Differentiation of a Highly Tumorigenic Basal Cell Compartment in
Urothelial Carcinoma
Xiaobing He, Luigi Marchionni, Donna Hansel, Wayne Yu, Akshay Sood,
Jie Yang, Giovanni Parmigiani, William Matsui and David M. Berman
Below are the links to gene expression raw data and to the Supplementary tables:
SUPPLEMENTARY TABLE A:
This Table contains the list of Differentially Expressed genes between 67LR+ and 67LR- cells.
SUPPLEMENTARY TABLE B:
This Table contains the list of Differentially Expressed genes between 67LR+ and the unsorted cells.
SUPPLEMENTARY TABLE C:
This Table contains the list of Differentially Expressed genes between 67LR- and the unsorted cells.
SUPPLEMENTARY TABLE D:
This Table contains the list of KEGG Pathways enriched in the comparison between 67LR+ and 67LR- cells.
SUPPLEMENTARY TABLE E:
This Table contains the list of Biological Processes Gene Ontology Terms enriched in the comparison between 67LR+ and 67LR- cells.
SUPPLEMENTARY TABLE F:
This Table contains the list of Differentially Expressed genes between Normal and CIS, data set GSE3167.
SUPPLEMENTARY TABLE G:
This Table contains the list of Differentially Expressed genes between Normal and Non Invasive UC, data set ETABM147.
SUPPLEMENTARY TABLE H:
This Table contains the list of Differentially Expressed genes between Normal and Non Invasive UC, data set GSE3167.
SUPPLEMENTARY TABLE I:
This Table contains the list of Differentially Expressed genes between Normal and Invasive UC, data set ETABM147.
SUPPLEMENTARY TABLE J:
This Table contains the list of Differentially Expressed genes between Normal and Invasive UC, data set GSE3167.
SUPPLEMENTARY TABLE K:
This Table contains the list of Differentially Expressed genes between Unifocal and Multifocal UC, data set GSE3167.
SUPPLEMENTARY TABLE L:
This Table contains the list of Differentially Expressed genes between Unifocal and Multifocal UC, data set GSE88GSE89.
SUPPLEMENTARY TABLE M:
This Table contains the list of Differentially Expressed genes between Non Invasive and Invasive UC, data set ETABM147.
SUPPLEMENTARY TABLE N:
This Table contains the list of Differentially Expressed genes between Non Invasive and Invasive UC, data set GSE3167.
SUPPLEMENTARY TABLE O
This Table contains the list of Differentially Expressed genes between Non Invasive and Invasive UC, data set GSE88GSE89.
SUPPLEMENTARY TABLE P
This Table contains the list of Differentially Expressed genes associated with Overall Survival, data set GSE5287.
Raw data, tar.gz archive
rawData.tar.gz
Additional results tables, Differentially expressed genes among 67LR-positive (BRIGHT), 67LR-negative (DIM), and control sorted (BULK) cells
SUPPLEMENTARY TABLE A: genes differentially expressed between BRIGHT and DIM cells
SUPPLEMENTARY TABLE B: genes differentially expressed between BRIGHT and BULK
SUPPLEMENTARY TABLE C: genes differentially expressed between DIM and BULK
Additional results tables, Functional Annotation Analysis for the comparison between 67LR-positive (BRIGHT), 67LR-negative (DIM);
The genes driving the enrichment of each category can be browsed following the hyperlink 'Genes' present on each line
SUPPLEMENTARY TABLE D: KEGG, differentially enriched functional gene sets
SUPPLEMENTARY TABLE E: Gene Ontology (Biological Function), differentially enriched functional gene sets
Additional results tables, lists of gene differentially expressed along human urotelial cancer progression;
For each contrast differential
gene expression is relative to the least advanced group
(i.e., the most advanced group is used as numerator of the
gene expression ratio.
SUPPLEMENTARY TABLE F: Normal versus CIS, GSE3167
SUPPLEMENTARY TABLE G: Normal versus Non Invasive UC, ETABM147
SUPPLEMENTARY TABLE H: Normal versus Non Invasive UC, GSE3167
SUPPLEMENTARY TABLE I: Normal versus Invasive UC, ETABM147
SUPPLEMENTARY TABLE J: Normal versus Invasive UC, GSE3167
SUPPLEMENTARY TABLE K: Unifocal vs Multifocal UC, GSE3167
SUPPLEMENTARY TABLE L: Unifocal vs Multifocal UC, GSE88GSE89
SUPPLEMENTARY TABLE M: Non Invasive versus Invasive UC, ETABM147
SUPPLEMENTARY TABLE N: Non Invasive versus Invasive UC, GSE3167
SUPPLEMENTARY TABLE O: Non Invasive versus Invasive UC, GSE88GSE89
SUPPLEMENTARY TABLE P: Decreased Suvival, GSE5287