Marchionni Lab Surfing the Genome

Blog

Some of our thoughts on a few things follows below

2024

Notch gene signature for neoadjuvant chemotherapy response in triple-negative breast cancer
Notch gene signature for neoadjuvant chemotherapy response in triple-negative breast cancer

Notch-based gene signature for predicting the response to neoadjuvant chemotherapy in triple-negative breast cancer

Meteorin-like protein in cancer immune evasion
Meteorin-like protein in cancer immune evasion

The cytokine Meteorin-like inhibits anti-tumor CD8

2023

Interpretable phenotype-aware models
Interpretable phenotype-aware models

PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants

Using biological constraints to improve prediction in precision oncology
Using biological constraints to improve prediction in precision oncology

Using biological constraints to improve prediction in precision oncology

REPAC: analysis of alternative polyadenylation from RNA-sequencing data
REPAC: analysis of alternative polyadenylation from RNA-sequencing data

REPAC: analysis of alternative polyadenylation from RNA-sequencing data

2022

Donor-derived acute myeloid leukemia in solid organ transplantation
Donor-derived acute myeloid leukemia in solid organ transplantation

Donor-derived acute myeloid leukemia in solid organ transplantation

2021

Efficient representations of tumor diversity with paired DNA-RNA aberrations
Efficient representations of tumor diversity with paired DNA-RNA aberrations

Efficient representations of tumor diversity with paired DNA-RNA aberrations

An R package for divergence analysis of omics data
An R package for divergence analysis of omics data

An R package for divergence analysis of omics data

2013

Our paper on HDAC Inhibition
Our paper on HDAC Inhibition

Genomic responses to HDAC inhibitors in prostate cancer cells

Predicting breast cancer metastatic progression
Predicting breast cancer metastatic progression

A simple and reproducible breast cancer prognostic test