Results

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Go to: Gene Set Collection: Broad.c1.CYTOBAND
Go to: Gene Set Collection: Broad.c2.CGP
Go to: Gene Set Collection: Broad.c2.CP.REACTOME
Go to: Gene Set Collection: Broad.c4.CM
Go to: Gene Set Collection: PMID
Go to: Gene Set Collection: ChromosomalTiles5Mb
Go to: Gene Set Collection: Prosite
Go to: Gene Set Collection: pathwayCommons.reactome

AFA results for: tlineda4VPA

Click on the heading for any column to sort by that column.

Gene Set Collection: Broad.c1.CYTOBAND

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad chr8q24 View Gene Set 4.056e-20 162 1.322e-17 1 Genes in cytogenetic band chr8q24 www.broad.mit.e...
Broad chr19p13 View Gene Set 1.602e-08 514 2.612e-06 2 Genes in cytogenetic band chr19p13 www.broad.mit.e...
Broad chr8q22 View Gene Set 3.626e-08 80 2.955e-06 3 Genes in cytogenetic band chr8q22 www.broad.mit.e...
Broad chr3p25 View Gene Set 3.509e-08 83 2.955e-06 3 Genes in cytogenetic band chr3p25 www.broad.mit.e...
Broad chr3p21 View Gene Set 7.892e-08 226 5.146e-06 5 Genes in cytogenetic band chr3p21 www.broad.mit.e...
Broad chr14q23 View Gene Set 1.377e-07 62 7.48e-06 6 Genes in cytogenetic band chr14q23 www.broad.mit.e...
Broad chr2q12 View Gene Set 1.934e-07 48 9.009e-06 7 Genes in cytogenetic band chr2q12 www.broad.mit.e...
Broad chr8q21 View Gene Set 4.429e-07 73 1.638e-05 8 Genes in cytogenetic band chr8q21 www.broad.mit.e...
Broad chrxp11 View Gene Set 4.522e-07 224 1.638e-05 8 Genes in cytogenetic band chrxp11 www.broad.mit.e...
Broad chr20q11 View Gene Set 9.252e-07 119 3.016e-05 10 Genes in cytogenetic band chr20q11 www.broad.mit.e...
Broad chrxp22 View Gene Set 2.663e-06 158 7.893e-05 11 Genes in cytogenetic band chrxp22 www.broad.mit.e...
Broad chr1q41 View Gene Set 1.64e-05 41 0.0004418 12 Genes in cytogenetic band chr1q41 www.broad.mit.e...
Broad chrxq22 View Gene Set 1.762e-05 102 0.0004418 12 Genes in cytogenetic band chrxq22 www.broad.mit.e...
Broad chr3q12 View Gene Set 2.219e-05 42 0.000498 14 Genes in cytogenetic band chr3q12 www.broad.mit.e...
Broad chr3q13 View Gene Set 2.291e-05 96 0.000498 14 Genes in cytogenetic band chr3q13 www.broad.mit.e...
Broad chrxq26 View Gene Set 3.241e-05 70 0.0006604 16 Genes in cytogenetic band chrxq26 www.broad.mit.e...
Broad chrxq13 View Gene Set 3.713e-05 75 0.0007121 17 Genes in cytogenetic band chrxq13 www.broad.mit.e...
Broad chr3p22 View Gene Set 6.102e-05 64 0.001105 18 Genes in cytogenetic band chr3p22 www.broad.mit.e...
Broad chrxq24 View Gene Set 7.775e-05 44 0.001334 19 Genes in cytogenetic band chrxq24 www.broad.mit.e...
Broad chr3p24 View Gene Set 0.0001523 47 0.002483 20 Genes in cytogenetic band chr3p24 www.broad.mit.e...
Broad chrxq28 View Gene Set 0.0001777 145 0.002758 21 Genes in cytogenetic band chrxq28 www.broad.mit.e...
Broad chr20q13 View Gene Set 0.0001956 183 0.002898 22 Genes in cytogenetic band chr20q13 www.broad.mit.e...
Broad chr11q23 View Gene Set 0.0002064 124 0.002926 23 Genes in cytogenetic band chr11q23 www.broad.mit.e...
Broad chr4q31 View Gene Set 0.0002925 81 0.003973 24 Genes in cytogenetic band chr4q31 www.broad.mit.e...
Broad chr20p12 View Gene Set 0.0003968 45 0.005174 25 Genes in cytogenetic band chr20p12 www.broad.mit.e...
Broad chr10q21 View Gene Set 0.0004627 52 0.005393 26 Genes in cytogenetic band chr10q21 www.broad.mit.e...
Broad chr4q12 View Gene Set 0.0004632 44 0.005393 26 Genes in cytogenetic band chr4q12 www.broad.mit.e...
Broad chr20p11 View Gene Set 0.0004307 73 0.005393 26 Genes in cytogenetic band chr20p11 www.broad.mit.e...
Broad chr17q25 View Gene Set 0.0005032 172 0.005657 29 Genes in cytogenetic band chr17q25 www.broad.mit.e...
Broad chr17q23 View Gene Set 0.0005206 77 0.005657 30 Genes in cytogenetic band chr17q23 www.broad.mit.e...
Broad chr2q11 View Gene Set 0.0005845 69 0.006146 31 Genes in cytogenetic band chr2q11 www.broad.mit.e...
Broad chr2p11 View Gene Set 0.0006419 143 0.00654 32 Genes in cytogenetic band chr2p11 www.broad.mit.e...
Broad chr11q24 View Gene Set 0.001034 95 0.01021 33 Genes in cytogenetic band chr11q24 www.broad.mit.e...
Broad chr11q12 View Gene Set 0.001102 179 0.01056 34 Genes in cytogenetic band chr11q12 www.broad.mit.e...
Broad chr2q13 View Gene Set 0.001326 39 0.01235 35 Genes in cytogenetic band chr2q13 www.broad.mit.e...
Broad chr11q13 View Gene Set 0.001449 276 0.01305 36 Genes in cytogenetic band chr11q13 www.broad.mit.e...
Broad chr11p11 View Gene Set 0.001481 100 0.01305 36 Genes in cytogenetic band chr11p11 www.broad.mit.e...
Broad chr12p11 View Gene Set 0.002291 36 0.01893 38 Genes in cytogenetic band chr12p11 www.broad.mit.e...
Broad chr2q37 View Gene Set 0.002357 143 0.01893 38 Genes in cytogenetic band chr2q37 www.broad.mit.e...
Broad chr2q14 View Gene Set 0.002381 56 0.01893 38 Genes in cytogenetic band chr2q14 www.broad.mit.e...
Broad chr3q11 View Gene Set 0.002282 20 0.01893 38 Genes in cytogenetic band chr3q11 www.broad.mit.e...
Broad chr17q24 View Gene Set 0.002677 44 0.02078 42 Genes in cytogenetic band chr17q24 www.broad.mit.e...
Broad chr1q32 View Gene Set 0.002747 149 0.02083 43 Genes in cytogenetic band chr1q32 www.broad.mit.e...
Broad chrxq25 View Gene Set 0.002942 25 0.0218 44 Genes in cytogenetic band chrxq25 www.broad.mit.e...
Broad chr4q13 View Gene Set 0.00338 74 0.02449 45 Genes in cytogenetic band chr4q13 www.broad.mit.e...
Broad chr20p13 View Gene Set 0.003925 76 0.02782 46 Genes in cytogenetic band chr20p13 www.broad.mit.e...
Broad chr2q View Gene Set 0.004052 9 0.02811 47 Genes in cytogenetic band chr2q www.broad.mit.e...
Broad chr1p36 View Gene Set 0.005233 385 0.03554 48 Genes in cytogenetic band chr1p36 www.broad.mit.e...
Broad chr3p23 View Gene Set 0.006161 14 0.04099 49 Genes in cytogenetic band chr3p23 www.broad.mit.e...
Broad chr8q23 View Gene Set 0.006527 33 0.04256 50 Genes in cytogenetic band chr8q23 www.broad.mit.e...

Gene Set Collection: Broad.c2.CGP

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad NIKOLSKY_BREAST_CANCER_8Q23_Q24_AMPLICON View Gene Set 2.89e-23 150 6.912e-20 1 Genes within amplicon 8q23-q24 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad COLDREN_GEFITINIB_RESISTANCE_DN View Gene Set 5.801e-16 217 6.938e-13 2 Genes down-regulated in NSCLC (non-small cell lung carcinoma) cell lines resistant to gefitinib [PubChem=123631] compared to the sensitive ones. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_8Q12_Q22_AMPLICON View Gene Set 2.169e-15 128 1.729e-12 3 Genes within amplicon 8q12-q22 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN View Gene Set 6.46e-11 920 3.863e-08 4 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 24 h. www.broad.mit.e...
Broad WEI_MYCN_TARGETS_WITH_E_BOX View Gene Set 1.066e-10 757 4.251e-08 5 Genes whose promoters contain E-box motifs and whose expression changed in MYCN-3 cells (neuroblastoma) upon induction of MYCN [Gene ID=4613]. www.broad.mit.e...
Broad CAIRO_HEPATOBLASTOMA_CLASSES_UP View Gene Set 1.056e-10 577 4.251e-08 5 Genes up-regulated in robust Cluster 2 (rC2) of hepatoblastoma samples compared to those in the robust Cluster 1 (rC1). www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_2_DN View Gene Set 3.299e-09 453 1.127e-06 7 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelium) after E-cadhedrin (CDH1) [Gene ID=999] knockdown by RNAi. www.broad.mit.e...
Broad KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN View Gene Set 6.066e-09 832 1.814e-06 8 Genes down-regulated in HL-60 cells (acute promyelocytic leukemia APL) after treatment with the aminopeptidase inhibitor tosedostat (CHR-2797) [PubChem=15547703] for 6 h. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_UP View Gene Set 1.183e-08 114 3.144e-06 9 Genes up-regulated in basal-like breast cancer cell lines as compared to the mesenchymal-like ones. www.broad.mit.e...
Broad NUYTTEN_NIPP1_TARGETS_DN View Gene Set 3.831e-08 758 9.164e-06 10 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of NIPP1 [Gene ID=5511] by RNAi. www.broad.mit.e...
Broad DODD_NASOPHARYNGEAL_CARCINOMA_DN View Gene Set 6.596e-07 1253 0.0001351 11 Genes down-regulated in nasopharyngeal carcinoma (NPC) compared to the normal tissue. www.broad.mit.e...
Broad SCHLOSSER_MYC_TARGETS_AND_SERUM_RESPONSE_DN View Gene Set 6.777e-07 46 0.0001351 11 Cluster 6: genes down-regulated in B493-6 cells (B lymphocytes) by MYC [Gene ID=4609] in combination with serum but not affected by serum alone; they are also up-regulated by MYC alone. www.broad.mit.e...
Broad VECCHI_GASTRIC_CANCER_EARLY_UP View Gene Set 8.322e-07 408 0.0001422 13 Up-regulated genes distinguishing between early gastric cancer (EGC) and normal tissue samples. www.broad.mit.e...
Broad AMIT_EGF_RESPONSE_120_MCF10A View Gene Set 8.077e-07 41 0.0001422 13 Genes whose expression peaked at 120 min after stimulation of MCF10A cells with EGF [Gene ID=1950]. www.broad.mit.e...
Broad MANALO_HYPOXIA_DN View Gene Set 1.84e-06 276 0.0002935 15 Genes down-regulated in response to both hypoxia and overexpression of an active form of HIF1A [Gene ID=3091]. www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_1_DN View Gene Set 2.292e-06 161 0.0003426 16 Genes down-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [Gene ID=999]. www.broad.mit.e...
Broad ELVIDGE_HYPOXIA_DN View Gene Set 3.034e-06 136 0.0004269 17 Genes down-regulated in MCF7 cells (breast cancer) under hypoxia conditions. www.broad.mit.e...
Broad CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP View Gene Set 1.362e-05 422 0.00181 18 Genes up-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. www.broad.mit.e...
Broad SCHUHMACHER_MYC_TARGETS_UP View Gene Set 2.122e-05 68 0.002672 19 Genes up-regulated in P493-6 cells (Burkitt's lymphoma) induced to express MYC [Gene ID=4609]. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON View Gene Set 2.94e-05 317 0.003197 20 Genes within amplicon 17q21-q25 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad GRADE_COLON_CANCER_UP View Gene Set 2.878e-05 711 0.003197 20 Up-regulated genes in colon carcinoma tumors compared to the matched normal mucosa samples. www.broad.mit.e...
Broad LY_AGING_OLD_DN View Gene Set 2.681e-05 47 0.003197 20 Genes up-regulated in fibroblasts from old individuals compared to those from young donors. www.broad.mit.e...
Broad TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C View Gene Set 3.377e-05 436 0.003366 23 Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [Gene ID=407041 407042] microRNAs. www.broad.mit.e...
Broad MOOTHA_MITOCHONDRIA View Gene Set 3.242e-05 433 0.003366 23 Mitochondrial genes www.broad.mit.e...
Broad ONDER_CDH1_TARGETS_3_DN View Gene Set 4.234e-05 52 0.004008 25 Genes down-regulated in HMLE cells (immortalized nontransformed mammary epithelial) cells after loss of function of E-cadhedrin (CDH1) [Gene ID=999] which was achieved either by RNAi knockdown or by expression of a dominan-negative form of CDH1. www.broad.mit.e...
Broad LY_AGING_MIDDLE_DN View Gene Set 4.356e-05 15 0.004008 25 Genes down-regulated in fibroblasts from middle-age individuals compared to those from the young donors. www.broad.mit.e...
Broad SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6 View Gene Set 6.308e-05 435 0.005588 27 Cluster 6 of method A: up-regulation of these genes in patients with non???small cell lung cancer (NSCLC) predicts poor survival outcome. www.broad.mit.e...
Broad BERENJENO_TRANSFORMED_BY_RHOA_UP View Gene Set 7.799e-05 485 0.006433 28 Genes up-regulated in NIH3T3 cells (fibroblasts) transformed by expression of contitutively active (Q63L) form of RHOA [Gene ID=387] off plasmid vector. www.broad.mit.e...
Broad KANG_DOXORUBICIN_RESISTANCE_UP View Gene Set 7.705e-05 53 0.006433 28 Genes differentialy expressed in gastric cancer cell lines: doxorubicin [PubChem=31703] resistant vs sensitive. www.broad.mit.e...
Broad GARY_CD5_TARGETS_DN View Gene Set 0.0001086 415 0.008407 30 Genes down-regulated in Daudi cells (B lymphocytes) stably expressing CD5 [Gene ID=921] off a plasmid vector. www.broad.mit.e...
Broad AMIT_SERUM_RESPONSE_240_MCF10A View Gene Set 0.0001089 57 0.008407 30 Genes whose expression peaked at 240 min after stimulation of MCF10A cells with serum. www.broad.mit.e...
Broad LOPEZ_MBD_TARGETS_IMPRINTED_AND_X_LINKED View Gene Set 0.0001257 16 0.009254 32 X chromosome and imprinted genes up-regulated in HeLa cells (cervical cancer) after knockdown of the MBD (methyl-CpG binding domain) proteins by RNAi. www.broad.mit.e...
Broad MARZEC_IL2_SIGNALING_UP View Gene Set 0.0001277 107 0.009254 32 Genes up-regulated by IL2 [Gene ID=3558] in cells derived from CD4+ [Gene ID=920] cutaneous T-cell lymphoma (CTCL). www.broad.mit.e...
Broad BIERIE_INFLAMMATORY_RESPONSE_TGFB1 View Gene Set 0.0001391 5 0.009787 34 Inflammatory genes down-regulated in mammary carcinoma cells after stimulation with TGFB1 [Gene ID=7040] for 1 hr. www.broad.mit.e...
Broad LIN_SILENCED_BY_TUMOR_MICROENVIRONMENT View Gene Set 0.0001643 100 0.01084 35 Genes downregulated in MCF10A cells (breast cancer) co-cultured with cancer-associated fibroblasts (CAF). www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_20Q12_Q13_AMPLICON View Gene Set 0.00017 134 0.01084 35 Genes within amplicon 20q12-q13 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad MOOTHA_PYR View Gene Set 0.0001722 8 0.01084 35 Genes involved in pyruvate metabolism; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad MOOTHA_ROS View Gene Set 0.0001722 8 0.01084 35 Reactive oxidative species (ROS) genes; based on literature and sequence annotation resources and converted to Affymetrix HG-U133A probe sets. www.broad.mit.e...
Broad BIDUS_METASTASIS_UP View Gene Set 0.0001803 203 0.01094 39 Genes up-regulated in endometroid endometrial tumors from patients with lymph node metastases compared to those without the metastases. www.broad.mit.e...
Broad NUYTTEN_EZH2_TARGETS_DN View Gene Set 0.000183 859 0.01094 39 Genes down-regulated in PC3 cells (prostate cancer) after knockdown of EZH2 [Gene ID=2146] by RNAi. www.broad.mit.e...
Broad ELVIDGE_HIF1A_TARGETS_UP View Gene Set 0.0001884 64 0.01099 41 Genes up-regulated in MCF7 cells (breast cancer) after knockdown of HIF1A [Gene ID=3091] by RNAi. www.broad.mit.e...
Broad PUJANA_BRCA1_PCC_NETWORK View Gene Set 0.0002088 1582 0.01189 42 Genes constituting the BRCA1-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient PCC >= 0.4) with that of BRCA1 [Gene ID=672] across a compendium of normal tissues. www.broad.mit.e...
Broad OLSSON_E2F3_TARGETS_DN View Gene Set 0.0002298 28 0.01278 43 Genes down-regulated in the 5637 cell line (bladder cancer) after knockdown of E2F3 [Gene ID=1871] by RNAi. www.broad.mit.e...
Broad SENESE_HDAC1_TARGETS_UP View Gene Set 0.0002388 427 0.01298 44 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of HDAC1 [Gene ID=3065] by RNAi. www.broad.mit.e...
Broad HAHTOLA_MYCOSIS_FUNGOIDES_CD4_UP View Gene Set 0.0002645 64 0.01379 45 Genes up-regulated in T helper cells (defines as CD4+) isolated from patients with mucosis fungoides compared to those from normal control donors. www.broad.mit.e...
Broad BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_UP View Gene Set 0.0002652 116 0.01379 45 Up-regulated genes in MDA-MB-435 cells (breast cancer) undergoing G2/M arrest after treatment with 2-methoxyestradiol (2ME2)[PubChem=1573]. www.broad.mit.e...
Broad KOBAYASHI_EGFR_SIGNALING_24HR_DN View Gene Set 0.0003061 243 0.01558 47 Genes down-regulated in H1975 cells (non-small cell lung cancer NSCLC) resistant to gefitinib [PubChem=123631] after treatment with EGFR inhibitor CL-387785 [PubChem=2776] for 24h. www.broad.mit.e...
Broad OKAWA_NEUROBLASTOMA_1P36_31_DELETION View Gene Set 0.0003822 23 0.01905 48 Genes in the smallest region of deletion (SRD) in 1p36.3 area in neuroblastoma samples. www.broad.mit.e...
Broad DAIRKEE_TERT_TARGETS_UP View Gene Set 0.0003993 317 0.01949 49 Genes up-regulated in non-spontaneously immortalizing (NSI) primary breast cancer tumor cultures upon expression of TERT [Gene ID=7015] off a retroviral vector. www.broad.mit.e...
Broad WONG_EMBRYONIC_STEM_CELL_CORE View Gene Set 0.0004693 331 0.02245 50 The 'core ESC-like gene module': genes coordinately up-regulated in a compendium of mouse embryonic stem cells (ESC) which are shared with the human ESC-like module. www.broad.mit.e...
Broad NIKOLSKY_BREAST_CANCER_10Q22_AMPLICON View Gene Set 0.0005819 8 0.02729 51 Genes within amplicon 10q22 identified in a copy number alterations study of 191 breast tumor samples. www.broad.mit.e...
Broad TURASHVILI_BREAST_CARCINOMA_DUCTAL_VS_LOBULAR_UP View Gene Set 0.0006142 19 0.02825 52 Genes up-regulated in ductal vs lobular carcinoma breast tumor cells. www.broad.mit.e...
Broad CROONQUIST_IL6_DEPRIVATION_DN View Gene Set 0.0006445 80 0.02909 53 Genes down-regulated in the ANBL-6 cell line (multiple myeloma MM) after withdrawal of IL6 [Gene ID=3569]. www.broad.mit.e...
Broad LIU_PROSTATE_CANCER_UP View Gene Set 0.0006888 88 0.03051 54 Genes up-regulated in prostate cancer samples. www.broad.mit.e...
Broad BILD_MYC_ONCOGENIC_SIGNATURE View Gene Set 0.0007156 187 0.03112 55 Genes selected in supervised analyses to discriminate cells expressing c-Myc [Gene ID=4609] from control cells expressing GFP. www.broad.mit.e...
Broad SENESE_HDAC1_AND_HDAC2_TARGETS_UP View Gene Set 0.0007667 224 0.03217 56 Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of both HDAC1 and HDAC2 [Gene ID=3065 3066] by RNAi. www.broad.mit.e...
Broad AIGNER_ZEB1_TARGETS View Gene Set 0.000761 29 0.03217 56 Genes up-regulated in MDA-MB-231 cells (breast cancer) after knockdown of ZEB1 [Gene ID=6935] by RNAi. www.broad.mit.e...
Broad KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP View Gene Set 0.0007838 1180 0.03232 58 Genes up-regulated in TC71 and EWS502 cells (Ewing's sarcoma) upon knockdown of the EWSR1-FLII fusion [Gene ID=2130 2314]. www.broad.mit.e...
Broad SESTO_RESPONSE_TO_UV_C3 View Gene Set 0.0008211 20 0.03329 59 Cluster 3: genes changed in primary keratinocytes by UVB irradiation. www.broad.mit.e...
Broad SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_UP View Gene Set 0.0009008 143 0.03584 60 Up-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3. www.broad.mit.e...
Broad WINNEPENNINCKX_MELANOMA_METASTASIS_UP View Gene Set 0.000914 152 0.03584 60 Genes from the 254-gene classifier which were up-regulated in melanoma patients with a reported distant metastasis within 4 years. www.broad.mit.e...
Broad RUIZ_TNC_TARGETS_DN View Gene Set 0.0009594 138 0.03702 62 Genes down-regulated in T98G cells (glioblastoma) by TNC [Gene ID=3371]. www.broad.mit.e...
Broad PUJANA_CHEK2_PCC_NETWORK View Gene Set 0.000981 744 0.03725 63 Genes constituting the CHEK2-PCC network of transcripts whose expression positively correlates (Pearson correlation coefficient PCC >= 0.4) with that of CHEK2 [Gene ID=11200]. www.broad.mit.e...
Broad DANG_MYC_TARGETS_UP View Gene Set 0.001092 127 0.04081 64 Genes up-regulated by MYC [Gene ID=4609] and whose promoters are bound by MYC according to MYC Target Gene Database. www.broad.mit.e...
Broad LY_AGING_PREMATURE_DN View Gene Set 0.001252 24 0.04609 65 Genes down-regulated in fibroblasts from patients with Hutchinson-Gilford progeria (premature aging) compared to those from normal young individuals. www.broad.mit.e...

Gene Set Collection: Broad.c2.CP.REACTOME

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad REACTOME_RNA_POLYMERASE_I_CHAIN_ELONGATION View Gene Set 7.742e-06 34 0.003329 1 Genes involved in RNA PolymeraseChain Elongation www.broad.mit.e...
Broad REACTOME_TRANSLATION View Gene Set 5.132e-05 120 0.01103 2 Genes involved in Translation www.broad.mit.e...
Broad REACTOME_GENE_EXPRESSION View Gene Set 0.0003991 415 0.02451 3 Genes involved in Gene Expression www.broad.mit.e...
Broad REACTOME_GTP_HYDROLYSIS_AND_JOINING_OF_THE_60S_RIBOSOMAL_SUBUNIT View Gene Set 0.0003952 106 0.02451 3 Genes involved in GTP hydrolysis and joining of the 60S ribosomal subunit www.broad.mit.e...
Broad REACTOME_PYRUVATE_METABOLISM_AND_TCA_CYCLE View Gene Set 0.0003789 36 0.02451 3 Genes involved in Pyruvate metabolism and TCA cycle www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_TRANSCRIPTION_INITIATION View Gene Set 0.0003275 24 0.02451 3 Genes involved in RNA PolymeraseTranscription Initiation www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_III_AND_MITOCHONDRIAL_TRANSCRIPTION View Gene Set 0.0001823 120 0.02451 3 Genes involved in RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription www.broad.mit.e...
Broad REACTOME_REGULATION_OF_PYRUVATE_DEHYDROGENASE_COMPLEX View Gene Set 0.0006987 12 0.03755 8 Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex www.broad.mit.e...
Broad REACTOME_RNA_POLYMERASE_I_PROMOTER_ESCAPE View Gene Set 0.0008181 20 0.03909 9 Genes involved in RNA Polymerase I Promoter Escape www.broad.mit.e...
Broad REACTOME_FORMATION_OF_A_POOL_OF_FREE_40S_SUBUNITS View Gene Set 0.001062 95 0.04565 10 Genes involved in Formation of a pool of free 40S subunits www.broad.mit.e...
Broad REACTOME_INFLUENZA_LIFE_CYCLE View Gene Set 0.001363 137 0.04884 11 Genes involved in Influenza Life Cycle www.broad.mit.e...
Broad REACTOME_TRANSCRIPTION View Gene Set 0.001269 188 0.04884 11 Genes involved in Transcription www.broad.mit.e...

Gene Set Collection: Broad.c4.CM

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Broad module_126 View Gene Set 1.733e-06 173 0.0007869 1 Genes in module_126 www.broad.mit.e...

Gene Set Collection: PMID

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
PMID 15772651 View Gene Set 2.454e-20 397 6.152e-17 1 The DNA sequence of the human X chromosome. www.ncbi.nlm.ni...
PMID 11780052 View Gene Set 6.996e-19 517 8.769e-16 2 The DNA sequence and comparative analysis of human chromosome 20. www.ncbi.nlm.ni...
PMID 15815621 View Gene Set 5.042e-05 437 0.04214 3 Generation and annotation of the DNA sequences of human chromosomes 2 and 4. www.ncbi.nlm.ni...
PMID 11543634 View Gene Set 6.729e-05 58 0.04217 4 The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. www.ncbi.nlm.ni...
PMID 12391170 View Gene Set 9.332e-05 18 0.04679 5 Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. www.ncbi.nlm.ni...

Gene Set Collection: ChromosomalTiles5Mb

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null chr19_10-15Mb View Gene Set 5.551e-14 87 6.184e-11 1 Genomic tile: chr19 ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr8_142.5-147.5Mb View Gene Set 2.16e-11 64 8.021e-09 2 Genomic tile: chr8 ; 142500001-147500001 Mb genome.ucsc.edu...
Null chr8_145-150Mb View Gene Set 1.793e-11 33 8.021e-09 2 Genomic tile: chr8 ; 145000001-150000001 Mb genome.ucsc.edu...
Null chr19_7.5-12.5Mb View Gene Set 1.699e-09 79 4.732e-07 4 Genomic tile: chr19 ; 7500001-12500001 Mb genome.ucsc.edu...
Null chr20_32.5-37.5Mb View Gene Set 6.857e-09 53 1.528e-06 5 Genomic tile: chr20 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr19_57.5-62.5Mb View Gene Set 5.366e-08 70 8.539e-06 6 Genomic tile: chr19 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr19_60-65Mb View Gene Set 4.789e-08 70 8.539e-06 6 Genomic tile: chr19 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr20_30-35Mb View Gene Set 1.4e-07 51 1.733e-05 8 Genomic tile: chr20 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chrX_115-120Mb View Gene Set 1.388e-07 23 1.733e-05 8 Genomic tile: chrX ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr8_95-100Mb View Gene Set 2.816e-07 26 3.137e-05 10 Genomic tile: chr8 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr3_120-125Mb View Gene Set 3.928e-07 45 3.978e-05 11 Genomic tile: chr3 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr17_72.5-77.5Mb View Gene Set 4.612e-07 77 4.281e-05 12 Genomic tile: chr17 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr3_97.5-102.5Mb View Gene Set 5.268e-07 16 4.514e-05 13 Genomic tile: chr3 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr19_12.5-17.5Mb View Gene Set 7.776e-07 85 5.414e-05 14 Genomic tile: chr19 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr19_62.5-67.5Mb View Gene Set 6.965e-07 35 5.414e-05 14 Genomic tile: chr19 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chr2_110-115Mb View Gene Set 7.473e-07 31 5.414e-05 14 Genomic tile: chr2 ; 110000001-115000001 Mb genome.ucsc.edu...
Null chr4_52.5-57.5Mb View Gene Set 8.627e-07 26 5.653e-05 17 Genomic tile: chr4 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr19_55-60Mb View Gene Set 9.178e-07 85 5.68e-05 18 Genomic tile: chr19 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr2_97.5-102.5Mb View Gene Set 1.08e-06 25 6.333e-05 19 Genomic tile: chr2 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr1_222.5-227.5Mb View Gene Set 2.126e-06 40 0.0001184 20 Genomic tile: chr1 ; 222500001-227500001 Mb genome.ucsc.edu...
Null chr2_112.5-117.5Mb View Gene Set 2.251e-06 26 0.0001194 21 Genomic tile: chr2 ; 112500001-117500001 Mb genome.ucsc.edu...
Null chr8_122.5-127.5Mb View Gene Set 2.489e-06 23 0.0001206 22 Genomic tile: chr8 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chr8_97.5-102.5Mb View Gene Set 2.426e-06 24 0.0001206 22 Genomic tile: chr8 ; 97500001-102500001 Mb genome.ucsc.edu...
Null chr3_12.5-17.5Mb View Gene Set 2.644e-06 35 0.0001227 24 Genomic tile: chr3 ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr3_100-105Mb View Gene Set 3.944e-06 15 0.0001758 25 Genomic tile: chr3 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr17_70-75Mb View Gene Set 4.363e-06 66 0.0001869 26 Genomic tile: chr17 ; 70000001-75000001 Mb genome.ucsc.edu...
Null chrX_117.5-122.5Mb View Gene Set 4.915e-06 18 0.0002028 27 Genomic tile: chrX ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr14_65-70Mb View Gene Set 5.209e-06 27 0.0002072 28 Genomic tile: chr14 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chrX_45-50Mb View Gene Set 6.148e-06 58 0.0002362 29 Genomic tile: chrX ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr14_62.5-67.5Mb View Gene Set 7.86e-06 31 0.0002825 30 Genomic tile: chr14 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chrX_147.5-152.5Mb View Gene Set 7.611e-06 55 0.0002825 30 Genomic tile: chrX ; 147500001-152500001 Mb genome.ucsc.edu...
Null chr3_95-100Mb View Gene Set 1.501e-05 10 0.0005225 32 Genomic tile: chr3 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chrX_130-135Mb View Gene Set 1.63e-05 23 0.0005502 33 Genomic tile: chrX ; 130000001-135000001 Mb genome.ucsc.edu...
Null chr2_235-240Mb View Gene Set 2.324e-05 18 0.0007613 34 Genomic tile: chr2 ; 235000001-240000001 Mb genome.ucsc.edu...
Null chr14_20-25Mb View Gene Set 3.085e-05 56 0.0009811 35 Genomic tile: chr14 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr1_220-225Mb View Gene Set 3.259e-05 28 0.0009811 35 Genomic tile: chr1 ; 220000001-225000001 Mb genome.ucsc.edu...
Null chr3_45-50Mb View Gene Set 3.203e-05 72 0.0009811 35 Genomic tile: chr3 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr3_10-15Mb View Gene Set 3.619e-05 39 0.001061 38 Genomic tile: chr3 ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr1_205-210Mb View Gene Set 3.789e-05 28 0.001082 39 Genomic tile: chr1 ; 205000001-210000001 Mb genome.ucsc.edu...
Null chr2_100-105Mb View Gene Set 4.356e-05 18 0.001213 40 Genomic tile: chr2 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr10_35-40Mb View Gene Set 4.868e-05 10 0.001239 41 Genomic tile: chr10 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr14_57.5-62.5Mb View Gene Set 4.683e-05 23 0.001239 41 Genomic tile: chr14 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr1_0-5Mb View Gene Set 4.683e-05 50 0.001239 41 Genomic tile: chr1 ; 1-5000001 Mb genome.ucsc.edu...
Null chr8_100-105Mb View Gene Set 4.896e-05 26 0.001239 41 Genomic tile: chr8 ; 100000001-105000001 Mb genome.ucsc.edu...
Null chr11_62.5-67.5Mb View Gene Set 6.118e-05 119 0.001514 45 Genomic tile: chr11 ; 62500001-67500001 Mb genome.ucsc.edu...
Null chrX_42.5-47.5Mb View Gene Set 6.903e-05 33 0.001672 46 Genomic tile: chrX ; 42500001-47500001 Mb genome.ucsc.edu...
Null chr2_117.5-122.5Mb View Gene Set 7.315e-05 17 0.001734 47 Genomic tile: chr2 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chr2_95-100Mb View Gene Set 7.805e-05 35 0.001739 48 Genomic tile: chr2 ; 95000001-100000001 Mb genome.ucsc.edu...
Null chr3_117.5-122.5Mb View Gene Set 7.802e-05 21 0.001739 48 Genomic tile: chr3 ; 117500001-122500001 Mb genome.ucsc.edu...
Null chrX_65-70Mb View Gene Set 7.605e-05 23 0.001739 48 Genomic tile: chrX ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr7_87.5-92.5Mb View Gene Set 8.279e-05 15 0.001808 51 Genomic tile: chr7 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chrX_150-155Mb View Gene Set 8.895e-05 52 0.001906 52 Genomic tile: chrX ; 150000001-155000001 Mb genome.ucsc.edu...
Null chr11_125-130Mb View Gene Set 9.59e-05 27 0.002016 53 Genomic tile: chr11 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr4_152.5-157.5Mb View Gene Set 0.00011 26 0.00227 54 Genomic tile: chr4 ; 152500001-157500001 Mb genome.ucsc.edu...
Null chr19_17.5-22.5Mb View Gene Set 0.0001133 66 0.002294 55 Genomic tile: chr19 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr19_15-20Mb View Gene Set 0.0001186 98 0.002359 56 Genomic tile: chr19 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr8_125-130Mb View Gene Set 0.0001218 15 0.002381 57 Genomic tile: chr8 ; 125000001-130000001 Mb genome.ucsc.edu...
Null chr3_47.5-52.5Mb View Gene Set 0.000127 94 0.002439 58 Genomic tile: chr3 ; 47500001-52500001 Mb genome.ucsc.edu...
Null chr19_20-25Mb View Gene Set 0.0001598 14 0.002996 59 Genomic tile: chr19 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr19_5-10Mb View Gene Set 0.0001614 67 0.002996 59 Genomic tile: chr19 ; 5000001-10000001 Mb genome.ucsc.edu...
Null chr20_17.5-22.5Mb View Gene Set 0.0001779 23 0.003249 61 Genomic tile: chr20 ; 17500001-22500001 Mb genome.ucsc.edu...
Null chr3_102.5-107.5Mb View Gene Set 0.0001885 7 0.003387 62 Genomic tile: chr3 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr8_120-125Mb View Gene Set 0.000203 21 0.00359 63 Genomic tile: chr8 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chrX_7.5-12.5Mb View Gene Set 0.0002084 14 0.003628 64 Genomic tile: chrX ; 7500001-12500001 Mb genome.ucsc.edu...
Null chr1_207.5-212.5Mb View Gene Set 0.0002289 24 0.003855 65 Genomic tile: chr1 ; 207500001-212500001 Mb genome.ucsc.edu...
Null chr8_77.5-82.5Mb View Gene Set 0.0002319 14 0.003855 65 Genomic tile: chr8 ; 77500001-82500001 Mb genome.ucsc.edu...
Null chrX_15-20Mb View Gene Set 0.0002266 19 0.003855 65 Genomic tile: chrX ; 15000001-20000001 Mb genome.ucsc.edu...
Null chr4_150-155Mb View Gene Set 0.0002517 12 0.004063 68 Genomic tile: chr4 ; 150000001-155000001 Mb genome.ucsc.edu...
Null chr4_50-55Mb View Gene Set 0.0002509 11 0.004063 68 Genomic tile: chr4 ; 50000001-55000001 Mb genome.ucsc.edu...
Null chrX_12.5-17.5Mb View Gene Set 0.0002933 23 0.004668 70 Genomic tile: chrX ; 12500001-17500001 Mb genome.ucsc.edu...
Null chr2_120-125Mb View Gene Set 0.0003072 17 0.004773 71 Genomic tile: chr2 ; 120000001-125000001 Mb genome.ucsc.edu...
Null chr8_87.5-92.5Mb View Gene Set 0.0003085 13 0.004773 71 Genomic tile: chr8 ; 87500001-92500001 Mb genome.ucsc.edu...
Null chr20_22.5-27.5Mb View Gene Set 0.0003196 20 0.004811 73 Genomic tile: chr20 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chr2_167.5-172.5Mb View Gene Set 0.000318 22 0.004811 73 Genomic tile: chr2 ; 167500001-172500001 Mb genome.ucsc.edu...
Null chr12_25-30Mb View Gene Set 0.0003304 20 0.004907 75 Genomic tile: chr12 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr19_52.5-57.5Mb View Gene Set 0.0003573 114 0.005237 76 Genomic tile: chr19 ; 52500001-57500001 Mb genome.ucsc.edu...
Null chr1_200-205Mb View Gene Set 0.0003649 57 0.005279 77 Genomic tile: chr1 ; 200000001-205000001 Mb genome.ucsc.edu...
Null chr8_92.5-97.5Mb View Gene Set 0.0004206 21 0.006007 78 Genomic tile: chr8 ; 92500001-97500001 Mb genome.ucsc.edu...
Null chr1_212.5-217.5Mb View Gene Set 0.0004289 12 0.006048 79 Genomic tile: chr1 ; 212500001-217500001 Mb genome.ucsc.edu...
Null chr18_57.5-62.5Mb View Gene Set 0.0004766 16 0.006637 80 Genomic tile: chr18 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chrX_127.5-132.5Mb View Gene Set 0.0005451 19 0.007497 81 Genomic tile: chrX ; 127500001-132500001 Mb genome.ucsc.edu...
Null chr14_55-60Mb View Gene Set 0.0005546 27 0.007534 82 Genomic tile: chr14 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr11_60-65Mb View Gene Set 0.0005732 104 0.007639 83 Genomic tile: chr11 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr20_2.5-7.5Mb View Gene Set 0.000576 33 0.007639 83 Genomic tile: chr20 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr20_25-30Mb View Gene Set 0.0008297 9 0.01087 85 Genomic tile: chr20 ; 25000001-30000001 Mb genome.ucsc.edu...
Null chr20_15-20Mb View Gene Set 0.0008729 22 0.01118 86 Genomic tile: chr20 ; 15000001-20000001 Mb genome.ucsc.edu...
Null chrX_5-10Mb View Gene Set 0.0008636 11 0.01118 86 Genomic tile: chrX ; 5000001-10000001 Mb genome.ucsc.edu...
Null chrX_132.5-137.5Mb View Gene Set 0.0009017 17 0.01141 88 Genomic tile: chrX ; 132500001-137500001 Mb genome.ucsc.edu...
Null chr4_55-60Mb View Gene Set 0.000953 20 0.01193 89 Genomic tile: chr4 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr1_202.5-207.5Mb View Gene Set 0.0009817 40 0.01215 90 Genomic tile: chr1 ; 202500001-207500001 Mb genome.ucsc.edu...
Null chr14_22.5-27.5Mb View Gene Set 0.001007 27 0.01228 91 Genomic tile: chr14 ; 22500001-27500001 Mb genome.ucsc.edu...
Null chrX_112.5-117.5Mb View Gene Set 0.001014 13 0.01228 91 Genomic tile: chrX ; 112500001-117500001 Mb genome.ucsc.edu...
Null chr11_65-70Mb View Gene Set 0.00105 90 0.01258 93 Genomic tile: chr11 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chrX_67.5-72.5Mb View Gene Set 0.001111 27 0.01317 94 Genomic tile: chrX ; 67500001-72500001 Mb genome.ucsc.edu...
Null chrX_105-110Mb View Gene Set 0.001162 19 0.01362 95 Genomic tile: chrX ; 105000001-110000001 Mb genome.ucsc.edu...
Null chr11_32.5-37.5Mb View Gene Set 0.00118 26 0.0137 96 Genomic tile: chr11 ; 32500001-37500001 Mb genome.ucsc.edu...
Null chr3_30-35Mb View Gene Set 0.001231 16 0.01414 97 Genomic tile: chr3 ; 30000001-35000001 Mb genome.ucsc.edu...
Null chr4_177.5-182.5Mb View Gene Set 0.001281 7 0.01456 98 Genomic tile: chr4 ; 177500001-182500001 Mb genome.ucsc.edu...
Null chr8_140-145Mb View Gene Set 0.001405 40 0.01581 99 Genomic tile: chr8 ; 140000001-145000001 Mb genome.ucsc.edu...
Null chr2_170-175Mb View Gene Set 0.001456 30 0.01622 100 Genomic tile: chr2 ; 170000001-175000001 Mb genome.ucsc.edu...
Null chr20_35-40Mb View Gene Set 0.001797 30 0.01983 101 Genomic tile: chr20 ; 35000001-40000001 Mb genome.ucsc.edu...
Null chr2_102.5-107.5Mb View Gene Set 0.001892 13 0.02067 102 Genomic tile: chr2 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr11_45-50Mb View Gene Set 0.002011 35 0.02175 103 Genomic tile: chr11 ; 45000001-50000001 Mb genome.ucsc.edu...
Null chr8_80-85Mb View Gene Set 0.00234 13 0.02507 104 Genomic tile: chr8 ; 80000001-85000001 Mb genome.ucsc.edu...
Null chrX_10-15Mb View Gene Set 0.002698 20 0.02862 105 Genomic tile: chrX ; 10000001-15000001 Mb genome.ucsc.edu...
Null chr17_75-80Mb View Gene Set 0.002764 37 0.02905 106 Genomic tile: chr17 ; 75000001-80000001 Mb genome.ucsc.edu...
Null chr20_27.5-32.5Mb View Gene Set 0.002802 21 0.02917 107 Genomic tile: chr20 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr3_20-25Mb View Gene Set 0.002943 9 0.03035 108 Genomic tile: chr3 ; 20000001-25000001 Mb genome.ucsc.edu...
Null chr11_57.5-62.5Mb View Gene Set 0.003349 71 0.03423 109 Genomic tile: chr11 ; 57500001-62500001 Mb genome.ucsc.edu...
Null chr3_122.5-127.5Mb View Gene Set 0.003396 38 0.03439 110 Genomic tile: chr3 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chr17_65-70Mb View Gene Set 0.003608 23 0.03621 111 Genomic tile: chr17 ; 65000001-70000001 Mb genome.ucsc.edu...
Null chr10_37.5-42.5Mb View Gene Set 0.003884 7 0.03863 112 Genomic tile: chr10 ; 37500001-42500001 Mb genome.ucsc.edu...
Null chrX_70-75Mb View Gene Set 0.003939 14 0.03883 113 Genomic tile: chrX ; 70000001-75000001 Mb genome.ucsc.edu...
Null chr1_2.5-7.5Mb View Gene Set 0.004079 33 0.03951 114 Genomic tile: chr1 ; 2500001-7500001 Mb genome.ucsc.edu...
Null chr2_215-220Mb View Gene Set 0.004064 36 0.03951 114 Genomic tile: chr2 ; 215000001-220000001 Mb genome.ucsc.edu...
Null chr1_102.5-107.5Mb View Gene Set 0.004189 6 0.04007 116 Genomic tile: chr1 ; 102500001-107500001 Mb genome.ucsc.edu...
Null chr8_107.5-112.5Mb View Gene Set 0.004209 9 0.04007 116 Genomic tile: chr8 ; 107500001-112500001 Mb genome.ucsc.edu...
Null chr8_90-95Mb View Gene Set 0.004395 16 0.04141 118 Genomic tile: chr8 ; 90000001-95000001 Mb genome.ucsc.edu...
Null chrX_72.5-77.5Mb View Gene Set 0.004423 14 0.04141 118 Genomic tile: chrX ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr10_60-65Mb View Gene Set 0.004518 11 0.04194 120 Genomic tile: chr10 ; 60000001-65000001 Mb genome.ucsc.edu...
Null chr4_72.5-77.5Mb View Gene Set 0.00473 35 0.04355 121 Genomic tile: chr4 ; 72500001-77500001 Mb genome.ucsc.edu...
Null chr2_115-120Mb View Gene Set 0.004927 6 0.04499 122 Genomic tile: chr2 ; 115000001-120000001 Mb genome.ucsc.edu...
Null chr2_212.5-217.5Mb View Gene Set 0.005 11 0.04528 123 Genomic tile: chr2 ; 212500001-217500001 Mb genome.ucsc.edu...
Null chr11_55-60Mb View Gene Set 0.005155 32 0.04631 124 Genomic tile: chr11 ; 55000001-60000001 Mb genome.ucsc.edu...
Null chr12_27.5-32.5Mb View Gene Set 0.005279 17 0.04705 125 Genomic tile: chr12 ; 27500001-32500001 Mb genome.ucsc.edu...
Null chr11_122.5-127.5Mb View Gene Set 0.005367 34 0.04708 126 Genomic tile: chr11 ; 122500001-127500001 Mb genome.ucsc.edu...
Null chr1_215-220Mb View Gene Set 0.005342 14 0.04708 126 Genomic tile: chr1 ; 215000001-220000001 Mb genome.ucsc.edu...
Null chr2_92.5-97.5Mb View Gene Set 0.005467 21 0.04758 128 Genomic tile: chr2 ; 92500001-97500001 Mb genome.ucsc.edu...

Gene Set Collection: Prosite

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null PS50805 View Gene Set 4.509e-06 415 0.003314 1 KRAB expasy.org/pros...

Gene Set Collection: pathwayCommons.reactome

Arguments: refPop=all, featureType=featureNames, colname=WilcoxUP, ranks.only=TRUE, absolute=FALSE, alternative=up

Gene Set Name GeneSetDescription Value Gene Set Size Corrected Value Ranking Description URL
Null RNA Polymerase I Promoter Clearance View Gene Set 1.097e-07 55 4.178e-05 1 REACTOME - RNA Polymerase I Promoter Clearance gene set www.pathwaycomm...
Null RNA Polymerase I Chain Elongation View Gene Set 1.122e-07 49 4.178e-05 1 REACTOME - RNA Polymerase I Chain Elongation gene set www.pathwaycomm...
Null RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription View Gene Set 5.571e-08 93 4.178e-05 1 REACTOME - RNA Polymerase I RNA Polymerase III and Mitochondrial Transcription gene set www.pathwaycomm... RNA Polymerase ... and Mitochondri...
Null RNA Polymerase I Transcription View Gene Set 2.016e-07 57 5.631e-05 4 REACTOME - RNA Polymerase I Transcription gene set www.pathwaycomm...
Null Transcription View Gene Set 4.131e-06 178 0.0009229 5 REACTOME - Transcription gene set www.pathwaycomm...
Null RNA Polymerase I Promoter Opening View Gene Set 3.386e-05 31 0.006303 6 REACTOME - RNA Polymerase I Promoter Opening gene set www.pathwaycomm...
Null Translation View Gene Set 5.132e-05 120 0.008189 7 REACTOME - Translation gene set www.pathwaycomm...
Null Cap-dependent Translation Initiation View Gene Set 0.0001317 113 0.01634 8 REACTOME - Cap-dependent Translation Initiation gene set www.pathwaycomm...
Null Eukaryotic Translation Initiation View Gene Set 0.0001317 113 0.01634 8 REACTOME - Eukaryotic Translation Initiation gene set www.pathwaycomm...
Null Gene Expression View Gene Set 0.0001945 381 0.02172 10 REACTOME - Gene Expression gene set www.pathwaycomm...
Null RNA Polymerase I Transcription Initiation View Gene Set 0.0003275 25 0.03326 11 REACTOME - RNA Polymerase I Transcription Initiation gene set www.pathwaycomm...
Null GTP hydrolysis and joining of the 60S ribosomal subunit View Gene Set 0.0003952 106 0.03679 12 REACTOME - GTP hydrolysis and joining of the 60S ribosomal subunit gene set www.pathwaycomm...
Null Purine ribonucleoside monophosphate biosynthesis View Gene Set 0.0005078 7 0.04038 13 REACTOME - Purine ribonucleoside monophosphate biosynthesis gene set www.pathwaycomm...
Null 3' -UTR-mediated translational regulation View Gene Set 0.0005422 105 0.04038 13 REACTOME - 3' -UTR-mediated translational regulation gene set www.pathwaycomm...
Null L13a-mediated translational silencing of Ceruloplasmin expression View Gene Set 0.0005422 105 0.04038 13 REACTOME - L13a-mediated translational silencing of Ceruloplasmin expression gene set www.pathwaycomm...