Digitizing Omics Profiles

Original manuscript

The link below points to the original manuscript:

Digitizing omics profiles by divergence from a baseline.

Wikum Dinalankara, Qian Ke, Yiran Xu, Lanlan Ji, Nicole Pagane, …, Elana J Fertig, Nathan D Price, Laurent Younes, Luigi Marchionni, Donald Geman

Proceedings of the National Academy of Sciences of the United States of America  ·  16 Apr 2018  ·  pubmed:29666255

cancer tumor-heterogeneity statistical-method

Code and scripts

The code and the package to reproduce all figures and analyses can be downloaded here:

• Divergence Analysis on gitHub

R-Bioconductor packages

The R-Bioconductor package for divergence analysis can be downloaded here:

• R-Bioconductor divergence package

See also the following manuscript:

An R package for divergence analysis of omics data.

Wikum Dinalankara, Qian Ke, Donald Geman, Luigi Marchionni

PloS one  ·  05 Apr 2021  ·  pubmed:33819273

method genomics transcriptomics heterogeneity

Datasets

All data analyzed in the paper can be downloaded here:

• Download the spreadsheet listing the source for all analyzed datasets

• To obtain the compressed archive with all analyzed datasets:

  marchion@med.cornell.edu