Results

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Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: pathwayCommons.reactome
Go to: Gene Set Collection: hprdBatch.UP

AFA results for: tlineda2VPA

Click on the heading for any column to sort by that column.

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr8q24 View Gene Set 3.18e-18 162 1.037e-15 1 Genes in cytogenetic band chr8q24 www.broad.mit.e...
Broad chr19p13 View Gene Set 2.347e-09 514 3.825e-07 2 Genes in cytogenetic band chr19p13 www.broad.mit.e...
Broad chr8q22 View Gene Set 2.131e-08 80 2.315e-06 3 Genes in cytogenetic band chr8q22 www.broad.mit.e...
Broad chr3p25 View Gene Set 3.004e-08 83 2.448e-06 4 Genes in cytogenetic band chr3p25 www.broad.mit.e...
Broad chr3p21 View Gene Set 5.602e-08 226 3.044e-06 5 Genes in cytogenetic band chr3p21 www.broad.mit.e...
Broad chrxp11 View Gene Set 5.051e-08 224 3.044e-06 5 Genes in cytogenetic band chrxp11 www.broad.mit.e...
Broad chr14q23 View Gene Set 1.137e-07 62 5.297e-06 7 Genes in cytogenetic band chr14q23 www.broad.mit.e...
Broad chr2q12 View Gene Set 6.313e-07 48 2.572e-05 8 Genes in cytogenetic band chr2q12 www.broad.mit.e...
Broad chr20q11 View Gene Set 7.314e-07 119 2.649e-05 9 Genes in cytogenetic band chr20q11 www.broad.mit.e...
Broad chr8q21 View Gene Set 1.12e-06 73 3.651e-05 10 Genes in cytogenetic band chr8q21 www.broad.mit.e...
Broad chrxp22 View Gene Set 1.689e-06 158 5.007e-05 11 Genes in cytogenetic band chrxp22 www.broad.mit.e...
Broad chr3q12 View Gene Set 8.447e-06 42 0.0002295 12 Genes in cytogenetic band chr3q12 www.broad.mit.e...
Broad chr3q13 View Gene Set 1.226e-05 96 0.0003075 13 Genes in cytogenetic band chr3q13 www.broad.mit.e...
Broad chr1q41 View Gene Set 3.041e-05 41 0.000708 14 Genes in cytogenetic band chr1q41 www.broad.mit.e...
Broad chr3p22 View Gene Set 3.929e-05 64 0.000854 15 Genes in cytogenetic band chr3p22 www.broad.mit.e...
Broad chrxq28 View Gene Set 5.557e-05 145 0.001132 16 Genes in cytogenetic band chrxq28 www.broad.mit.e...
Broad chr20p11 View Gene Set 6.575e-05 73 0.001261 17 Genes in cytogenetic band chr20p11 www.broad.mit.e...
Broad chrxq13 View Gene Set 8.521e-05 75 0.001543 18 Genes in cytogenetic band chrxq13 www.broad.mit.e...
Broad chrxq26 View Gene Set 9.074e-05 70 0.001557 19 Genes in cytogenetic band chrxq26 www.broad.mit.e...
Broad chr4q31 View Gene Set 0.0001183 81 0.001928 20 Genes in cytogenetic band chr4q31 www.broad.mit.e...
Broad chrxq24 View Gene Set 0.0001318 44 0.002022 21 Genes in cytogenetic band chrxq24 www.broad.mit.e...
Broad chrxq22 View Gene Set 0.0001365 102 0.002022 21 Genes in cytogenetic band chrxq22 www.broad.mit.e...
Broad chr2q13 View Gene Set 0.0001585 39 0.002236 23 Genes in cytogenetic band chr2q13 www.broad.mit.e...
Broad chr3p24 View Gene Set 0.0001698 47 0.002236 23 Genes in cytogenetic band chr3p24 www.broad.mit.e...
Broad chr11q23 View Gene Set 0.0001714 124 0.002236 23 Genes in cytogenetic band chr11q23 www.broad.mit.e...
Broad chr17q23 View Gene Set 0.000209 77 0.002549 26 Genes in cytogenetic band chr17q23 www.broad.mit.e...
Broad chr17q25 View Gene Set 0.0002111 172 0.002549 26 Genes in cytogenetic band chr17q25 www.broad.mit.e...
Broad chr11q13 View Gene Set 0.000238 276 0.002771 28 Genes in cytogenetic band chr11q13 www.broad.mit.e...
Broad chr11q12 View Gene Set 0.0003913 179 0.004399 29 Genes in cytogenetic band chr11q12 www.broad.mit.e...
Broad chr1q32 View Gene Set 0.00051 149 0.005542 30 Genes in cytogenetic band chr1q32 www.broad.mit.e...
Broad chr20q13 View Gene Set 0.0005395 183 0.005673 31 Genes in cytogenetic band chr20q13 www.broad.mit.e...
Broad chr10q21 View Gene Set 0.0006496 52 0.006285 32 Genes in cytogenetic band chr10q21 www.broad.mit.e...
Broad chr4q12 View Gene Set 0.0006555 44 0.006285 32 Genes in cytogenetic band chr4q12 www.broad.mit.e...
Broad chr2q11 View Gene Set 0.0006194 69 0.006285 32 Genes in cytogenetic band chr2q11 www.broad.mit.e...
Broad chr20p12 View Gene Set 0.0007477 45 0.006965 35 Genes in cytogenetic band chr20p12 www.broad.mit.e...
Broad chr11p11 View Gene Set 0.0009693 100 0.008778 36 Genes in cytogenetic band chr11p11 www.broad.mit.e...
Broad chr11q24 View Gene Set 0.001022 95 0.009002 37 Genes in cytogenetic band chr11q24 www.broad.mit.e...
Broad chr2q37 View Gene Set 0.001198 143 0.01028 38 Genes in cytogenetic band chr2q37 www.broad.mit.e...
Broad chr2p11 View Gene Set 0.001564 143 0.01274 39 Genes in cytogenetic band chr2p11 www.broad.mit.e...
Broad chr1p36 View Gene Set 0.001547 385 0.01274 39 Genes in cytogenetic band chr1p36 www.broad.mit.e...
Broad chr17q24 View Gene Set 0.002119 44 0.01685 41 Genes in cytogenetic band chr17q24 www.broad.mit.e...
Broad chr2q14 View Gene Set 0.002598 56 0.02016 42 Genes in cytogenetic band chr2q14 www.broad.mit.e...
Broad chr3q11 View Gene Set 0.002874 20 0.02129 43 Genes in cytogenetic band chr3q11 www.broad.mit.e...
Broad chr4q13 View Gene Set 0.002822 74 0.02129 43 Genes in cytogenetic band chr4q13 www.broad.mit.e...
Broad chr12p11 View Gene Set 0.003112 36 0.02255 45 Genes in cytogenetic band chr12p11 www.broad.mit.e...
Broad chr8q23 View Gene Set 0.003739 33 0.0265 46 Genes in cytogenetic band chr8q23 www.broad.mit.e...
Broad chr3p23 View Gene Set 0.00418 14 0.02899 47 Genes in cytogenetic band chr3p23 www.broad.mit.e...
Broad chr2q View Gene Set 0.00562 9 0.03817 48 Genes in cytogenetic band chr2q www.broad.mit.e...
Broad chrxq25 View Gene Set 0.006179 25 0.04111 49 Genes in cytogenetic band chrxq25 www.broad.mit.e...
Broad chr20p13 View Gene Set 0.006556 76 0.04274 50 Genes in cytogenetic band chr20p13 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NIKOLSKY_BREAST_CANCER_8Q23_Q24_AMPLICON View Gene Set 2.461e-22 150 5.887e-19 1 Genes within amplicon 8q23-q24 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_8Q12_Q22_AMPLICON View Gene Set 1.349e-15 128 1.613e-12 2 Genes within amplicon 8q12-q22 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_DN View Gene Set 5.486e-14 217 4.374e-11 3 Genes down-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 5.921e-12 757 3.541e-09 4 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 5.321e-11 920 2.546e-08 5 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 2.28e-09 577 9.089e-07 6 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 3.279e-09 832 1.121e-06 7 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 1.156e-08 453 3.457e-06 8 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 4.396e-08 758 1.168e-05 9 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_UP View Gene Set 2.029e-07 114 4.853e-05 10 Genes up-regulated in basal-like breast cancer cell lines as compared to the mesenchymal-like ones. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_120_MCF10A View Gene Set 2.693e-07 41 5.857e-05 11 Genes whose expression peaked at 120 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 5.734e-07 46 0.0001143 12 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN View Gene Set 6.414e-07 136 0.000118 13 Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 1.069e-06 408 0.0001827 14 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_DN View Gene Set 2.288e-06 161 0.0003649 15 Genes down-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_240_MCF10A View Gene Set 3.65e-06 57 0.0005456 16 Genes whose expression peaked at 240 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 4.071e-06 1253 0.0005729 17 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 4.586e-06 68 0.0006094 18 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 4.857e-06 415 0.0006115 19 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 6.029e-06 485 0.0006867 20 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 5.923e-06 276 0.0006867 20 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 7.247e-06 436 0.000788 22 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN View Gene Set 1.216e-05 15 0.001264 23 Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors. www.broad.mit.e...
Broad MARZEC_IL2_SIGNALING_UP View Gene Set 1.351e-05 107 0.001347 24 Genes up-regulated by IL2 [Gene ID=3558] in cells derived from CD4+ [Gene ID=920] cutaneous T-cell lymphoma (CTCL). www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON View Gene Set 2.202e-05 317 0.002107 25 Genes within amplicon 17q21-q25 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad LY_AGING_OLD_DN View Gene Set 3.099e-05 47 0.002851 26 Genes up-regulated in fibroblasts from old individuals compared to those from young donors. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 3.279e-05 427 0.002905 27 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 3.723e-05 435 0.00318 28 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_UP View Gene Set 4.24e-05 64 0.003498 29 Genes up-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_3_DN View Gene Set 6.894e-05 52 0.005497 30 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelial) cells after loss of function of E-cadhedrin (CDH1) [Gene ID=999] which was achieved either by RNAi knockdown or by expression of a dominan-negative form of CDH1. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 7.611e-05 422 0.005873 31 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad OLSSON_E2F3_TARGETS_DN View Gene Set 8.375e-05 28 0.006261 32 Genes down-regulated in the 5637 cell line (bladder cancer) after knockdown of E2F3 [Gene ID=1871] by RNAi. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 9.226e-05 187 0.006491 33 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_UP View Gene Set 9.183e-05 116 0.006491 33 Up-regulated genes in MDA-MB-435 cells (breast cancer) undergoing G2/M arrest after treatment with 2-methoxyestradiol (2ME2)[PubChem=1573]. www.broad.mit.e...
Broad BIERIE_INFLAMMATORY_RESPONSE_TGFB1 View Gene Set 9.576e-05 5 0.006544 35 Inflammatory genes down-regulated in mammary carcinoma cells after stimulation with TGFB1 [Gene ID=7040] for 1 hr. www.broad.mit.e...
Broad SENESE_HDAC1_AND_HDAC2_TARGETS_UP View Gene Set 0.0001057 224 0.007021 36 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of both HDAC1 and HDAC2 [Gene ID=3065 3066] by RNAi. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 0.0001258 203 0.008135 37 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_UP View Gene Set 0.0001543 64 0.009714 38 Genes up-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad OKAWA_NEUROBLASTOMA_1P36_31_DELETION View Gene Set 0.0001806 23 0.01108 39 Genes in the smallest region of deletion (SRD) in 1p36.3 area in neuroblastoma samples. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS_IMPRINTED_AND_X_LINKED View Gene Set 0.0002292 16 0.0137 40 X chromosome and imprinted genes up-regulated in HeLa cells (cervical cancer) after knockdown of the MBD (methyl-CpG binding domain) proteins by RNAi. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 0.0002393 53 0.01396 41 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad MOOTHA_PYR View Gene Set 0.0002564 8 0.01426 42 Genes involved in pyruvate metabolism; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad MOOTHA_ROS View Gene Set 0.0002564 8 0.01426 42 Reactive oxidative species (ROS) genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 0.0003671 143 0.01871 44 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad TURASHVILI_BREAST_CARCINOMA_DUCTAL_VS_LOBULAR_UP View Gene Set 0.0003578 19 0.01871 44 Genes up-regulated in ductal vs lobular carcinoma breast tumor cells. www.broad.mit.e...
Broad AIGNER_ZEB1_TARGETS View Gene Set 0.0003636 29 0.01871 44 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of ZEB1 [Gene ID=6935] by RNAi. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C3 View Gene Set 0.0003676 20 0.01871 44 Cluster 3: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 0.0003792 243 0.01889 48 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_20Q12_Q13_AMPLICON View Gene Set 0.0004171 134 0.02036 49 Genes within amplicon 20q12-q13 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_10Q22_AMPLICON View Gene Set 0.0005179 8 0.02478 50 Genes within amplicon 10q22 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad DISTECHE_ESCAPED_FROM_X_INACTIVATION View Gene Set 0.00053 10 0.02486 51 Genes that escape X inactivation. www.broad.mit.e...
Broad LIN_SILENCED_BY_TUMOR_MICROENVIRONMENT View Gene Set 0.000625 100 0.02875 52 Genes downregulated in MCF10A cells (breast cancer) co-cultured with cancer-associated fibroblasts (CAF). www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_UP View Gene Set 0.0007421 88 0.03211 53 Genes up-regulated in prostate cancer samples. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_60_MCF10A View Gene Set 0.0007517 38 0.03211 53 Genes whose expression peaked at 60 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad WALLACE_PROSTATE_CANCER_UP View Gene Set 0.0007424 18 0.03211 53 Genes up-regulated in prostate tumor vs normal tissue samples. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 0.0007318 152 0.03211 53 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad DAZARD_UV_RESPONSE_CLUSTER_G2 View Gene Set 0.0007651 21 0.03211 53 Cluster G2: genes increasingly up-regulated in NHEK cells (normal keratinocyte) and reaching maximum levels at 12 h and 24 h after UV-B irradiation. www.broad.mit.e...
Broad ZERBINI_RESPONSE_TO_SULINDAC_UP View Gene Set 0.0008957 9 0.03694 58 Selected genes up-regulated in DU145 and PC-3 cells (prostate cancer) after treatment with the NSAID (non-steroid anti-inflammatory drug) sulindac [PubChem=5352]. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 0.0009723 1582 0.03942 59 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 0.001153 138 0.04596 60 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 0.001182 711 0.04633 61 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 0.001281 317 0.04941 62 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION View Gene Set 5.604e-05 34 0.0241 1 Genes involved in RNA PolymeraseChain Elongation www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_126 View Gene Set 1.76e-06 173 0.0007989 1 Genes in module_126 www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15772651 View Gene Set 3.296e-19 397 8.262e-16 1 The DNA sequence of the human X chromosome. www.ncbi.nlm.ni...
PMID 11780052 View Gene Set 7.379e-18 517 9.25e-15 2 The DNA sequence and comparative analysis of human chromosome 20. www.ncbi.nlm.ni...
PMID 15815621 View Gene Set 3.611e-06 437 0.003017 3 Generation and annotation of the DNA sequences of human chromosomes 2 and 4. www.ncbi.nlm.ni...
PMID 12391170 View Gene Set 5.04e-05 18 0.03159 4 Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr19_10-15Mb View Gene Set 9.274e-14 87 1.033e-10 1 Genomic tile: chr19 ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr8_145-150Mb View Gene Set 9.136e-12 33 5.089e-09 2 Genomic tile: chr8 ; 145000001-150000001 Mb genome.ucsc.edu...
Null chr8_142.5-147.5Mb View Gene Set 2.361e-11 64 8.767e-09 3 Genomic tile: chr8 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr19_7.5-12.5Mb View Gene Set 6.147e-10 79 1.712e-07 4 Genomic tile: chr19 ; 7500001-12500001 Mb genome.ucsc.edu...
Null chr19_57.5-62.5Mb View Gene Set 2.458e-08 70 4.563e-06 5 Genomic tile: chr19 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr20_32.5-37.5Mb View Gene Set 2.369e-08 53 4.563e-06 5 Genomic tile: chr20 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr19_60-65Mb View Gene Set 4.428e-08 70 7.047e-06 7 Genomic tile: chr19 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr3_120-125Mb View Gene Set 2.103e-07 45 2.603e-05 8 Genomic tile: chr3 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr3_97.5-102.5Mb View Gene Set 1.895e-07 16 2.603e-05 8 Genomic tile: chr3 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr19_12.5-17.5Mb View Gene Set 2.362e-07 85 2.632e-05 10 Genomic tile: chr19 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr8_95-100Mb View Gene Set 3.012e-07 26 2.796e-05 11 Genomic tile: chr8 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chrX_115-120Mb View Gene Set 2.985e-07 23 2.796e-05 11 Genomic tile: chrX ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr2_110-115Mb View Gene Set 4.451e-07 31 3.814e-05 13 Genomic tile: chr2 ; 110000001-115000001 Mb genome.ucsc.edu...
Null chr20_30-35Mb View Gene Set 5.098e-07 51 4.056e-05 14 Genomic tile: chr20 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr14_65-70Mb View Gene Set 6.879e-07 27 4.6e-05 15 Genomic tile: chr14 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr17_72.5-77.5Mb View Gene Set 7.227e-07 77 4.6e-05 15 Genomic tile: chr17 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr19_55-60Mb View Gene Set 6.791e-07 85 4.6e-05 15 Genomic tile: chr19 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr19_62.5-67.5Mb View Gene Set 7.433e-07 35 4.6e-05 15 Genomic tile: chr19 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr3_100-105Mb View Gene Set 1.155e-06 15 6.432e-05 19 Genomic tile: chr3 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr4_52.5-57.5Mb View Gene Set 1.154e-06 26 6.432e-05 19 Genomic tile: chr4 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chrX_147.5-152.5Mb View Gene Set 2.732e-06 55 0.0001449 21 Genomic tile: chrX ; 147500001-152500001 Mb genome.ucsc.edu...
Null chr3_12.5-17.5Mb View Gene Set 2.898e-06 35 0.0001467 22 Genomic tile: chr3 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr8_97.5-102.5Mb View Gene Set 3.142e-06 24 0.0001522 23 Genomic tile: chr8 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr14_62.5-67.5Mb View Gene Set 3.636e-06 31 0.0001657 24 Genomic tile: chr14 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chrX_45-50Mb View Gene Set 3.718e-06 58 0.0001657 24 Genomic tile: chrX ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr1_222.5-227.5Mb View Gene Set 4.133e-06 40 0.0001718 26 Genomic tile: chr1 ; 222500001-227500001 Mb genome.ucsc.edu...
Null chr2_112.5-117.5Mb View Gene Set 4.163e-06 26 0.0001718 26 Genomic tile: chr2 ; 112500001-117500001 Mb genome.ucsc.edu...
Null chr2_97.5-102.5Mb View Gene Set 7.636e-06 25 0.0002974 28 Genomic tile: chr2 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr8_122.5-127.5Mb View Gene Set 7.743e-06 23 0.0002974 28 Genomic tile: chr8 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chr17_70-75Mb View Gene Set 1.122e-05 66 0.0004135 30 Genomic tile: chr17 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr19_15-20Mb View Gene Set 1.151e-05 98 0.0004135 30 Genomic tile: chr19 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr11_62.5-67.5Mb View Gene Set 1.211e-05 119 0.0004215 32 Genomic tile: chr11 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr1_205-210Mb View Gene Set 1.472e-05 28 0.000497 33 Genomic tile: chr1 ; 205000001-210000001 Mb genome.ucsc.edu...
Null chr3_95-100Mb View Gene Set 1.553e-05 10 0.0005088 34 Genomic tile: chr3 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr1_220-225Mb View Gene Set 1.807e-05 28 0.0005703 35 Genomic tile: chr1 ; 220000001-225000001 Mb genome.ucsc.edu...
Null chr3_10-15Mb View Gene Set 1.843e-05 39 0.0005703 35 Genomic tile: chr3 ; 10000001-15000001 Mb genome.ucsc.edu...
Null chrX_117.5-122.5Mb View Gene Set 2.199e-05 18 0.0006621 37 Genomic tile: chrX ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr3_45-50Mb View Gene Set 2.641e-05 72 0.0007465 38 Genomic tile: chr3 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr8_100-105Mb View Gene Set 2.681e-05 26 0.0007465 38 Genomic tile: chr8 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chrX_150-155Mb View Gene Set 2.55e-05 52 0.0007465 38 Genomic tile: chrX ; 150000001-155000001 Mb genome.ucsc.edu...
Null chrX_42.5-47.5Mb View Gene Set 3.239e-05 33 0.0008801 41 Genomic tile: chrX ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr1_0-5Mb View Gene Set 3.455e-05 50 0.0009163 42 Genomic tile: chr1 ; 1-5000001 Mb genome.ucsc.edu...
Null chr2_235-240Mb View Gene Set 4.344e-05 18 0.001125 43 Genomic tile: chr2 ; 235000001-240000001 Mb genome.ucsc.edu...
Null chr19_17.5-22.5Mb View Gene Set 4.446e-05 66 0.001126 44 Genomic tile: chr19 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chrX_130-135Mb View Gene Set 5.003e-05 23 0.001239 45 Genomic tile: chrX ; 130000001-135000001 Mb genome.ucsc.edu...
Null chr19_5-10Mb View Gene Set 5.542e-05 67 0.001342 46 Genomic tile: chr19 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr10_35-40Mb View Gene Set 6.558e-05 10 0.001554 47 Genomic tile: chr10 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr7_87.5-92.5Mb View Gene Set 7.096e-05 15 0.001647 48 Genomic tile: chr7 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chr3_117.5-122.5Mb View Gene Set 7.751e-05 21 0.001762 49 Genomic tile: chr3 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr1_207.5-212.5Mb View Gene Set 8.016e-05 24 0.001786 50 Genomic tile: chr1 ; 207500001-212500001 Mb genome.ucsc.edu...
Null chr2_100-105Mb View Gene Set 8.926e-05 18 0.00195 51 Genomic tile: chr2 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr2_95-100Mb View Gene Set 9.518e-05 35 0.002039 52 Genomic tile: chr2 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr3_102.5-107.5Mb View Gene Set 0.0001045 7 0.002196 53 Genomic tile: chr3 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr1_202.5-207.5Mb View Gene Set 0.0001202 40 0.002458 54 Genomic tile: chr1 ; 202500001-207500001 Mb genome.ucsc.edu...
Null chr20_17.5-22.5Mb View Gene Set 0.0001213 23 0.002458 54 Genomic tile: chr20 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chrX_65-70Mb View Gene Set 0.000125 23 0.002486 56 Genomic tile: chrX ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr2_117.5-122.5Mb View Gene Set 0.0001311 17 0.002498 57 Genomic tile: chr2 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr3_47.5-52.5Mb View Gene Set 0.0001323 94 0.002498 57 Genomic tile: chr3 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr4_152.5-157.5Mb View Gene Set 0.000128 26 0.002498 57 Genomic tile: chr4 ; 152500001-157500001 Mb genome.ucsc.edu...
Null chr1_200-205Mb View Gene Set 0.0001383 57 0.002568 60 Genomic tile: chr1 ; 200000001-205000001 Mb genome.ucsc.edu...
Null chr14_20-25Mb View Gene Set 0.0001434 56 0.002619 61 Genomic tile: chr14 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr11_125-130Mb View Gene Set 0.0001532 27 0.002752 62 Genomic tile: chr11 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr14_57.5-62.5Mb View Gene Set 0.000174 23 0.003077 63 Genomic tile: chr14 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr19_20-25Mb View Gene Set 0.0002087 14 0.003633 64 Genomic tile: chr19 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chrX_7.5-12.5Mb View Gene Set 0.0002137 14 0.003663 65 Genomic tile: chrX ; 7500001-12500001 Mb genome.ucsc.edu...
Null chr8_77.5-82.5Mb View Gene Set 0.0002395 14 0.004042 66 Genomic tile: chr8 ; 77500001-82500001 Mb genome.ucsc.edu...
Null chr11_60-65Mb View Gene Set 0.0002838 104 0.004672 67 Genomic tile: chr11 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr8_125-130Mb View Gene Set 0.0002852 15 0.004672 67 Genomic tile: chr8 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr4_150-155Mb View Gene Set 0.0003253 12 0.005224 69 Genomic tile: chr4 ; 150000001-155000001 Mb genome.ucsc.edu...
Null chr8_92.5-97.5Mb View Gene Set 0.0003283 21 0.005224 69 Genomic tile: chr8 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr4_50-55Mb View Gene Set 0.0003455 11 0.00542 71 Genomic tile: chr4 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr8_87.5-92.5Mb View Gene Set 0.0003676 13 0.005675 72 Genomic tile: chr8 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chrX_12.5-17.5Mb View Gene Set 0.0003719 23 0.005675 72 Genomic tile: chrX ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr19_52.5-57.5Mb View Gene Set 0.0003832 114 0.005769 74 Genomic tile: chr19 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr11_65-70Mb View Gene Set 0.0004317 90 0.006413 75 Genomic tile: chr11 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chrX_15-20Mb View Gene Set 0.0004722 19 0.006921 76 Genomic tile: chrX ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr8_120-125Mb View Gene Set 0.0004825 21 0.00698 77 Genomic tile: chr8 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr20_2.5-7.5Mb View Gene Set 0.0004981 33 0.007023 78 Genomic tile: chr20 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr2_120-125Mb View Gene Set 0.0004955 17 0.007023 78 Genomic tile: chr2 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr4_55-60Mb View Gene Set 0.0005105 20 0.007108 80 Genomic tile: chr4 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr2_167.5-172.5Mb View Gene Set 0.0005476 22 0.007439 81 Genomic tile: chr2 ; 167500001-172500001 Mb genome.ucsc.edu...
Null chrX_112.5-117.5Mb View Gene Set 0.0005465 13 0.007439 81 Genomic tile: chrX ; 112500001-117500001 Mb genome.ucsc.edu...
Null chr20_15-20Mb View Gene Set 0.0005687 22 0.007633 83 Genomic tile: chr20 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr4_177.5-182.5Mb View Gene Set 0.0007216 7 0.009569 84 Genomic tile: chr4 ; 177500001-182500001 Mb genome.ucsc.edu...
Null chr20_25-30Mb View Gene Set 0.0008748 9 0.01147 85 Genomic tile: chr20 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr12_25-30Mb View Gene Set 0.0008995 20 0.01165 86 Genomic tile: chr12 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr20_22.5-27.5Mb View Gene Set 0.0009184 20 0.01176 87 Genomic tile: chr20 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chrX_105-110Mb View Gene Set 0.0009318 19 0.0118 88 Genomic tile: chrX ; 105000001-110000001 Mb genome.ucsc.edu...
Null chr18_57.5-62.5Mb View Gene Set 0.001002 16 0.01254 89 Genomic tile: chr18 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chrX_127.5-132.5Mb View Gene Set 0.001051 19 0.013 90 Genomic tile: chrX ; 127500001-132500001 Mb genome.ucsc.edu...
Null chr3_30-35Mb View Gene Set 0.001232 16 0.01509 91 Genomic tile: chr3 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chrX_132.5-137.5Mb View Gene Set 0.001255 17 0.0152 92 Genomic tile: chrX ; 132500001-137500001 Mb genome.ucsc.edu...
Null chr8_107.5-112.5Mb View Gene Set 0.00128 9 0.01533 93 Genomic tile: chr8 ; 107500001-112500001 Mb genome.ucsc.edu...
Null chr1_212.5-217.5Mb View Gene Set 0.001347 12 0.01595 94 Genomic tile: chr1 ; 212500001-217500001 Mb genome.ucsc.edu...
Null chr20_35-40Mb View Gene Set 0.00136 30 0.01595 94 Genomic tile: chr20 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr2_170-175Mb View Gene Set 0.00152 30 0.01764 96 Genomic tile: chr2 ; 170000001-175000001 Mb genome.ucsc.edu...
Null chr8_140-145Mb View Gene Set 0.001556 40 0.01787 97 Genomic tile: chr8 ; 140000001-145000001 Mb genome.ucsc.edu...
Null chr14_55-60Mb View Gene Set 0.001634 27 0.01858 98 Genomic tile: chr14 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr8_80-85Mb View Gene Set 0.001665 13 0.01874 99 Genomic tile: chr8 ; 80000001-85000001 Mb genome.ucsc.edu...
Null chr17_75-80Mb View Gene Set 0.001682 37 0.01874 100 Genomic tile: chr17 ; 75000001-80000001 Mb genome.ucsc.edu...
Null chr3_122.5-127.5Mb View Gene Set 0.00187 38 0.02062 101 Genomic tile: chr3 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chrX_5-10Mb View Gene Set 0.001925 11 0.02103 102 Genomic tile: chrX ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr14_22.5-27.5Mb View Gene Set 0.002061 27 0.02225 103 Genomic tile: chr14 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chrX_67.5-72.5Mb View Gene Set 0.002078 27 0.02225 103 Genomic tile: chrX ; 67500001-72500001 Mb genome.ucsc.edu...
Null chr11_32.5-37.5Mb View Gene Set 0.002153 26 0.02284 105 Genomic tile: chr11 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chrX_10-15Mb View Gene Set 0.002289 20 0.02406 106 Genomic tile: chrX ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr2_92.5-97.5Mb View Gene Set 0.002525 21 0.02628 107 Genomic tile: chr2 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr2_102.5-107.5Mb View Gene Set 0.002671 13 0.0273 108 Genomic tile: chr2 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr3_42.5-47.5Mb View Gene Set 0.002656 44 0.0273 108 Genomic tile: chr3 ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr3_20-25Mb View Gene Set 0.002814 9 0.0285 110 Genomic tile: chr3 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr11_45-50Mb View Gene Set 0.003151 35 0.03163 111 Genomic tile: chr11 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr1_2.5-7.5Mb View Gene Set 0.003326 33 0.03308 112 Genomic tile: chr1 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr11_57.5-62.5Mb View Gene Set 0.003508 71 0.03454 113 Genomic tile: chr11 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr12_27.5-32.5Mb View Gene Set 0.003535 17 0.03454 113 Genomic tile: chr12 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr8_90-95Mb View Gene Set 0.003676 16 0.03561 115 Genomic tile: chr8 ; 90000001-95000001 Mb genome.ucsc.edu...
Null chr20_27.5-32.5Mb View Gene Set 0.003877 21 0.03723 116 Genomic tile: chr20 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr8_110-115Mb View Gene Set 0.004053 6 0.03859 117 Genomic tile: chr8 ; 110000001-115000001 Mb genome.ucsc.edu...
Null chr1_210-215Mb View Gene Set 0.004166 14 0.03933 118 Genomic tile: chr1 ; 210000001-215000001 Mb genome.ucsc.edu...
Null chr1_102.5-107.5Mb View Gene Set 0.004227 6 0.03957 119 Genomic tile: chr1 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr3_50-55Mb View Gene Set 0.004475 66 0.04154 120 Genomic tile: chr3 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chr11_47.5-52.5Mb View Gene Set 0.004565 8 0.04203 121 Genomic tile: chr11 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr10_37.5-42.5Mb View Gene Set 0.004604 7 0.04204 122 Genomic tile: chr10 ; 37500001-42500001 Mb genome.ucsc.edu...
Null chr10_60-65Mb View Gene Set 0.00476 11 0.04311 123 Genomic tile: chr10 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr4_155-160Mb View Gene Set 0.004992 21 0.04485 124 Genomic tile: chr4 ; 155000001-160000001 Mb genome.ucsc.edu...
Null chr3_110-115Mb View Gene Set 0.005102 25 0.04547 125 Genomic tile: chr3 ; 110000001-115000001 Mb genome.ucsc.edu...
Null chr14_52.5-57.5Mb View Gene Set 0.005246 26 0.0463 126 Genomic tile: chr14 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chrX_70-75Mb View Gene Set 0.005278 14 0.0463 126 Genomic tile: chrX ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr11_67.5-72.5Mb View Gene Set 0.005705 42 0.04966 128 Genomic tile: chr11 ; 67500001-72500001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50805 View Gene Set 1.418e-05 415 0.01042 1 KRAB expasy.org/pros...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 6.806e-07 93 0.0007602 1 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null RNA Polymerase I Promoter Clearance View Gene Set 3.254e-06 55 0.001383 2 REACTOME - RNA Polymerase I Promoter Clearance gene set www.pathwaycomm...
Null RNA Polymerase I Chain Elongation View Gene Set 3.714e-06 49 0.001383 2 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null RNA Polymerase I Transcription View Gene Set 5.874e-06 57 0.00164 4 REACTOME - RNA Polymerase I Transcription gene set www.pathwaycomm...
Null Transcription View Gene Set 4.229e-05 178 0.009447 5 REACTOME - Transcription gene set www.pathwaycomm...

Gene Set Collection: hprdBatch.UP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null EGFR1 Signaling Pathway View Gene Set 0.003289 159 0.04885 1 From NetPath for EGFR1 Signaling Pathway www.netpath.org...
Null IL-1 Signaling Pathway View Gene Set 0.004885 154 0.04885 1 From NetPath for IL-1 Signaling Pathway www.netpath.org...