Results

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Go to: Gene Set Collection: KEGG
Go to: Gene Set Collection: GO
Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.KEGG
Go to: Gene Set Collection: Broad.c3.MIR
Go to: Gene Set Collection: Broad.c3.TFT
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: Broad.c5.BP
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: Enzyme
Go to: Gene Set Collection: ppi.BIND
Go to: Gene Set Collection: miranda.targets
Go to: Gene Set Collection: mirbase.targets
Go to: Gene Set Collection: pictar.targets
Go to: Gene Set Collection: hprdBatch.DOWN
Go to: Gene Set Collection: hprdManual.DOWN

AFA results for: tlineda4VPA

Click on the heading for any column to sort by that column.

Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 04145 View Gene Set 2.436e-06 158 0.0005212 1 Phagosome www.genome.jp/d...
KEGG 05330 View Gene Set 3.955e-05 39 0.004232 2 Allograft rejection www.genome.jp/d...
KEGG 05416 View Gene Set 8.651e-05 74 0.006171 3 Viral myocarditis www.genome.jp/d...
KEGG 04612 View Gene Set 0.0005566 78 0.02978 4 Antigen processing and presentation www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0042611 View Gene Set 2.533e-07 36 0.003384 1 MHC protein complex amigo.geneontol...

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr1q21 View Gene Set 1.344e-12 306 4.382e-10 1 Genes in cytogenetic band chr1q21 www.broad.mit.e...
Broad chr4p16 View Gene Set 1.083e-09 126 1.673e-07 2 Genes in cytogenetic band chr4p16 www.broad.mit.e...
Broad chr15q21 View Gene Set 1.54e-09 95 1.673e-07 2 Genes in cytogenetic band chr15q21 www.broad.mit.e...
Broad chr15q22 View Gene Set 1.233e-08 87 1.005e-06 4 Genes in cytogenetic band chr15q22 www.broad.mit.e...
Broad chr12q13 View Gene Set 2.069e-08 257 1.349e-06 5 Genes in cytogenetic band chr12q13 www.broad.mit.e...
Broad chr17q11 View Gene Set 7.03e-08 118 3.82e-06 6 Genes in cytogenetic band chr17q11 www.broad.mit.e...
Broad chr9q34 View Gene Set 1.849e-07 204 8.61e-06 7 Genes in cytogenetic band chr9q34 www.broad.mit.e...
Broad chr7q22 View Gene Set 3.011e-07 106 1.212e-05 8 Genes in cytogenetic band chr7q22 www.broad.mit.e...
Broad chr17p13 View Gene Set 3.345e-07 225 1.212e-05 8 Genes in cytogenetic band chr17p13 www.broad.mit.e...
Broad chr16q12 View Gene Set 3.944e-07 49 1.286e-05 10 Genes in cytogenetic band chr16q12 www.broad.mit.e...
Broad chr14q13 View Gene Set 2.251e-06 41 6.671e-05 11 Genes in cytogenetic band chr14q13 www.broad.mit.e...
Broad chr10q24 View Gene Set 3.81e-06 97 0.0001035 12 Genes in cytogenetic band chr10q24 www.broad.mit.e...
Broad chr9q21 View Gene Set 8.717e-06 58 0.0002186 13 Genes in cytogenetic band chr9q21 www.broad.mit.e...
Broad chr7q31 View Gene Set 2.796e-05 94 0.0006511 14 Genes in cytogenetic band chr7q31 www.broad.mit.e...
Broad chr5q31 View Gene Set 3.188e-05 207 0.0006929 15 Genes in cytogenetic band chr5q31 www.broad.mit.e...
Broad chr16q22 View Gene Set 4.385e-05 131 0.0008935 16 Genes in cytogenetic band chr16q22 www.broad.mit.e...
Broad chr4p15 View Gene Set 6.128e-05 55 0.001175 17 Genes in cytogenetic band chr4p15 www.broad.mit.e...
Broad chr1p31 View Gene Set 8e-05 106 0.001449 18 Genes in cytogenetic band chr1p31 www.broad.mit.e...
Broad chr9p13 View Gene Set 8.544e-05 79 0.001466 19 Genes in cytogenetic band chr9p13 www.broad.mit.e...
Broad chr12q22 View Gene Set 0.0001234 37 0.001916 20 Genes in cytogenetic band chr12q22 www.broad.mit.e...
Broad chr18q12 View Gene Set 0.0001178 53 0.001916 20 Genes in cytogenetic band chr18q12 www.broad.mit.e...
Broad chr9q31 View Gene Set 0.0001635 64 0.002423 22 Genes in cytogenetic band chr9q31 www.broad.mit.e...
Broad chr12q12 View Gene Set 0.0001814 63 0.002572 23 Genes in cytogenetic band chr12q12 www.broad.mit.e...
Broad chr9q33 View Gene Set 0.0002219 65 0.002767 24 Genes in cytogenetic band chr9q33 www.broad.mit.e...
Broad chr9q22 View Gene Set 0.0002167 105 0.002767 24 Genes in cytogenetic band chr9q22 www.broad.mit.e...
Broad chr14q21 View Gene Set 0.0002292 53 0.002767 24 Genes in cytogenetic band chr14q21 www.broad.mit.e...
Broad chr6p21 View Gene Set 0.0002056 479 0.002767 24 Genes in cytogenetic band chr6p21 www.broad.mit.e...
Broad chr1q25 View Gene Set 0.0002564 90 0.002986 28 Genes in cytogenetic band chr1q25 www.broad.mit.e...
Broad chr2p23 View Gene Set 0.0002664 71 0.002995 29 Genes in cytogenetic band chr2p23 www.broad.mit.e...
Broad chr18q11 View Gene Set 0.0003237 41 0.003518 30 Genes in cytogenetic band chr18q11 www.broad.mit.e...
Broad chr16q13 View Gene Set 0.0004678 45 0.004919 31 Genes in cytogenetic band chr16q13 www.broad.mit.e...
Broad chr7q11 View Gene Set 0.0004878 136 0.004969 32 Genes in cytogenetic band chr7q11 www.broad.mit.e...
Broad chr8p21 View Gene Set 0.0007198 89 0.00711 33 Genes in cytogenetic band chr8p21 www.broad.mit.e...
Broad chr3q22 View Gene Set 0.0008718 47 0.008359 34 Genes in cytogenetic band chr3q22 www.broad.mit.e...
Broad chr10p15 View Gene Set 0.0009148 48 0.008521 35 Genes in cytogenetic band chr10p15 www.broad.mit.e...
Broad chr12q14 View Gene Set 0.0009515 44 0.008617 36 Genes in cytogenetic band chr12q14 www.broad.mit.e...
Broad chr10q25 View Gene Set 0.002517 49 0.02217 37 Genes in cytogenetic band chr10q25 www.broad.mit.e...
Broad chr10q23 View Gene Set 0.002959 103 0.02539 38 Genes in cytogenetic band chr10q23 www.broad.mit.e...
Broad chr6q15 View Gene Set 0.003381 16 0.02826 39 Genes in cytogenetic band chr6q15 www.broad.mit.e...
Broad chr16q21 View Gene Set 0.003964 22 0.0323 40 Genes in cytogenetic band chr16q21 www.broad.mit.e...
Broad chr9q12 View Gene Set 0.005029 44 0.03998 41 Genes in cytogenetic band chr9q12 www.broad.mit.e...
Broad chr22q11 View Gene Set 0.005788 298 0.04388 42 Genes in cytogenetic band chr22q11 www.broad.mit.e...
Broad chr9p24 View Gene Set 0.005721 45 0.04388 42 Genes in cytogenetic band chr9p24 www.broad.mit.e...
Broad chr12p13 View Gene Set 0.00663 213 0.04912 44 Genes in cytogenetic band chr12p13 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad LINDGREN_BLADDER_CANCER_WITH_LOH_IN_CHR9Q View Gene Set 1.734e-14 106 4.148e-11 1 Genes down-regulated in urothelial cell carcinoma (UCC) tumors with LOH on 9q as compared to the tumors showing retention. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_17Q11_Q21_AMPLICON View Gene Set 1.339e-07 129 0.0001601 2 Genes within amplicon 17q11-q21 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN View Gene Set 2.048e-07 135 0.0001633 3 Genes whose expression profile is specific to Cluster IIa of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_DN View Gene Set 2.243e-06 825 0.0008681 4 Genes down-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad KOYAMA_SEMA3B_TARGETS_DN View Gene Set 2.492e-06 286 0.0008681 4 Genes down-regulated in NCI-H1299 cells (large cell neuroendocrine carcinoma) stably expressing SEMA3B [Gene ID=7869]. www.broad.mit.e...
Broad REN_ALVEOLAR_RHABDOMYOSARCOMA_DN View Gene Set 2.409e-06 402 0.0008681 4 Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [Gene ID=5077 2308] fusion. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 2.54e-06 399 0.0008681 4 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 3.477e-06 268 0.00104 8 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4 View Gene Set 4.03e-06 189 0.001071 9 Cluster 4 of method A: up-regulation of these genes in patients with non-small cell lung cancer (NSCLC) predicts good survival outcome. www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_DN View Gene Set 9.465e-06 446 0.002264 10 Genes down-regulated in prostate cancer samples. www.broad.mit.e...
Broad SINGH_NFE2L2_TARGETS View Gene Set 1.204e-05 14 0.002617 11 Selected electrophile and drug detoxication genes down-regulated in A549 and H460 cells (lung cancer) upon knockdown of NFE2L2 [Gene ID=4780] by RNAi. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_1Q21_AMPLICON View Gene Set 1.365e-05 37 0.002721 12 Genes within amplicon 1q21 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad DOUGLAS_BMI1_TARGETS_DN View Gene Set 1.667e-05 270 0.003068 13 Genes down-regulated in A4573 cells (Ewing's sarcoma ESFT) after knockdown of BMI1 [Gene ID=648] by RNAi. www.broad.mit.e...
Broad YAGI_AML_FAB_MARKERS View Gene Set 4.153e-05 189 0.007095 14 Genes specifically expressed in FAB subtypes M2 M4 M5 and M7 of pediatric AML (acute myeloid leukemia). www.broad.mit.e...
Broad PROVENZANI_METASTASIS_UP View Gene Set 8.526e-05 188 0.01198 15 Genes up-regulated in polysomal and total RNA samples from SW480 cells (primary colorectal carcinoma CRC) compared to the SW620 cells (lymph node metastasis from the same individual). www.broad.mit.e...
Broad CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP View Gene Set 9.103e-05 228 0.01198 15 Genes up-regulated in SH-SY5Y cells (neuroblastoma) after treatment with epoxomicin [PubChem=3035402] a protease inhibitor causing apoptosis. www.broad.mit.e...
Broad LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER View Gene Set 8.976e-05 167 0.01198 15 Overexpressed genes with amplified copy number across 27 non-small cell lung cancer (NSCLC) cell lines. www.broad.mit.e...
Broad BASSO_HAIRY_CELL_LEUKEMIA_DN View Gene Set 9.518e-05 78 0.01198 15 Genes down-regulated in hairy cell leukemia (HCL) compared with normal and other neoplastic B cell populations. www.broad.mit.e...
Broad YAGI_AML_WITH_11Q23_REARRANGED View Gene Set 9.048e-05 336 0.01198 15 Genes specifically expressed in samples from patients with pediatric acute myeloid leukemia (AML) bearing 11q23 rearrangements. www.broad.mit.e...
Broad GRATIAS_RETINOBLASTOMA_16Q24 View Gene Set 0.0001238 17 0.01414 20 Genes from 16q24 region up-regulated in retinoblastoma tumors with 16q24 LOH (loss of heterozygocity) compared to those without the LOH. www.broad.mit.e...
Broad AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN View Gene Set 0.00013 218 0.01414 20 Down-regulated genes whose expression correlates with copy number losses in pancreatic adenocarcinoma cell lines and primary tumor specimens. www.broad.mit.e...
Broad NATSUME_RESPONSE_TO_INTERFERON_BETA_DN View Gene Set 0.0001246 48 0.01414 20 Genes down-regulated in T98 cells (glioma) 48 h after treatment with interferon beta. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_DN View Gene Set 0.0001648 235 0.01714 23 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_UP View Gene Set 0.0001945 131 0.01938 24 Genes up-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad IIZUKA_LIVER_CANCER_PROGRESSION_L1_G1_UP View Gene Set 0.0002087 13 0.01997 25 Genes up-regulated during transition from L1 (non-tumor infected with HCV) to G1 (well differentiated tumor infected with HCV) in the development of hepatocellular carcinoma. www.broad.mit.e...
Broad PODAR_RESPONSE_TO_ADAPHOSTIN_UP View Gene Set 0.0002282 140 0.02099 26 Up-regulated genes in MM1.S cells (multiple myeloma) treated with adaphostin [PubChem=387042] a tyrosine kinase inhibitor with anticancer properties. www.broad.mit.e...
Broad KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP View Gene Set 0.0002411 126 0.02136 27 Genes up-regulated in glioma cell lines treated with both decitabine [PubChem=451668] and TSA [PubChem=5562]. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 0.000297 353 0.02537 28 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad VANHARANTA_UTERINE_FIBROID_DN View Gene Set 0.0003524 63 0.02786 29 Genes down-regulated in uterine fibroids vs normal myometrium samples. www.broad.mit.e...
Broad STARK_HYPPOCAMPUS_22Q11_DELETION_DN View Gene Set 0.0003526 19 0.02786 29 Genes down-regulated in hyppocampus of mice carrying a hemizygotic microdeletion in the 22q11.2 region. www.broad.mit.e...
Broad WELCSH_BRCA1_TARGETS_1_UP View Gene Set 0.000361 171 0.02786 29 Upregulated by induction of exogenous BRCA1 in EcR-293 cells www.broad.mit.e...
Broad AMUNDSON_RESPONSE_TO_ARSENITE View Gene Set 0.0003852 180 0.0288 32 Genes discriminating responses to sodium arsenite [PubChem ID=26435] from other stresses. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP View Gene Set 0.0004761 532 0.03451 33 Genes diffierentially expressed in kidney biopsies from patients with well functioning kidneys more than 1-year post transplant compared to the biopsies from normal living kidney donors. www.broad.mit.e...
Broad ASTON_MAJOR_DEPRESSIVE_DISORDER_UP View Gene Set 0.0005542 46 0.03899 34 Genes up-regulated in the temporal cortex samples from patients with major depressive disorder. www.broad.mit.e...
Broad MAHADEVAN_IMATINIB_RESISTANCE_UP View Gene Set 0.0006087 22 0.04044 35 Top genes up-regulated in the GIST (gastrointestinal stromal tumor) cell line resistant to imatinib [PubChem=5291] compared to the parental cell line sensitive to the drug. www.broad.mit.e...
Broad SHEN_SMARCA2_TARGETS_UP View Gene Set 0.0005965 406 0.04044 35 Genes whose expression positively correlated with that of SMARCA2 [Gene ID=6595] in prostate cancer samples. www.broad.mit.e...
Broad KORKOLA_SEMINOMA_UP View Gene Set 0.0006361 39 0.04112 37 Genes from the 12p region that were up-regulated in seminoma tumors compared to normal testis. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_UP View Gene Set 0.000759 109 0.04639 38 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad ROSS_ACUTE_MYELOID_LEUKEMIA_CBF View Gene Set 0.0007465 79 0.04639 38 Top 100 probe sets for core-binding factor (CBF) acute myeloid leukemia (AML): contains CBFB MYH11 [Gene ID=865 4629] or AML1 ETO [Gene ID=861 862] fusions. www.broad.mit.e...
Broad FAELT_B_CLL_WITH_VH_REARRANGEMENTS_DN View Gene Set 0.0007757 46 0.04639 38 Genes down-regulated in B-CLL (B-cell chronic lymphocytic leukemia) patients with mutated immunoglobulin variable heavy chain (VH) genes. www.broad.mit.e...
Broad ENK_UV_RESPONSE_KERATINOCYTE_DN View Gene Set 0.0008124 475 0.0474 41 Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_ALLOGRAFT_REJECTION View Gene Set 3.955e-05 38 0.007356 1 Allograft rejection www.broad.mit.e...
Broad KEGG_VIRAL_MYOCARDITIS View Gene Set 8.651e-05 73 0.008045 2 Viral myocarditis www.broad.mit.e...

Gene Set Collection: Broad.c3.MIR

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad CTTTGTA MIR-524 View Gene Set 0.0001825 375 0.04033 1 Targets of MicroRNA CTTTGTA MIR-524 www.broad.mit.e... MIR-524...

Gene Set Collection: Broad.c3.TFT

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GGGCGGR_V$SP1_Q6 View Gene Set 5.183e-05 2120 0.03187 1 Genes with promoter regions [-2kb 2kb] around transcription start site containing the motif GGGCGGR which matches annotation for SP1: Sp1 transcription factor www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_143 View Gene Set 4.248e-06 14 0.001912 1 Genes in module_143 www.broad.mit.e...
Broad module_293 View Gene Set 8.424e-06 12 0.001912 1 Genes in module_293 www.broad.mit.e...
Broad module_1 View Gene Set 2.939e-05 355 0.004447 3 Genes in module_1 www.broad.mit.e...
Broad module_12 View Gene Set 0.0001089 346 0.008242 4 Genes in module_12 www.broad.mit.e...
Broad module_144 View Gene Set 9.056e-05 8 0.008242 4 Genes in module_144 www.broad.mit.e...
Broad module_560 View Gene Set 0.0001027 11 0.008242 4 Genes in module_560 www.broad.mit.e...
Broad module_19 View Gene Set 0.0001595 306 0.01034 7 Genes in module_19 www.broad.mit.e...
Broad module_471 View Gene Set 0.0001963 9 0.01114 8 Genes in module_471 www.broad.mit.e...
Broad module_11 View Gene Set 0.0005213 520 0.02192 9 Genes in module_11 www.broad.mit.e...
Broad module_66 View Gene Set 0.000468 530 0.02192 9 Genes in module_66 www.broad.mit.e...
Broad module_100 View Gene Set 0.0005312 523 0.02192 9 Genes in module_100 www.broad.mit.e...
Broad module_2 View Gene Set 0.0006761 373 0.02366 12 Genes in module_2 www.broad.mit.e...
Broad module_428 View Gene Set 0.0006774 8 0.02366 12 Genes in module_428 www.broad.mit.e...
Broad module_137 View Gene Set 0.0008997 525 0.02918 14 Genes in module_137 www.broad.mit.e...
Broad module_528 View Gene Set 0.0009878 10 0.0299 15 Genes in module_528 www.broad.mit.e...
Broad module_310 View Gene Set 0.001471 21 0.04175 16 Genes in module_310 www.broad.mit.e...

Gene Set Collection: Broad.c5.BP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad EXTRACELLULAR_STRUCTURE_ORGANIZATION_AND_BIOGENESIS View Gene Set 2.321e-05 32 0.01915 1 Genes annotated by the GO term GO:0043062. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane and also covers the host cell environment outside an intracellular parasite. www.broad.mit.e...
Broad SYNAPTOGENESIS View Gene Set 0.0001324 18 0.03641 2 Genes annotated by the GO term GO:0007416. The biosynthesis of a synapse. www.broad.mit.e...
Broad SYNAPSE_ORGANIZATION_AND_BIOGENESIS View Gene Set 0.0001058 23 0.03641 2 Genes annotated by the GO term GO:0050808. A process that is carried out at the cellular level which results in the formation arrangement of constituent parts or disassembly of a synapse the junction between a neuron and a target (neuron muscle or secretory cell). www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15164053 View Gene Set 6.146e-19 374 1.541e-15 1 DNA sequence and analysis of human chromosome 9. www.ncbi.nlm.ni...
PMID 8084338 View Gene Set 6.177e-08 21 7.743e-05 2 HIV-1 gp41 binding proteins and antibodies to gp41 could inhibit enhancement of human Raji cell MHC class I and II expression by gp41. www.ncbi.nlm.ni...
PMID 12427289 View Gene Set 2.026e-07 20 0.0001693 3 HIV-1 gp120 modulates the immunological function and expression of accessory and co-stimulatory molecules of monocyte-derived dendritic cells. www.ncbi.nlm.ni...
PMID 9223324 View Gene Set 4.07e-06 16 0.002551 4 Tat protein induces self-perpetuating permissivity for productive HIV-1 infection. www.ncbi.nlm.ni...
PMID 10729169 View Gene Set 1.943e-05 15 0.004257 5 Efficient incorporation of HLA class II onto human immunodeficiency virus type 1 requires envelope glycoprotein packaging. www.ncbi.nlm.ni...
PMID 11230163 View Gene Set 2.037e-05 68 0.004257 5 Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. www.ncbi.nlm.ni...
PMID 11322959 View Gene Set 1.238e-05 20 0.004257 5 The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation despite the difference in gene number. www.ncbi.nlm.ni...
PMID 12956878 View Gene Set 1.374e-05 10 0.004257 5 Roles of HLA-B HLA-C and HLA-DPA1 incompatibilities in the outcome of unrelated stem-cell transplantation. www.ncbi.nlm.ni...
PMID 3489470 View Gene Set 1.943e-05 15 0.004257 5 AIDS and related syndromes as a viral-induced autoimmune disease of the immune system: an anti-MHC II disorder. Therapeutic implications. www.ncbi.nlm.ni...
PMID 7602119 View Gene Set 1.943e-05 15 0.004257 5 Endocytosis of endogenously synthesized HIV-1 envelope protein. Mechanism and role in processing for association with class II MHC. www.ncbi.nlm.ni...
PMID 8376762 View Gene Set 1.943e-05 15 0.004257 5 HIV-1 envelope protein is expressed on the surface of infected cells before its processing and presentation to class II-restricted T lymphocytes. www.ncbi.nlm.ni...
PMID 9079699 View Gene Set 1.943e-05 15 0.004257 5 The enhanced immune response to the HIV gp160/LAMP chimeric gene product targeted to the lysosome membrane protein trafficking pathway. www.ncbi.nlm.ni...
PMID 12743021 View Gene Set 2.221e-05 18 0.004284 13 Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. www.ncbi.nlm.ni...
PMID 15570572 View Gene Set 3.651e-05 14 0.00638 14 Automated immobilized metal affinity chromatography/nano-liquid chromatography/electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites. www.ncbi.nlm.ni...
PMID 2286373 View Gene Set 3.818e-05 12 0.00638 14 Human metallothionein genes: structure of the functional locus at 16q13. www.ncbi.nlm.ni...
PMID 15164054 View Gene Set 4.17e-05 346 0.006534 16 The DNA sequence and comparative analysis of human chromosome 10. www.ncbi.nlm.ni...
PMID 10380929 View Gene Set 4.495e-05 72 0.006628 17 A striking organization of a large family of human neural cadherin-like cell adhesion genes. www.ncbi.nlm.ni...
PMID 1978941 View Gene Set 5.416e-05 16 0.006789 18 Identification and structural analysis of residues in the V1 region of CD4 involved in interaction with human immunodeficiency virus envelope glycoprotein gp120 and class II major histocompatibility complex molecules. www.ncbi.nlm.ni...
PMID 2543930 View Gene Set 5.416e-05 16 0.006789 18 Identification of human CD4 residues affecting class II MHC versus HIV-1 gp120 binding. www.ncbi.nlm.ni...
PMID 2846691 View Gene Set 5.416e-05 16 0.006789 18 Inhibition of CD4+ T cell function by the HIV envelope protein gp120. www.ncbi.nlm.ni...
PMID 1869305 View Gene Set 6.209e-05 14 0.007076 21 Interaction of CD4 with HLA class II antigens and HIV gp120. www.ncbi.nlm.ni...
PMID 7512597 View Gene Set 6.209e-05 14 0.007076 21 HLA class II antigens and the HIV envelope glycoprotein gp120 bind to the same face of CD4. www.ncbi.nlm.ni...
PMID 12853948 View Gene Set 9.389e-05 419 0.01023 23 The DNA sequence of human chromosome 7. www.ncbi.nlm.ni...
PMID 11318611 View Gene Set 0.0001149 15 0.01067 24 Cloning and characterization of 13 novel transcripts and the human RGS8 gene from the 1q25 region encompassing the hereditary prostate cancer (HPC1) locus. www.ncbi.nlm.ni...
PMID 12231349 View Gene Set 0.0001068 11 0.01067 24 Protocadherins. www.ncbi.nlm.ni...
PMID 14574404 View Gene Set 0.000111 615 0.01067 24 The DNA sequence and analysis of human chromosome 6. www.ncbi.nlm.ni...
PMID 20200426 View Gene Set 0.0001033 30 0.01067 24 Glutathione pathway genetic polymorphisms and lung cancer survival after platinum-based chemotherapy. www.ncbi.nlm.ni...
PMID 12690205 View Gene Set 0.0001322 528 0.01184 28 Human chromosome 7: DNA sequence and biology. www.ncbi.nlm.ni...
PMID 12643545 View Gene Set 0.0001539 29 0.01297 29 Proteomic analysis of early melanosomes: identification of novel melanosomal proteins. www.ncbi.nlm.ni...
PMID 1967269 View Gene Set 0.0001644 15 0.01297 29 HIV-gp120 can block CD4-class II MHC-mediated adhesion. www.ncbi.nlm.ni...
PMID 7541827 View Gene Set 0.0001655 20 0.01297 29 HIV gp120 inhibits T cell activation by interfering with expression of costimulatory molecules CD40 ligand and CD80 (B71). www.ncbi.nlm.ni...
PMID 8168144 View Gene Set 0.0001644 15 0.01297 29 Envelope glycoproteins of HIV-1 interfere with T-cell-dependent B cell differentiation: role of CD4-MHC class II interaction in the effector phase of T cell help. www.ncbi.nlm.ni...
PMID 16385451 View Gene Set 0.0001836 418 0.01395 33 A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. www.ncbi.nlm.ni...
PMID 19851445 View Gene Set 0.0001947 176 0.01436 34 High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. www.ncbi.nlm.ni...
PMID 10661406 View Gene Set 0.0002212 18 0.01532 35 Tat competes with CIITA for the binding to P-TEFb and blocks the expression of MHC class II genes in HIV infection. www.ncbi.nlm.ni...
PMID 11118314 View Gene Set 0.0002212 18 0.01532 35 Reciprocal modulation of transcriptional activities between HIV-1 Tat and MHC class II transactivator CIITA. www.ncbi.nlm.ni...
PMID 8892864 View Gene Set 0.0002261 14 0.01532 35 Infectivities of human and other primate lentiviruses are activated by desialylation of the virion surface. www.ncbi.nlm.ni...
PMID 1693624 View Gene Set 0.000416 10 0.02744 38 Integrin recognition of different cell-binding fragments of laminin (P1 E3 E8) and evidence that alpha 6 beta 1 but not alpha 6 beta 4 functions as a major receptor for fragment E8. www.ncbi.nlm.ni...
PMID 11751963 View Gene Set 0.0004371 21 0.02768 39 Native HIV-1 Tat protein targets monocyte-derived dendritic cells and enhances their maturation function and antigen-specific T cell responses. www.ncbi.nlm.ni...
PMID 19115949 View Gene Set 0.0004416 18 0.02768 39 Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). www.ncbi.nlm.ni...
PMID 14627618 View Gene Set 0.0005785 22 0.03537 41 Smooth muscle contraction and relaxation. www.ncbi.nlm.ni...
PMID 20381070 View Gene Set 0.0008261 40 0.04931 42 Sex-specific proteome differences in the anterior cingulate cortex of schizophrenia. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr1_147.5-152.5Mb View Gene Set 2.588e-13 109 2.883e-10 1 Genomic tile: chr1 ; 147500001-152500001 Mb genome.ucsc.edu...
Null chr1_145-150Mb View Gene Set 2.728e-11 66 1.52e-08 2 Genomic tile: chr1 ; 145000001-150000001 Mb genome.ucsc.edu...
Null chr9_32.5-37.5Mb View Gene Set 1.007e-09 67 3.738e-07 3 Genomic tile: chr9 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr14_47.5-52.5Mb View Gene Set 2.117e-09 33 5.897e-07 4 Genomic tile: chr14 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr12_52.5-57.5Mb View Gene Set 5.646e-09 86 1.258e-06 5 Genomic tile: chr12 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr14_45-50Mb View Gene Set 1.021e-08 20 1.895e-06 6 Genomic tile: chr14 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr14_30-35Mb View Gene Set 6.791e-08 19 9.776e-06 7 Genomic tile: chr14 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr9_35-40Mb View Gene Set 7.02e-08 42 9.776e-06 7 Genomic tile: chr9 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr17_25-30Mb View Gene Set 8.62e-08 52 1.067e-05 9 Genomic tile: chr17 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr12_50-55Mb View Gene Set 1.997e-07 87 2.055e-05 10 Genomic tile: chr12 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr7_97.5-102.5Mb View Gene Set 2.029e-07 63 2.055e-05 10 Genomic tile: chr7 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr12_92.5-97.5Mb View Gene Set 2.362e-07 22 2.193e-05 12 Genomic tile: chr12 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr14_32.5-37.5Mb View Gene Set 3.03e-07 24 2.565e-05 13 Genomic tile: chr14 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr18_30-35Mb View Gene Set 3.454e-07 14 2.565e-05 13 Genomic tile: chr18 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr19_42.5-47.5Mb View Gene Set 3.437e-07 95 2.565e-05 13 Genomic tile: chr19 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr18_27.5-32.5Mb View Gene Set 3.793e-07 17 2.641e-05 16 Genomic tile: chr18 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr17_2.5-7.5Mb View Gene Set 5.221e-07 77 3.421e-05 17 Genomic tile: chr17 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr9_72.5-77.5Mb View Gene Set 6.025e-07 15 3.729e-05 18 Genomic tile: chr9 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr4_0-5Mb View Gene Set 7.593e-07 45 4.452e-05 19 Genomic tile: chr4 ; 1-5000001 Mb genome.ucsc.edu...
Null chr10_102.5-107.5Mb View Gene Set 1.02e-06 45 5.683e-05 20 Genomic tile: chr10 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr15_55-60Mb View Gene Set 1.539e-06 20 7.794e-05 21 Genomic tile: chr15 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr18_42.5-47.5Mb View Gene Set 1.477e-06 19 7.794e-05 21 Genomic tile: chr18 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr10_100-105Mb View Gene Set 1.671e-06 58 8.094e-05 23 Genomic tile: chr10 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr1_177.5-182.5Mb View Gene Set 2.258e-06 27 0.0001048 24 Genomic tile: chr1 ; 177500001-182500001 Mb genome.ucsc.edu...
Null chr15_47.5-52.5Mb View Gene Set 2.558e-06 26 0.0001055 25 Genomic tile: chr15 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr17_22.5-27.5Mb View Gene Set 2.501e-06 27 0.0001055 25 Genomic tile: chr17 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr19_0-5Mb View Gene Set 2.439e-06 105 0.0001055 25 Genomic tile: chr19 ; 1-5000001 Mb genome.ucsc.edu...
Null chr12_90-95Mb View Gene Set 3.23e-06 28 0.0001285 28 Genomic tile: chr12 ; 90000001-95000001 Mb genome.ucsc.edu...
Null chr15_45-50Mb View Gene Set 3.58e-06 28 0.0001352 29 Genomic tile: chr15 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr19_45-50Mb View Gene Set 3.763e-06 81 0.0001352 29 Genomic tile: chr19 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr3_137.5-142.5Mb View Gene Set 3.676e-06 23 0.0001352 29 Genomic tile: chr3 ; 137500001-142500001 Mb genome.ucsc.edu...
Null chr8_30-35Mb View Gene Set 3.941e-06 14 0.0001372 32 Genomic tile: chr8 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr17_5-10Mb View Gene Set 4.877e-06 90 0.0001647 33 Genomic tile: chr17 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr9_117.5-122.5Mb View Gene Set 8.974e-06 31 0.000294 34 Genomic tile: chr9 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr14_27.5-32.5Mb View Gene Set 9.526e-06 12 0.0003032 35 Genomic tile: chr14 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr4_2.5-7.5Mb View Gene Set 1.007e-05 34 0.0003116 36 Genomic tile: chr4 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr16_52.5-57.5Mb View Gene Set 1.181e-05 38 0.0003556 37 Genomic tile: chr16 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr9_125-130Mb View Gene Set 1.295e-05 72 0.0003796 38 Genomic tile: chr9 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr4_5-10Mb View Gene Set 1.554e-05 28 0.000444 39 Genomic tile: chr4 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr1_150-155Mb View Gene Set 1.962e-05 106 0.0005465 40 Genomic tile: chr1 ; 150000001-155000001 Mb genome.ucsc.edu...
Null chr16_55-60Mb View Gene Set 2.113e-05 46 0.0005742 41 Genomic tile: chr16 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr22_15-20Mb View Gene Set 3.77e-05 46 0.0009773 42 Genomic tile: chr22 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr9_70-75Mb View Gene Set 3.86e-05 17 0.0009773 42 Genomic tile: chr9 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr9_95-100Mb View Gene Set 3.827e-05 33 0.0009773 42 Genomic tile: chr9 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr9_75-80Mb View Gene Set 4.589e-05 7 0.001136 45 Genomic tile: chr9 ; 75000001-80000001 Mb genome.ucsc.edu...
Null chr7_100-105Mb View Gene Set 4.906e-05 33 0.001188 46 Genomic tile: chr7 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr12_45-50Mb View Gene Set 5.764e-05 55 0.001366 47 Genomic tile: chr12 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr17_0-5Mb View Gene Set 5.913e-05 65 0.001372 48 Genomic tile: chr17 ; 1-5000001 Mb genome.ucsc.edu...
Null chr17_37.5-42.5Mb View Gene Set 6.035e-05 90 0.001372 48 Genomic tile: chr17 ; 37500001-42500001 Mb genome.ucsc.edu...
Null chr1_142.5-147.5Mb View Gene Set 6.427e-05 44 0.001432 50 Genomic tile: chr1 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr10_105-110Mb View Gene Set 7.099e-05 11 0.001551 51 Genomic tile: chr10 ; 105000001-110000001 Mb genome.ucsc.edu...
Null chr12_47.5-52.5Mb View Gene Set 8.328e-05 84 0.001784 52 Genomic tile: chr12 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr3_140-145Mb View Gene Set 8.963e-05 23 0.001884 53 Genomic tile: chr3 ; 140000001-145000001 Mb genome.ucsc.edu...
Null chr14_25-30Mb View Gene Set 0.0001276 7 0.002632 54 Genomic tile: chr14 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr15_42.5-47.5Mb View Gene Set 0.0001318 24 0.00267 55 Genomic tile: chr15 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr15_57.5-62.5Mb View Gene Set 0.0001365 25 0.002716 56 Genomic tile: chr15 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr17_27.5-32.5Mb View Gene Set 0.0001515 37 0.002944 57 Genomic tile: chr17 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr3_135-140Mb View Gene Set 0.0001533 20 0.002944 57 Genomic tile: chr3 ; 135000001-140000001 Mb genome.ucsc.edu...
Null chr1_175-180Mb View Gene Set 0.0001835 24 0.003466 59 Genomic tile: chr1 ; 175000001-180000001 Mb genome.ucsc.edu...
Null chr1_190-195Mb View Gene Set 0.0001912 11 0.003527 60 Genomic tile: chr1 ; 190000001-195000001 Mb genome.ucsc.edu...
Null chr9_122.5-127.5Mb View Gene Set 0.0001931 67 0.003527 60 Genomic tile: chr9 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chr3_142.5-147.5Mb View Gene Set 0.0002378 16 0.004272 62 Genomic tile: chr3 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr19_40-45Mb View Gene Set 0.0002538 98 0.004489 63 Genomic tile: chr19 ; 40000001-45000001 Mb genome.ucsc.edu...
Null chr9_135-140Mb View Gene Set 0.0002642 30 0.004599 64 Genomic tile: chr9 ; 135000001-140000001 Mb genome.ucsc.edu...
Null chr7_75-80Mb View Gene Set 0.0003352 21 0.005744 65 Genomic tile: chr7 ; 75000001-80000001 Mb genome.ucsc.edu...
Null chr15_70-75Mb View Gene Set 0.0003602 55 0.00608 66 Genomic tile: chr15 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr9_92.5-97.5Mb View Gene Set 0.0004619 34 0.00768 67 Genomic tile: chr9 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr1_230-235Mb View Gene Set 0.0004783 23 0.007836 68 Genomic tile: chr1 ; 230000001-235000001 Mb genome.ucsc.edu...
Null chr18_15-20Mb View Gene Set 0.0005164 16 0.008337 69 Genomic tile: chr18 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr15_60-65Mb View Gene Set 0.0005275 43 0.008395 70 Genomic tile: chr15 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr9_115-120Mb View Gene Set 0.0005519 20 0.008659 71 Genomic tile: chr9 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr5_130-135Mb View Gene Set 0.0006179 38 0.009551 72 Genomic tile: chr5 ; 130000001-135000001 Mb genome.ucsc.edu...
Null chr9_30-35Mb View Gene Set 0.0006259 35 0.009551 72 Genomic tile: chr9 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr1_62.5-67.5Mb View Gene Set 0.0006434 23 0.009685 74 Genomic tile: chr1 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr12_55-60Mb View Gene Set 0.0006748 48 0.01002 75 Genomic tile: chr12 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr9_132.5-137.5Mb View Gene Set 0.0006988 53 0.01024 76 Genomic tile: chr9 ; 132500001-137500001 Mb genome.ucsc.edu...
Null chr15_62.5-67.5Mb View Gene Set 0.0007452 38 0.01078 77 Genomic tile: chr15 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr8_12.5-17.5Mb View Gene Set 0.0007632 13 0.0109 78 Genomic tile: chr8 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr6_32.5-37.5Mb View Gene Set 0.0008045 76 0.01134 79 Genomic tile: chr6 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr8_52.5-57.5Mb View Gene Set 0.0008192 19 0.01141 80 Genomic tile: chr8 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr10_97.5-102.5Mb View Gene Set 0.0009172 42 0.01261 81 Genomic tile: chr10 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr7_125-130Mb View Gene Set 0.001002 32 0.01361 82 Genomic tile: chr7 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr14_15-20Mb View Gene Set 0.001042 20 0.01398 83 Genomic tile: chr14 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr4_25-30Mb View Gene Set 0.001069 5 0.01417 84 Genomic tile: chr4 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr10_115-120Mb View Gene Set 0.00115 23 0.015 85 Genomic tile: chr10 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr9_102.5-107.5Mb View Gene Set 0.001158 16 0.015 85 Genomic tile: chr9 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr15_52.5-57.5Mb View Gene Set 0.00118 23 0.01511 87 Genomic tile: chr15 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr5_30-35Mb View Gene Set 0.001297 18 0.01642 88 Genomic tile: chr5 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr1_140-145Mb View Gene Set 0.001402 28 0.01754 89 Genomic tile: chr1 ; 140000001-145000001 Mb genome.ucsc.edu...
Null chr7_95-100Mb View Gene Set 0.001568 51 0.01941 90 Genomic tile: chr7 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr4_110-115Mb View Gene Set 0.001696 17 0.02077 91 Genomic tile: chr4 ; 110000001-115000001 Mb genome.ucsc.edu...
Null chr8_15-20Mb View Gene Set 0.00184 20 0.0221 92 Genomic tile: chr8 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr9_105-110Mb View Gene Set 0.001845 20 0.0221 92 Genomic tile: chr9 ; 105000001-110000001 Mb genome.ucsc.edu...
Null chr7_72.5-77.5Mb View Gene Set 0.001866 22 0.02212 94 Genomic tile: chr7 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr1_65-70Mb View Gene Set 0.002151 19 0.02496 95 Genomic tile: chr1 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr6_35-40Mb View Gene Set 0.002134 41 0.02496 95 Genomic tile: chr6 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr9_0-5Mb View Gene Set 0.002192 22 0.02517 97 Genomic tile: chr9 ; 1-5000001 Mb genome.ucsc.edu...
Null chr16_27.5-32.5Mb View Gene Set 0.002397 76 0.02699 98 Genomic tile: chr16 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr9_87.5-92.5Mb View Gene Set 0.002398 31 0.02699 98 Genomic tile: chr9 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chr5_72.5-77.5Mb View Gene Set 0.002472 25 0.02754 100 Genomic tile: chr5 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr12_42.5-47.5Mb View Gene Set 0.002533 22 0.02767 101 Genomic tile: chr12 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr16_45-50Mb View Gene Set 0.002515 14 0.02767 101 Genomic tile: chr16 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr9_127.5-132.5Mb View Gene Set 0.002602 38 0.02814 103 Genomic tile: chr9 ; 127500001-132500001 Mb genome.ucsc.edu...
Null chr17_35-40Mb View Gene Set 0.002785 55 0.02908 104 Genomic tile: chr17 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr1_180-185Mb View Gene Set 0.002794 24 0.02908 104 Genomic tile: chr1 ; 180000001-185000001 Mb genome.ucsc.edu...
Null chr4_112.5-117.5Mb View Gene Set 0.002719 9 0.02908 104 Genomic tile: chr4 ; 112500001-117500001 Mb genome.ucsc.edu...
Null chr5_70-75Mb View Gene Set 0.002754 20 0.02908 104 Genomic tile: chr5 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr16_82.5-87.5Mb View Gene Set 0.002847 26 0.02936 108 Genomic tile: chr16 ; 82500001-87500001 Mb genome.ucsc.edu...
Null chr18_45-50Mb View Gene Set 0.002985 13 0.03051 109 Genomic tile: chr18 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr15_67.5-72.5Mb View Gene Set 0.003015 32 0.03054 110 Genomic tile: chr15 ; 67500001-72500001 Mb genome.ucsc.edu...
Null chr6_50-55Mb View Gene Set 0.003151 22 0.03163 111 Genomic tile: chr6 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr14_97.5-102.5Mb View Gene Set 0.003447 37 0.03429 112 Genomic tile: chr14 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr12_35-40Mb View Gene Set 0.003494 5 0.03445 113 Genomic tile: chr12 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr16_65-70Mb View Gene Set 0.003547 70 0.03466 114 Genomic tile: chr16 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr4_22.5-27.5Mb View Gene Set 0.003693 12 0.03577 115 Genomic tile: chr4 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr16_47.5-52.5Mb View Gene Set 0.003782 14 0.03621 116 Genomic tile: chr16 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr3_190-195Mb View Gene Set 0.003803 10 0.03621 116 Genomic tile: chr3 ; 190000001-195000001 Mb genome.ucsc.edu...
Null chr12_37.5-42.5Mb View Gene Set 0.003926 12 0.03706 118 Genomic tile: chr12 ; 37500001-42500001 Mb genome.ucsc.edu...
Null chr15_50-55Mb View Gene Set 0.004072 19 0.03812 119 Genomic tile: chr15 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr9_120-125Mb View Gene Set 0.00418 29 0.0388 120 Genomic tile: chr9 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr9_17.5-22.5Mb View Gene Set 0.004227 11 0.03892 121 Genomic tile: chr9 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr12_5-10Mb View Gene Set 0.004313 66 0.03938 122 Genomic tile: chr12 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr18_17.5-22.5Mb View Gene Set 0.00453 20 0.04103 123 Genomic tile: chr18 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr4_115-120Mb View Gene Set 0.004674 7 0.04199 124 Genomic tile: chr4 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr8_55-60Mb View Gene Set 0.00497 16 0.04429 125 Genomic tile: chr8 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr5_117.5-122.5Mb View Gene Set 0.005019 13 0.04437 126 Genomic tile: chr5 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr14_100-105Mb View Gene Set 0.005122 41 0.04487 127 Genomic tile: chr14 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr2_22.5-27.5Mb View Gene Set 0.005155 32 0.04487 127 Genomic tile: chr2 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr16_30-35Mb View Gene Set 0.005217 46 0.04505 129 Genomic tile: chr16 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr16_42.5-47.5Mb View Gene Set 0.00541 8 0.046 130 Genomic tile: chr16 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr9_100-105Mb View Gene Set 0.0054 8 0.046 130 Genomic tile: chr9 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr12_62.5-67.5Mb View Gene Set 0.005507 21 0.04647 132 Genomic tile: chr12 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr10_92.5-97.5Mb View Gene Set 0.005769 32 0.04725 133 Genomic tile: chr10 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr15_40-45Mb View Gene Set 0.005758 40 0.04725 133 Genomic tile: chr15 ; 40000001-45000001 Mb genome.ucsc.edu...
Null chr17_7.5-12.5Mb View Gene Set 0.005697 53 0.04725 133 Genomic tile: chr17 ; 7500001-12500001 Mb genome.ucsc.edu...
Null chr9_107.5-112.5Mb View Gene Set 0.005693 34 0.04725 133 Genomic tile: chr9 ; 107500001-112500001 Mb genome.ucsc.edu...
Null chr5_137.5-142.5Mb View Gene Set 0.005956 58 0.04843 137 Genomic tile: chr5 ; 137500001-142500001 Mb genome.ucsc.edu...
Null chr1_60-65Mb View Gene Set 0.006154 18 0.04968 138 Genomic tile: chr1 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr10_7.5-12.5Mb View Gene Set 0.0062 15 0.04969 139 Genomic tile: chr10 ; 7500001-12500001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS00203 View Gene Set 2.658e-06 13 0.0009766 1 METALLOTHIONEIN_VRT expasy.org/pros...
Null PS00290 View Gene Set 2.46e-06 86 0.0009766 1 IG_MHC expasy.org/pros...
Null PS00062 View Gene Set 0.0001766 10 0.04326 3 ALDOKETO_REDUCTASE_2 expasy.org/pros...

Gene Set Collection: Enzyme

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EC:2.5.1.18 View Gene Set 0.0001499 20 0.02368 1 Glutathione transferase expasy.org/enzy...

Gene Set Collection: ppi.BIND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null ppi.ITGB1 View Gene Set 0.0001862 11 0.03518 1 Protein-protein-interaction for ITGB1 www.ncbi.nlm.ni...

Gene Set Collection: miranda.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-1234 View Gene Set 0.0003763 510 0.0341 1 microRNA targets for hsa-miR-1234 from miranda.targets www.mirbase.org...
Null hsa-miR-200b View Gene Set 0.0002321 1789 0.0341 1 microRNA targets for hsa-miR-200b from miranda.targets www.mirbase.org...
Null hsa-miR-200c View Gene Set 0.0003021 1794 0.0341 1 microRNA targets for hsa-miR-200c from miranda.targets www.mirbase.org...
Null hsa-miR-429 View Gene Set 0.0004536 1921 0.0341 1 microRNA targets for hsa-miR-429 from miranda.targets www.mirbase.org...
Null hsa-miR-513c View Gene Set 0.0003077 1451 0.0341 1 microRNA targets for hsa-miR-513c from miranda.targets www.mirbase.org...
Null hsa-miR-608 View Gene Set 0.0005037 2815 0.0341 1 microRNA targets for hsa-miR-608 from miranda.targets www.mirbase.org...
Null hsa-miR-628-3p View Gene Set 0.0004354 932 0.0341 1 microRNA targets for hsa-miR-628-3p from miranda.targets www.mirbase.org...
Null hsa-miR-650 View Gene Set 0.0002406 1724 0.0341 1 microRNA targets for hsa-miR-650 from miranda.targets www.mirbase.org...
Null hsa-miR-760 View Gene Set 0.0002044 1689 0.0341 1 microRNA targets for hsa-miR-760 from miranda.targets www.mirbase.org...
Null hsa-miR-940 View Gene Set 0.0001201 1873 0.0341 1 microRNA targets for hsa-miR-940 from miranda.targets www.mirbase.org...
Null hsa-miR-486-3p View Gene Set 0.0006775 1921 0.04169 11 microRNA targets for hsa-miR-486-3p from miranda.targets www.mirbase.org...
Null hsa-miR-511 View Gene Set 0.0008693 2178 0.04527 12 microRNA targets for hsa-miR-511 from miranda.targets www.mirbase.org...
Null hsa-miR-664 View Gene Set 0.0008403 2111 0.04527 12 microRNA targets for hsa-miR-664 from miranda.targets www.mirbase.org...
Null hsa-miR-1266 View Gene Set 0.0009935 2015 0.04643 14 microRNA targets for hsa-miR-1266 from miranda.targets www.mirbase.org...
Null hsa-miR-633 View Gene Set 0.001029 1452 0.04643 14 microRNA targets for hsa-miR-633 from miranda.targets www.mirbase.org...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-320 View Gene Set 9.495e-05 771 0.03649 1 microRNA targets for hsa-miR-320 from mirbase.targets www.mirbase.org...
Null hsa-miR-618 View Gene Set 0.0001027 666 0.03649 1 microRNA targets for hsa-miR-618 from mirbase.targets www.mirbase.org...

Gene Set Collection: pictar.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-222 View Gene Set 7.965e-05 218 0.01418 1 microRNA targets for hsa-miR-222 from pictar.targets www.mirbase.org...
Null hsa-miR-133a View Gene Set 0.0004221 324 0.03466 2 microRNA targets for hsa-miR-133a from pictar.targets www.mirbase.org...
Null hsa-miR-221 View Gene Set 0.0005841 225 0.03466 2 microRNA targets for hsa-miR-221 from pictar.targets www.mirbase.org...
Null hsa-miR-133b View Gene Set 0.001369 337 0.04309 4 microRNA targets for hsa-miR-133b from pictar.targets www.mirbase.org...
Null hsa-miR-302b View Gene Set 0.001452 351 0.04309 4 microRNA targets for hsa-miR-302b from pictar.targets www.mirbase.org...
Null hsa-miR-330 View Gene Set 0.001377 352 0.04309 4 microRNA targets for hsa-miR-330 from pictar.targets www.mirbase.org...

Gene Set Collection: hprdBatch.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL-2 Signaling Pathway View Gene Set 1.162e-05 291 0.0002207 1 From NetPath for IL-2 Signaling Pathway www.netpath.org...

Gene Set Collection: hprdManual.DOWN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxDOWN, ranks.only=TRUE, absolute=FALSE, alternative=down

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null IL2 View Gene Set 1.565e-05 297 0.0002974 1 From NetPath for IL2 www.netpath.org...