Marchionni Lab Surfing the Genome

Research

Below is the complete list of our work through the years. We know that one team won’t find all solutions, so we strive to develop tools that other scientist can use too. Our research philosophy prioritizes reproducibility, rigor, and transparency.


Highlighted (never boring …)


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The search box below allows to find the manuscripts of interest from the list below.

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2025

2024

Validation of an artificial intelligence-based prognostic biomarker in patients with oligometastatic Castration-Sensitive prostate cancer.
Validation of an artificial intelligence-based prognostic biomarker in patients with oligometastatic Castration-Sensitive prostate cancer.
Jarey H Wang, Matthew P Deek, Adrianna A Mendes, Yang Song, Amol Shetty, …, Andre Esteva, Felix Y Feng, Phuoc T Tran, Philip Sutera, Piet Ost
Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology  ·  06 Nov 2024  ·  pubmed:39510141
Gene Signature for Predicting Metastasis in Prostate Cancer Using Primary Tumor Expression Profiles.
Gene Signature for Predicting Metastasis in Prostate Cancer Using Primary Tumor Expression Profiles.
Itzel Valencia, Pier Vitale Nuzzo, Edoardo Francini, Francesco Ravera, Giuseppe Nicolò Fanelli, Sara Bleve, Cristian Scatena, Luigi Marchionni, Mohamed Omar
medRxiv : the preprint server for health sciences  ·  31 Aug 2024  ·  pubmed:39252915
Gene Signature for Predicting Metastasis in Prostate Cancer Using Primary Tumor Expression Profiles.
Gene Signature for Predicting Metastasis in Prostate Cancer Using Primary Tumor Expression Profiles.
Itzel Valencia, Pier Vitale Nuzzo, Edoardo Francini, Francesco Ravera, Giuseppe Nicolò Fanelli, Sara Bleve, Cristian Scatena, Luigi Marchionni, Mohamed Omar
Cold Spring Harbor Laboratory  ·  31 Aug 2024  ·  doi:10.1101/2024.08.30.24312735
Machine learning predicts conventional imaging metastasis-free survival MFS for oligometastatic castration-sensitive prostate cancer omCSPC using prostate-specific membrane antigen PSMA PET radiomics.
Machine learning predicts conventional imaging metastasis-free survival (MFS) for oligometastatic castration-sensitive prostate cancer (omCSPC) using prostate-specific membrane antigen (PSMA) PET radiomics.
Yufeng Cao, Philip Sutera, William Silva Mendes, Bardia Yousefi, Tom Hrinivich, …, Luigi Marchionni, Nicole L Simone, Phuoc Tran, Cem Onal, Lei Ren
Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology  ·  31 Jul 2024  ·  pubmed:39094629
Distinct mesenchymal cell states mediate prostate cancer progression.
Distinct mesenchymal cell states mediate prostate cancer progression.
Hubert Pakula, Mohamed Omar, Ryan Carelli, Filippo Pederzoli, Giuseppe Nicolò Fanelli, …, David S Rickman, Christopher E Barbieri, Brian D Robinson, Luigi Marchionni, Massimo Loda
Nature communications  ·  08 Jan 2024  ·  pubmed:38191471

2023

2022

Multi-omics biomarkers aid prostate cancer prognostication
Multi-omics biomarkers aid prostate cancer prognostication
Zhuoran Xu, Mohamed Omar, Elisa Benedetti, Jacob Rosenthal, Renato Umeton, Jan Krumsiek, Mark Pomerantz, Eddie Imada, Massimo Loda, Luigi Marchionni
Cold Spring Harbor Laboratory  ·  22 Sep 2022  ·  doi:10.1101/2022.09.20.508244

2021

Transcriptional landscape of PTEN loss in primary prostate cancer.
Transcriptional landscape of PTEN loss in primary prostate cancer.
Eddie Luidy Imada, Diego Fernando Sanchez, Wikum Dinalankara, Thiago Vidotto, Ericka M Ebot, …, Lorelei Ann Mucci, Massimo Loda, Edward Matthew Schaeffer, Tamara Lotan, Luigi Marchionni
BMC cancer  ·  26 Jul 2021  ·  pubmed:34311724
Plasma cells are enriched in localized prostate cancer in Black men and are associated with improved outcomes.
Plasma cells are enriched in localized prostate cancer in Black men and are associated with improved outcomes.
Adam B Weiner, Thiago Vidotto, Yang Liu, Adrianna A Mendes, Daniela C Salles, …, Stephen J Freedland, Daniel E Spratt, Jennifer D Wu, Tamara L Lotan, Edward M Schaeffer
Nature communications  ·  10 Feb 2021  ·  pubmed:33568675

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2013

Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors.
Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors.
Madeleine S Q Kortenhorst, Michel D Wissing, Ronald Rodríguez, Sushant K Kachhap, Judith J M Jans, …, Paul O Aiyetan, Elsken van der Wall, Michael A Carducci, Paul J Van Diest, Luigi Marchionni
Epigenetics  ·  19 Jul 2013  ·  pubmed:23880963

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The citations on this page were generated automatically from just identifiers using the Manubot cite utility developed by the Greene Lab!