
Null hsa-miR-151-3p	View Gene Set	0.006041	739	0.02718	158	microRNA targets for hsa-miR-151-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-632	View Gene Set	0.006502	690	0.02907	159	microRNA targets for hsa-miR-632 from mirbase.targets	www.mirbase.org...
Null hsa-let-7g	View Gene Set	0.006912	797	0.03071	160	microRNA targets for hsa-let-7g from mirbase.targets	www.mirbase.org...
Null hsa-miR-324-5p	View Gene Set	0.006982	801	0.03083	161	microRNA targets for hsa-miR-324-5p from mirbase.targets	www.mirbase.org...
Null hsa-miR-26b*	View Gene Set	0.007127	555	0.03128	162	microRNA targets for hsa-miR-26b* from mirbase.targets	www.mirbase.org...
Null hsa-miR-601	View Gene Set	0.00719	699	0.03136	163	microRNA targets for hsa-miR-601 from mirbase.targets	www.mirbase.org...
Null hsa-miR-575	View Gene Set	0.007622	738	0.03305	164	microRNA targets for hsa-miR-575 from mirbase.targets	www.mirbase.org...
Null hsa-miR-450b-3p	View Gene Set	0.008212	738	0.03539	165	microRNA targets for hsa-miR-450b-3p from mirbase.targets	www.mirbase.org...
Null hsa-miR-652	View Gene Set	0.008948	662	0.03832	166	microRNA targets for hsa-miR-652 from mirbase.targets	www.mirbase.org...
Null hsa-miR-197	View Gene Set	0.01016	609	0.04327	167	microRNA targets for hsa-miR-197 from mirbase.targets	www.mirbase.org...
Null hsa-miR-591	View Gene Set	0.01055	742	0.04465	168	microRNA targets for hsa-miR-591 from mirbase.targets	www.mirbase.org...
Null hsa-miR-30c-2*	View Gene Set	0.01074	758	0.04517	169	microRNA targets for hsa-miR-30c-2* from mirbase.targets	www.mirbase.org...
Null hsa-miR-503	View Gene Set	0.01138	748	0.04759	170	microRNA targets for hsa-miR-503 from mirbase.targets	www.mirbase.org...
Null hsa-miR-220c	View Gene Set	0.01162	831	0.0483	171	microRNA targets for hsa-miR-220c from mirbase.targets	www.mirbase.org...
Null hsa-miR-204	View Gene Set	0.01181	640	0.04877	172	microRNA targets for hsa-miR-204 from mirbase.targets	www.mirbase.org...
Null hsa-miR-99b*	View Gene Set	0.01187	571	0.04877	172	microRNA targets for hsa-miR-99b* from mirbase.targets	www.mirbase.org...
Null hsa-miR-922	View Gene Set	0.01198	721	0.04896	174	microRNA targets for hsa-miR-922 from mirbase.targets	www.mirbase.org...

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name	GeneSetDescription	Value	Gene Set Size	Corrected Value	Ranking	Description	URL
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608	View Gene Set	3.971e-15	3384	9.188e-12	1	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-608 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p	View Gene Set	1.208e-13	2496	1.397e-10	2	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663	View Gene Set	2.103e-13	1582	1.622e-10	3	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-663 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p	View Gene Set	5.487e-12	1519	3.174e-09	4	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p	View Gene Set	2.114e-11	2545	9.786e-09	5	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-486-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p	View Gene Set	9.029e-09	1865	2.985e-06	6	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p	View Gene Set	8.542e-09	1187	2.985e-06	6	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	2.879e-08	2574	7.402e-06	8	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p	View Gene Set	2.618e-08	1096	7.402e-06	8	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p	View Gene Set	4.388e-08	1946	9.06e-06	10	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572	View Gene Set	4.549e-08	825	9.06e-06	10	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-572 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-326	View Gene Set	4.954e-08	2171	9.06e-06	10	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-127-3p	View Gene Set	5.09e-08	662	9.06e-06	10	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-127-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326	View Gene Set	6.688e-08	2147	9.503e-06	14	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p	View Gene Set	7.683e-08	2597	9.503e-06	14	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661	View Gene Set	6.539e-08	2615	9.503e-06	14	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-661 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744	View Gene Set	7.803e-08	1378	9.503e-06	14	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-744 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-326	View Gene Set	6.474e-08	2156	9.503e-06	14	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b	View Gene Set	7.595e-08	1252	9.503e-06	14	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b	View Gene Set	8.782e-08	1376	1.016e-05	20	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-214	View Gene Set	1.017e-07	1420	1.12e-05	21	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p	View Gene Set	1.098e-07	1375	1.155e-05	22	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p	View Gene Set	1.229e-07	1941	1.236e-05	23	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940	View Gene Set	1.409e-07	2504	1.359e-05	24	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-940 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-328	View Gene Set	1.654e-07	916	1.531e-05	25	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125b	View Gene Set	1.912e-07	1849	1.702e-05	26	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-125b	View Gene Set	3.049e-07	1421	2.613e-05	27	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p	View Gene Set	3.215e-07	1764	2.657e-05	28	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-331-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675	View Gene Set	3.456e-07	1108	2.758e-05	29	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-675 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p	View Gene Set	4.591e-07	764	3.541e-05	30	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637	View Gene Set	5.886e-07	2846	4.394e-05	31	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-637 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125b	View Gene Set	8.055e-07	2046	5.825e-05	32	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-125b	View Gene Set	8.689e-07	1969	6.093e-05	33	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-125b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-127-3p	View Gene Set	1.078e-06	912	7.127e-05	34	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-127-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564	View Gene Set	1.068e-06	1071	7.127e-05	34	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-564 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-127-3p	View Gene Set	1.169e-06	912	7.514e-05	36	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-127-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p	View Gene Set	1.45e-06	1485	9.069e-05	37	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-323-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-647	View Gene Set	1.766e-06	1863	0.0001076	38	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-647 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-149	View Gene Set	1.95e-06	940	0.0001157	39	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328	View Gene Set	2.334e-06	946	0.000135	40	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.tarbase.targetsUnion.hsa-miR-24	View Gene Set	2.631e-06	989	0.0001485	41	microRNA targets for mirbase.pictar.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-3p	View Gene Set	3.598e-06	1039	0.0001982	42	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-886-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328	View Gene Set	5.665e-06	872	0.0003048	43	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760	View Gene Set	6.761e-06	2252	0.0003556	44	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-760 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-24	View Gene Set	6.929e-06	2222	0.0003563	45	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p	View Gene Set	7.09e-06	1113	0.0003567	46	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p	View Gene Set	7.536e-06	1112	0.000371	47	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-615-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604	View Gene Set	8.014e-06	1079	0.0003803	48	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-604 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-149	View Gene Set	8.054e-06	975	0.0003803	48	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-149 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p	View Gene Set	8.651e-06	1053	0.0004004	50	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-423-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214	View Gene Set	1.057e-05	1389	0.0004794	51	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-149	View Gene Set	1.193e-05	935	0.0005309	52	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-149 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650	View Gene Set	1.304e-05	2314	0.0005692	53	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-650 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125a-5p	View Gene Set	1.484e-05	1986	0.0006283	54	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p	View Gene Set	1.52e-05	1618	0.0006283	54	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-885-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-296-3p	View Gene Set	1.517e-05	1042	0.0006283	54	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-532-3p	View Gene Set	1.587e-05	1959	0.0006443	57	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-532-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p	View Gene Set	1.699e-05	1790	0.0006776	58	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-941	View Gene Set	1.814e-05	992	0.0007116	59	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-941 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214	View Gene Set	1.865e-05	1354	0.0007194	60	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-5p	View Gene Set	2.441e-05	2173	0.0009261	61	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-125a-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-874	View Gene Set	2.656e-05	1806	0.0009912	62	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-542-5p	View Gene Set	2.838e-05	1145	0.001042	63	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-542-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.tarbase.targetsUnion.hsa-miR-24	View Gene Set	3.19e-05	2089	0.001153	64	microRNA targets for miranda.mirbase.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-3p	View Gene Set	3.376e-05	1648	0.001202	65	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-24	View Gene Set	3.454e-05	1137	0.001211	66	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937	View Gene Set	3.897e-05	820	0.001346	67	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-937 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-24	View Gene Set	4.358e-05	2258	0.001483	68	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	4.517e-05	1142	0.001515	69	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541	View Gene Set	4.722e-05	1832	0.001561	70	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-541 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-24	View Gene Set	4.801e-05	2189	0.001565	71	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-484	View Gene Set	5.199e-05	1853	0.001648	72	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-484 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-326	View Gene Set	5.163e-05	1789	0.001648	72	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.tarbase.targetscan.targetsUnion.hsa-miR-24	View Gene Set	5.393e-05	1108	0.001687	74	microRNA targets for mirbase.tarbase.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-346	View Gene Set	5.491e-05	704	0.001694	75	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-24	View Gene Set	5.787e-05	938	0.001762	76	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p	View Gene Set	6.201e-05	1044	0.001864	77	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-214	View Gene Set	6.962e-05	2872	0.001941	78	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-328	View Gene Set	6.751e-05	1838	0.001941	78	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-326	View Gene Set	6.902e-05	1819	0.001941	78	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	6.845e-05	1813	0.001941	78	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p	View Gene Set	6.544e-05	954	0.001941	78	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-24	View Gene Set	6.83e-05	1215	0.001941	78	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-769-3p	View Gene Set	7.294e-05	1837	0.002009	84	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-769-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-5p	View Gene Set	7.652e-05	1342	0.002083	85	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-483-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-328	View Gene Set	8.804e-05	1892	0.002369	86	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596	View Gene Set	9.687e-05	1484	0.002576	87	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-596 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p	View Gene Set	9.931e-05	1899	0.002582	88	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-339-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939	View Gene Set	9.831e-05	2729	0.002582	88	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-939 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-214	View Gene Set	0.0001043	2832	0.002683	90	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-920	View Gene Set	0.0001141	1935	0.002903	91	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-920 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328	View Gene Set	0.0001209	1858	0.003042	92	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-328 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.0001227	1071	0.003052	93	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-551a	View Gene Set	0.0001307	687	0.003217	94	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-551a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874	View Gene Set	0.0001543	1840	0.003758	95	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-874 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-3p	View Gene Set	0.0001632	1092	0.003935	96	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-5p	View Gene Set	0.0001805	2249	0.004306	97	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-671-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-566	View Gene Set	0.0002019	1066	0.004767	98	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-566 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p	View Gene Set	0.0002046	2177	0.004782	99	microRNA targets for miranda.mirtarget2.targetscan.targetsUnion.hsa-miR-330-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-638	View Gene Set	0.0002194	1054	0.005076	100	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-638 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-485-5p	View Gene Set	0.000251	2302	0.005694	101	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-184	View Gene Set	0.0002496	738	0.005694	101	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-184 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326	View Gene Set	0.000301	1066	0.006763	103	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-631	View Gene Set	0.0003089	1374	0.006853	104	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-631 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-485-5p	View Gene Set	0.0003126	2231	0.006853	104	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-485-5p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-184	View Gene Set	0.0003139	735	0.006853	104	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-184 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-766	View Gene Set	0.0003242	2106	0.007011	107	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-766 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874	View Gene Set	0.0003481	975	0.007457	108	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-874 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-214	View Gene Set	0.0003744	2823	0.007877	109	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-193b	View Gene Set	0.0003714	938	0.007877	109	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-193b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-24	View Gene Set	0.0004516	1220	0.009415	111	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-24 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326	View Gene Set	0.0004723	1065	0.009758	112	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-326 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-346	View Gene Set	0.0005274	746	0.0108	113	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-184	View Gene Set	0.0005426	736	0.01101	114	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-184 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-151-5p	View Gene Set	0.0005533	1244	0.01113	115	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-151-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-525-3p	View Gene Set	0.0006229	1112	0.01243	116	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-525-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-346	View Gene Set	0.0006424	1493	0.01271	117	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-346 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-370	View Gene Set	0.0006858	1067	0.01345	118	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-370 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p	View Gene Set	0.0007194	1681	0.01399	119	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-654-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-147b	View Gene Set	0.0007397	1009	0.01426	120	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-147b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.tarbase.targetsUnion.hsa-let-7b	View Gene Set	0.0007777	977	0.01487	121	microRNA targets for mirbase.mirtarget2.tarbase.targetsUnion.hsa-let-7b from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-346	View Gene Set	0.0008035	742	0.01524	122	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-346 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p	View Gene Set	0.0008648	1505	0.01627	123	microRNA targets for miranda.mirtarget2.pictar.targetsUnion.hsa-miR-324-3p from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-491-5p	View Gene Set	0.000899	954	0.01678	124	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-491-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-933	View Gene Set	0.0009242	854	0.01711	125	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-933 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-361-3p	View Gene Set	0.0009516	2123	0.01748	126	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-361-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-139-3p	View Gene Set	0.0009614	1002	0.01752	127	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-139-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-524-3p	View Gene Set	0.001071	1058	0.01935	128	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-524-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612	View Gene Set	0.001101	2970	0.01975	129	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-612 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-193b	View Gene Set	0.001142	913	0.02033	130	microRNA targets for mirbase.mirtarget2.targetscan.targetsUnion.hsa-miR-193b from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611	View Gene Set	0.001196	1017	0.02112	131	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-611 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-551a	View Gene Set	0.001292	920	0.02265	132	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-551a from miRNAtargetUnion	www.mirbase.org...
Null mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-198	View Gene Set	0.001375	1112	0.02392	133	microRNA targets for mirbase.mirtarget2.pictar.targetsUnion.hsa-miR-198 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-296-3p	View Gene Set	0.001517	2354	0.02619	134	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-652	View Gene Set	0.001563	846	0.0268	135	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-652 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-342-5p	View Gene Set	0.001592	1470	0.02708	136	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-342-5p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-551a	View Gene Set	0.001635	924	0.02761	137	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-551a from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-3p	View Gene Set	0.001697	2397	0.02845	138	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-296-3p from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.pictar.targetsUnion.hsa-miR-346	View Gene Set	0.002244	1502	0.03736	139	microRNA targets for miranda.mirbase.pictar.targetsUnion.hsa-miR-346 from miRNAtargetUnion	www.mirbase.org...
Null miranda.pictar.targetscan.targetsUnion.hsa-miR-214	View Gene Set	0.002833	2503	0.04683	140	microRNA targets for miranda.pictar.targetscan.targetsUnion.hsa-miR-214 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.targetscan.targetsUnion.hsa-miR-138	View Gene Set	0.002937	2308	0.0482	141	microRNA targets for miranda.mirbase.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion	www.mirbase.org...
Null mirbase.pictar.targetscan.targetsUnion.hsa-miR-138	View Gene Set	0.003005	1314	0.04897	142	microRNA targets for mirbase.pictar.targetscan.targetsUnion.hsa-miR-138 from miRNAtargetUnion	www.mirbase.org...
Null miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-575	View Gene Set	0.003069	1599	0.04966	143	microRNA targets for miranda.mirbase.mirtarget2.targetsUnion.hsa-miR-575 from miRNAtargetUnion	www.mirbase.org...

Results

AFA results for: tdrugda2PC3

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Broad.c5.MF

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.BioGRID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.HPRD

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: ppi.anyDB

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.cell-map

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Collection: miRNAtargetUnion

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down