Results

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AFA results for: tdrugda4DU

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Gene Set Collection: KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
KEGG 01100 View Gene Set 1.992e-09 1120 4.263e-07 1 Metabolic pathways www.genome.jp/d...
KEGG 00020 View Gene Set 3.372e-06 31 0.0003608 2 Citrate cycle (TCA cycle) www.genome.jp/d...
KEGG 04146 View Gene Set 1.899e-05 78 0.001018 3 Peroxisome www.genome.jp/d...
KEGG 05012 View Gene Set 1.902e-05 132 0.001018 3 Parkinson's disease www.genome.jp/d...
KEGG 00190 View Gene Set 7.408e-05 134 0.00317 5 Oxidative phosphorylation www.genome.jp/d...
KEGG 05330 View Gene Set 0.0005793 39 0.02066 6 Allograft rejection www.genome.jp/d...
KEGG 00071 View Gene Set 0.0008594 42 0.02627 7 Fatty acid metabolism www.genome.jp/d...
KEGG 04940 View Gene Set 0.0016 45 0.04279 8 Type I diabetes mellitus www.genome.jp/d...

Gene Set Collection: GO

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
GO GO:0044444 View Gene Set 1.424e-10 5184 1.902e-06 1 cytoplasmic part amigo.geneontol...
GO GO:0031090 View Gene Set 3.67e-08 1905 0.0002451 2 organelle membrane amigo.geneontol...
GO GO:0016020 View Gene Set 8.081e-08 7286 0.0003599 3 membrane amigo.geneontol...
GO GO:0005739 View Gene Set 1.237e-07 1274 0.0004133 4 mitochondrion amigo.geneontol...
GO GO:0044429 View Gene Set 1.856e-07 619 0.0004958 5 mitochondrial part amigo.geneontol...
GO GO:0016021 View Gene Set 3.362e-07 5278 0.0006827 6 integral to membrane amigo.geneontol...
GO GO:0044425 View Gene Set 3.577e-07 6145 0.0006827 6 membrane part amigo.geneontol...
GO GO:0031224 View Gene Set 5.536e-07 5387 0.0009245 8 intrinsic to membrane amigo.geneontol...
GO GO:0006091 View Gene Set 1.645e-06 339 0.002443 9 generation of precursor metabolites and energy amigo.geneontol...
GO GO:0045333 View Gene Set 3.323e-06 100 0.00444 10 cellular respiration amigo.geneontol...
GO GO:0005740 View Gene Set 4.254e-06 444 0.005167 11 mitochondrial envelope amigo.geneontol...
GO GO:0009060 View Gene Set 4.997e-06 34 0.005563 12 aerobic respiration amigo.geneontol...
GO GO:0009109 View Gene Set 6.083e-06 27 0.006251 13 coenzyme catabolic process amigo.geneontol...
GO GO:0031966 View Gene Set 9.207e-06 420 0.008786 14 mitochondrial membrane amigo.geneontol...
GO GO:0003824 View Gene Set 1.06e-05 5198 0.009442 15 catalytic activity amigo.geneontol...
GO GO:0042611 View Gene Set 1.355e-05 36 0.01131 16 MHC protein complex amigo.geneontol...
GO GO:0006099 View Gene Set 1.589e-05 22 0.01179 17 tricarboxylic acid cycle amigo.geneontol...
GO GO:0046356 View Gene Set 1.589e-05 23 0.01179 17 acetyl-CoA catabolic process amigo.geneontol...
GO GO:0005743 View Gene Set 1.753e-05 305 0.01233 19 mitochondrial inner membrane amigo.geneontol...
GO GO:0005874 View Gene Set 1.926e-05 284 0.01287 20 microtubule amigo.geneontol...
GO GO:0055114 View Gene Set 2.085e-05 647 0.01326 21 oxidation reduction amigo.geneontol...
GO GO:0044455 View Gene Set 2.405e-05 133 0.01461 22 mitochondrial membrane part amigo.geneontol...
GO GO:0044431 View Gene Set 2.99e-05 540 0.01737 23 Golgi apparatus part amigo.geneontol...
GO GO:0016491 View Gene Set 3.352e-05 689 0.01815 24 oxidoreductase activity amigo.geneontol...
GO GO:0050662 View Gene Set 3.396e-05 176 0.01815 24 coenzyme binding amigo.geneontol...
GO GO:0005777 View Gene Set 3.951e-05 99 0.01955 26 peroxisome amigo.geneontol...
GO GO:0042579 View Gene Set 3.951e-05 99 0.01955 26 microbody amigo.geneontol...
GO GO:0007017 View Gene Set 4.302e-05 281 0.02053 28 microtubule-based process amigo.geneontol...
GO GO:0000139 View Gene Set 5.273e-05 450 0.02354 29 Golgi membrane amigo.geneontol...
GO GO:0019866 View Gene Set 5.286e-05 334 0.02354 29 organelle inner membrane amigo.geneontol...
GO GO:0048037 View Gene Set 5.56e-05 249 0.02396 31 cofactor binding amigo.geneontol...
GO GO:0005794 View Gene Set 6.764e-05 893 0.02824 32 Golgi apparatus amigo.geneontol...
GO GO:0042375 View Gene Set 8.574e-05 14 0.03471 33 quinone cofactor metabolic process amigo.geneontol...
GO GO:0005737 View Gene Set 9.717e-05 7676 0.03818 34 cytoplasm amigo.geneontol...
GO GO:0015980 View Gene Set 0.0001175 163 0.04487 35 energy derivation by oxidation of organic compounds amigo.geneontol...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad PEREZ_TP53_TARGETS View Gene Set 2.675e-13 1066 6.4e-10 1 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of TP53 [Gene ID=7157] off adenoviral vector. www.broad.mit.e...
Broad RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN View Gene Set 5.564e-12 485 6.655e-09 2 Genes down-regulated in anaplastic thyroid carcinoma (ATC) compared to normal thyroid tissue. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS_UP View Gene Set 2.717e-11 368 2.167e-08 3 Genes up-regulated by ESRRA [Gene ID=2101] only. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP View Gene Set 2.858e-10 399 1.709e-07 4 Genes up-regulated in multiple myeloma (MM) cell lines treated with both decitabine [PubChem=451668] TSA [PubChem=5562]. www.broad.mit.e...
Broad RIGGI_EWING_SARCOMA_PROGENITOR_DN View Gene Set 9.254e-10 178 4.427e-07 5 Genes down-regulated in mesenchymal stem cells (MSC) engineered to express EWS-FLI1 [Gene ID=2130 2321] fusion protein. www.broad.mit.e...
Broad RIGGI_EWING_SARCOMA_PROGENITOR_UP View Gene Set 1.666e-09 399 6.64e-07 6 Genes up-regulated in mesenchymal stem cells (MSC) engineered to express EWS-FLI1 [Gene ID=2130 2321] fusion protein. www.broad.mit.e...
Broad FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN View Gene Set 4.211e-09 532 1.439e-06 7 Genes differentially expressed in kidney biopsies from patients with acute transplant rejection compared to the biopsies from patients with well functioning kidneys more than 1-year post transplant. www.broad.mit.e...
Broad PEREZ_TP63_TARGETS View Gene Set 2.455e-08 328 7.34e-06 8 Genes up-regulated in the HMEC cells (primary mammary epithelium) upon expression of the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vector. www.broad.mit.e...
Broad MOOTHA_HUMAN_MITODB_6_2002 View Gene Set 7.664e-08 420 2.037e-05 9 Mitochondrial genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad HELLER_HDAC_TARGETS_UP View Gene Set 9.883e-08 268 2.364e-05 10 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines by TSA [PubChem=5562]. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 4.885e-07 422 9.932e-05 11 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3 View Gene Set 4.983e-07 681 9.932e-05 11 The 'group 3 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad STEIN_ESRRA_TARGETS View Gene Set 5.634e-07 508 0.0001037 13 Genes regulated by ESRRA [Gene ID=2101] in MCF-7 cells (breast cancer). www.broad.mit.e...
Broad PEREZ_TP53_AND_TP63_TARGETS View Gene Set 6.683e-07 187 0.0001142 14 Genes up-regulated in HMEC cells (primary mammary epithelium) upon expression of both of TP53 [Gene ID=7157] and the transcriptionally active isoform of TP63 [Gene ID=8626] off adenoviral vectors. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 8.516e-07 433 0.0001358 15 Mitochondrial genes www.broad.mit.e...
Broad ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER View Gene Set 9.721e-07 138 0.0001453 16 The 'Cervical Cancer Proliferation Cluster' (CCPC): genes whose expression in cervical carcinoma positively correlates with that of the HPV E6 and E7 oncogenes; they are also differentially expressed according to disease outcome. www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP View Gene Set 1.071e-06 87 0.0001508 17 Top 100 probe sets contrubuting to the positive side of the 2nd principal component; associated with adipocytic differentiation. www.broad.mit.e...
Broad BENPORATH_ES_WITH_H3K27ME3 View Gene Set 1.204e-06 1094 0.0001601 18 Set 'H3K27 bound': genes posessing the trimethylated H3K27 (H3K27me3) mark in their promoters in human embryonic stem cells as identified by ChIP on chip. www.broad.mit.e...
Broad LEE_EARLY_T_LYMPHOCYTE_UP View Gene Set 2.103e-06 80 0.0002647 19 Genes up-regulated at early stages of progenitor T lymphocyte maturation compared to the late stages. www.broad.mit.e...
Broad DELYS_THYROID_CANCER_DN View Gene Set 3.375e-06 213 0.0004037 20 Genes down-regulated in papillary thyroid carcinoma (PTC) compared to normal tissue. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_UP View Gene Set 4.44e-06 1582 0.0004828 21 Genes up-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_2B View Gene Set 4.296e-06 384 0.0004828 21 Genes specifically up-regulated in Cluster IIb of urothelial cell carcinom (UCC) tumors. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_3_UP View Gene Set 5.906e-06 314 0.0006142 23 Genes whose expression profile is specific to Cluster III of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad SMID_BREAST_CANCER_BASAL_DN View Gene Set 6.267e-06 664 0.0006246 24 Genes down-regulated in basal subtype of breast cancer samles. www.broad.mit.e...
Broad SMITH_TERT_TARGETS_DN View Gene Set 8.384e-06 71 0.0008022 25 Genes consistently down-regulated in HMEC cells (primary mammary epithelium) upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad SMID_BREAST_CANCER_NORMAL_LIKE_UP View Gene Set 1.071e-05 459 0.0009851 26 Genes up-regulated in the normal-like subtype of breast cancer. www.broad.mit.e...
Broad LEE_LIVER_CANCER_SURVIVAL_UP View Gene Set 1.138e-05 130 0.001009 27 Genes highly expressed in hepatocellular carcinoma with good survival. www.broad.mit.e...
Broad BENPORATH_SUZ12_TARGETS View Gene Set 1.542e-05 1011 0.001284 28 Set 'Suz12 targets': genes identified by ChIP on chip as targets of the Polycomb protein SUZ12 [Gene ID=23512] in human embryonic stem cells. www.broad.mit.e...
Broad WALLACE_PROSTATE_CANCER_RACE_UP View Gene Set 1.61e-05 288 0.001284 28 Genes up-regulated in prostate cancer samples from African-American patients compared to those from the European-American patients. www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_PR_UP View Gene Set 1.589e-05 43 0.001284 28 Top 50 up-regulated genes in cluster PR of multiple myeloma samples characterized by increased expression of proliferation and cell cycle genes. www.broad.mit.e...
Broad RODWELL_AGING_KIDNEY_NO_BLOOD_DN View Gene Set 1.932e-05 119 0.001491 31 Genes whose expression decreases with age in normal kidney excluding those with higher expression in blood. www.broad.mit.e...
Broad DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP View Gene Set 2.629e-05 317 0.001965 32 Genes up-regulated in mARMS (molecular ARMS) compared to the mERMS (molecular ERMS) class of rhabdomyosarcoma tumors. www.broad.mit.e...
Broad CHANG_CYCLING_GENES View Gene Set 2.764e-05 49 0.002003 33 Fibroblast serum response genes showing periodic expression during the cell cycle; excluded from the core serum response signature. www.broad.mit.e...
Broad HUTTMANN_B_CLL_POOR_SURVIVAL_UP View Gene Set 3.057e-05 268 0.002151 34 Up-regulated genes in B-CLL (B-cell chronic leukemia) patients expressing high levels of ZAP70 and CD38 [Gene ID=7535 952] which are associated with poor survival. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_UP View Gene Set 3.262e-05 249 0.002229 35 Genes up-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_DN View Gene Set 3.556e-05 346 0.002332 36 Down-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_2 View Gene Set 3.607e-05 377 0.002332 36 The 'group 2 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [Gene ID=2099 2064]. www.broad.mit.e...
Broad HOSHIDA_LIVER_CANCER_SUBCLASS_S3 View Gene Set 4.785e-05 266 0.003012 38 Genes from 'subtype S3' signature of hepatocellular carcinoma (HCC): hepatocyte differentiation. www.broad.mit.e...
Broad WONG_MITOCHONDRIA_GENE_MODULE View Gene Set 5.146e-05 208 0.003156 39 Genes that comprise the mitochondria gene module www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_DN View Gene Set 6.124e-05 47 0.003662 40 Genes down-regulated in basal-like breast cancer cell lines as compared to the mesenchymal-like ones. www.broad.mit.e...
Broad ALCALAY_AML_BY_NPM1_LOCALIZATION_DN View Gene Set 6.761e-05 179 0.003945 41 Genes changed in acute myeloid leukemia (AML) with respect to cellular localization of NPM1 [Gene ID=4869]: cytoplasmic vs. nucleolar. www.broad.mit.e...
Broad CASTELLANO_NRAS_TARGETS_UP View Gene Set 9.081e-05 59 0.005051 42 Genes up-regulated in MEF cells (embryonic fibroblast) isolated from NRAS [Gene ID=4893] knockout mice. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP View Gene Set 8.984e-05 135 0.005051 42 Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability. www.broad.mit.e...
Broad GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_UP View Gene Set 9.845e-05 180 0.005352 44 Genes up-regulated in quiescent CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors compared to the dividing cells from CML (chronic myeloid leukemia) patients. www.broad.mit.e...
Broad LANDIS_ERBB2_BREAST_TUMORS_324_DN View Gene Set 0.0001025 137 0.005451 45 The 324 genes identified by two analytical methods as changed in the mammary tumors induced by transgenic expression of ERBB2 [Gene ID=2064]. www.broad.mit.e...
Broad BROWNE_HCMV_INFECTION_48HR_UP View Gene Set 0.0001264 175 0.006571 46 Genes up-regulated in primary fibroblast cell culture after infection with HCMV (AD169 strain) at 48 h time point that were not up-regulated at the previous time point 24 h. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_DN View Gene Set 0.0001521 353 0.007741 47 Genes down-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN View Gene Set 0.0001801 154 0.008977 48 Top 200 marker genes down-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation high levels of serum AFP [Gene ID=174] and chromosomal instability. www.broad.mit.e...
Broad BLALOCK_ALZHEIMERS_DISEASE_DN View Gene Set 0.0002042 1209 0.009968 49 Genes down-regulated in brain from patients with Alzheimer's disease. www.broad.mit.e...
Broad TIEN_INTESTINE_PROBIOTICS_24HR_UP View Gene Set 0.0002133 537 0.0102 50 Genes up-regulated in Caco-2 cells (intestinal epithelium) after coculture with the probiotic bacteria L. casei for 24h. www.broad.mit.e...
Broad BILD_E2F3_ONCOGENIC_SIGNATURE View Gene Set 0.000232 222 0.01087 51 Genes selected in supervised analyses to discriminate cells expressing E2F3 [Gene ID=1871] from control cells expressing GFP. www.broad.mit.e...
Broad CHUNG_BLISTER_CYTOTOXICITY_UP View Gene Set 0.0002408 126 0.01087 51 Genes changed in blister cells from patients with adverse drug reactions (ADR). www.broad.mit.e...
Broad POOLA_INVASIVE_BREAST_CANCER_UP View Gene Set 0.0002375 278 0.01087 51 Genes up-regulated in atypical ductal hyperplastic tissues from patients with (ADHC) breast cancer vs those without the cancer (ADH). www.broad.mit.e...
Broad KOYAMA_SEMA3B_TARGETS_DN View Gene Set 0.0002884 286 0.01277 54 Genes down-regulated in NCI-H1299 cells (large cell neuroendocrine carcinoma) stably expressing SEMA3B [Gene ID=7869]. www.broad.mit.e...
Broad BENPORATH_PRC2_TARGETS View Gene Set 0.000339 636 0.01448 55 Set 'PRC2 targets': Polycomb Repression Complex 2 (PRC) targets; identified by ChIP on chip on human embryonic stem cells as genes that: posess the trimethylated H3K27 mark in their promoters and are bound by SUZ12 [Gene ID=23512] and EED [Gene ID=8726] Polycomb proteins. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_UP View Gene Set 0.0003371 162 0.01448 55 Genes up-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad MOOTHA_TCA View Gene Set 0.0003763 15 0.01579 57 Tricarboxylic acid related genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad MOOTHA_VOXPHOS View Gene Set 0.0004092 82 0.01688 58 Genes involved in oxidative phosphorylation; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad GAUSSMANN_MLL_AF4_FUSION_TARGETS_E_UP View Gene Set 0.0004709 75 0.01886 59 Up-regulated genes from the set E (Fig. 5a): specific signature shared by cells expressing either MLL-AF4 [Gene ID=4297 4299] or AF4-MLL fusion proteins alone and those expressing both fusion proteins. www.broad.mit.e...
Broad RICKMAN_HEAD_AND_NECK_CANCER_A View Gene Set 0.000473 91 0.01886 59 Cluster a: genes identifying an intrinsic group in head and neck squamous cell carcinoma (HNSCC). www.broad.mit.e...
Broad KIM_LRRC3B_TARGETS View Gene Set 0.0005068 30 0.01987 61 Immune response genes up-regulated in zenograft tumors formed by SNU-601 cells (gastric cancer) made to express LRRC3B [Gene ID=116135]. www.broad.mit.e...
Broad ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN View Gene Set 0.0005166 258 0.01993 62 Genes down-regulated in macrophages by P.gingivalis FimA pathogen. www.broad.mit.e...
Broad CASORELLI_APL_SECONDARY_VS_DE_NOVO_UP View Gene Set 0.0005257 38 0.01996 63 Genes up-regulated in secondary APL (acute promyelocytic leukemia) compared to the de novo tumors. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 0.0005511 143 0.0206 64 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_DN View Gene Set 0.000573 446 0.02077 65 Genes down-regulated in prostate cancer samples. www.broad.mit.e...
Broad DOUGLAS_BMI1_TARGETS_UP View Gene Set 0.0005692 497 0.02077 65 Genes up-regulated in A4573 cells (Ewing's sarcoma ESFT) after knockdown of BMI1 [Gene ID=648] by RNAi. www.broad.mit.e...
Broad NAKAYAMA_SOFT_TISSUE_TUMORS_PCA1_DN View Gene Set 0.000598 73 0.02135 67 Top 100 probe sets contrubuting to the negative side of the 1st principal component; predominantly associated with synovial sarcoma and myxoid/round cell liposarcoma samples. www.broad.mit.e...
Broad HELLER_SILENCED_BY_METHYLATION_UP View Gene Set 0.0006183 247 0.0215 68 Genes up-regulated in at least one of three multiple myeloma (MM) cell lines treated with the DNA hypomethylating agent decitabine (5-aza-2'-deoxycytidine) [PubChem=451668]. www.broad.mit.e...
Broad CHANDRAN_METASTASIS_DN View Gene Set 0.0006201 90 0.0215 68 Genes down-regulated in metastatic tumors from the whole panel of patients with prostate cancer. www.broad.mit.e...
Broad MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP View Gene Set 0.0006387 10 0.02183 70 Up-regulated genes predicting poor survival of patients with thyroid carcinoma. www.broad.mit.e...
Broad BOYAULT_LIVER_CANCER_SUBCLASS_G3_DN View Gene Set 0.0006499 51 0.02189 71 Down-regulated genes in hepatocellular carcinoma (HCC) subclass G3 defined by unsupervised clustering. www.broad.mit.e...
Broad BAELDE_DIABETIC_NEPHROPATHY_DN View Gene Set 0.00066 35 0.02193 72 Top 50 down-regulated genes in glomeruli from kidneys with diabetic nephropathy (type 2 diabetes mellitus). www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_DN View Gene Set 0.0006738 235 0.02208 73 Genes down-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad GRABARCZYK_BCL11B_TARGETS_DN View Gene Set 0.0007089 51 0.02292 74 Genes down-regulated in Jurkat cells (transformed T lymphocytes) after knockdown of BCL11B [Gene ID=64919] by RNAi. www.broad.mit.e...
Broad BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN View Gene Set 0.0008269 599 0.02637 75 Genes down-regulated in T24 (bladder cancer) cells in response to the photodynamic therapy (PDT) stress. www.broad.mit.e...
Broad KLEIN_PRIMARY_EFFUSION_LYMPHOMA_DN View Gene Set 0.0008424 56 0.02651 76 Genes down-regulated in AIDS-related primary effusion lymphoma (PEL) samples compared to other tumor subtypes and normal B lymphocytes. www.broad.mit.e...
Broad BLUM_RESPONSE_TO_SALIRASIB_DN View Gene Set 0.0008627 332 0.0268 77 Selected genes down-regulated in response to the Ras inhibitor salirasib [PubChem=5469318] in a panel of cancer cell lines with constantly active HRAS [Gene ID=3265]. www.broad.mit.e...
Broad SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 0.0009162 296 0.02774 78 Genes down-regulated in nsopharyngeal carcinoma relative to the normal tissue. www.broad.mit.e...
Broad MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN View Gene Set 0.0009054 317 0.02774 78 The postradiation tumor escape signature: genes down-regulated in tumors from irradiated stroma vs those from non-irradiated stroma. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN View Gene Set 0.0009478 155 0.02799 80 Marker genes down-regulated in the 'unannotated' subclass of hepatocellular carcinoma (HCC) samples. www.broad.mit.e...
Broad YU_MYC_TARGETS_UP View Gene Set 0.0009465 37 0.02799 80 Genes up-regulated in B cell lymphoma tumors expressing an activated form of MYC [Gene ID=4609]. www.broad.mit.e...
Broad MOOTHA_FFA_OXYDATION View Gene Set 0.001009 22 0.02942 82 Genes involved in free fatty acid oxidation; based on literature and sequence annotation resources and coverted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad GAL_LEUKEMIC_STEM_CELL_DN View Gene Set 0.001092 239 0.03146 83 Genes down-regulated in leukemic stem cells (LSC) defined as CD34+CD38- [Gene ID=947 952] cells from AML (acute myeloid leukemia patients) compared to the CD34+CD38+ cells. www.broad.mit.e...
Broad SMID_BREAST_CANCER_LUMINAL_B_DN View Gene Set 0.001105 549 0.03146 83 Genes down-regulated in the luminal B subtype of breast cancer. www.broad.mit.e...
Broad GAUSSMANN_MLL_AF4_FUSION_TARGETS_F_UP View Gene Set 0.001181 131 0.03324 85 Up-regualted genes from the set F (Fig. 5a): specific signature shared by cells expressing AF4-MLL [Gene ID=4299 4297] alone and those expressing both AF4-MLL and MLL-AF4 fusion proteins. www.broad.mit.e...
Broad HAN_SATB1_TARGETS_UP View Gene Set 0.001286 303 0.03577 86 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of SATB1 [Gene ID=6304] by RNAi. www.broad.mit.e...
Broad CHIANG_LIVER_CANCER_SUBCLASS_POLYSOMY7_UP View Gene Set 0.001306 64 0.03592 87 Marker genes up-regulated in the 'chromosome 7 polysomy' subclass of hepatocellular carcinoma (HCC); characterized by polysomy of chromosome 7 and by a lack of gains of chromosome 8q. www.broad.mit.e...
Broad DACOSTA_UV_RESPONSE_VIA_ERCC3_UP View Gene Set 0.00134 301 0.03642 88 Genes up-regulated in fibroblasts expressing mutant forms of ERCC3 [Gene ID=2071] after UV irradiation. www.broad.mit.e...
Broad COWLING_MYCN_TARGETS View Gene Set 0.001548 41 0.0398 89 Genes down-regulated by MYCN [Gene ID=4613] but not by its transactivation-defficient trunkated form N-Myc-delta-73. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 0.001524 859 0.0398 89 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad MANALO_HYPOXIA_UP View Gene Set 0.001543 197 0.0398 89 Genes up-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad AMUNDSON_GAMMA_RADIATION_RESPONSE View Gene Set 0.001509 36 0.0398 89 Genes down-regulated across the entire panel of NCI-60 cell lines in response to gamma radiation. www.broad.mit.e...
Broad MOOTHA_PGC View Gene Set 0.001541 329 0.0398 89 Genes up-regulated in differentiating C2C12 cells (myoblasts) upon expression of PPARGC1A [Gene ID=10891] off an adenoviral vector. www.broad.mit.e...
Broad LENAOUR_DENDRITIC_CELL_MATURATION_UP View Gene Set 0.001579 92 0.04018 94 Genes up-regulated during in vitro maturation of CD14+ [Gene ID=929] monocytes (day 0) into immature (day 7) and mature dendritic cells (day 14). www.broad.mit.e...
Broad HORIUCHI_WTAP_TARGETS_UP View Gene Set 0.001599 284 0.04023 95 Genes up-regulated in primary endothelial cells (HUVEC) after knockdown of WTAP [Gene ID=9589] by RNAi. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_DN View Gene Set 0.001615 264 0.04023 95 Genes down-regulated in hepatoblastoma samples compared to normal liver tissue. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_DN View Gene Set 0.001636 205 0.04034 97 Genes down-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad TRAYNOR_RETT_SYNDROM_UP View Gene Set 0.001754 22 0.04282 98 Genes up-regulated in primary fibroblasts from Rett syndrom patients who carry mutations inactivating MECP2 [Gene ID=4204]. www.broad.mit.e...
Broad ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_UP View Gene Set 0.001782 178 0.04305 99 Genes up-regulated in 3 out of 4 NSCLC cell lines (non-small cell lung cancer) after treatment with azacitidine [PubChem=9444] and TSA [PubChem=5562]. www.broad.mit.e...
Broad CERVERA_SDHB_TARGETS_1_UP View Gene Set 0.001831 110 0.0438 100 Genes turned on in Hep3B cells (hepatocellular carcinoma HCC) upon knockdown of SDHB [Gene ID=6390] by RNAi. www.broad.mit.e...
Broad MAINA_VHL_TARGETS_UP View Gene Set 0.001891 9 0.04434 101 Genes up-regulated in RCC4 cells (renal cell carcinoma) engineered to stably express VHL [Gene ID=7428] off a plasmid vector. www.broad.mit.e...
Broad LOPEZ_MESOTHELIOMA_SURVIVAL_UP View Gene Set 0.001877 11 0.04434 101 Top genes associated with favorable survival after surgery of patients with epithelioid mesothelioma. www.broad.mit.e...
Broad HOEBEKE_LYMPHOID_STEM_CELL_DN View Gene Set 0.001975 83 0.04587 103 Genes down-regulated in the common lymphoid progenitor (CLP defined as CD34+CD38-CD7+ [Gene ID=947 952 924]) compared to a multipotent cord blood cell (defined as CD34+CD38+CD7-). www.broad.mit.e...
Broad ZHAN_MULTIPLE_MYELOMA_HP_DN View Gene Set 0.002035 43 0.0468 104 Top 50 down-regulated genes in cluster HP of multiple myeloma samples characterized by a hyperploid signature. www.broad.mit.e...
Broad WILCOX_PRESPONSE_TO_ROGESTERONE_UP View Gene Set 0.002151 143 0.04854 105 Genes up-regulated in primary cultures of ovarian surface epithlium cells exposed to progesterone [PubChem=5994] for 5 days. www.broad.mit.e...
Broad LINDGREN_BLADDER_CANCER_CLUSTER_1_DN View Gene Set 0.002139 368 0.04854 105 Genes whose expression profile is specific to Custer I of urothelial cell carcinoma (UCC) tumors. www.broad.mit.e...
Broad MUELLER_METHYLATED_IN_GLIOBLASTOMA View Gene Set 0.00223 42 0.04986 107 Genes up-regulated in short-term cultured glioblastomas after azacitidine [PubChem=9444] treatment. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_UP View Gene Set 0.002256 657 0.04996 108 Genes up-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_DN View Gene Set 0.00236 86 0.04997 109 Genes down-regulated in quiescent vs dividing CD34+ [Gene ID=8842] cells isolated from peripheral blood of normal donors. www.broad.mit.e...
Broad BENPORATH_EED_TARGETS View Gene Set 0.002296 1033 0.04997 109 Set 'Eed targets': genes identified by ChIP on chip as targets of the Polycomb protein EED [Gene ID=8726] in human embryonic stem cells. www.broad.mit.e...
Broad CHEOK_RESPONSE_TO_MERCAPTOPURINE_AND_LD_MTX_DN View Gene Set 0.00233 18 0.04997 109 Genes specifically down-regulated in pediatric acute lymphoblastic leukemia (ALL) patients by mercaptopurine [PubChem=667490] and low-dose methotrexate (LDMTX) [PubChem=4112]. www.broad.mit.e...
Broad SMID_BREAST_CANCER_RELAPSE_IN_BONE_UP View Gene Set 0.002334 95 0.04997 109 Genes up-regulated in bone relapse of breast cancer. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 0.002343 80 0.04997 109 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.KEGG

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad KEGG_CITRATE_CYCLE_TCA_CYCLE View Gene Set 3.372e-06 32 0.0006273 1 Citrate cycle (TCA cycle) www.broad.mit.e...
Broad KEGG_PEROXISOME View Gene Set 1.899e-05 78 0.001179 2 Peroxisome www.broad.mit.e...
Broad KEGG_PARKINSONS_DISEASE View Gene Set 1.902e-05 133 0.001179 2 Parkinson's disease www.broad.mit.e...
Broad KEGG_OXIDATIVE_PHOSPHORYLATION View Gene Set 7.408e-05 135 0.003445 4 Oxidative phosphorylation www.broad.mit.e...
Broad KEGG_ALLOGRAFT_REJECTION View Gene Set 0.0005793 38 0.02155 5 Allograft rejection www.broad.mit.e...
Broad KEGG_FATTY_ACID_METABOLISM View Gene Set 0.0008594 42 0.02664 6 Fatty acid metabolism www.broad.mit.e...
Broad KEGG_TYPE_I_DIABETES_MELLITUS View Gene Set 0.0016 44 0.0425 7 Type I diabetes mellitus www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_CITRIC_ACID_CYCLE View Gene Set 5.506e-05 19 0.01276 1 Genes involved in Citric acid cycle (TCA cycle) www.broad.mit.e...
Broad REACTOME_ELECTRON_TRANSPORT_CHAIN View Gene Set 9.14e-05 75 0.01276 1 Genes involved in Electron Transport Chain www.broad.mit.e...
Broad REACTOME_GLUCOSE_REGULATION_OF_INSULIN_SECRETION View Gene Set 6.758e-05 161 0.01276 1 Genes involved in Glucose Regulation of Insulin Secretion www.broad.mit.e...
Broad REACTOME_REGULATION_OF_INSULIN_SECRETION View Gene Set 0.0001187 212 0.01276 1 Genes involved in Regulation of Insulin Secretion www.broad.mit.e...
Broad REACTOME_G2_M_TRANSITION View Gene Set 0.0003493 84 0.03004 5 Genes involved in G2/M Transition www.broad.mit.e...
Broad REACTOME_POST_CHAPERONIN_TUBULIN_FOLDING_PATHWAY View Gene Set 0.0005906 19 0.04233 6 Genes involved in Post-chaperonin tubulin folding pathway www.broad.mit.e...

Gene Set Collection: Broad.c4.CGN

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad GNF2_CDC20 View Gene Set 0.0001708 52 0.02431 1 Neighborhood of CDC20 www.broad.mit.e...
Broad GNF2_CCNB2 View Gene Set 0.0001647 53 0.02431 1 Neighborhood of CCNB2 www.broad.mit.e...
Broad GNF2_HMMR View Gene Set 9.081e-05 43 0.02431 1 Neighborhood of HMMR www.broad.mit.e...
Broad GNF2_CKS2 View Gene Set 0.0002443 45 0.02608 4 Neighborhood of CKS2 www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_66 View Gene Set 2.655e-10 530 6.027e-08 1 Genes in module_66 www.broad.mit.e...
Broad module_100 View Gene Set 2.591e-10 523 6.027e-08 1 Genes in module_100 www.broad.mit.e...
Broad module_137 View Gene Set 2.217e-09 525 3.355e-07 3 Genes in module_137 www.broad.mit.e...
Broad module_11 View Gene Set 8.866e-09 520 1.006e-06 4 Genes in module_11 www.broad.mit.e...
Broad module_93 View Gene Set 2.018e-06 180 0.0001832 5 Genes in module_93 www.broad.mit.e...
Broad module_152 View Gene Set 6.51e-06 121 0.0004694 6 Genes in module_152 www.broad.mit.e...
Broad module_305 View Gene Set 7.238e-06 19 0.0004694 6 Genes in module_305 www.broad.mit.e...
Broad module_62 View Gene Set 1.019e-05 88 0.0005781 8 Genes in module_62 www.broad.mit.e...
Broad module_221 View Gene Set 1.161e-05 30 0.0005856 9 Genes in module_221 www.broad.mit.e...
Broad module_184 View Gene Set 1.951e-05 29 0.0008857 10 Genes in module_184 www.broad.mit.e...
Broad module_129 View Gene Set 2.147e-05 215 0.0008863 11 Genes in module_129 www.broad.mit.e...
Broad module_43 View Gene Set 6.731e-05 97 0.00244 12 Genes in module_43 www.broad.mit.e...
Broad module_143 View Gene Set 6.987e-05 14 0.00244 12 Genes in module_143 www.broad.mit.e...
Broad module_12 View Gene Set 0.0001223 346 0.003822 14 Genes in module_12 www.broad.mit.e...
Broad module_171 View Gene Set 0.0001263 131 0.003822 14 Genes in module_171 www.broad.mit.e...
Broad module_345 View Gene Set 0.0001371 118 0.003892 16 Genes in module_345 www.broad.mit.e...
Broad module_293 View Gene Set 0.0001465 12 0.003911 17 Genes in module_293 www.broad.mit.e...
Broad module_88 View Gene Set 0.0001763 812 0.00433 18 Genes in module_88 www.broad.mit.e...
Broad module_320 View Gene Set 0.0001812 19 0.00433 18 Genes in module_320 www.broad.mit.e...
Broad module_19 View Gene Set 0.0002075 306 0.004487 20 Genes in module_19 www.broad.mit.e...
Broad module_212 View Gene Set 0.0002056 316 0.004487 20 Genes in module_212 www.broad.mit.e...
Broad module_307 View Gene Set 0.0003152 24 0.006505 22 Genes in module_307 www.broad.mit.e...
Broad module_54 View Gene Set 0.0003343 242 0.006599 23 Genes in module_54 www.broad.mit.e...
Broad module_119 View Gene Set 0.0003622 135 0.006853 24 Genes in module_119 www.broad.mit.e...
Broad module_23 View Gene Set 0.0004539 552 0.0077 25 Genes in module_23 www.broad.mit.e...
Broad module_40 View Gene Set 0.0004579 81 0.0077 25 Genes in module_40 www.broad.mit.e...
Broad module_185 View Gene Set 0.0004528 9 0.0077 25 Genes in module_185 www.broad.mit.e...
Broad module_55 View Gene Set 0.0005421 807 0.008486 28 Genes in module_55 www.broad.mit.e...
Broad module_436 View Gene Set 0.0005403 129 0.008486 28 Genes in module_436 www.broad.mit.e...
Broad module_144 View Gene Set 0.0006365 8 0.009633 30 Genes in module_144 www.broad.mit.e...
Broad module_208 View Gene Set 0.0009668 118 0.01416 31 Genes in module_208 www.broad.mit.e...
Broad module_207 View Gene Set 0.001558 195 0.02144 32 Genes in module_207 www.broad.mit.e...
Broad module_295 View Gene Set 0.001527 21 0.02144 32 Genes in module_295 www.broad.mit.e...
Broad module_209 View Gene Set 0.001956 86 0.02537 34 Genes in module_209 www.broad.mit.e...
Broad module_451 View Gene Set 0.00191 29 0.02537 34 Genes in module_451 www.broad.mit.e...
Broad module_156 View Gene Set 0.003122 18 0.03937 36 Genes in module_156 www.broad.mit.e...
Broad module_180 View Gene Set 0.003236 113 0.03967 37 Genes in module_180 www.broad.mit.e...
Broad module_205 View Gene Set 0.00332 259 0.03967 37 Genes in module_205 www.broad.mit.e...

Gene Set Collection: Broad.c5.CC

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad MITOCHONDRION View Gene Set 0.0001344 335 0.01975 1 Genes annotated by the GO term GO:0005739. A semiautonomous self replicating organelle that occurs in varying numbers shapes and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. www.broad.mit.e...
Broad MICROBODY View Gene Set 0.0002544 46 0.01975 1 Genes annotated by the GO term GO:0042579. Cytoplasmic organelles spherical or oval in shape that are bounded by a single membrane and contain oxidative enzymes especially those utilizing hydrogen peroxide (H2O2). www.broad.mit.e...
Broad PEROXISOME View Gene Set 0.0002544 46 0.01975 1 Genes annotated by the GO term GO:0005777. A small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2). www.broad.mit.e...
Broad MITOCHONDRIAL_ENVELOPE View Gene Set 0.0005085 95 0.02962 4 Genes annotated by the GO term GO:0005740. The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. www.broad.mit.e...
Broad MICROTUBULE_CYTOSKELETON View Gene Set 0.0006441 146 0.03002 5 Genes annotated by the GO term GO:0015630. The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins. www.broad.mit.e...
Broad CYTOPLASMIC_PART View Gene Set 0.001103 1350 0.04284 6 Genes annotated by the GO term GO:0044444. Any constituent part of the cytoplasm all of the contents of a cell excluding the plasma membrane and nucleus but including other subcellular structures. www.broad.mit.e...

Gene Set Collection: pathwayCommons.humancyc

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null TCA cycle View Gene Set 5.497e-05 13 0.01429 1 HUMANCYC - TCA cycle gene set www.pathwaycomm...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. View Gene Set 1.517e-05 91 0.01695 1 REACTOME - Respiratory electron transport ATP synthesis by chemiosmotic coupling and heat production by uncoupling proteins. gene set www.pathwaycomm... ATP synthesis b... and heat produc...
Null Citric acid cycle (TCA cycle) View Gene Set 5.506e-05 19 0.02552 2 REACTOME - Citric acid cycle (TCA cycle) gene set www.pathwaycomm...
Null Mitochondrial Fatty Acid Beta-Oxidation View Gene Set 7.976e-05 14 0.02552 2 REACTOME - Mitochondrial Fatty Acid Beta-Oxidation gene set www.pathwaycomm...
Null Respiratory electron transport View Gene Set 9.14e-05 76 0.02552 2 REACTOME - Respiratory electron transport gene set www.pathwaycomm...
Null Pyruvate metabolism and Citric Acid (TCA) cycle View Gene Set 0.0001973 31 0.03639 5 REACTOME - Pyruvate metabolism and Citric Acid (TCA) cycle gene set www.pathwaycomm...
Null Post-chaperonin tubulin folding pathway View Gene Set 0.0002607 13 0.03639 5 REACTOME - Post-chaperonin tubulin folding pathway gene set www.pathwaycomm...
Null Centrosome maturation View Gene Set 0.0002422 73 0.03639 5 REACTOME - Centrosome maturation gene set www.pathwaycomm...
Null Recruitment of mitotic centrosome proteins and complexes View Gene Set 0.0002422 72 0.03639 5 REACTOME - Recruitment of mitotic centrosome proteins and complexes gene set www.pathwaycomm...

Gene Set Collection: mirbase.targets

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null hsa-miR-587 View Gene Set 2.634e-05 739 0.01779 1 microRNA targets for hsa-miR-587 from mirbase.targets www.mirbase.org...
Null hsa-miR-99b* View Gene Set 5.005e-05 571 0.01779 1 microRNA targets for hsa-miR-99b* from mirbase.targets www.mirbase.org...
Null hsa-miR-340 View Gene Set 0.0001084 581 0.02003 3 microRNA targets for hsa-miR-340 from mirbase.targets www.mirbase.org...
Null hsa-miR-871 View Gene Set 0.0001337 707 0.02003 3 microRNA targets for hsa-miR-871 from mirbase.targets www.mirbase.org...
Null hsa-miR-944 View Gene Set 0.0001409 567 0.02003 3 microRNA targets for hsa-miR-944 from mirbase.targets www.mirbase.org...
Null hsa-let-7c* View Gene Set 0.0004117 755 0.04182 6 microRNA targets for hsa-let-7c* from mirbase.targets www.mirbase.org...
Null hsa-miR-153 View Gene Set 0.0003868 745 0.04182 6 microRNA targets for hsa-miR-153 from mirbase.targets www.mirbase.org...
Null hsa-miR-142-5p View Gene Set 0.0005765 661 0.04383 8 microRNA targets for hsa-miR-142-5p from mirbase.targets www.mirbase.org...
Null hsa-miR-146a View Gene Set 0.0005657 717 0.04383 8 microRNA targets for hsa-miR-146a from mirbase.targets www.mirbase.org...
Null hsa-miR-569 View Gene Set 0.0006165 625 0.04383 8 microRNA targets for hsa-miR-569 from mirbase.targets www.mirbase.org...