Results

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Go to: Gene Set Collection: KEGG
Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.KEGG
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: ppi.BIND
Go to: Gene Set Collection: pictar.targets
Go to: Gene Set Collection: hprdBatch.DOWN
Go to: Gene Set Collection: hprdManual.DOWN

AFA results for: tlineda2VPA

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04145 View Gene Set 7.059e-05 158 0.007554 1 Phagosome www.genome.jp/d...
KEGG 05330 View Gene Set 6.368e-05 39 0.007554 1 Allograft rejection www.genome.jp/d...
KEGG 05416 View Gene Set 0.000248 74 0.01769 3 Viral myocarditis www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0042611 View Gene Set 4.479e-07 36 0.005984 1 MHC protein complex amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr1q21 View Gene Set 5.312e-12 306 1.732e-09 1 Genes in cytogenetic band chr1q21 www.broad.mit.e...
Broad chr4p16 View Gene Set 8.612e-10 126 9.358e-08 2 Genes in cytogenetic band chr4p16 www.broad.mit.e...
Broad chr15q22 View Gene Set 5.991e-10 87 9.358e-08 2 Genes in cytogenetic band chr15q22 www.broad.mit.e...
Broad chr15q21 View Gene Set 3.951e-09 95 3.22e-07 4 Genes in cytogenetic band chr15q21 www.broad.mit.e...
Broad chr17p13 View Gene Set 9.315e-08 225 5.061e-06 5 Genes in cytogenetic band chr17p13 www.broad.mit.e...
Broad chr12q13 View Gene Set 8.559e-08 257 5.061e-06 5 Genes in cytogenetic band chr12q13 www.broad.mit.e...
Broad chr17q11 View Gene Set 1.339e-07 118 6.235e-06 7 Genes in cytogenetic band chr17q11 www.broad.mit.e...
Broad chr7q22 View Gene Set 2.372e-07 106 9.417e-06 8 Genes in cytogenetic band chr7q22 www.broad.mit.e...
Broad chr16q12 View Gene Set 2.6e-07 49 9.417e-06 8 Genes in cytogenetic band chr16q12 www.broad.mit.e...
Broad chr9q34 View Gene Set 6.776e-07 204 2.209e-05 10 Genes in cytogenetic band chr9q34 www.broad.mit.e...
Broad chr10q24 View Gene Set 5.471e-06 97 0.0001506 11 Genes in cytogenetic band chr10q24 www.broad.mit.e...
Broad chr9q21 View Gene Set 5.545e-06 58 0.0001506 11 Genes in cytogenetic band chr9q21 www.broad.mit.e...
Broad chr14q13 View Gene Set 6.253e-06 41 0.0001568 13 Genes in cytogenetic band chr14q13 www.broad.mit.e...
Broad chr5q31 View Gene Set 1.19e-05 207 0.0002772 14 Genes in cytogenetic band chr5q31 www.broad.mit.e...
Broad chr16q22 View Gene Set 1.992e-05 131 0.0004329 15 Genes in cytogenetic band chr16q22 www.broad.mit.e...
Broad chr7q31 View Gene Set 2.957e-05 94 0.0006025 16 Genes in cytogenetic band chr7q31 www.broad.mit.e...
Broad chr12q12 View Gene Set 4.127e-05 63 0.0007914 17 Genes in cytogenetic band chr12q12 www.broad.mit.e...
Broad chr9p13 View Gene Set 4.792e-05 79 0.0008678 18 Genes in cytogenetic band chr9p13 www.broad.mit.e...
Broad chr6p21 View Gene Set 7.47e-05 479 0.001282 19 Genes in cytogenetic band chr6p21 www.broad.mit.e...
Broad chr9q33 View Gene Set 8.624e-05 65 0.001406 20 Genes in cytogenetic band chr9q33 www.broad.mit.e...
Broad chr4p15 View Gene Set 0.0001312 55 0.002037 21 Genes in cytogenetic band chr4p15 www.broad.mit.e...
Broad chr9q22 View Gene Set 0.0001964 105 0.002834 22 Genes in cytogenetic band chr9q22 www.broad.mit.e...
Broad chr18q12 View Gene Set 0.0002 53 0.002834 22 Genes in cytogenetic band chr18q12 www.broad.mit.e...
Broad chr14q21 View Gene Set 0.0002108 53 0.002863 24 Genes in cytogenetic band chr14q21 www.broad.mit.e...
Broad chr8p21 View Gene Set 0.0002681 89 0.003496 25 Genes in cytogenetic band chr8p21 www.broad.mit.e...
Broad chr2p23 View Gene Set 0.0004031 71 0.004867 26 Genes in cytogenetic band chr2p23 www.broad.mit.e...
Broad chr18q11 View Gene Set 0.0003885 41 0.004867 26 Genes in cytogenetic band chr18q11 www.broad.mit.e...
Broad chr10p15 View Gene Set 0.0004831 48 0.00525 28 Genes in cytogenetic band chr10p15 www.broad.mit.e...
Broad chr1p31 View Gene Set 0.000481 106 0.00525 28 Genes in cytogenetic band chr1p31 www.broad.mit.e...
Broad chr7q11 View Gene Set 0.0004784 136 0.00525 28 Genes in cytogenetic band chr7q11 www.broad.mit.e...
Broad chr9q31 View Gene Set 0.0006287 64 0.006612 31 Genes in cytogenetic band chr9q31 www.broad.mit.e...
Broad chr16q13 View Gene Set 0.0006839 45 0.006967 32 Genes in cytogenetic band chr16q13 www.broad.mit.e...
Broad chr12q22 View Gene Set 0.001269 37 0.01217 33 Genes in cytogenetic band chr12q22 www.broad.mit.e...
Broad chr1q25 View Gene Set 0.001238 90 0.01217 33 Genes in cytogenetic band chr1q25 www.broad.mit.e...
Broad chr3q22 View Gene Set 0.001415 47 0.01318 35 Genes in cytogenetic band chr3q22 www.broad.mit.e...
Broad chr10q25 View Gene Set 0.002261 49 0.02048 36 Genes in cytogenetic band chr10q25 www.broad.mit.e...
Broad chr16q24 View Gene Set 0.003005 88 0.02647 37 Genes in cytogenetic band chr16q24 www.broad.mit.e...
Broad chr12q14 View Gene Set 0.003899 44 0.0326 38 Genes in cytogenetic band chr12q14 www.broad.mit.e...
Broad chr9q13 View Gene Set 0.0039 21 0.0326 38 Genes in cytogenetic band chr9q13 www.broad.mit.e...
Broad chr10q23 View Gene Set 0.004055 103 0.03286 40 Genes in cytogenetic band chr10q23 www.broad.mit.e...
Broad chr16q21 View Gene Set 0.004132 22 0.03286 40 Genes in cytogenetic band chr16q21 www.broad.mit.e...
Broad chr12p13 View Gene Set 0.004463 213 0.03464 42 Genes in cytogenetic band chr12p13 www.broad.mit.e...
Broad chr22q11 View Gene Set 0.005407 298 0.041 43 Genes in cytogenetic band chr22q11 www.broad.mit.e...
Broad chr5q23 View Gene Set 0.006393 65 0.04737 44 Genes in cytogenetic band chr5q23 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad LINDGREN_BLADDER_CANCER_WITH_LOH_IN_CHR9Q View Gene Set 5.72e-14 106 1.368e-10 1 Genes down-regulated in urothelial cell carcinoma (UCC) tumors with LOH on 9q as compared to the tumors showing retention. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_17Q11_Q21_AMPLICON View Gene Set 2.252e-07 129 0.0002694 2 Genes within amplicon 17q11-q21 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN View Gene Set 1.873e-06 135 0.00112 3 Genes whose expression profile is specific to Cluster IIa of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad KOYAMA_SEMA3B_TARGETS_DN View Gene Set 1.595e-06 286 0.00112 3 Genes down-regulated in NCI-H1299 cells (large cell neuroendocrine carcinoma) stably expressing SEMA3B [Gene ID=7869]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 4.237e-06 399 0.002027 5 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_1Q21_AMPLICON View Gene Set 8.274e-06 37 0.002827 6 Genes within amplicon 1q21 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4 View Gene Set 7.452e-06 189 0.002827 6 Cluster 4 of method A: up-regulation of these genes in patients with non-small cell lung cancer (NSCLC) predicts good survival outcome. www.broad.mit.e...
Broad PROVENZANI_METASTASIS_UP View Gene Set 1.068e-05 188 0.003194 8 Genes up-regulated in polysomal and total RNA samples from SW480 cells (primary colorectal carcinoma CRC) compared to the SW620 cells (lymph node metastasis from the same individual). www.broad.mit.e...
Broad NATSUME_RESPONSE_TO_INTERFERON_BETA_DN View Gene Set 1.349e-05 48 0.003585 9 Genes down-regulated in T98 cells (glioma) 48 h after treatment with interferon beta. www.broad.mit.e...
Broad YAGI_AML_FAB_MARKERS View Gene Set 2.295e-05 189 0.004575 10 Genes specifically expressed in FAB subtypes M2 M4 M5 and M7 of pediatric AML (acute myeloid leukemia). www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 2.064e-05 268 0.004575 10 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN View Gene Set 2.117e-05 218 0.004575 10 Down-regulated genes whose expression correlates with copy number losses in pancreatic adenocarcinoma cell lines and primary tumor specimens. www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER View Gene Set 2.813e-05 167 0.005176 13 Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines. www.broad.mit.e...
Broad SINGH_NFE2L2_TARGETS View Gene Set 3.511e-05 14 0.005999 14 Selected electrophile and drug detoxication genes down-regulated in A549 and H460 cells (lung cancer) upon knockdown of NFE2L2 [Gene ID=4780] by RNAi. www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_DN View Gene Set 4.713e-05 446 0.007515 15 Genes down-regulated in prostate cancer samples. www.broad.mit.e...
Broad GRATIAS_RETINOBLASTOMA_16Q24 View Gene Set 6e-05 17 0.00897 16 Genes from 16q24 region up-regulated in retinoblastoma tumors with 16q24 LOH (loss of heterozygocity) compared to those without the LOH. www.broad.mit.e...
Broad YAGI_AML_WITH_11Q23_REARRANGED View Gene Set 6.908e-05 336 0.00972 17 Genes specifically expressed in samples from patients with pediatric acute myeloid leukemia (AML) bearing 11q23 rearrangements. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 8.413e-05 825 0.01059 18 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 8.101e-05 402 0.01059 18 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_DN View Gene Set 8.945e-05 235 0.0107 20 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad PARENT_MTOR_SIGNALING_UP View Gene Set 0.0001069 541 0.01218 21 Genes up-regulated in HepaRG cells (liver cancer) expressing constituvely active form of MTOR [Gene ID=2475]. www.broad.mit.e...
Broad DOUGLAS_BMI1_TARGETS_DN View Gene Set 0.0001153 270 0.01254 22 Genes down-regulated in A4573 cells (Ewing's sarcoma ESFT) after knockdown of BMI1 [Gene ID=648] by RNAi. www.broad.mit.e...
Broad BASSO_HAIRY_CELL_LEUKEMIA_DN View Gene Set 0.0001428 78 0.01485 23 Genes down-regulated in hairy cell leukemia (HCL) compared with normal and other neoplastic B cell populations. www.broad.mit.e...
Broad BREDEMEYER_RAG_SIGNALING_VIA_ATM_NOT_VIA_NFKB_UP View Gene Set 0.000155 44 0.01545 24 Genes up-regulated in pre B lymphocyte after induction of physiological DNA double-strand breaks (DSB) by RAG2 [Gene ID=5897]; the changes depend on ATM [Gene ID=472] but not NFKB signaling. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 0.0001925 406 0.01842 25 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad IIZUKA_LIVER_CANCER_PROGRESSION_L1_G1_UP View Gene Set 0.0002043 13 0.0188 26 Genes up-regulated during transition from L1 (non-tumor infected with HCV) to G1 (well differentiated tumor infected with HCV) in the development of hepatocellular carcinoma. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_DN View Gene Set 0.0002172 205 0.01924 27 Genes down-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad HOLLMAN_APOPTOSIS_VIA_CD40_DN View Gene Set 0.0002426 255 0.02026 28 Genes down-regulated in DLBCL (diffuse large B-cell lymphoma) cell lines sensitive to stimulation of CD40 [Gene ID=958] relative to the resistant ones. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_UP View Gene Set 0.0002456 131 0.02026 28 Genes up-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad VERHAAK_AML_WITH_NPM1_MUTATED_DN View Gene Set 0.0002883 241 0.02299 30 Genes down-regulated in acute myeloid leukemia (AML) patients with mutated NPM1 [Gene ID=4869]. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 0.0002991 532 0.02308 31 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 0.0003444 353 0.02496 32 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad ROSS_ACUTE_MYELOID_LEUKEMIA_CBF View Gene Set 0.0003373 79 0.02496 32 Top 100 probe sets for core-binding factor (CBF) acute myeloid leukemia (AML): contains CBFB MYH11 [Gene ID=865 4629] or AML1 ETO [Gene ID=861 862] fusions. www.broad.mit.e...
Broad KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP View Gene Set 0.0003751 126 0.02639 34 Genes up-regulated in glioma cell lines treated with both decitabine [PubChem=451668] and TSA [PubChem=5562]. www.broad.mit.e...
Broad STARK_HYPPOCAMPUS_22Q11_DELETION_DN View Gene Set 0.0004132 19 0.02824 35 Genes down-regulated in hyppocampus of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP View Gene Set 0.0004598 228 0.03055 36 Genes up-regulated in SH-SY5Y cells (neuroblastoma) after treatment with epoxomicin [PubChem=3035402] a protease inhibitor causing apoptosis. www.broad.mit.e...
Broad MCGARVEY_SILENCED_BY_METHYLATION_IN_COLON_CANCER View Gene Set 0.0005005 42 0.03236 37 Genes silenced in HCT116 cells (colon cancer) by methylation of CpG islands in their promoters. www.broad.mit.e...
Broad MELLMAN_TUT1_TARGETS_DN View Gene Set 0.0005163 47 0.0325 38 Genes down-regulated in HEK293 cells (embryo kidney) after knockdown of TUT1 [Gene ID=64852] by RNAi. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_UP View Gene Set 0.000535 109 0.03282 39 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 0.0005616 171 0.03358 40 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad VANHARANTA_UTERINE_FIBROID_DN View Gene Set 0.0006265 63 0.03655 41 Genes down-regulated in uterine fibroids vs normal myometrium samples. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 0.0007862 140 0.04477 42 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad ASTON_MAJOR_DEPRESSIVE_DISORDER_UP View Gene Set 0.0008104 46 0.04508 43 Genes up-regulated in the temporal cortex samples from patients with major depressive disorder. www.broad.mit.e...
Broad SCHLOSSER_SERUM_RESPONSE_DN View Gene Set 0.0008619 666 0.04685 44 Cluster 4: genes down-regulated in B493-6 cells (B lymphocytes) upon serum stimulation but not affected by MYC [Gene ID=4609]. www.broad.mit.e...
Broad GOLDRATH_IMMUNE_MEMORY View Gene Set 0.0008861 57 0.0471 45 'Memory genes' expressed uniquely in CD8+ [Gene ID=925] memory T lymphocytes (compared with effector or na??ve cells) www.broad.mit.e...
Broad KORKOLA_SEMINOMA_UP View Gene Set 0.0009808 39 0.04794 46 Genes from the 12p region that were up-regulated in seminoma tumors compared to normal testis. www.broad.mit.e...
Broad WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN View Gene Set 0.001022 179 0.04794 46 Genes down-regulated in mucinous ovarian carcinoma tumors of low malignant potential (LMP) compared to normal ovarian surface epithelium tissue. www.broad.mit.e...
Broad AMUNDSON_RESPONSE_TO_ARSENITE View Gene Set 0.0009273 180 0.04794 46 Genes discriminating responses to sodium arsenite [PubChem ID=26435] from other stresses. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_12Q13_Q21_AMPLICON View Gene Set 0.001017 44 0.04794 46 Genes within amplicon 12q13-q21 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad JISON_SICKLE_CELL_DISEASE_UP View Gene Set 0.0009973 175 0.04794 46 Genes up-regulated in peripheral blood mononuclear cells (PBMC) from sickle cell disease patients compared to those from healthy subjects. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C8 View Gene Set 0.001018 71 0.04794 46 Cluster 8: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_CD1_VS_CD2_UP View Gene Set 0.001055 64 0.04851 52 Genes up-regulated in CD-1 compared to CD-2 cluster of multiple myeloma samples. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_ALLOGRAFT_REJECTION View Gene Set 6.368e-05 38 0.01184 1 Allograft rejection www.broad.mit.e...
Broad KEGG_VIRAL_MYOCARDITIS View Gene Set 0.000248 73 0.02307 2 Viral myocarditis www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_12 View Gene Set 2.453e-05 346 0.003866 1 Genes in module_12 www.broad.mit.e...
Broad module_19 View Gene Set 2.85e-05 306 0.003866 1 Genes in module_19 www.broad.mit.e...
Broad module_143 View Gene Set 1.782e-05 14 0.003866 1 Genes in module_143 www.broad.mit.e...
Broad module_293 View Gene Set 3.406e-05 12 0.003866 1 Genes in module_293 www.broad.mit.e...
Broad module_471 View Gene Set 0.0001044 9 0.007902 5 Genes in module_471 www.broad.mit.e...
Broad module_560 View Gene Set 9.087e-05 11 0.007902 5 Genes in module_560 www.broad.mit.e...
Broad module_144 View Gene Set 0.0001364 8 0.008844 7 Genes in module_144 www.broad.mit.e...
Broad module_1 View Gene Set 0.0001972 355 0.009596 8 Genes in module_1 www.broad.mit.e...
Broad module_11 View Gene Set 0.0002036 520 0.009596 8 Genes in module_11 www.broad.mit.e...
Broad module_66 View Gene Set 0.0002114 530 0.009596 8 Genes in module_66 www.broad.mit.e...
Broad module_2 View Gene Set 0.0002882 373 0.01134 11 Genes in module_2 www.broad.mit.e...
Broad module_100 View Gene Set 0.0002997 523 0.01134 11 Genes in module_100 www.broad.mit.e...
Broad module_428 View Gene Set 0.0003752 8 0.0131 13 Genes in module_428 www.broad.mit.e...
Broad module_137 View Gene Set 0.0005617 525 0.01821 14 Genes in module_137 www.broad.mit.e...
Broad module_528 View Gene Set 0.0007142 10 0.02162 15 Genes in module_528 www.broad.mit.e...
Broad module_116 View Gene Set 0.0008421 29 0.02389 16 Genes in module_116 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad EXTRACELLULAR_STRUCTURE_ORGANIZATION_AND_BIOGENESIS View Gene Set 3.164e-05 32 0.0261 1 Genes annotated by the GO term GO:0043062. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane and also covers the host cell environment outside an intracellular parasite. www.broad.mit.e...
Broad SYNAPTOGENESIS View Gene Set 9.863e-05 18 0.03264 2 Genes annotated by the GO term GO:0007416. The biosynthesis of a synapse. www.broad.mit.e...
Broad SYNAPSE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001187 23 0.03264 2 Genes annotated by the GO term GO:0050808. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a synapse the junction between a neuron and a target (neuron muscle or secretory cell). www.broad.mit.e...
Broad DNA_REPLICATION View Gene Set 0.0002263 101 0.04667 4 Genes annotated by the GO term GO:0006260. The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15164053 View Gene Set 1.821e-18 374 4.566e-15 1 DNA sequence and analysis of human chromosome 9. www.ncbi.nlm.ni...
PMID 8084338 View Gene Set 1.367e-07 21 0.0001713 2 HIV-1 gp41 binding proteins and antibodies to gp41 could inhibit enhancement of human Raji cell MHC class I and II expression by gp41. www.ncbi.nlm.ni...
PMID 12427289 View Gene Set 4.062e-07 20 0.0003394 3 HIV-1 gp120 modulates the immunological function and expression of accessory and co-stimulatory molecules of monocyte-derived dendritic cells. www.ncbi.nlm.ni...
PMID 12743021 View Gene Set 5.104e-06 18 0.003199 4 Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. www.ncbi.nlm.ni...
PMID 10380929 View Gene Set 1.714e-05 72 0.004816 5 A striking organization of a large family of human neural cadherin-like cell adhesion genes. www.ncbi.nlm.ni...
PMID 10729169 View Gene Set 3.65e-05 15 0.004816 5 Efficient incorporation of HLA class II onto human immunodeficiency virus type 1 requires envelope glycoprotein packaging. www.ncbi.nlm.ni...
PMID 11230163 View Gene Set 1.611e-05 68 0.004816 5 Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. www.ncbi.nlm.ni...
PMID 11322959 View Gene Set 1.763e-05 20 0.004816 5 The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation despite the difference in gene number. www.ncbi.nlm.ni...
PMID 12853948 View Gene Set 3.648e-05 419 0.004816 5 The DNA sequence of human chromosome 7. www.ncbi.nlm.ni...
PMID 12956878 View Gene Set 2.601e-05 10 0.004816 5 Roles of HLA-B HLA-C and HLA-DPA1 incompatibilities in the outcome of unrelated stem-cell transplantation. www.ncbi.nlm.ni...
PMID 15164054 View Gene Set 1.934e-05 346 0.004816 5 The DNA sequence and comparative analysis of human chromosome 10. www.ncbi.nlm.ni...
PMID 15570572 View Gene Set 2.881e-05 14 0.004816 5 Automated immobilized metal affinity chromatography/nano-liquid chromatography/electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites. www.ncbi.nlm.ni...
PMID 16307923 View Gene Set 1.154e-05 23 0.004816 5 Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. www.ncbi.nlm.ni...
PMID 2286373 View Gene Set 2.788e-05 12 0.004816 5 Human metallothionein genes: structure of the functional locus at 16q13. www.ncbi.nlm.ni...
PMID 3489470 View Gene Set 3.65e-05 15 0.004816 5 AIDS and related syndromes as a viral-induced autoimmune disease of the immune system: an anti-MHC II disorder. Therapeutic implications. www.ncbi.nlm.ni...
PMID 7602119 View Gene Set 3.65e-05 15 0.004816 5 Endocytosis of endogenously synthesized HIV-1 envelope protein. Mechanism and role in processing for association with class II MHC. www.ncbi.nlm.ni...
PMID 8376762 View Gene Set 3.65e-05 15 0.004816 5 HIV-1 envelope protein is expressed on the surface of infected cells before its processing and presentation to class II-restricted T lymphocytes. www.ncbi.nlm.ni...
PMID 9079699 View Gene Set 3.65e-05 15 0.004816 5 The enhanced immune response to the HIV gp160/LAMP chimeric gene product targeted to the lysosome membrane protein trafficking pathway. www.ncbi.nlm.ni...
PMID 9223324 View Gene Set 1.58e-05 16 0.004816 5 Tat protein induces self-perpetuating permissivity for productive HIV-1 infection. www.ncbi.nlm.ni...
PMID 14574404 View Gene Set 4.154e-05 615 0.004959 20 The DNA sequence and analysis of human chromosome 6. www.ncbi.nlm.ni...
PMID 16385451 View Gene Set 3.98e-05 418 0.004959 20 A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. www.ncbi.nlm.ni...
PMID 12231349 View Gene Set 8.189e-05 11 0.008936 22 Protocadherins. www.ncbi.nlm.ni...
PMID 16713563 View Gene Set 8.198e-05 19 0.008936 22 Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. www.ncbi.nlm.ni...
PMID 11318611 View Gene Set 0.0001072 15 0.009801 24 Cloning and characterization of 13 novel transcripts and the human RGS8 gene from the 1q25 region encompassing the hereditary prostate cancer (HPC1) locus. www.ncbi.nlm.ni...
PMID 12690205 View Gene Set 9.992e-05 528 0.009801 24 Human chromosome 7: DNA sequence and biology. www.ncbi.nlm.ni...
PMID 16283522 View Gene Set 0.0001095 18 0.009801 24 Inhibition of core histones acetylation by carcinogenic nickel(II). www.ncbi.nlm.ni...
PMID 1869305 View Gene Set 0.0001059 14 0.009801 24 Interaction of CD4 with HLA class II antigens and HIV gp120. www.ncbi.nlm.ni...
PMID 7512597 View Gene Set 0.0001059 14 0.009801 24 HLA class II antigens and the HIV envelope glycoprotein gp120 bind to the same face of CD4. www.ncbi.nlm.ni...
PMID 1978941 View Gene Set 0.0001222 16 0.009884 29 Identification and structural analysis of residues in the V1 region of CD4 involved in interaction with human immunodeficiency virus envelope glycoprotein gp120 and class II major histocompatibility complex molecules. www.ncbi.nlm.ni...
PMID 2543930 View Gene Set 0.0001222 16 0.009884 29 Identification of human CD4 residues affecting class II MHC versus HIV-1 gp120 binding. www.ncbi.nlm.ni...
PMID 2846691 View Gene Set 0.0001222 16 0.009884 29 Inhibition of CD4+ T cell function by the HIV envelope protein gp120. www.ncbi.nlm.ni...
PMID 19115949 View Gene Set 0.0001928 18 0.01487 32 Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). www.ncbi.nlm.ni...
PMID 19851445 View Gene Set 0.0001957 176 0.01487 32 High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. www.ncbi.nlm.ni...
PMID 12757711 View Gene Set 0.0002077 18 0.01531 34 Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase. www.ncbi.nlm.ni...
PMID 10661406 View Gene Set 0.0002615 18 0.01821 35 Tat competes with CIITA for the binding to P-TEFb and blocks the expression of MHC class II genes in HIV infection. www.ncbi.nlm.ni...
PMID 11118314 View Gene Set 0.0002615 18 0.01821 35 Reciprocal modulation of transcriptional activities between HIV-1 Tat and MHC class II transactivator CIITA. www.ncbi.nlm.ni...
PMID 7541827 View Gene Set 0.0003134 20 0.02124 37 HIV gp120 inhibits T cell activation by interfering with expression of costimulatory molecules CD40 ligand and CD80 (B71). www.ncbi.nlm.ni...
PMID 1967269 View Gene Set 0.0003358 15 0.02158 38 HIV-gp120 can block CD4-class II MHC-mediated adhesion. www.ncbi.nlm.ni...
PMID 8168144 View Gene Set 0.0003358 15 0.02158 38 Envelope glycoproteins of HIV-1 interfere with T-cell-dependent B cell differentiation: role of CD4-MHC class II interaction in the effector phase of T cell help. www.ncbi.nlm.ni...
PMID 16319397 View Gene Set 0.0003814 20 0.0239 40 Characterization of histone H2A and H2B variants and their post-translational modifications by mass spectrometry. www.ncbi.nlm.ni...
PMID 12621583 View Gene Set 0.0005699 19 0.03485 41 Refinement of a 400-kb critical region allows genotypic differentiation between isolated lissencephaly Miller-Dieker syndrome and other phenotypes secondary to deletions of 17p13.3. www.ncbi.nlm.ni...
PMID 1693624 View Gene Set 0.0006231 10 0.03719 42 Integrin recognition of different cell-binding fragments of laminin (P1 E3 E8) and evidence that alpha 6 beta 1 but not alpha 6 beta 4 functions as a major receptor for fragment E8. www.ncbi.nlm.ni...
PMID 14627618 View Gene Set 0.000647 22 0.03772 43 Smooth muscle contraction and relaxation. www.ncbi.nlm.ni...
PMID 15386022 View Gene Set 0.0006978 16 0.03976 44 Role of histone H2A ubiquitination in Polycomb silencing. www.ncbi.nlm.ni...
PMID 20200426 View Gene Set 0.0007205 30 0.04014 45 Glutathione pathway genetic polymorphisms and lung cancer survival after platinum-based chemotherapy. www.ncbi.nlm.ni...
PMID 11751963 View Gene Set 0.0008061 21 0.043 46 Native HIV-1 Tat protein targets monocyte-derived dendritic cells and enhances their maturation function and antigen-specific T cell responses. www.ncbi.nlm.ni...
PMID 12643545 View Gene Set 0.000798 29 0.043 46 Proteomic analysis of early melanosomes: identification of novel melanosomal proteins. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr1_147.5-152.5Mb View Gene Set 1.212e-12 109 1.351e-09 1 Genomic tile: chr1 ; 147500001-152500001 Mb genome.ucsc.edu...
Null chr1_145-150Mb View Gene Set 1.733e-10 66 9.652e-08 2 Genomic tile: chr1 ; 145000001-150000001 Mb genome.ucsc.edu...
Null chr9_32.5-37.5Mb View Gene Set 1.138e-09 67 4.226e-07 3 Genomic tile: chr9 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr14_47.5-52.5Mb View Gene Set 6.735e-09 33 1.876e-06 4 Genomic tile: chr14 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr14_45-50Mb View Gene Set 9.257e-09 20 2.062e-06 5 Genomic tile: chr14 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr12_52.5-57.5Mb View Gene Set 1.297e-08 86 2.409e-06 6 Genomic tile: chr12 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr7_97.5-102.5Mb View Gene Set 6.27e-08 63 9.978e-06 7 Genomic tile: chr7 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr9_35-40Mb View Gene Set 7.419e-08 42 1.033e-05 8 Genomic tile: chr9 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr14_30-35Mb View Gene Set 1.047e-07 19 1.295e-05 9 Genomic tile: chr14 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr12_50-55Mb View Gene Set 1.988e-07 87 2.215e-05 10 Genomic tile: chr12 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr12_92.5-97.5Mb View Gene Set 2.844e-07 22 2.88e-05 11 Genomic tile: chr12 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr18_30-35Mb View Gene Set 4.192e-07 14 3.891e-05 12 Genomic tile: chr18 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr18_27.5-32.5Mb View Gene Set 4.713e-07 17 4.039e-05 13 Genomic tile: chr18 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr17_25-30Mb View Gene Set 5.085e-07 52 4.046e-05 14 Genomic tile: chr17 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr14_32.5-37.5Mb View Gene Set 5.717e-07 24 4.246e-05 15 Genomic tile: chr14 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr4_0-5Mb View Gene Set 7.379e-07 45 4.89e-05 16 Genomic tile: chr4 ; 1-5000001 Mb genome.ucsc.edu...
Null chr9_72.5-77.5Mb View Gene Set 7.462e-07 15 4.89e-05 16 Genomic tile: chr9 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr17_2.5-7.5Mb View Gene Set 9.506e-07 77 5.883e-05 18 Genomic tile: chr17 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr19_42.5-47.5Mb View Gene Set 1.011e-06 95 5.929e-05 19 Genomic tile: chr19 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr10_102.5-107.5Mb View Gene Set 1.113e-06 45 6.201e-05 20 Genomic tile: chr10 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr17_5-10Mb View Gene Set 1.474e-06 90 7.783e-05 21 Genomic tile: chr17 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr3_137.5-142.5Mb View Gene Set 1.537e-06 23 7.783e-05 21 Genomic tile: chr3 ; 137500001-142500001 Mb genome.ucsc.edu...
Null chr10_100-105Mb View Gene Set 2.522e-06 58 0.0001222 23 Genomic tile: chr10 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr18_42.5-47.5Mb View Gene Set 2.791e-06 19 0.0001295 24 Genomic tile: chr18 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr15_55-60Mb View Gene Set 4.464e-06 20 0.0001989 25 Genomic tile: chr15 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr19_45-50Mb View Gene Set 4.976e-06 81 0.0002132 26 Genomic tile: chr19 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr15_47.5-52.5Mb View Gene Set 6.91e-06 26 0.0002851 27 Genomic tile: chr15 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr8_30-35Mb View Gene Set 7.571e-06 14 0.0003012 28 Genomic tile: chr8 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr4_2.5-7.5Mb View Gene Set 8.017e-06 34 0.0003023 29 Genomic tile: chr4 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr9_117.5-122.5Mb View Gene Set 8.14e-06 31 0.0003023 29 Genomic tile: chr9 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr4_5-10Mb View Gene Set 9.764e-06 28 0.0003509 31 Genomic tile: chr4 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr17_22.5-27.5Mb View Gene Set 1.12e-05 27 0.0003897 32 Genomic tile: chr17 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr14_27.5-32.5Mb View Gene Set 1.256e-05 12 0.0004123 33 Genomic tile: chr14 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr1_177.5-182.5Mb View Gene Set 1.258e-05 27 0.0004123 33 Genomic tile: chr1 ; 177500001-182500001 Mb genome.ucsc.edu...
Null chr19_0-5Mb View Gene Set 1.298e-05 105 0.000413 35 Genomic tile: chr19 ; 1-5000001 Mb genome.ucsc.edu...
Null chr1_150-155Mb View Gene Set 1.353e-05 106 0.0004185 36 Genomic tile: chr1 ; 150000001-155000001 Mb genome.ucsc.edu...
Null chr15_45-50Mb View Gene Set 1.874e-05 28 0.0005495 37 Genomic tile: chr15 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr16_55-60Mb View Gene Set 1.837e-05 46 0.0005495 37 Genomic tile: chr16 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr17_37.5-42.5Mb View Gene Set 2.292e-05 90 0.0006548 39 Genomic tile: chr17 ; 37500001-42500001 Mb genome.ucsc.edu...
Null chr12_90-95Mb View Gene Set 2.712e-05 28 0.0007553 40 Genomic tile: chr12 ; 90000001-95000001 Mb genome.ucsc.edu...
Null chr15_62.5-67.5Mb View Gene Set 3.31e-05 38 0.0008575 41 Genomic tile: chr15 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr16_52.5-57.5Mb View Gene Set 3.21e-05 38 0.0008575 41 Genomic tile: chr16 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr9_70-75Mb View Gene Set 3.253e-05 17 0.0008575 41 Genomic tile: chr9 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr9_75-80Mb View Gene Set 4.074e-05 7 0.001032 44 Genomic tile: chr9 ; 75000001-80000001 Mb genome.ucsc.edu...
Null chr1_142.5-147.5Mb View Gene Set 4.351e-05 44 0.001077 45 Genomic tile: chr1 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr17_0-5Mb View Gene Set 4.527e-05 65 0.001096 46 Genomic tile: chr17 ; 1-5000001 Mb genome.ucsc.edu...
Null chr7_100-105Mb View Gene Set 6.401e-05 33 0.001517 47 Genomic tile: chr7 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr10_105-110Mb View Gene Set 7.936e-05 11 0.001835 48 Genomic tile: chr10 ; 105000001-110000001 Mb genome.ucsc.edu...
Null chr15_60-65Mb View Gene Set 8.072e-05 43 0.001835 48 Genomic tile: chr15 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr12_47.5-52.5Mb View Gene Set 8.434e-05 84 0.001836 50 Genomic tile: chr12 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr3_135-140Mb View Gene Set 8.57e-05 20 0.001836 50 Genomic tile: chr3 ; 135000001-140000001 Mb genome.ucsc.edu...
Null chr3_140-145Mb View Gene Set 8.418e-05 23 0.001836 50 Genomic tile: chr3 ; 140000001-145000001 Mb genome.ucsc.edu...
Null chr15_57.5-62.5Mb View Gene Set 0.0001053 25 0.002214 53 Genomic tile: chr15 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr12_45-50Mb View Gene Set 0.0001129 55 0.002287 54 Genomic tile: chr12 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr5_130-135Mb View Gene Set 0.0001119 38 0.002287 54 Genomic tile: chr5 ; 130000001-135000001 Mb genome.ucsc.edu...
Null chr9_95-100Mb View Gene Set 0.0001589 33 0.003162 56 Genomic tile: chr9 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr17_27.5-32.5Mb View Gene Set 0.0001693 37 0.003309 57 Genomic tile: chr17 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr9_125-130Mb View Gene Set 0.0001801 72 0.003458 58 Genomic tile: chr9 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr22_15-20Mb View Gene Set 0.0001939 46 0.003661 59 Genomic tile: chr22 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr15_70-75Mb View Gene Set 0.0002918 55 0.005418 60 Genomic tile: chr15 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr8_15-20Mb View Gene Set 0.0003103 20 0.005668 61 Genomic tile: chr8 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr15_42.5-47.5Mb View Gene Set 0.0003477 24 0.006248 62 Genomic tile: chr15 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr3_142.5-147.5Mb View Gene Set 0.0003757 16 0.006643 63 Genomic tile: chr3 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr1_230-235Mb View Gene Set 0.00039 23 0.006788 64 Genomic tile: chr1 ; 230000001-235000001 Mb genome.ucsc.edu...
Null chr12_55-60Mb View Gene Set 0.0004348 48 0.007452 65 Genomic tile: chr12 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr18_15-20Mb View Gene Set 0.0004563 16 0.007702 66 Genomic tile: chr18 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr9_115-120Mb View Gene Set 0.0004685 20 0.007789 67 Genomic tile: chr9 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr7_95-100Mb View Gene Set 0.0004879 51 0.007994 68 Genomic tile: chr7 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr7_125-130Mb View Gene Set 0.0005353 32 0.008642 69 Genomic tile: chr7 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr9_132.5-137.5Mb View Gene Set 0.0005503 53 0.008757 70 Genomic tile: chr9 ; 132500001-137500001 Mb genome.ucsc.edu...
Null chr1_175-180Mb View Gene Set 0.0005958 24 0.009348 71 Genomic tile: chr1 ; 175000001-180000001 Mb genome.ucsc.edu...
Null chr14_25-30Mb View Gene Set 0.0006056 7 0.00937 72 Genomic tile: chr14 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr7_75-80Mb View Gene Set 0.0006885 21 0.01051 73 Genomic tile: chr7 ; 75000001-80000001 Mb genome.ucsc.edu...
Null chr8_52.5-57.5Mb View Gene Set 0.000703 19 0.01056 74 Genomic tile: chr8 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr9_122.5-127.5Mb View Gene Set 0.0007193 67 0.01056 74 Genomic tile: chr9 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chr9_135-140Mb View Gene Set 0.0007203 30 0.01056 74 Genomic tile: chr9 ; 135000001-140000001 Mb genome.ucsc.edu...
Null chr9_30-35Mb View Gene Set 0.00073 35 0.01056 77 Genomic tile: chr9 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr1_190-195Mb View Gene Set 0.0007834 11 0.01119 78 Genomic tile: chr1 ; 190000001-195000001 Mb genome.ucsc.edu...
Null chr19_40-45Mb View Gene Set 0.000856 98 0.01177 79 Genomic tile: chr19 ; 40000001-45000001 Mb genome.ucsc.edu...
Null chr5_30-35Mb View Gene Set 0.0008532 18 0.01177 79 Genomic tile: chr5 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr8_12.5-17.5Mb View Gene Set 0.0008483 13 0.01177 79 Genomic tile: chr8 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr16_45-50Mb View Gene Set 0.0008985 14 0.01192 82 Genomic tile: chr16 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr16_82.5-87.5Mb View Gene Set 0.0008774 26 0.01192 82 Genomic tile: chr16 ; 82500001-87500001 Mb genome.ucsc.edu...
Null chr6_32.5-37.5Mb View Gene Set 0.0008885 76 0.01192 82 Genomic tile: chr6 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr14_15-20Mb View Gene Set 0.0009316 20 0.01221 85 Genomic tile: chr14 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr9_92.5-97.5Mb View Gene Set 0.0009518 34 0.01233 86 Genomic tile: chr9 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr4_25-30Mb View Gene Set 0.0009669 5 0.01238 87 Genomic tile: chr4 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr9_87.5-92.5Mb View Gene Set 0.001116 31 0.01413 88 Genomic tile: chr9 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chr12_42.5-47.5Mb View Gene Set 0.00116 22 0.01452 89 Genomic tile: chr12 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr16_65-70Mb View Gene Set 0.00121 70 0.01498 90 Genomic tile: chr16 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr4_22.5-27.5Mb View Gene Set 0.001327 12 0.01624 91 Genomic tile: chr4 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr17_7.5-12.5Mb View Gene Set 0.001452 53 0.01739 92 Genomic tile: chr17 ; 7500001-12500001 Mb genome.ucsc.edu...
Null chr1_140-145Mb View Gene Set 0.001438 28 0.01739 92 Genomic tile: chr1 ; 140000001-145000001 Mb genome.ucsc.edu...
Null chr10_115-120Mb View Gene Set 0.001522 23 0.01767 94 Genomic tile: chr10 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr17_35-40Mb View Gene Set 0.001495 55 0.01767 94 Genomic tile: chr17 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr7_72.5-77.5Mb View Gene Set 0.001518 22 0.01767 94 Genomic tile: chr7 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr10_97.5-102.5Mb View Gene Set 0.001541 42 0.01769 97 Genomic tile: chr10 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr15_52.5-57.5Mb View Gene Set 0.001557 23 0.01769 97 Genomic tile: chr15 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr5_137.5-142.5Mb View Gene Set 0.001683 58 0.01894 99 Genomic tile: chr5 ; 137500001-142500001 Mb genome.ucsc.edu...
Null chr18_45-50Mb View Gene Set 0.001885 13 0.021 100 Genomic tile: chr18 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr9_102.5-107.5Mb View Gene Set 0.002104 16 0.02298 101 Genomic tile: chr9 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr9_17.5-22.5Mb View Gene Set 0.002094 11 0.02298 101 Genomic tile: chr9 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr12_62.5-67.5Mb View Gene Set 0.002126 21 0.023 103 Genomic tile: chr12 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr16_47.5-52.5Mb View Gene Set 0.002245 14 0.02404 104 Genomic tile: chr16 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr6_35-40Mb View Gene Set 0.002699 41 0.02863 105 Genomic tile: chr6 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr7_115-120Mb View Gene Set 0.002877 14 0.03024 106 Genomic tile: chr7 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr15_65-70Mb View Gene Set 0.002996 22 0.03074 107 Genomic tile: chr15 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr9_0-5Mb View Gene Set 0.003034 22 0.03074 107 Genomic tile: chr9 ; 1-5000001 Mb genome.ucsc.edu...
Null chr9_80-85Mb View Gene Set 0.003035 12 0.03074 107 Genomic tile: chr9 ; 80000001-85000001 Mb genome.ucsc.edu...
Null chr9_90-95Mb View Gene Set 0.003004 38 0.03074 107 Genomic tile: chr9 ; 90000001-95000001 Mb genome.ucsc.edu...
Null chr12_35-40Mb View Gene Set 0.003203 5 0.03215 111 Genomic tile: chr12 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr16_42.5-47.5Mb View Gene Set 0.003297 8 0.03251 112 Genomic tile: chr16 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr1_180-185Mb View Gene Set 0.003271 24 0.03251 112 Genomic tile: chr1 ; 180000001-185000001 Mb genome.ucsc.edu...
Null chr12_37.5-42.5Mb View Gene Set 0.003436 12 0.03328 114 Genomic tile: chr12 ; 37500001-42500001 Mb genome.ucsc.edu...
Null chr16_30-35Mb View Gene Set 0.003417 46 0.03328 114 Genomic tile: chr16 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr15_50-55Mb View Gene Set 0.003511 19 0.03371 116 Genomic tile: chr15 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr6_50-55Mb View Gene Set 0.003876 22 0.03691 117 Genomic tile: chr6 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr15_67.5-72.5Mb View Gene Set 0.003932 32 0.03712 118 Genomic tile: chr15 ; 67500001-72500001 Mb genome.ucsc.edu...
Null chr8_17.5-22.5Mb View Gene Set 0.004021 31 0.03764 119 Genomic tile: chr8 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr8_55-60Mb View Gene Set 0.004121 16 0.03794 120 Genomic tile: chr8 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr9_120-125Mb View Gene Set 0.004106 29 0.03794 120 Genomic tile: chr9 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr3_190-195Mb View Gene Set 0.004361 10 0.0395 122 Genomic tile: chr3 ; 190000001-195000001 Mb genome.ucsc.edu...
Null chr9_105-110Mb View Gene Set 0.004327 20 0.0395 122 Genomic tile: chr9 ; 105000001-110000001 Mb genome.ucsc.edu...
Null chr12_65-70Mb View Gene Set 0.004471 22 0.03985 124 Genomic tile: chr12 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr15_40-45Mb View Gene Set 0.004436 40 0.03985 124 Genomic tile: chr15 ; 40000001-45000001 Mb genome.ucsc.edu...
Null chr16_62.5-67.5Mb View Gene Set 0.004522 39 0.0399 126 Genomic tile: chr16 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr4_112.5-117.5Mb View Gene Set 0.004549 9 0.0399 126 Genomic tile: chr4 ; 112500001-117500001 Mb genome.ucsc.edu...
Null chr10_2.5-7.5Mb View Gene Set 0.004592 23 0.03996 128 Genomic tile: chr10 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr5_70-75Mb View Gene Set 0.004876 20 0.04178 129 Genomic tile: chr5 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr5_72.5-77.5Mb View Gene Set 0.004865 25 0.04178 129 Genomic tile: chr5 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr1_62.5-67.5Mb View Gene Set 0.004936 23 0.04198 131 Genomic tile: chr1 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr18_17.5-22.5Mb View Gene Set 0.005062 20 0.04272 132 Genomic tile: chr18 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr16_27.5-32.5Mb View Gene Set 0.00518 76 0.04339 133 Genomic tile: chr16 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr1_20-25Mb View Gene Set 0.005304 46 0.04408 134 Genomic tile: chr1 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr2_22.5-27.5Mb View Gene Set 0.005342 32 0.04408 134 Genomic tile: chr2 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr9_107.5-112.5Mb View Gene Set 0.0057 34 0.04669 136 Genomic tile: chr9 ; 107500001-112500001 Mb genome.ucsc.edu...
Null chr6_15-20Mb View Gene Set 0.005969 12 0.04854 137 Genomic tile: chr6 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr6_85-90Mb View Gene Set 0.006057 15 0.04889 138 Genomic tile: chr6 ; 85000001-90000001 Mb genome.ucsc.edu...
Null chr10_90-95Mb View Gene Set 0.006235 29 0.04997 139 Genomic tile: chr10 ; 90000001-95000001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS00203 View Gene Set 1.415e-06 13 0.00104 1 METALLOTHIONEIN_VRT expasy.org/pros...
Null PS00290 View Gene Set 9.156e-06 86 0.002529 2 IG_MHC expasy.org/pros...
Null PS00357 View Gene Set 1.032e-05 19 0.002529 2 HISTONE_H2B expasy.org/pros...
Null PS00062 View Gene Set 0.0001536 10 0.02823 4 ALDOKETO_REDUCTASE_2 expasy.org/pros...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.ITGB1 View Gene Set 0.000241 11 0.04555 1 Protein-protein-interaction for ITGB1 www.ncbi.nlm.ni...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-133a View Gene Set 0.0002327 324 0.02071 1 microRNA targets for hsa-miR-133a from pictar.targets www.mirbase.org...
Null hsa-miR-222 View Gene Set 0.0002035 218 0.02071 1 microRNA targets for hsa-miR-222 from pictar.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.0008577 337 0.04789 3 microRNA targets for hsa-miR-133b from pictar.targets www.mirbase.org...
Null hsa-miR-221 View Gene Set 0.001188 225 0.04789 3 microRNA targets for hsa-miR-221 from pictar.targets www.mirbase.org...
Null hsa-miR-330 View Gene Set 0.001345 352 0.04789 3 microRNA targets for hsa-miR-330 from pictar.targets www.mirbase.org...

Gene Set Collection: hprdBatch.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL-2 Signaling Pathway View Gene Set 2.287e-06 291 4.346e-05 1 From NetPath for IL-2 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdManual.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL2 View Gene Set 4.026e-06 297 7.649e-05 1 From NetPath for IL2 www.netpath.org...